Citrus Sinensis ID: 045988

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
Protein Sequence
MAEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRDNAAATLRPPK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEcccccccccEEEEEEEcccccccEEEEEEccccEEEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccEEEEEcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEEEEEccccEEcccccccccccccccccEEEccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHcccccccccccccEEccccEEEEEEEEEcccEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccEccccEEEEEEccccEEEEEEEEccccEHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcEEcccccHHHEEccEEEHHcccccccccccccccccccccccHHHHccccccccccccccccHHHHHcccccccccccHHHHcHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccEccEEccHHHcEEccEccccccccHHHccHHHHcccccccHHHHHHHHHHHHHHHHcccccccccEccEcHHHHHHHHHHHHHccccHHHHHHcccHHHHEcccccEcccccccEccHHHHHHHcccccHHHHHHHHHHHcccccccccccEcHHHHHccHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEccccccccccccccccccc
Coil and Loop (DISEMBL)
maedsngdrsdvsdytsedegtedyrrggyhavrmgdtfkngrYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQiaegdpddkKCVVKLLDhfkhsgpngqHVCMVFEYLGENLLTLIKyadyrgvpLHMVKEICFHILVGLDHLHRELsiihtdlkpenVLLMsmidpskdprksgpppmlltkkdklvldpsnqKKKIKKKAKKAAqgcssneaceenesdskpsspdhtsvdaepngdsvedqqngslikneatsneginkdckrpsrsRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIqtrqyrcpevllgskystpadlWSFACICFElatgdvlfdphsgdnydrdEDHLALMMELLGmmprkiafggrysrdffnrhgdlrhiRRLRFWPLNKVLIekydfsekdandmadflvpildfvpekrptaaqclthpwinvgprllepsmaatqpqdtggsisdknrrekDEREAMEVRVGNiaidgvskpsrdnaaatlrppk
Flexible Loop (DISEMBL)
maedsngdrsdvsdytsedegtedyrrggyHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDpskdprksgpppmlltkkdklvldpsnqkkkikkkakkaaqgcssneaceenesdskpsspdhTSVDAEPNGDSVEDQQNgslikneatsneginkdckrpsrsrRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNrhgdlrhirrlrfwplNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMaatqpqdtggsisdknrrekdereamevrvgniaidgvskpsrdnaaatlrppk
Low Complexity Region (SEG)
MAEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQkkkikkkakkaaQGcssneaceenesdsKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRDNAAATLRPPK
Disordered region (IsUnstruct)
***************************GGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM****************************************************************************************************************LLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL***********************************************************
Disordered Region (DISOPRED)
***********************DYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLV***********KKAKKAAQGCSSNEACEEN****************************************GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV***************************************************************
Disordered Region (DISEMBL)
***********************DYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSN****************************************************NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSM************************AMEVRVGNIAIDGVSKP*************
Disordered Region (DISPRO)
*********************TEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD*****PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAID******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRDNAAATLRPPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	530	2.2.26 [Sep-21-2011]
P36616	544	Protein kinase dsk1 OS=Sc	yes	no	0.845	0.823	0.439	1e-109
Q45FA5	426	Serine/threonine-protein	N/A	no	0.749	0.931	0.441	1e-102
Q96SB4	655	SRSF protein kinase 1 OS=	yes	no	0.296	0.239	0.604	1e-62
Q5RD27	655	SRSF protein kinase 1 OS=	yes	no	0.296	0.239	0.604	1e-62
O70551	648	SRSF protein kinase 1 OS=	yes	no	0.296	0.242	0.592	3e-61
O54781	681	SRSF protein kinase 2 OS=	no	no	0.290	0.226	0.603	6e-61
P78362	688	SRSF protein kinase 2 OS=	no	no	0.290	0.223	0.603	1e-60
Q9UPE1	567	SRSF protein kinase 3 OS=	no	no	0.303	0.283	0.579	8e-58
Q9Z0G2	565	SRSF protein kinase 3 OS=	no	no	0.303	0.284	0.579	1e-57
B8Y466	566	SRSF protein kinase 3 OS=	no	no	0.290	0.272	0.567	2e-56

>sp|P36616|DSK1_SCHPO Protein kinase dsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsk1 PE=3 SV=2

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/480 (43%), Positives = 288/480 (60%), Gaps = 32/480 (6%)

Query: 9   RSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSH 68
           +S V    + +E  EDY  GGYH V +G+ F + RYVV+ KLGWGHFSTVWLA+D     
Sbjct: 46  KSMVEKVKTHEENAEDYHYGGYHPVYIGEEFHHRRYVVERKLGWGHFSTVWLAYDRAAKR 105

Query: 69  YVALKVQKSAQHYTEAALDEIKILKQIAEGDPD--DKKCVVKLLDHFKHSGPNGQHVCMV 126
            VALKV +SA+HY E ++DEI+IL++I EGD     KK ++ LLD+F H GPNG HVCMV
Sbjct: 106 RVALKVVRSAEHYRETSIDEIRILQKIREGDEKHLGKKHIISLLDYFVHRGPNGAHVCMV 165

Query: 127 FEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM 186
           FE LGENLL+LI+   +RGVP+ +VK+I + +L+ LD+LHRE  IIHTDLKPENVL+   
Sbjct: 166 FEVLGENLLSLIQSYGHRGVPVGIVKQIAYQLLIALDYLHRECGIIHTDLKPENVLIC-- 223

Query: 187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSK- 245
           ID         P        +       N       KA    +G S + + +E ++ +K 
Sbjct: 224 IDQDALQHIEAPATTSSPTSNTSSSKTRNNTG-YTAKAPIIKRGQSVDNSAQERKTFAKN 282

Query: 246 ------------PSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSR 293
                       PSSP  +++   P   S+E   +   +++    N   N        S 
Sbjct: 283 PTKNSKPAGQVIPSSPFTSTLSRFP---SLEGAVSEISLRDSQKHNSHPNSPFSSGDNSL 339

Query: 294 RKELLAAVD--------LKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPAD 345
              +L  V+        +  K+ D GNACWT K FTND+QTRQYR PEV+LG ++   AD
Sbjct: 340 ---ILDGVNGSQEPVPKITVKIADLGNACWTRKHFTNDVQTRQYRSPEVILGCRWGASAD 396

Query: 346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR 405
            WSFACI FEL TGD LFDP +G++Y +++DH+A ++ELL   P+++A  G++SRD FNR
Sbjct: 397 CWSFACIIFELLTGDYLFDPRNGNSYSKEDDHIAQIIELLVNYPKQMALSGKHSRDLFNR 456

Query: 406 HGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
            G+LR+I +L+FWPL  VL +KY FS + A  ++DFL P+L F P KR  A      PW+
Sbjct: 457 RGELRNIHKLKFWPLKDVLEQKYHFSAELAQQISDFLSPMLCFDPAKRTNAGYMSNSPWL 516

May play an important role in mitotic control by altering cellular location, degree of phosphorylation and kinase activity. Abundant expression accelerates the exit when cells are in M-phase and also delays the entry into mitosis when cells are in G2. Phosphorylates prp2 in vitro and so may have a role in co-ordinating pre-mRNA splicing with the prgression of the cell division cycle.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q45FA5|SRPK_PHYPO Serine/threonine-protein kinase SRPK OS=Physarum polycephalum PE=1 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/460 (44%), Positives = 272/460 (59%), Gaps = 63/460 (13%)

Query: 15  YTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTS-HYVALK 73
           + SEDEGTEDY++GGYH V++G+ +K+   +V+ KLGWGHFSTVWLA D +     VALK
Sbjct: 28  FDSEDEGTEDYKKGGYHPVKVGEVYKSNYRIVK-KLGWGHFSTVWLAIDEKNGGREVALK 86

Query: 74  VQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGEN 133
           + KSA HY EAA DEI +L+ I+EGDP+ K CVVKLLD F H+GP+G+H+CMVFE LG N
Sbjct: 87  IVKSASHYREAAEDEIHLLQTISEGDPESKYCVVKLLDSFLHTGPHGKHICMVFEKLGSN 146

Query: 134 LLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP 193
           LL LIK  +Y+G+PL +VK +   IL+GLD+LH +  IIHTDLKPENVLL  ++ P    
Sbjct: 147 LLDLIKLHNYKGIPLPLVKCMTKQILIGLDYLHTKCKIIHTDLKPENVLLDHLLRPDT-- 204

Query: 194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTS 253
                        D   LD ++    I   A+ A Q  S                     
Sbjct: 205 ----------LNWDDQFLDGASSSSPISNDAENARQTRSGK------------------- 235

Query: 254 VDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNA 313
           +  EP+   + D  +  ++K        +   C                           
Sbjct: 236 IKWEPSA-RIADSLSRKIVKVPIVKIADLGTAC--------------------------- 267

Query: 314 CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDR 373
            WT+K FT+D+QTRQYRCPEV+LG K+ T  D+WS AC+ FELATGD+LF P  GD YD+
Sbjct: 268 -WTHKHFTDDVQTRQYRCPEVILGQKWDTTIDMWSLACMVFELATGDLLFCPKKGDKYDK 326

Query: 374 DEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR-FWPLNKVLIEKYDFSE 432
            +DHLALM+ELLG MPR     G  S  +FN  G+L++IR+L   W ++ VL EKY F +
Sbjct: 327 TDDHLALMIELLGRMPRSFITKGSKSEKYFNSKGELKYIRKLGPQWGMSDVLYEKYRFPK 386

Query: 433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLL 472
           ++A+ ++ FL+P+L + PEKR TA   L HP++   P  L
Sbjct: 387 EEADKLSAFLLPMLQYEPEKRATARDSLEHPYMADVPPFL 426

Phosphorylates serine/arginine-rich protein PSR.

Physarum polycephalum (taxid: 5791)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q96SB4|SRPK1_HUMAN SRSF protein kinase 1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2

 Score =  241 bits (615), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 134/167 (80%)

Query: 300 AVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           A  LK K+ D GNACW +K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATG
Sbjct: 488 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 547

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
           D LF+PHSG+ Y RDEDH+AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W 
Sbjct: 548 DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 607

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           L +VL+EKY++S+++A    DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct: 608 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 654

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Isoform 2 phosphorylates SFRS2, ZRSR2, LBR and PRM1. Isoform 2 phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Isoform 2 can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Isoform 1 and isoform 2 can induce splicing of exon 10 in MAPT/TAU. The ratio of isoform 1/isoform 2 plays a decisive role in determining cell fate in K562 leukaemic cell line: isoform 2 favors proliferation where as isoform 1 favors differentiation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5RD27|SRPK1_PONAB SRSF protein kinase 1 OS=Pongo abelii GN=SRPK1 PE=2 SV=2

 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 134/167 (80%)

Query: 300 AVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           A  LK K+ D GNACW +K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATG
Sbjct: 488 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 547

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
           D LF+PHSG+ Y RDEDH+AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W 
Sbjct: 548 DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 607

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           L +VL+EKY++S+++A    DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct: 608 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 654

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Phosphorylates SFRS2, ZRSR2, LBR and PRM1. Phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Can induce splicing of exon 10 in MAPT/TAU.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O70551|SRPK1_MOUSE SRSF protein kinase 1 OS=Mus musculus GN=Srpk1 PE=1 SV=2

 Score =  236 bits (602), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 134/167 (80%)

Query: 300 AVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           A  L+ K+ D GNACW +K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATG
Sbjct: 481 AEKLQVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 540

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
           D LF+PHSG++Y RDEDH+AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W 
Sbjct: 541 DYLFEPHSGEDYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 600

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           L +VL+EKY++ +++A    DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct: 601 LLEVLVEKYEWPQEEAAGFTDFLLPMLELMPEKRATAAECLRHPWLN 647

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Phosphorylates SFRS2, ZRSR2, LBR and PRM1. Phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Can induce splicing of exon 10 in MAPT/TAU.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O54781|SRPK2_MOUSE SRSF protein kinase 2 OS=Mus musculus GN=Srpk2 PE=1 SV=2

 Score =  235 bits (600), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 99/164 (60%), Positives = 128/164 (78%)

Query: 303 LKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
           ++ K+ D GNACW +K FT DIQTRQYR  EVL+G+ YSTPAD+WS AC+ FELATGD L
Sbjct: 517 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 576

Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F+PHSG++Y RDEDH+A ++ELLG +PR  A  G+YSR+FFNR G+LRHI +L+ W L  
Sbjct: 577 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 636

Query: 423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           VL+EKY +  +DA    DFL+P+L+ VPEKR +A +CL HPW+N
Sbjct: 637 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLN 680

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in splicesomal B complex formation via the phosphorylation of DDX23/PRP28.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P78362|SRPK2_HUMAN SRSF protein kinase 2 OS=Homo sapiens GN=SRPK2 PE=1 SV=3

 Score =  234 bits (597), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 99/164 (60%), Positives = 128/164 (78%)

Query: 303 LKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
           ++ K+ D GNACW +K FT DIQTRQYR  EVL+G+ YSTPAD+WS AC+ FELATGD L
Sbjct: 524 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 583

Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F+PHSG++Y RDEDH+A ++ELLG +PR  A  G+YSR+FFNR G+LRHI +L+ W L  
Sbjct: 584 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 643

Query: 423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           VL+EKY +  +DA    DFL+P+L+ VPEKR +A +CL HPW+N
Sbjct: 644 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLN 687

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in splicesomal B complex formation via the phosphorylation of DDX23/PRP28. Can mediate hepatitis B virus (HBV) core protein phosphorylation. Plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9UPE1|SRPK3_HUMAN SRSF protein kinase 3 OS=Homo sapiens GN=SRPK3 PE=2 SV=2

 Score =  225 bits (573), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 127/164 (77%)

Query: 303 LKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
           +K K+ D GNACW +K FT DIQTRQYR  EVL+G++Y  PAD+WS AC+ FELATGD L
Sbjct: 403 IKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYL 462

Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F+PHSG++Y RDEDH+A ++ELLG +P   A  GRYSR+FFNR G+LRHI  L+ W L +
Sbjct: 463 FEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYE 522

Query: 423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           VL+EKY++  + A   + FL+P+++++PEKR +AA CL HPW+N
Sbjct: 523 VLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLN 566

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9Z0G2|SRPK3_MOUSE SRSF protein kinase 3 OS=Mus musculus GN=Srpk3 PE=2 SV=1

 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 127/164 (77%)

Query: 303 LKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
           +K K+ D GNACW +K FT DIQTRQYR  EVL+G++Y  PAD+WS AC+ FELATGD L
Sbjct: 401 IKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYL 460

Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F+PHSG++Y RDEDH+A ++ELLG +P   A  GRYSR+FFNR G+LRHI  L+ W L +
Sbjct: 461 FEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIPNLKHWGLYE 520

Query: 423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           VL+EKY++  + A   + FL+P+++++PEKR +AA CL HPW+N
Sbjct: 521 VLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLN 564

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|B8Y466|SRPK3_PIG SRSF protein kinase 3 OS=Sus scrofa GN=SRPK3 PE=2 SV=1

 Score =  221 bits (562), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 126/164 (76%)

Query: 303 LKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
           ++ K+ D GNACW +K FT  IQTRQYR  EVL+G++Y  PAD+WS AC+ FELATGD L
Sbjct: 402 IRIKIADLGNACWVHKHFTEGIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYL 461

Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F+PHSG++Y RDEDH+A ++ELLG +P   A  GRYSR+FFNR G+LRHI  L+ W L +
Sbjct: 462 FEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYE 521

Query: 423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           VL+EKY++  + A   + FL+P+++++PEKR +AA CL HPW+N
Sbjct: 522 VLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLN 565

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
225436389	548	PREDICTED: serine/threonine-protein kina	0.973	0.941	0.768	0.0
224132112	548	predicted protein [Populus trichocarpa]	0.979	0.947	0.774	0.0
359479324	555	PREDICTED: serine/threonine-protein kina	0.973	0.929	0.759	0.0
224102989	547	predicted protein [Populus trichocarpa]	0.973	0.943	0.769	0.0
225441054	557	PREDICTED: serine/threonine-protein kina	0.981	0.933	0.729	0.0
297734871	473	unnamed protein product [Vitis vinifera]	0.871	0.976	0.761	0.0
255572994	547	srpk, putative [Ricinus communis] gi|223	0.990	0.959	0.736	0.0
449451086	546	PREDICTED: SRSF protein kinase 2-like [C	0.954	0.926	0.704	0.0
357440249	546	Serine/threonine protein kinase SRPK1 [M	0.950	0.923	0.716	0.0
255575463	558	srpk, putative [Ricinus communis] gi|223	0.975	0.926	0.739	0.0

>gi|225436389|ref|XP_002271598.1| PREDICTED: serine/threonine-protein kinase SRPK-like isoform 1 [Vitis vinifera]

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/541 (76%), Positives = 465/541 (85%), Gaps = 25/541 (4%)

Query: 1   MAEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWL 60
           MAED NGD S+ SDYTSEDEGTEDYRRGGYHAVR+GDTFKNGRYVVQ+KLGWGHFSTVWL
Sbjct: 1   MAEDRNGDLSEASDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQAKLGWGHFSTVWL 60

Query: 61  AWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG 120
           AWDTQ S YVALKVQKSA+HYTEAA+DEI ILKQIAEGDPDDK+CVVKLLDHFKHSGPNG
Sbjct: 61  AWDTQKSKYVALKVQKSAKHYTEAAMDEITILKQIAEGDPDDKRCVVKLLDHFKHSGPNG 120

Query: 121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN 180
           QHVCMVFEYLG+NLLTLIKYADYRG PLHMVKEICFHILVGLD+LH +LSIIHTDLKPEN
Sbjct: 121 QHVCMVFEYLGDNLLTLIKYADYRGTPLHMVKEICFHILVGLDYLHHQLSIIHTDLKPEN 180

Query: 181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPS--------------NQKKKIKKKAKK 226
           VLL+SMIDPSKDPRKSG   +L T +DK+V +P+              NQKKKI++KAK+
Sbjct: 181 VLLLSMIDPSKDPRKSGASLILPTSRDKIVSEPAASKDTKNMNGDLTKNQKKKIRRKAKR 240

Query: 227 AAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDC 286
           AAQGC   EA ++ E D+K    + ++ DA  NGDSVE+QQN S+IK+ + + + + KD 
Sbjct: 241 AAQGCMGKEASDDPELDAKAPDSEDSNNDANSNGDSVEEQQNSSVIKSSSVNTDDV-KDV 299

Query: 287 KRPSR-------SRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSK 339
           +R ++       S R++LLA VDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEV+LGSK
Sbjct: 300 RRENQGRRRGSRSTRQKLLAEVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSK 359

Query: 340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS 399
           YST ADLWSFACICFEL TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIA GGRYS
Sbjct: 360 YSTSADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYS 419

Query: 400 RDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQC 459
           RDFFNR+GDLRHIRRLRFWPLNKVL EKY+FSE+DAND+ADFLVPILDFVPEKRPTAAQC
Sbjct: 420 RDFFNRYGDLRHIRRLRFWPLNKVLTEKYEFSEQDANDIADFLVPILDFVPEKRPTAAQC 479

Query: 460 LTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSR 519
           LTHPWIN GPRL EPS+A+  P+ T G +S+K  RE+DEREAMEV VGNIAIDG SK  +
Sbjct: 480 LTHPWINAGPRLREPSIASL-PKATDGGVSEK--RERDEREAMEVGVGNIAIDGPSKSDK 536

Query: 520 D 520
           +
Sbjct: 537 E 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132112|ref|XP_002328188.1| predicted protein [Populus trichocarpa] gi|222837703|gb|EEE76068.1| predicted protein [Populus trichocarpa]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/540 (77%), Positives = 462/540 (85%), Gaps = 21/540 (3%)

Query: 1   MAEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWL 60
           MAED NGDRS+ SDYTSEDEGTEDYRRGGYHAVR+GDTFKNGRYVVQSKLGWGHFSTVWL
Sbjct: 1   MAEDRNGDRSEESDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWL 60

Query: 61  AWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG 120
           AWD Q S YVALKVQKSAQHYTEAA+DEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG
Sbjct: 61  AWDIQGSRYVALKVQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG 120

Query: 121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN 180
           QHVCMVFEYLG+NLL+LIKY+ YRGVPLHMVKEICFH+LVGLD+LHR+LSIIHTDLKPEN
Sbjct: 121 QHVCMVFEYLGDNLLSLIKYSGYRGVPLHMVKEICFHMLVGLDYLHRQLSIIHTDLKPEN 180

Query: 181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPS--------------NQKKKIKKKAKK 226
           VLL SMIDPSKDPRKSG P +L T K+K+V + S              NQKKKI+KKAKK
Sbjct: 181 VLLFSMIDPSKDPRKSGAPLILPTNKNKIVAESSSSKEIKSLNGDLTRNQKKKIRKKAKK 240

Query: 227 AAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDC 286
           AAQ C+  EA  EN++D KPSSP+ ++ D + N DS E+Q NGS+IK+++ +++G    C
Sbjct: 241 AAQSCTQKEASLENDADPKPSSPEDSNADVKSNEDSFEEQSNGSVIKDDSANSDGQKDAC 300

Query: 287 K-----RPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYS 341
           +     R SRS R+ LLAA DLKCKLVDFGNACWTYKQFT+DIQTRQYRCPEVLLGSKYS
Sbjct: 301 QAKRSRRGSRSTRQNLLAAADLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVLLGSKYS 360

Query: 342 TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRD 401
           TPADLWSFACICFEL TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIA GGRYSRD
Sbjct: 361 TPADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRD 420

Query: 402 FFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT 461
           FFNR+GDLRHIRRLRFWPL KVL+EKYDFSE+DANDM DFLVPILDFVPEKRPTAAQCL 
Sbjct: 421 FFNRYGDLRHIRRLRFWPLTKVLMEKYDFSEQDANDMTDFLVPILDFVPEKRPTAAQCLN 480

Query: 462 HPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRDN 521
           HPWI  GPRLLEPSM + + +    + S+   +EK EREAME  VGNI IDG SK S+++
Sbjct: 481 HPWITAGPRLLEPSMPSVKHEAKNRNTSEI--KEKAEREAMEAGVGNIVIDGASKKSKES 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479324|ref|XP_003632258.1| PREDICTED: serine/threonine-protein kinase SRPK-like [Vitis vinifera]

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/548 (75%), Positives = 465/548 (84%), Gaps = 32/548 (5%)

Query: 1   MAEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWL 60
           MAED NGD S+ SDYTSEDEGTEDYRRGGYHAVR+GDTFKNGRYVVQ+KLGWGHFSTVWL
Sbjct: 1   MAEDRNGDLSEASDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQAKLGWGHFSTVWL 60

Query: 61  AWDTQTS-------HYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF 113
           AWDTQ S        YVALKVQKSA+HYTEAA+DEI ILKQIAEGDPDDK+CVVKLLDHF
Sbjct: 61  AWDTQKSVCFYSPPKYVALKVQKSAKHYTEAAMDEITILKQIAEGDPDDKRCVVKLLDHF 120

Query: 114 KHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIH 173
           KHSGPNGQHVCMVFEYLG+NLLTLIKYADYRG PLHMVKEICFHILVGLD+LH +LSIIH
Sbjct: 121 KHSGPNGQHVCMVFEYLGDNLLTLIKYADYRGTPLHMVKEICFHILVGLDYLHHQLSIIH 180

Query: 174 TDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPS--------------NQKKK 219
           TDLKPENVLL+SMIDPSKDPRKSG   +L T +DK+V +P+              NQKKK
Sbjct: 181 TDLKPENVLLLSMIDPSKDPRKSGASLILPTSRDKIVSEPAASKDTKNMNGDLTKNQKKK 240

Query: 220 IKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN 279
           I++KAK+AAQGC   EA ++ E D+K    + ++ DA  NGDSVE+QQN S+IK+ + + 
Sbjct: 241 IRRKAKRAAQGCMGKEASDDPELDAKAPDSEDSNNDANSNGDSVEEQQNSSVIKSSSVNT 300

Query: 280 EGINKDCKRPSRSRR-------KELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCP 332
           + + KD +R ++ RR       ++LLA VDLKCKLVDFGNACWTYKQFTNDIQTRQYRCP
Sbjct: 301 DDV-KDVRRENQGRRRGSRSTRQKLLAEVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCP 359

Query: 333 EVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKI 392
           EV+LGSKYST ADLWSFACICFEL TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKI
Sbjct: 360 EVILGSKYSTSADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKI 419

Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEK 452
           A GGRYSRDFFNR+GDLRHIRRLRFWPLNKVL EKY+FSE+DAND+ADFLVPILDFVPEK
Sbjct: 420 ALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLTEKYEFSEQDANDIADFLVPILDFVPEK 479

Query: 453 RPTAAQCLTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAID 512
           RPTAAQCLTHPWIN GPRL EPS+A+  P+ T G +S+K  RE+DEREAMEV VGNIAID
Sbjct: 480 RPTAAQCLTHPWINAGPRLREPSIASL-PKATDGGVSEK--RERDEREAMEVGVGNIAID 536

Query: 513 GVSKPSRD 520
           G SK  ++
Sbjct: 537 GPSKSDKE 544

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102989|ref|XP_002312882.1| predicted protein [Populus trichocarpa] gi|222849290|gb|EEE86837.1| predicted protein [Populus trichocarpa]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/538 (76%), Positives = 464/538 (86%), Gaps = 22/538 (4%)

Query: 1   MAEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWL 60
           MAED NGDRS+ SDYTSEDEGTEDYRRGGYHAVR+GDTFKNGRYVVQSKLGWGHFSTVWL
Sbjct: 1   MAEDRNGDRSEESDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWL 60

Query: 61  AWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG 120
           AWDTQ S YVALKVQKSAQHYTEAA+DEIKIL+QIAEGDPDDKKCVVKLLDHFKHSGPNG
Sbjct: 61  AWDTQGSRYVALKVQKSAQHYTEAAMDEIKILEQIAEGDPDDKKCVVKLLDHFKHSGPNG 120

Query: 121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN 180
           QHVCMVFEYLG+NLLTLIKY+DYRGVPLHM KEICFHILVGLD+LHR+LSIIHTDLKPEN
Sbjct: 121 QHVCMVFEYLGDNLLTLIKYSDYRGVPLHMAKEICFHILVGLDYLHRQLSIIHTDLKPEN 180

Query: 181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPS--------------NQKKKIKKKAKK 226
           VLL+SMID SKD RKSG P +L T K+K+V + S              NQKKKI+KKAKK
Sbjct: 181 VLLLSMIDTSKDHRKSGAPLILPTSKNKIVAESSSSKEIKSLNGDLTRNQKKKIRKKAKK 240

Query: 227 AAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDC 286
           AAQ C+  EA  EN++D KP+SP+ ++VDA+ N DSV++Q NGS+IK+++ + +G    C
Sbjct: 241 AAQSCAQKEASSENDADPKPTSPEDSNVDAKSNEDSVDEQSNGSVIKDDSANTDGQKDAC 300

Query: 287 K-----RPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYS 341
           +     R SRS R++LLAA DLKCKLVDFGNACWTYKQFT+D+QTRQYRCPEVLLGSKYS
Sbjct: 301 QAKRSRRGSRSTRQKLLAAADLKCKLVDFGNACWTYKQFTSDVQTRQYRCPEVLLGSKYS 360

Query: 342 TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRD 401
           TP DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG+MPRK+A GGR SRD
Sbjct: 361 TPVDLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGVMPRKVALGGRNSRD 420

Query: 402 FFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT 461
           FFNR+GDLRHIRRLRFWPL KVL+EKYDFSE+DAND+ +FLVP+LDFVPEKRPTAAQCL 
Sbjct: 421 FFNRYGDLRHIRRLRFWPLTKVLMEKYDFSEQDANDLNNFLVPLLDFVPEKRPTAAQCLN 480

Query: 462 HPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSR 519
           HPWI  GPRLLEPSM + + +   G+IS+    EKDEREAME  +GNI IDG SK S+
Sbjct: 481 HPWIAAGPRLLEPSMPSFKHETKDGNISET---EKDEREAMEAGIGNIVIDGASKKSK 535

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441054|ref|XP_002277869.1| PREDICTED: serine/threonine-protein kinase SRPK1 [Vitis vinifera]

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/540 (72%), Positives = 443/540 (82%), Gaps = 20/540 (3%)

Query: 1   MAEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWL 60
           M +    DRS+ SDYTSEDEGTEDYRRGGYHAVR+GDTFKNGRY+VQ+KLGWGHFSTVWL
Sbjct: 1   MGDKQEEDRSESSDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYIVQTKLGWGHFSTVWL 60

Query: 61  AWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG 120
           AWDT  S YVALKVQKSAQHYTEAA+DEI IL+QIAEGDPDDKKCVVKLLDHFKHSGPNG
Sbjct: 61  AWDTLNSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNG 120

Query: 121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN 180
           QHVCMVFEYLG+NLLTLIKY DY G+PLHMVKEICFH+L GLD+LH +LSIIHTDLKPEN
Sbjct: 121 QHVCMVFEYLGDNLLTLIKYTDYHGLPLHMVKEICFHVLEGLDYLHGQLSIIHTDLKPEN 180

Query: 181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPS--------------NQKKKIKKKAKK 226
           +LL+SMIDPSKDPRKSG   +L + KDK V +                NQKKKI++KAK+
Sbjct: 181 ILLLSMIDPSKDPRKSGATLILPSNKDKNVFESGVGKDIKTSNGDLTKNQKKKIRRKAKQ 240

Query: 227 AAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS-----LIKNEATSNEG 281
           AA+GC   +A  E E D + S    +S + + +  SVEDQ N S     L+  +     G
Sbjct: 241 AAKGCVEKDAAVEAEPDPETSGALESSPNVKLDLASVEDQPNSSGNGDRLLDADGKKGPG 300

Query: 282 I-NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKY 340
             N+  +R S S R++LLA+VDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEV+LGSKY
Sbjct: 301 QGNQGHRRGSHSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKY 360

Query: 341 STPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSR 400
           ST ADLWSFACICFELATGDVLFDPHSGDN+DRDEDHLALMMELLGMMPRKIA GG+YSR
Sbjct: 361 STSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGQYSR 420

Query: 401 DFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
           +FFNR+GDLRHIRRLRFWP+NKVL+EKY+FSEKDANDMADFLVPILDFVPEKRPTAAQCL
Sbjct: 421 EFFNRYGDLRHIRRLRFWPMNKVLVEKYEFSEKDANDMADFLVPILDFVPEKRPTAAQCL 480

Query: 461 THPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRD 520
            HPWI+ GP LLEPSM + + Q     I +K +REKDEREAME+ +GNIAI   SKP  D
Sbjct: 481 LHPWISAGPLLLEPSMPSVKIQAGESVICEKKKREKDEREAMEIGMGNIAISADSKPVED 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734871|emb|CBI17105.3| unnamed protein product [Vitis vinifera]

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/520 (76%), Positives = 429/520 (82%), Gaps = 58/520 (11%)

Query: 1   MAEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWL 60
           MAED NGD S+ SDYTSEDEGTEDYRRGGYHAVR+GDTFKNGRYVVQ+KLGWGHFSTVWL
Sbjct: 1   MAEDRNGDLSEASDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQAKLGWGHFSTVWL 60

Query: 61  AWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG 120
           AWDTQ S YVALKVQKSA+HYTEAA+DEI ILKQIAEGDPDDK+CVVKLLDHFKHSGPNG
Sbjct: 61  AWDTQKSKYVALKVQKSAKHYTEAAMDEITILKQIAEGDPDDKRCVVKLLDHFKHSGPNG 120

Query: 121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN 180
           QHVCMVFEYLG+NLLTLIKYADYRG PLHMVKEICFHILVGLD+LH +LSIIHTDLKPEN
Sbjct: 121 QHVCMVFEYLGDNLLTLIKYADYRGTPLHMVKEICFHILVGLDYLHHQLSIIHTDLKPEN 180

Query: 181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEEN 240
           VLL+SMIDPSKDPRKSG   +L T +DK+         KI++KAK+AAQ  ++       
Sbjct: 181 VLLLSMIDPSKDPRKSGASLILPTSRDKI---------KIRRKAKRAAQDSNN------- 224

Query: 241 ESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAA 300
                         DA  NGDSVE+QQN S                         +LLA 
Sbjct: 225 --------------DANSNGDSVEEQQNSS-------------------------KLLAE 245

Query: 301 VDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGD 360
           VDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEV+LGSKYST ADLWSFACICFEL TGD
Sbjct: 246 VDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELVTGD 305

Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL 420
           VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIA GGRYSRDFFNR+GDLRHIRRLRFWPL
Sbjct: 306 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPL 365

Query: 421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQ 480
           NKVL EKY+FSE+DAND+ADFLVPILDFVPEKRPTAAQCLTHPWIN GPRL EPS+A+  
Sbjct: 366 NKVLTEKYEFSEQDANDIADFLVPILDFVPEKRPTAAQCLTHPWINAGPRLREPSIASL- 424

Query: 481 PQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRD 520
           P+ T G +S+K  RE+DEREAMEV VGNIAIDG SK  ++
Sbjct: 425 PKATDGGVSEK--RERDEREAMEVGVGNIAIDGPSKSDKE 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572994|ref|XP_002527427.1| srpk, putative [Ricinus communis] gi|223533162|gb|EEF34919.1| srpk, putative [Ricinus communis]

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/550 (73%), Positives = 458/550 (83%), Gaps = 25/550 (4%)

Query: 1   MAEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWL 60
           MAED NG+RS+ SDYTSEDEGTEDYRRGGYHAVR+GD FKNGRYVVQ+KLGWGHFSTVWL
Sbjct: 1   MAEDRNGERSEESDYTSEDEGTEDYRRGGYHAVRIGDRFKNGRYVVQNKLGWGHFSTVWL 60

Query: 61  AWDTQTS--HYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP 118
           AWDTQ S   YVALKVQKSAQHYTEAA+DEIKILKQIAEGD +DKKCVVKLLDHFKHSGP
Sbjct: 61  AWDTQGSPPRYVALKVQKSAQHYTEAAMDEIKILKQIAEGDTEDKKCVVKLLDHFKHSGP 120

Query: 119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP 178
           NG HVCMVFEYLG+NLLTLIKY DYRG+PLHMVKEICF+ILVGLD+LHR+LSIIHTDLKP
Sbjct: 121 NGHHVCMVFEYLGDNLLTLIKYGDYRGIPLHMVKEICFNILVGLDYLHRQLSIIHTDLKP 180

Query: 179 ENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPS--------------NQKKKIKKKA 224
           EN+LL+SMIDPSKDP  S  PP++   K+K+  +P+              NQKKKIKKKA
Sbjct: 181 ENILLLSMIDPSKDPCNSDAPPIIPNSKNKVAAEPAAPKCSKSLNGDLTKNQKKKIKKKA 240

Query: 225 KKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK 284
           KKAAQ C+  EA EEN++D +   P+  + DA+ N DSV++  + SLIK+E T+ E   K
Sbjct: 241 KKAAQSCAEKEASEENKADPETPGPEDPNTDAKSNKDSVDELSDTSLIKDEPTNREE-KK 299

Query: 285 DC------KRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGS 338
           D       +R SRS R++LLAAVDLKCKLVDFGNACWTYKQFT+DIQTRQYRCPEV+LGS
Sbjct: 300 DAHKEKPRRRGSRSTRQKLLAAVDLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVILGS 359

Query: 339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRY 398
           KYSTPAD+WSFACICFELATGD+LFDPHSGDNYDRDEDHLALMMELLG MPRKIA GGR+
Sbjct: 360 KYSTPADIWSFACICFELATGDILFDPHSGDNYDRDEDHLALMMELLGTMPRKIALGGRH 419

Query: 399 SRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQ 458
           SRDFFNR+GDLRHIRRLRFWPLNKVL+EKYD SE+DA DMADFL P+LDFVPEKRPTAAQ
Sbjct: 420 SRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDLSEQDATDMADFLTPLLDFVPEKRPTAAQ 479

Query: 459 CLTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPS 518
           CL+HPWI  GPRLLEPSM   Q   T G++ + N+ E +ERE +E  VGN+AID   KPS
Sbjct: 480 CLSHPWITAGPRLLEPSMPHVQLHATSGNMPE-NKSESNEREPIEAGVGNMAIDVAPKPS 538

Query: 519 RDNAAATLRP 528
           ++    TL P
Sbjct: 539 KE-VNPTLEP 547

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451086|ref|XP_004143293.1| PREDICTED: SRSF protein kinase 2-like [Cucumis sativus] gi|449523209|ref|XP_004168616.1| PREDICTED: SRSF protein kinase 2-like [Cucumis sativus]

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/534 (70%), Positives = 437/534 (81%), Gaps = 28/534 (5%)

Query: 8   DRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTS 67
           D +D SDYTS+DEG+EDYRRGGYHAVR+GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQ+S
Sbjct: 9   DHTDSSDYTSDDEGSEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQSS 68

Query: 68  HYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVF 127
            YVALKVQKSAQHYTEAA+DEI ILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM+F
Sbjct: 69  RYVALKVQKSAQHYTEAAMDEITILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMIF 128

Query: 128 EYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI 187
           EYLG+NLLTLIKY DYRG+P+HMVKEICFHILVGLD+LH++LSIIHTDLKPEN+LL+SMI
Sbjct: 129 EYLGDNLLTLIKYTDYRGLPIHMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMI 188

Query: 188 DPSKDPRKSGPPPMLLTKKDKLVLDPS--------------NQKKKIKKKAKKAAQGCSS 233
           DPSKDPRKSG P +L T KDK   +                + K+ I++KAK+AAQGC  
Sbjct: 189 DPSKDPRKSGIPLILPTNKDKATFESGISKEIKFSNGDLTKHHKRNIRRKAKQAAQGCVE 248

Query: 234 NEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI------NKDCK 287
            E   E E++ + S    +S +A+ +  + E++Q+ S   N +   +G       N+  K
Sbjct: 249 KEMTAEAETNPETSGTVESSPNAKSSAGAAEERQSSSFKTNRSLDADGAKGDGEENQVAK 308

Query: 288 RPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLW 347
           + SR R+K LLA++DL CKLVDFGNACWTYKQFTNDIQTRQYRCPEV+LGSKYST ADLW
Sbjct: 309 KGSRLRKKMLLASLDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLW 368

Query: 348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG 407
           SFACICFELATGDVLFDPHSGDN+DRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR+G
Sbjct: 369 SFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRYG 428

Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
           +LRHIRRLRFWPLNKVL+EKYDF+E+DAN MA+FLVPILDFVPE RP+A +CL HPW+N 
Sbjct: 429 NLRHIRRLRFWPLNKVLMEKYDFNEQDANQMAEFLVPILDFVPENRPSAGECLLHPWMNA 488

Query: 468 GPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRDN 521
           GPRLLEPS+          S S++N+ E ++ EAMEV +  IAI   S+ + D+
Sbjct: 489 GPRLLEPSLNP--------STSEENKMENEDMEAMEVGMRKIAISSDSEQANDS 534

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440249|ref|XP_003590402.1| Serine/threonine protein kinase SRPK1 [Medicago truncatula] gi|355479450|gb|AES60653.1| Serine/threonine protein kinase SRPK1 [Medicago truncatula]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/526 (71%), Positives = 436/526 (82%), Gaps = 22/526 (4%)

Query: 10  SDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHY 69
           ++ SD+TSEDEGTEDYRRGGYHAVR+GDTF +GRYVVQSKLGWGHFSTVWLAWD+  S Y
Sbjct: 10  TESSDFTSEDEGTEDYRRGGYHAVRIGDTFSSGRYVVQSKLGWGHFSTVWLAWDSHHSRY 69

Query: 70  VALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEY 129
           VALKVQKSAQHYTEAALDEI IL+QIAEGD DDKKCVVKLLDHFKHSGPNGQHVCMVFEY
Sbjct: 70  VALKVQKSAQHYTEAALDEITILQQIAEGDTDDKKCVVKLLDHFKHSGPNGQHVCMVFEY 129

Query: 130 LGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP 189
           LG+NLLTLIKY+DYRG+P++MVKEICFHILVGLD+LH++LSIIHTDLKPEN+LL+S IDP
Sbjct: 130 LGDNLLTLIKYSDYRGMPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSTIDP 189

Query: 190 SKDPRKSGPPPMLLTKKDKLVLDPS--------------NQKKKIKKKAKKAAQGCSSNE 235
           SKDPRKSG P +L   KDK +L+ +              N KK IK+KAK+AA GC+  E
Sbjct: 190 SKDPRKSGAPLILPNSKDKTMLESTAARDTKTSNGDFIKNHKKNIKRKAKQAAHGCAEKE 249

Query: 236 ACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGIN---KDCKRPSRS 292
           A E  + + + S     +V++ PN  S  +Q + S   +  +  +G+    +  +R SR+
Sbjct: 250 ASEGVDGNHETSG----AVESSPNASSAREQASSSAGTSRLSDADGMKLKEQGNRRGSRT 305

Query: 293 RRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI 352
            R++LLA+ D+KCKLVDFGNACWTYKQFTNDIQTRQYRCPEV+LGSKYST ADLWSFACI
Sbjct: 306 VRQKLLASADVKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACI 365

Query: 353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI 412
           CFELATGDVLFDPHSGDN+DRDEDHLALMMELLGMMPRKIA GGRYSRDFFNR+GDLRHI
Sbjct: 366 CFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHI 425

Query: 413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLL 472
           RRLRFWPLNKVL+EKYDFSEKDA+DM+DFLV ILDFVPEKRPTA QCL HPW+N GPRLL
Sbjct: 426 RRLRFWPLNKVLMEKYDFSEKDASDMSDFLVSILDFVPEKRPTAGQCLLHPWMNAGPRLL 485

Query: 473 EPSMAATQPQDTGGSI-SDKNRREKDEREAMEVRVGNIAIDGVSKP 517
           EPS+ ++       +  SD+  ++KDEREAME  +GNIAI+  SKP
Sbjct: 486 EPSVPSSNHNPGAETANSDQKNKDKDEREAMEAGIGNIAINSDSKP 531

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575463|ref|XP_002528633.1| srpk, putative [Ricinus communis] gi|223531922|gb|EEF33736.1| srpk, putative [Ricinus communis]

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/534 (73%), Positives = 447/534 (83%), Gaps = 17/534 (3%)

Query: 8   DRSDVS-DYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQT 66
           DRS  S DYTSEDEGTEDYRRGGYHAVR+GD+FKNGRYVVQ KLGWGHFSTVWLAWDT  
Sbjct: 14  DRSSESGDYTSEDEGTEDYRRGGYHAVRIGDSFKNGRYVVQGKLGWGHFSTVWLAWDTLK 73

Query: 67  SHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV 126
             +VALKVQKSAQHYTEAA+DEI IL+QIA+GDPDDKKCVVKLLDHFKHSGPNGQHVCMV
Sbjct: 74  PQFVALKVQKSAQHYTEAAMDEITILQQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMV 133

Query: 127 FEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM 186
           FEYLG+NLLTLIKY+DYRG+P++ VKEICFHILVGLD+LHR+LSIIHTDLKPEN+LL+SM
Sbjct: 134 FEYLGDNLLTLIKYSDYRGMPINKVKEICFHILVGLDYLHRQLSIIHTDLKPENILLLSM 193

Query: 187 IDPSKDPRKSGPPPMLLTKKDKLVLDPS----------NQKKKIKKKAKKAAQGCSSNEA 236
           IDP KDPRKSG P +L + KDK  L+            NQKKKI++KAK+AAQGC   EA
Sbjct: 194 IDPIKDPRKSGAPLILPSSKDKTALESGIVRLNGDLTRNQKKKIRRKAKRAAQGCVEKEA 253

Query: 237 CEENESDSKPSSPDHTSVDAEPNGDSVEDQ----QNGSLIKNEATSNEGI-NKDCKRPSR 291
             E ++D + S  +  S +A+ N  S EDQ     N S   +   +  G+ N+  KR SR
Sbjct: 254 SAEVDADPETSVAEELSANAKTNVGSAEDQPANFDNTSRPFDADGTKGGLDNQGNKRGSR 313

Query: 292 SRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC 351
           S R++LLA+VDL CKLVDFGNACWTYKQFTNDIQTRQYRCPEV+LGSKYST ADLWSFAC
Sbjct: 314 STRQKLLASVDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFAC 373

Query: 352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH 411
           ICFELATGDVLFDPHSGDN+DRDEDHLALMMELLGMMPRKIA GGRYSRDFFNR+GDLRH
Sbjct: 374 ICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRH 433

Query: 412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL 471
           IRRLRFWPLNKVL+EKY+FSEKDANDM DFLVPILDFVPEKRPTAAQCL HPWI+ GPR 
Sbjct: 434 IRRLRFWPLNKVLMEKYEFSEKDANDMTDFLVPILDFVPEKRPTAAQCLLHPWISSGPRS 493

Query: 472 LEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRDNAAAT 525
           LEPSM + Q + + G  S+K +REKDEREAME  +GNIAI+  SK  +D+ +++
Sbjct: 494 LEPSMPSHQNEASEGVNSEK-KREKDEREAMEKGMGNIAINADSKLVKDSPSSS 546

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
TAIR|locus:2082107	534	AT3G44850 [Arabidopsis thalian	0.971	0.964	0.685	9e-196
TAIR|locus:2085151	529	SRPK4 "ser/arg-rich protein ki	0.967	0.969	0.690	9e-196
TAIR|locus:2172651	538	AT5G22840 [Arabidopsis thalian	0.967	0.953	0.687	6.5e-193
TAIR|locus:2053938	440	AT2G17530 [Arabidopsis thalian	0.364	0.438	0.621	4.2e-130
TAIR|locus:2127903	439	AT4G35500 [Arabidopsis thalian	0.332	0.400	0.625	5e-125
UNIPROTKB|B4DS61	639	SRPK1 "SFRS protein kinase 1,	0.388	0.322	0.530	1.6e-111
UNIPROTKB|H3BLV9	671	SRPK1 "SRSF protein kinase 1"	0.388	0.307	0.530	1.6e-111
UNIPROTKB|Q96SB4	655	SRPK1 "SRSF protein kinase 1"	0.388	0.314	0.530	1.6e-111
UNIPROTKB|Q5RD27	655	SRPK1 "SRSF protein kinase 1"	0.388	0.314	0.525	4.3e-111
UNIPROTKB|E9PTN4	655	Srpk1 "Protein Srpk1" [Rattus	0.379	0.306	0.521	1.1e-110

TAIR|locus:2082107 AT3G44850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1896 (672.5 bits), Expect = 9.0e-196, P = 9.0e-196
 Identities = 367/535 (68%), Positives = 425/535 (79%)

Query:     1 MAEDSNGDR-SDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVW 59
             MAED N  R +D S+Y+SEDEGTEDY++GGYH VR+GDTFKNG YV+QSKLGWGHFSTVW
Sbjct:     1 MAEDKNNGRVNDESEYSSEDEGTEDYKKGGYHTVRVGDTFKNGAYVIQSKLGWGHFSTVW 60

Query:    60 LAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN 119
             LAWDTQ S YVALKVQKSAQHYTEAA+DEIKILKQIAEGD  DKKCVVKLLDHFKH+GPN
Sbjct:    61 LAWDTQESRYVALKVQKSAQHYTEAAMDEIKILKQIAEGDSGDKKCVVKLLDHFKHTGPN 120

Query:   120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPE 179
             G+HVCMVFEYLG+NLL++IKY+DYRGVPLHMVKE+CFHILVGLD+LHRELSIIHTDLKPE
Sbjct:   121 GKHVCMVFEYLGDNLLSVIKYSDYRGVPLHMVKELCFHILVGLDYLHRELSIIHTDLKPE 180

Query:   180 NVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPS----------NQXXXXXXXXXXXXQ 229
             NVLL+S IDPS+D R+SG P +L   KDK+V + +          N             +
Sbjct:   181 NVLLLSTIDPSRDVRRSGVPLVLPITKDKIVSESAVKPETKSYTYNGDLTKNQKKKIRKK 240

Query:   230 GXXXXXXXXXXXXXXKPSSPDHTSVDAEPNGDSVEDQQNGS---LIKNEAT---SNEGIN 283
                            + S  D  S +A  NG+S  ++  GS   L++ E     +N+   
Sbjct:   241 AKKVVAQDFGGEEALEESERDSNS-EARINGNSTVERSEGSSTRLMEGEEAREKANKKNG 299

Query:   284 KDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTP 343
             +  +R SRS R++LL+ ++ KCKLVDFGNACWTYKQFT+DIQTRQYRCPEV+LGSKYST 
Sbjct:   300 RGSRRGSRSTRQKLLSDIECKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVVLGSKYSTS 359

Query:   344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF 403
             AD+WSFACICFELATGDVLFDPHSG+NYDRDEDHLALMMELLGMMPRKIA GGRYSRDFF
Sbjct:   360 ADMWSFACICFELATGDVLFDPHSGENYDRDEDHLALMMELLGMMPRKIALGGRYSRDFF 419

Query:   404 NRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHP 463
             NR G+LRHIRRLRFWP++KVL EKYDFSE+DA DM+DFLV IL+FVPEKRPTAAQCL HP
Sbjct:   420 NRQGELRHIRRLRFWPISKVLKEKYDFSEQDAKDMSDFLVTILEFVPEKRPTAAQCLKHP 479

Query:   464 WINVGPRLLEPSMAATQPQ-DTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKP 517
             W N GPRLLEPS+   QP+ +  G+ ++   +EKDEREAME  VGNIAID VS+P
Sbjct:   480 WFNPGPRLLEPSLKPQQPKGEEEGAANENIEKEKDEREAMEAGVGNIAID-VSEP 533

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2085151 SRPK4 "ser/arg-rich protein kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1896 (672.5 bits), Expect = 9.0e-196, P = 9.0e-196
 Identities = 362/524 (69%), Positives = 418/524 (79%)

Query:    10 SDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHY 69
             SD  +YTSEDEGTEDYRRGGYHAVR+GD+FK GRYVVQSKLGWGHFSTVWL+WDTQ+S Y
Sbjct:     8 SDGGEYTSEDEGTEDYRRGGYHAVRIGDSFKTGRYVVQSKLGWGHFSTVWLSWDTQSSRY 67

Query:    70 VALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEY 129
             VALKVQKSAQHYTEAA+DEI IL+QIAEGD DD KCVVKLLDHFKHSGPNGQHVCMVFEY
Sbjct:    68 VALKVQKSAQHYTEAAMDEITILQQIAEGDTDDTKCVVKLLDHFKHSGPNGQHVCMVFEY 127

Query:   130 LGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP 189
             LG+NLLTLIKY+DYRG+P+ MVKEIC+H+LVGLD+LH++LSIIHTDLKPENVLL S IDP
Sbjct:   128 LGDNLLTLIKYSDYRGLPIPMVKEICYHMLVGLDYLHKQLSIIHTDLKPENVLLPSTIDP 187

Query:   190 SKDPRKSGPPPMLLTKKDKLVLDPS-----NQXXXXXXXXXXXXQGXXXXXXXXXXXXXX 244
             SKDPRKSG P +L T KD  V+D +     NQ            QG              
Sbjct:   188 SKDPRKSGAPLVLPTDKDNTVVDSNGDFVKNQKTGSHRKAKLSAQGHAENKGNTESDKVR 247

Query:   245 KPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLK 304
                SP +    A     SVE+    +    E   +E   +  K+ SRS R+ L+A+ DLK
Sbjct:   248 GVGSPVNGKQCAAEK--SVEEDCPSTSDAIELDGSEKGKQGGKKGSRSSRRHLVASADLK 305

Query:   305 CKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFD 364
             CKLVDFGNACWTYKQFT+DIQTRQYRCPEV+LGSKYST ADLWSFACICFEL TGDVLFD
Sbjct:   306 CKLVDFGNACWTYKQFTSDIQTRQYRCPEVILGSKYSTSADLWSFACICFELVTGDVLFD 365

Query:   365 PHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL 424
             PHSGDNYDRDEDHLALMMELLGMMPRKIA GGRYSRDFFNRHGDLRHIRRLRFWP+NKVL
Sbjct:   366 PHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL 425

Query:   425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQDT 484
              EKY+FSE+DAND++DFLV ILDFVPEKRPTAAQCL HPWIN GPR ++PS+   + +++
Sbjct:   426 TEKYEFSEQDANDLSDFLVSILDFVPEKRPTAAQCLLHPWINSGPRSIKPSL---KDENS 482

Query:   485 GGSISDKNRREKDEREAMEVRVGNIAIDGV-SKPSRDNAAATLR 527
                 ++KN+RE +E+EA+EV++GN+ I  + SKP    +++TL+
Sbjct:   483 DKLDTEKNKRENEEQEAVEVKMGNVVISSLDSKPGMSQSSSTLK 526

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

TAIR|locus:2172651 AT5G22840 [Arabidopsis thaliana (taxid:3702)]

 Score = 1869 (663.0 bits), Expect = 6.5e-193, P = 6.5e-193
 Identities = 357/519 (68%), Positives = 414/519 (79%)

Query:     1 MAEDSNGDR-SDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVW 59
             MA++ NG R SD SDY+SEDEGTEDYRRGGYH VR+GDTFKNG YV+QSKLGWGHFSTVW
Sbjct:     1 MADEKNGGRLSDASDYSSEDEGTEDYRRGGYHTVRVGDTFKNGSYVIQSKLGWGHFSTVW 60

Query:    60 LAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN 119
             LAWDT  S YVALK+QKSAQHYTEAA+DEIKILKQIAEGD +DKKCVVKLLDHFKH+GPN
Sbjct:    61 LAWDTLNSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDAEDKKCVVKLLDHFKHAGPN 120

Query:   120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPE 179
             GQHVCMVFEYLG+NLL++IKY+DYRGVPLHMVKEICFHILVGLD+LHRELSIIHTD+KPE
Sbjct:   121 GQHVCMVFEYLGDNLLSVIKYSDYRGVPLHMVKEICFHILVGLDYLHRELSIIHTDIKPE 180

Query:   180 NVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLD-P--SNQXXXXXXXXXXXXQGXXXXXX 236
             N+LL S IDP  D RKSG P +L T KDK V + P    +                    
Sbjct:   181 NILLCSTIDPEADARKSGIPLVLPTVKDKAVPERPVEKEKPKSYTYSADLTKNQKKKIRK 240

Query:   237 XXXXXXXXKPSSPDHTSVDAEPNGDS-VEDQQNGSLIKNEATSNEGINKDCKRPSRSRRK 295
                     + +  D ++ +A PNG++ VE  +  S    +A +    ++  +R S+S R+
Sbjct:   241 KAKKVEGSEENERDSSNSEARPNGNATVERLEESSERVKDAENVSQKSRGNRRGSQSTRQ 300

Query:   296 ELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE 355
             +LLA VD KCKLVDFGNACWTYKQFT+DIQTRQYRCPEV+LGSKYST AD+WSFACICFE
Sbjct:   301 KLLADVDRKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVVLGSKYSTSADMWSFACICFE 360

Query:   356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL 415
             LATGDVLFDPHSG+N++RDEDHLALMMELLGMMPRKIA GGR+SRDFFNR G+LRHIRRL
Sbjct:   361 LATGDVLFDPHSGENFERDEDHLALMMELLGMMPRKIALGGRHSRDFFNRQGELRHIRRL 420

Query:   416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPS 475
             RFWPL+KVL +KYDFSE+DA  M DF+ PIL FVPEKRPTAAQCLTHPW+N  P+ L+PS
Sbjct:   421 RFWPLSKVLTDKYDFSEEDAIAMQDFITPILQFVPEKRPTAAQCLTHPWLNPVPKSLKPS 480

Query:   476 MAATQPQDTGGSISDKNR-REKDEREAMEVRVGNIAIDG 513
              +   P++     SD+++ +EK EREAME  VGNIAIDG
Sbjct:   481 SSPQNPKEEEEEASDEDKDKEKVEREAMEAGVGNIAIDG 519

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2053938 AT2G17530 [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 4.2e-130, Sum P(2) = 4.2e-130
 Identities = 120/193 (62%), Positives = 155/193 (80%)

Query:    10 SDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHY 69
             S  S    +DEG + YR+GGYHAVR+GD F  GRY+ Q KLGWG FSTVWLA+DT+TS+Y
Sbjct:     4 SSSSGSEEDDEGFDAYRKGGYHAVRIGDQFAGGRYIAQRKLGWGQFSTVWLAYDTRTSNY 63

Query:    70 VALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEY 129
             VALK+QKSA  + +AAL EI++L+  A+GDP++ KCV++L+D FKH+GPNGQH+CMV E+
Sbjct:    64 VALKIQKSALQFAQAALHEIELLQAAADGDPENTKCVIRLIDDFKHAGPNGQHLCMVLEF 123

Query:   130 LGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP 189
             LG++LL LIKY  Y+G+ L  V+EIC  IL GLD+LHREL +IH+DLKPEN+LL S IDP
Sbjct:   124 LGDSLLRLIKYNRYKGMELSKVREICKCILTGLDYLHRELGMIHSDLKPENILLCSTIDP 183

Query:   190 SKDPRKSGPPPML 202
             +KDP +SG  P+L
Sbjct:   184 AKDPIRSGLTPIL 196

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2127903 AT4G35500 [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 5.0e-125, Sum P(2) = 5.0e-125
 Identities = 110/176 (62%), Positives = 137/176 (77%)

Query:   292 SRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC 351
             S+ ++ L  +D++CK+VDFGNACW  KQF  +IQTRQYR PEV+L S YS   D+WSF C
Sbjct:   244 SKTEKSLDGIDMRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILKSGYSFSVDMWSFGC 303

Query:   352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH 411
               FEL TGD+LF P  G+ Y  DEDHLALMMELLG MPRKIA GG  S+D+F+RHGDL+ 
Sbjct:   304 TAFELVTGDMLFAPKDGNGYGEDEDHLALMMELLGKMPRKIAIGGAKSKDYFDRHGDLKR 363

Query:   412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             IRRL++WPL+++LI+KY   E +A + A+FL PIL+F PEKRPTA QCL HPW+NV
Sbjct:   364 IRRLKYWPLDRLLIDKYKLPEAEAKEFAEFLTPILEFAPEKRPTAQQCLDHPWMNV 419

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|B4DS61 SRPK1 "SFRS protein kinase 1, isoform CRA_f" [Homo sapiens (taxid:9606)]

 Score = 603 (217.3 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
 Identities = 114/215 (53%), Positives = 151/215 (70%)

Query:   253 SVDAE-PNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFG 311
             S+ AE P  D  E + NG L  N+  S  G       P   +  E      LK K+ D G
Sbjct:   432 SIRAEIPCEDEQEQEHNGPL-DNKGKSTAG--NFLVNPLEPKNAE-----KLKVKIADLG 483

Query:   312 NACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNY 371
             NACW +K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATGD LF+PHSG+ Y
Sbjct:   484 NACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEY 543

Query:   372 DRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS 431
              RDEDH+AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W L +VL+EKY++S
Sbjct:   544 TRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWS 603

Query:   432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             +++A    DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct:   604 QEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 638

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|H3BLV9 SRPK1 "SRSF protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 603 (217.3 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
 Identities = 114/215 (53%), Positives = 151/215 (70%)

Query:   253 SVDAE-PNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFG 311
             S+ AE P  D  E + NG L  N+  S  G       P   +  E      LK K+ D G
Sbjct:   464 SIRAEIPCEDEQEQEHNGPL-DNKGKSTAG--NFLVNPLEPKNAE-----KLKVKIADLG 515

Query:   312 NACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNY 371
             NACW +K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATGD LF+PHSG+ Y
Sbjct:   516 NACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEY 575

Query:   372 DRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS 431
              RDEDH+AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W L +VL+EKY++S
Sbjct:   576 TRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWS 635

Query:   432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             +++A    DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct:   636 QEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 670

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q96SB4 SRPK1 "SRSF protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 603 (217.3 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
 Identities = 114/215 (53%), Positives = 151/215 (70%)

Query:   253 SVDAE-PNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFG 311
             S+ AE P  D  E + NG L  N+  S  G       P   +  E      LK K+ D G
Sbjct:   448 SIRAEIPCEDEQEQEHNGPL-DNKGKSTAG--NFLVNPLEPKNAE-----KLKVKIADLG 499

Query:   312 NACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNY 371
             NACW +K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATGD LF+PHSG+ Y
Sbjct:   500 NACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEY 559

Query:   372 DRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS 431
              RDEDH+AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W L +VL+EKY++S
Sbjct:   560 TRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWS 619

Query:   432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             +++A    DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct:   620 QEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 654

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0007243 "intracellular protein kinase cascade" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0050684 "regulation of mRNA processing" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=TAS

GO:0035092 "sperm chromatin condensation" evidence=TAS

GO:0004672 "protein kinase activity" evidence=TAS

GO:0045087 "innate immune response" evidence=IC

GO:0045071 "negative regulation of viral genome replication" evidence=IDA

GO:0045070 "positive regulation of viral genome replication" evidence=IDA

UNIPROTKB|Q5RD27 SRPK1 "SRSF protein kinase 1" [Pongo abelii (taxid:9601)]

 Score = 599 (215.9 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
 Identities = 113/215 (52%), Positives = 150/215 (69%)

Query:   253 SVDAE-PNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFG 311
             S+  E P  D  E + NG L  N+  S  G       P   +  E      LK K+ D G
Sbjct:   448 SIRVEIPCEDEQEQEHNGPL-DNKGKSTAG--NFLVNPLEPKNAE-----KLKVKIADLG 499

Query:   312 NACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNY 371
             NACW +K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATGD LF+PHSG+ Y
Sbjct:   500 NACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEY 559

Query:   372 DRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS 431
              RDEDH+AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W L +VL+EKY++S
Sbjct:   560 TRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWS 619

Query:   432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             +++A    DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct:   620 QEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 654

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0007243 "intracellular protein kinase cascade" evidence=ISS

GO:0050684 "regulation of mRNA processing" evidence=ISS

UNIPROTKB|E9PTN4 Srpk1 "Protein Srpk1" [Rattus norvegicus (taxid:10116)]

 Score = 598 (215.6 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
 Identities = 109/209 (52%), Positives = 149/209 (71%)

Query:   258 PNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY 317
             P+GD  E + NG+L     T    I  +   P  + +        LK K+ D GNACW +
Sbjct:   454 PSGDEQEREHNGALDSKGTTLPARIFINPLEPKNAEK--------LKVKIADLGNACWVH 505

Query:   318 KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDH 377
             K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATGD LF+PHSG++Y RDEDH
Sbjct:   506 KHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEDYTRDEDH 565

Query:   378 LALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND 437
             +AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W L +VL+EKY++ +++A  
Sbjct:   566 IALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLLEVLVEKYEWPQEEAAG 625

Query:   438 MADFLVPILDFVPEKRPTAAQCLTHPWIN 466
               DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct:   626 FTDFLLPMLELMPEKRATAAECLRHPWLN 654

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36616	DSK1_SCHPO	2, ., 7, ., 1, 1, ., 1	0.4395	0.8452	0.8235	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	530
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	9e-30
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-25
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	8e-22
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	2e-21
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	6e-21
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-20
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	4e-20
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-19
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-18
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-18
PTZ00284	467	PTZ00284, PTZ00284, protein kinase; Provisional	2e-18
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	3e-18
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	4e-18
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	9e-18
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-17
PTZ00284	467	PTZ00284, PTZ00284, protein kinase; Provisional	2e-17
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	5e-17
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	9e-17
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	3e-16
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	3e-16
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	1e-15
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	3e-15
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	3e-15
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	7e-15
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-14
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	2e-14
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	5e-14
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	5e-14
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	9e-14
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-13
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	1e-13
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-13
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	2e-13
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	2e-13
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	3e-13
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	3e-13
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-13
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-13
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-13
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	1e-12
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	1e-12
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	3e-12
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	3e-12
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	5e-12
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	5e-12
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-11
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	1e-11
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	2e-11
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	2e-11
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-11
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	2e-11
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-11
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	3e-11
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	3e-11
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	4e-11
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	5e-11
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	6e-11
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	6e-11
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	7e-11
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	8e-11
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	9e-11
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	1e-10
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-10
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	2e-10
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	3e-10
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	3e-10
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	3e-10
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	3e-10
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-10
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	4e-10
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	4e-10
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	4e-10
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	4e-10
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	4e-10
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	5e-10
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	1e-09
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	1e-09
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-09
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-09
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	2e-09
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-09
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-09
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-09
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	8e-09
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-08
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	1e-08
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	1e-08
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	2e-08
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	2e-08
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	2e-08
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	2e-08
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	3e-08
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-08
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-08
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	3e-08
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	3e-08
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	4e-08
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	5e-08
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	5e-08
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	6e-08
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	8e-08
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	9e-08
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	1e-07
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	1e-07
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	1e-07
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	2e-07
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	3e-07
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	3e-07
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	3e-07
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	4e-07
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-07
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	6e-07
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	6e-07
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	9e-07
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	1e-06
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	1e-06
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	2e-06
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	2e-06
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	3e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	3e-06
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	3e-06
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	3e-06
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	3e-06
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	4e-06
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	4e-06
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	4e-06
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	4e-06
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	4e-06
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	4e-06
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	5e-06
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	6e-06
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	6e-06
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	6e-06
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	8e-06
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	8e-06
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	9e-06
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	9e-06
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	1e-05
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	2e-05
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	2e-05
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	2e-05
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	2e-05
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	2e-05
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	3e-05
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	3e-05
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	3e-05
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	4e-05
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	4e-05
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	4e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	4e-05
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	4e-05
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	5e-05
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	5e-05
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	5e-05
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	6e-05
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	6e-05
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	7e-05
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	9e-05
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	1e-04
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	1e-04
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	1e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	1e-04
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	1e-04
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	1e-04
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	1e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-04
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	2e-04
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	3e-04
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	3e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	3e-04
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	3e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	3e-04
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	3e-04
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-04
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	4e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	4e-04
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	4e-04
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	4e-04
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	4e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	5e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	5e-04
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	6e-04
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	6e-04
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	7e-04
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	8e-04
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	8e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	0.001
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	0.001
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.001
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	0.001
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	0.001
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	0.001
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	0.001
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.002
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	0.002
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	0.002
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	0.002
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	0.002
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	0.002
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	0.002
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	0.002
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	0.002
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	0.003
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	0.003
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	0.003
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	0.003
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	0.003
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	0.003
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.003
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	0.003
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	0.003
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	0.004
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	0.004
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	0.004
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	0.004
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	0.004
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	0.004
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	0.004
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	0.004

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  116 bits (294), Expect = 9e-30
 Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 16/145 (11%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK--SAQHYTEAALDEIKILKQIAEGDPD 101
           Y +  KLG G F  V+LA D +T   VA+KV K    +   E  L EIKILK++      
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKL------ 54

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILV 160
               +V+L D F+        + +V EY  G +L  L+K      +     +     IL 
Sbjct: 55  KHPNIVRLYDVFEDED----KLYLVMEYCEGGDLFDLLK--KRGRLSEDEARFYLRQILS 108

Query: 161 GLDHLHRELSIIHTDLKPENVLLMS 185
            L++LH    I+H DLKPEN+LL  
Sbjct: 109 ALEYLH-SKGIVHRDLKPENILLDE 132

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  103 bits (259), Expect = 2e-25
 Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 15/137 (10%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGDPDDKKCVV 107
           LG G F TV+LA D +T   VA+K+  ++ +    E  L EI+ILK++      +   +V
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKL------NHPNIV 54

Query: 108 KLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH 166
           KL   F+    +  H+ +V EY  G +L  L+K  +   +    +  I   IL GL++LH
Sbjct: 55  KLYGVFE----DENHLYLVMEYCEGGSLKDLLK-ENEGKLSEDEILRILLQILEGLEYLH 109

Query: 167 RELSIIHTDLKPENVLL 183
               IIH DLKPEN+LL
Sbjct: 110 SN-GIIHRDLKPENILL 125

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 94.5 bits (236), Expect = 8e-22
 Identities = 41/162 (25%), Positives = 57/162 (35%), Gaps = 46/162 (28%)

Query: 306 KLVDFGNAC-WTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           KL DFG A      +     + T +Y  PEVLLG  Y    D+WS   I +EL TG   F
Sbjct: 137 KLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPF 196

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                      +D L  + + +G                                P    
Sbjct: 197 P---------GDDQLLELFKKIGK-------------------------------PKPPF 216

Query: 424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
              ++D S     +  D +  +L   PEKR TA + L HP+ 
Sbjct: 217 PPPEWDISP----EAKDLIRKLLVKDPEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 94.1 bits (235), Expect = 2e-21
 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 16/146 (10%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEGD 99
           Y V  +LG G F +V+LA + +T   VA+K  K    S +      L E+K L+++ E  
Sbjct: 1   YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMN--LREVKSLRKLNEHP 58

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
                 +VKL + F+ +      +  VFEY+  NL  L+K    +     +++ I + IL
Sbjct: 59  -----NIVKLKEVFREND----ELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQIL 109

Query: 160 VGLDHLHRELSIIHTDLKPENVLLMS 185
            GL H+H+     H DLKPEN+L+  
Sbjct: 110 QGLAHIHK-HGFFHRDLKPENLLVSG 134

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 92.5 bits (231), Expect = 6e-21
 Identities = 54/168 (32%), Positives = 75/168 (44%), Gaps = 31/168 (18%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDV 361
           KL DFG A       + +T+++ T  YR PE+LLGSK YST  D+WS  CI  E+ TG  
Sbjct: 138 KLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKP 197

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFG----GRYSRDFFNRHGDLRHIRRLRF 417
           LF    GD+   + D L  + ++LG    +   G      Y   F               
Sbjct: 198 LF---PGDS---EIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPK--------- 242

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
             L KVL  + D       +  D L  +L + P KR +A + L HP+ 
Sbjct: 243 -DLEKVL-PRLD------PEGIDLLSKMLQYNPAKRISAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 91.4 bits (228), Expect = 2e-20
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 27/151 (17%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE-----AALDEIKILKQIAEG 98
           Y    KLG G +  V+ A D +T   VALK  K      E      AL EI +LK++   
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALK--KIRLDNEEEGIPSTALREISLLKEL--- 55

Query: 99  DPDDKKC--VVKLLD--HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
                K   +VKLLD  H +        + +VFEY   +L   +       +  +++K I
Sbjct: 56  -----KHPNIVKLLDVIHTERK------LYLVFEYCDMDLKKYLDKRP-GPLSPNLIKSI 103

Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
            + +L GL + H    I+H DLKP+N+L+  
Sbjct: 104 MYQLLRGLAYCHSH-RILHRDLKPQNILINR 133

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 90.5 bits (225), Expect = 4e-20
 Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 17/146 (11%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA----ALDEIKILKQIAEGD 99
           Y    K+G G +  V+ A D  T   VA+K +   +  +E     AL EIK+LK++    
Sbjct: 1   YQKLGKIGEGTYGVVYKARDKLTGEIVAIK-KIKLRFESEGIPKTALREIKLLKEL---- 55

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
             +   ++KLLD F+H       + +VFE++  +L  LIK    RG+P  ++K   + +L
Sbjct: 56  --NHPNIIKLLDVFRH----KGDLYLVFEFMDTDLYKLIKDRQ-RGLPESLIKSYLYQLL 108

Query: 160 VGLDHLHRELSIIHTDLKPENVLLMS 185
            GL   H    I+H DLKPEN+L+ +
Sbjct: 109 QGLAFCHSH-GILHRDLKPENLLINT 133

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 86.5 bits (215), Expect = 4e-19
 Identities = 47/179 (26%), Positives = 58/179 (32%), Gaps = 56/179 (31%)

Query: 302 DLK-----------CKLVDFGNACWTYK--QFTNDIQ-TRQYRCPEVLLGSK-YSTPADL 346
           DLK            K+ DFG A    K          T  Y  PEVLLG   Y    D+
Sbjct: 123 DLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDV 182

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           WS   I +EL TG   F   +        D L L+  +L         G     D     
Sbjct: 183 WSLGVILYELLTGKPPFSGEN------ILDQLQLIRRIL---------GPPLEFDEP--- 224

Query: 407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                              +    SE    +  D +   L+  P KRPTA + L HPW 
Sbjct: 225 -------------------KWSSGSE----EAKDLIKKCLNKDPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 21/148 (14%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-----QKSAQHYTEAALDEIKILKQIAEG 98
           Y +  KLG G F TV+ A    T   VA+K+     +KS +  T  A  EI+IL+++   
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQT--ARREIRILRRL--- 55

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFH 157
                  +V+L+D F+    +  H+ +V EY    +L   +       +     K+I   
Sbjct: 56  ---SHPNIVRLIDAFE----DKDHLYLVMEYCEGGDLFDYLSR--GGPLSEDEAKKIALQ 106

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           IL GL++LH    IIH DLKPEN+LL  
Sbjct: 107 ILRGLEYLHSN-GIIHRDLKPENILLDE 133

Length = 260

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 29/177 (16%)

Query: 297 LLAAVDLKCKLVDFGNA----CWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFAC 351
           +L +     KL DFG A           T+ + TR YR PE+L+G   Y  P D+W+  C
Sbjct: 131 ILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGC 190

Query: 352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL-- 409
           I  EL  G+ LF    GD+   D D L L+ + LG +P                H +L  
Sbjct: 191 IMAELLDGEPLF---PGDS---DIDQLYLIQKCLGPLPP--------------SHQELFS 230

Query: 410 --RHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                  + F   ++    +  +  K ++   DFL   L   P++R T  + L HP+
Sbjct: 231 SNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPY 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional

 Score = 87.7 bits (217), Expect = 2e-18
 Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 12/162 (7%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPD 101
            R+ + S LG G F  V  AWD +   Y A+K+ ++   YT  A  EI+ ++++ + DP 
Sbjct: 129 QRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPA 188

Query: 102 DKKCVVKLLDHFKH-SGPNGQHVCMVFEYLGENLLTLI-KYADYRGVPLHMVKEICFHIL 159
           D+  ++K+  +F++ +G    H+C+V    G  LL  I K+  +    L    +I F   
Sbjct: 189 DRFPLMKIQRYFQNETG----HMCIVMPKYGPCLLDWIMKHGPFSHRHL---AQIIFQTG 241

Query: 160 VGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP--RKSGPP 199
           V LD+ H EL ++HTDLKPEN+ LM   D   DP   ++ PP
Sbjct: 242 VALDYFHTELHLMHTDLKPENI-LMETSDTVVDPVTNRALPP 282

Length = 467

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 12/148 (8%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQI-AEGD 99
           Y   +++G G + TV+ A D  T  +VALK   V  S +    + L EI +LKQ+ +   
Sbjct: 1   YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEH 60

Query: 100 PDDKKCVVKLLD--HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFH 157
           P+    +V+LLD  H   +      + +VFE++ ++L T +      G+P   +K++   
Sbjct: 61  PN----IVRLLDVCHGPRTD-RELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQ 115

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +L G+D LH    I+H DLKP+N+L+ S
Sbjct: 116 LLRGVDFLHSH-RIVHRDLKPQNILVTS 142

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 15/144 (10%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK---SAQHYTEAALDEIKILKQIAEG 98
            +Y V   +G G +  V    +  T   VA+K  K     +   + AL E+K+L+Q+   
Sbjct: 1   NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRH- 59

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
                + +V L + F+  G     + +VFEY+   LL L++ A   G+P   V+   + +
Sbjct: 60  -----ENIVNLKEAFRRKG----RLYLVFEYVERTLLELLE-ASPGGLPPDAVRSYIWQL 109

Query: 159 LVGLDHLHRELSIIHTDLKPENVL 182
           L  + + H   +IIH D+KPEN+L
Sbjct: 110 LQAIAYCHS-HNIIHRDIKPENIL 132

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 84.1 bits (209), Expect = 9e-18
 Identities = 47/145 (32%), Positives = 65/145 (44%), Gaps = 24/145 (16%)

Query: 326 TRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMEL 384
           TR YR PE+LL S  Y+   D+WS  CI  EL T   LF    G +Y    D L L++E+
Sbjct: 169 TRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLF---PGRDY---IDQLNLIVEV 222

Query: 385 LGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK--DANDMA-DF 441
           LG    +          F        +++ L   P       K   S+    A+  A D 
Sbjct: 223 LGTPSEE-------DLKFITSEKARNYLKSLPKKP-------KKPLSKLFPGASPEAIDL 268

Query: 442 LVPILDFVPEKRPTAAQCLTHPWIN 466
           L  +L F P+KR TA + L HP++ 
Sbjct: 269 LEKMLVFDPKKRITADEALAHPYLA 293

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 20/148 (13%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA-------ALDEIKILKQI 95
           RY    KLG G ++ V+ A D +T   VA+K  K      EA       AL EIK+L+++
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKL-GERKEAKDGINFTALREIKLLQEL 59

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEIC 155
                     ++ LLD F H      ++ +VFE++  +L  +IK       P   +K   
Sbjct: 60  ------KHPNIIGLLDVFGH----KSNINLVFEFMETDLEKVIKDKSIVLTPAD-IKSYM 108

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
              L GL++LH    I+H DLKP N+L+
Sbjct: 109 LMTLRGLEYLHS-NWILHRDLKPNNLLI 135

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional

 Score = 84.6 bits (209), Expect = 2e-17
 Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 24/171 (14%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           + ++ D G  C      T  + TR YR PEV+LG  +    D+WS  CI +EL TG +L+
Sbjct: 286 RVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLY 345

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAF--GGRYSRDFFNRHGDLR------HIRRL 415
           D H  DN     +HL LM + LG +P + A   G   +R  +N  G LR      H+ R+
Sbjct: 346 DTH--DNL----EHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARI 399

Query: 416 -RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
            R  P+ +V+ +           + D +  +L +  +KR  A Q  THP++
Sbjct: 400 ARARPVREVIRDDL---------LCDLIYGLLHYDRQKRLNARQMTTHPYV 441

Length = 467

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 80.6 bits (200), Expect = 5e-17
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 17/149 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
           +Y +  ++G G F  V+L           LK   +   ++   E AL+E+KILK++    
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKL---- 56

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPL--HMVKEICF 156
             +   ++K  + F+        +C+V EY  G +L   IK     G P     + +   
Sbjct: 57  --NHPNIIKYYESFEE----KGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFV 110

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            + + L +LH    I+H D+KP+N+ L S
Sbjct: 111 QLCLALKYLHSRK-ILHRDIKPQNIFLTS 138

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 82.1 bits (201), Expect = 9e-17
 Identities = 52/148 (35%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEGD 99
           Y +  KLG G F  V+LA D +    VALKV      S     E  L EI+IL  +    
Sbjct: 2   YRILRKLGEGSFGEVYLARDRKL---VALKVLAKKLESKSKEVERFLREIQILASL---- 54

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGV-PLHMVKEICFH 157
            +    +VKL D F+  G     + +V EY+ G +L  L+K    +G         I   
Sbjct: 55  -NHPPNIVKLYDFFQDEG----SLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQ 109

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           IL  L++LH    IIH D+KPEN+LL  
Sbjct: 110 ILSALEYLH-SKGIIHRDIKPENILLDR 136

Length = 384

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 23/163 (14%)

Query: 306 KLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           K+ DFG A     +  +T+ + TR YR PE+LL S  YS+P D+W+  CI  EL T   L
Sbjct: 139 KIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPL 198

Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F    G +   + D L  +  +LG  P         ++  +     L      RF P   
Sbjct: 199 F---PGSS---EIDQLYKICSVLG-TP---------TKQDWPEGYKLASKLGFRF-PQFA 241

Query: 423 VLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
                      +A+  A D +  +L + P+KRPTA+Q L HP+
Sbjct: 242 PTSLHQLIP--NASPEAIDLIKDMLRWDPKKRPTASQALQHPY 282

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 35/176 (19%)

Query: 297 LLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC 353
           +L   D + K+ DFG A    +     T+ + T  YR PEVLL S Y+TP D+WS  CI 
Sbjct: 138 ILVTSDGQVKIADFGLARIYSFEMA-LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIF 196

Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-----MPRKIAFGGRYSRDFFNRHGD 408
            EL     LF   S      + D L  + +++G+      PR ++      R  F     
Sbjct: 197 AELFRRRPLFRGTS------EADQLDKIFDVIGLPSEEEWPRNVSL----PRSSFPS--- 243

Query: 409 LRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
               R  +             F  +   +  D L  +L F P KR +A + L HP+
Sbjct: 244 -YTPRSFK------------SFVPEICEEGLDLLKKMLTFNPHKRISAFEALQHPY 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 61/192 (31%), Positives = 84/192 (43%), Gaps = 43/192 (22%)

Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC         EL        K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 147 SNIAVNEDC---------EL--------KILDFGLARHTDDEMTGYVATRWYRAPEIMLN 189

Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGG 396
              Y+   D+WS  CI  EL TG  LF    G ++    D L  +M L+G  P       
Sbjct: 190 WMHYNQTVDIWSVGCIMAELLTGKTLF---PGSDHI---DQLKRIMNLVGT-P------- 235

Query: 397 RYSRDFFNRHGDLRHIRR-LRFWPLNKVLIEKYDFSE--KDANDMA-DFLVPILDFVPEK 452
               +   +       R  ++  P       K DF E    AN +A D L  +L   P+K
Sbjct: 236 --DEELLQKI-SSESARNYIQSLPQMP----KKDFKEVFSGANPLAIDLLEKMLVLDPDK 288

Query: 453 RPTAAQCLTHPW 464
           R TAA+ L HP+
Sbjct: 289 RITAAEALAHPY 300

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 76.0 bits (187), Expect = 3e-15
 Identities = 55/169 (32%), Positives = 72/169 (42%), Gaps = 35/169 (20%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDV 361
           KL DFG A         F+N++ T  YR P+VLLGS+ YST  D+WS  CI  E+ TG  
Sbjct: 140 KLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRP 199

Query: 362 LFDPHSGDNYDRDEDHLALMMELLG-----MMPRKIAFGGRYSRDFFNR-HGDLRHIRRL 415
           LF    G N   +ED L  +  ++G       P  I+    Y   F      DL+ +   
Sbjct: 200 LF---PGTN---NEDQLLKIFRIMGTPTESTWPG-ISQLPEYKPTFPRYPPQDLQQL--- 249

Query: 416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                         F   D   + D L  +L   PE R +A   L HPW
Sbjct: 250 --------------FPHADPLGI-DLLHRLLQLNPELRISAHDALQHPW 283

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 25/151 (16%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILKQIA 96
           +     +G G FSTV LA + +T+   A+K+       ++    Y      E ++L ++ 
Sbjct: 3   FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKY---VKIEKEVLTRL- 58

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEI 154
               +    ++KL   F+      +++  V EY   GE LL  I+   Y  +     +  
Sbjct: 59  ----NGHPGIIKLYYTFQDE----ENLYFVLEYAPNGE-LLQYIRK--YGSLDEKCTRFY 107

Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
              IL+ L++LH    IIH DLKPEN+LL  
Sbjct: 108 AAEILLALEYLHS-KGIIHRDLKPENILLDK 137

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 74.9 bits (185), Expect = 7e-15
 Identities = 56/196 (28%), Positives = 76/196 (38%), Gaps = 48/196 (24%)

Query: 297 LLAAVDLKCKLVDFGNACWTY----KQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFAC 351
           LL A D   KL DFG A  ++    ++ T+ + TR YR PE+L G++ Y    D+WS  C
Sbjct: 133 LLIASDGVLKLADFGLAR-SFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGC 191

Query: 352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-----------MPRKIAFGGRYSR 400
           I  EL           GD+   D D L  + E LG            +P  + F      
Sbjct: 192 IFAELLLRVPFLP---GDS---DIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPF--- 242

Query: 401 DFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
                   L+ I                 F    ++D  D L  +L   P KR TA Q L
Sbjct: 243 ----PPTPLKQI-----------------FP-AASDDALDLLQRLLTLNPNKRITARQAL 280

Query: 461 THPWINVGPRLLEPSM 476
            HP+ +  P    PS 
Sbjct: 281 EHPYFSNDPAPTPPSQ 296

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 19/141 (13%)

Query: 48  SKLGWGHFSTVWLAWDTQTSHYVALKVQK--SAQHYTEAALDEIKILKQIAEGDPDDKKC 105
             LG G    V+      T    ALK       + + +  L E+K L+          + 
Sbjct: 7   KVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLR--------SCES 58

Query: 106 --VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
             VVK    F   G     + +V EY+ G +L  L+K      +P  ++  I   IL GL
Sbjct: 59  PYVVKCYGAFYKEGE----ISIVLEYMDGGSLADLLKK--VGKIPEPVLAYIARQILKGL 112

Query: 163 DHLHRELSIIHTDLKPENVLL 183
           D+LH +  IIH D+KP N+L+
Sbjct: 113 DYLHTKRHIIHRDIKPSNLLI 133

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 26/182 (14%)

Query: 306 KLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDV 361
           K+ DFG A       K  T  + T  YR PE+LLG   Y+T  D+W+  CI  EL     
Sbjct: 148 KIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKP 207

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR--LRFWP 419
           L    S      + + L L+++LLG     I  G            DL  + +  L   P
Sbjct: 208 LLPGKS------EIEQLDLIIQLLGTPNESIWPGFS----------DLPLVGKFTLPKQP 251

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAAT 479
            N  L  K+ +  +    + +FL   L + P+KR TA + L   +    P   EP M  T
Sbjct: 252 YNN-LKHKFPWLSEAGLRLLNFL---LMYDPKKRATAEEALESSYFKEKPLPCEPEMMPT 307

Query: 480 QP 481
            P
Sbjct: 308 FP 309

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 73.0 bits (180), Expect = 5e-14
 Identities = 58/207 (28%), Positives = 85/207 (41%), Gaps = 50/207 (24%)

Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNA--------CWTYKQFTNDIQTRQY 329
           S   I++D K PS      +L   D + KL DFG A               T+ + TR Y
Sbjct: 125 SGNVIHRDLK-PS-----NILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWY 178

Query: 330 RCPEVLLGS-KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMM 388
           R PE+LLGS +Y+   D+WS  CI  E+  G  LF   S  N       L  ++E++G  
Sbjct: 179 RAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLN------QLEKIIEVIGPP 232

Query: 389 PRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK--------DANDMA- 439
             +                D+  I+     P    +++      +         A+D A 
Sbjct: 233 SAE----------------DIESIKS----PFAATMLDSLPSRPRKPLDELLPKASDDAL 272

Query: 440 DFLVPILDFVPEKRPTAAQCLTHPWIN 466
           D L  +L F P KR TA + L HP++ 
Sbjct: 273 DLLKKLLVFNPNKRLTAEEALEHPYVA 299

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 19/163 (11%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDV 361
           KL DFG A       K ++N++ T  YR P+VLLGS +YST  D+W   CI +E+ATG  
Sbjct: 143 KLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRP 202

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
           LF P S D     ED L  +  +LG  P +  + G  S   F  +          F+P  
Sbjct: 203 LF-PGSTDV----EDQLHKIFRVLG-TPTEETWPGVSSNPEFKPY-------SFPFYP-P 248

Query: 422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
           + LI              +  +  L + P+KR +AA+ + HP+
Sbjct: 249 RPLINHAP-RLDRIPHGEELALKFLQYEPKKRISAAEAMKHPY 290

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 71.5 bits (176), Expect = 9e-14
 Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 15/144 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
           RY +  ++G G    V+ A D +T   VALK   +++        AL EIK L+      
Sbjct: 1   RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQAC---- 56

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
                 VVKLLD F    P+G    +V EY+  +L  +++  + R +P   VK     +L
Sbjct: 57  --QHPYVVKLLDVF----PHGSGFVLVMEYMPSDLSEVLRDEE-RPLPEAQVKSYMRMLL 109

Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
            G+ ++H    I+H DLKP N+L+
Sbjct: 110 KGVAYMH-ANGIMHRDLKPANLLI 132

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 71.8 bits (177), Expect = 1e-13
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 19/148 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEA--ALDEIKILKQIAEGD 99
           RY +   +G G +  V  A D +T   VA+K +        +A   L EIK+L+ +    
Sbjct: 1   RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHL---- 56

Query: 100 PDDKKCVVKLLDHFKHSGPNGQH-VCMVFEYLGENLLTLIKYADYRGVPL---HMVKEIC 155
               + ++ LLD  +   P   + V +V E +  +L  +IK       PL   H ++   
Sbjct: 57  --RHENIIGLLDILRPPSPEDFNDVYIVTELMETDLHKVIK----SPQPLTDDH-IQYFL 109

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
           + IL GL +LH   ++IH DLKP N+L+
Sbjct: 110 YQILRGLKYLHSA-NVIHRDLKPSNILV 136

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 71.1 bits (174), Expect = 1e-13
 Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 8/147 (5%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
           +Y   +++G G + TV+ A D  + H+VALK   VQ +      + + E+ +LK++   D
Sbjct: 1   QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFD 60

Query: 100 PDDKKCVVKLLDHFKHSGPNGQ-HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
             +   +V+L+D    S  + +  V +VFE++ ++L T +      G+P   +K++    
Sbjct: 61  HPN---IVRLMDVCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQF 117

Query: 159 LVGLDHLHRELSIIHTDLKPENVLLMS 185
           L GLD LH    I+H DLKPEN+L+ S
Sbjct: 118 LRGLDFLHAN-CIVHRDLKPENILVTS 143

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 55/177 (31%), Positives = 66/177 (37%), Gaps = 48/177 (27%)

Query: 306 KLVDFGNACWTYKQF---TNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDV 361
           KL DFG A          T+ + TR YR PE+LLG K YSTP D+WS  CI  EL +   
Sbjct: 138 KLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRP 197

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
           LF    G +   + D L  +   LG  P                            WP  
Sbjct: 198 LF---PGKS---EIDQLFKIFRTLG-TPDP------------------------EVWPKF 226

Query: 422 KVLIEKYDFSEKDANDMA-------------DFLVPILDFVPEKRPTAAQCLTHPWI 465
             L   Y FS      M              D L  +L + P KR TA Q L HP+ 
Sbjct: 227 TSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 57/177 (32%), Positives = 78/177 (44%), Gaps = 32/177 (18%)

Query: 299 AAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFAC 351
              DLK  + DFG A     +       T  + TR YR PE++L SK Y+   D+WS  C
Sbjct: 141 TNCDLK--ICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGC 198

Query: 352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR- 410
           I  E+ +   LF    G +Y      L L++ +LG  P         S++  N    LR 
Sbjct: 199 ILAEMLSNRPLF---PGKDY---LHQLNLILGVLGT-P---------SQEDLNCIISLRA 242

Query: 411 --HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
             +I+ L F P  KV   K  F   D     D L  +L F P KR T  + L HP++
Sbjct: 243 RNYIKSLPFKP--KVPWNKL-FPNAD-PKALDLLDKMLTFNPHKRITVEEALAHPYL 295

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 32/167 (19%)

Query: 306 KLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPA-DLWSFACICFELATGDVL 362
           KL DFG+    Y +  +T  I TR YR PE LL   Y  P  D+W+  C+ FE+ +   L
Sbjct: 139 KLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPL 198

Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSR----DFFNRHGDLRHIRRLRFW 418
           F    G N   + D +A + ++LG    ++    R SR    +F ++ G    +R+L   
Sbjct: 199 F---PGTN---ELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKG--TGLRKLL-- 248

Query: 419 PLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
                          +A+    D L  +L + P++R TA Q L HP+
Sbjct: 249 --------------PNASAEGLDLLKKLLAYDPDERITAKQALRHPY 281

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 11/143 (7%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAA--LDEIKILKQIAEGDPD 101
           Y +  K+G G FS V  A   +T  Y A+K  K      E    L EI+ L+++    P+
Sbjct: 1   YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRL-SPHPN 59

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVG 161
               +++L++        G+ + +VFE +  NL  LIK    R +P   VK   + +L  
Sbjct: 60  ----ILRLIEVL-FDRKTGR-LALVFELMDMNLYELIK-GRKRPLPEKRVKSYMYQLLKS 112

Query: 162 LDHLHRELSIIHTDLKPENVLLM 184
           LDH+HR   I H D+KPEN+L+ 
Sbjct: 113 LDHMHRN-GIFHRDIKPENILIK 134

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 50/177 (28%), Positives = 70/177 (39%), Gaps = 39/177 (22%)

Query: 306 KLVDFGNA--------CWTYK------QFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           K+ DFG A                   ++TN + TR YR PE+LLG + Y+T  D+W   
Sbjct: 155 KIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIG 214

Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAF-GGRYSRDFFNRHGDL 409
           C+  E+ T   +    S      D D L L+ +L G  P +  + G R        H   
Sbjct: 215 CVFAEMFTRRPILQGKS------DIDQLHLIFKLCGT-PTEETWPGWRSLPGCEGVHSFT 267

Query: 410 RHIRRL--RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
            + R L  RF  L                +  D L  +L   P KR TA+  L HP+
Sbjct: 268 NYPRTLEERFGKLGP--------------EGLDLLSKLLSLDPYKRLTASDALEHPY 310

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 69.5 bits (171), Expect = 3e-13
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 15/141 (10%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
            LG G F +V+LA D  T   +A+K   +   ++   EA   EI+IL  +          
Sbjct: 7   LLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSL------QHPN 60

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDH 164
           +V+     +    N   + +  EY+ G +L +L+K   +  +P  ++++    IL GL +
Sbjct: 61  IVRYYGSERDEEKN--TLNIFLEYVSGGSLSSLLK--KFGKLPEPVIRKYTRQILEGLAY 116

Query: 165 LHRELSIIHTDLKPENVLLMS 185
           LH    I+H D+K  N+L+ S
Sbjct: 117 LHSN-GIVHRDIKGANILVDS 136

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 69.5 bits (171), Expect = 3e-13
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 50/169 (29%)

Query: 302 DLKCKLVDFGNACW----TYKQFTNDIQ-TRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
           D   KL DFG A         + T  ++ T  +  PEV+ G +Y   AD+WS  C   E+
Sbjct: 137 DGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEM 196

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
           ATG   +            + +A +         KI   G                    
Sbjct: 197 ATGKPPWSEL--------GNPMAALY--------KIGSSG-------------------- 220

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                    E  +  E  + +  DFL   L   P+KRPTA + L HP++
Sbjct: 221 ---------EPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 69.5 bits (171), Expect = 4e-13
 Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 33/180 (18%)

Query: 302 DLKC-----------KLVDFGNA-CWTYKQ---FTNDIQTRQYRCPEVLLGS-KYSTPAD 345
           D+K            KL DFG A  +T +    +TN + T  YR PE+LLG+ +Y    D
Sbjct: 125 DIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVD 184

Query: 346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR 405
           +WS  CI  EL  G  +F    G     + + L  + EL G  P    + G     +F  
Sbjct: 185 MWSVGCILAELFLGKPIF---QGST---ELEQLEKIFELCG-SPTDENWPGVSKLPWFE- 236

Query: 406 HGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
             +L+  +  +     + L E   F         D L  +L   P+KR +A Q L H + 
Sbjct: 237 --NLKPKKPYK-----RRLREF--FKHLIDPSALDLLDKLLTLDPKKRISADQALQHEYF 287

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 55/171 (32%), Positives = 71/171 (41%), Gaps = 34/171 (19%)

Query: 306 KLVDFGNACWTY----KQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGD 360
           K+ DFG A   Y    K +T  + T  YR PE+LLG  +YST  D+WS  CI  EL T  
Sbjct: 146 KICDFGLA-REYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKK 204

Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF--- 417
            LF   S      + D L  + +LLG    KI  G      F      L   ++  F   
Sbjct: 205 PLFPGKS------EIDQLNKIFKLLGTPTEKIWPG------FSE----LPGAKKKTFTKY 248

Query: 418 --WPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
               L K       F     +D   D L  +L + P KR +A   L HP+ 
Sbjct: 249 PYNQLRKK------FPALSLSDNGFDLLNRLLTYDPAKRISAEDALKHPYF 293

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 35/186 (18%)

Query: 295 KELLAAVDLKCKLVDFGNACWTYKQF-------TNDIQTRQYRCPEVLLG-SKYSTPADL 346
             LL   D + K+ DFG A    +         T  + TR YR PE++L    Y+   D+
Sbjct: 134 GNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDV 193

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           WS  CI  EL     +F    G +Y    D L  ++++LG    +               
Sbjct: 194 WSVGCILAELLGRKPVF---KGKDY---VDQLNQILQVLGTPDEET-------------- 233

Query: 407 GDLRHIRRLRFWPLNKVL--IEKYDFSE--KDANDMA-DFLVPILDFVPEKRPTAAQCLT 461
             L  I   +     + L  I K  F     +AN +A D L  +L F P KR +  + L 
Sbjct: 234 --LSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALE 291

Query: 462 HPWINV 467
           HP++ +
Sbjct: 292 HPYLAI 297

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 55/168 (32%), Positives = 73/168 (43%), Gaps = 27/168 (16%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGDV 361
           K+ DFG A          T  + TR YR PE+LL  S+Y+T  D+WS  CI  EL     
Sbjct: 148 KICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKP 207

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
           LF    G +Y      L L+ ELLG    +          F       R+IR L + P  
Sbjct: 208 LF---PGKDY---VHQLKLITELLGSPSEE-------DLGFIRNEKARRYIRSLPYTP-- 252

Query: 422 KVLIEKYDFSEK--DANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
                +  F+     AN +A D L  +L F P KR T  + L HP++ 
Sbjct: 253 -----RQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLA 295

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 43/165 (26%), Positives = 57/165 (34%), Gaps = 55/165 (33%)

Query: 306 KLVDFGNACWTYKQFTNDIQ------TRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           KL+DFG +     Q ++         T  +  PEV+ G  Y   AD+WS      ELA G
Sbjct: 138 KLIDFGLS----AQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEG 193

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
                P+S       E      M+ L  +      G                        
Sbjct: 194 KP---PYS-------ELP---PMKALFKIATNGPPG------------------------ 216

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
               L     +S+    +  DFL   L   PEKRPTA Q L HP+
Sbjct: 217 ----LRNPEKWSD----EFKDFLKKCLQKNPEKRPTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 58/181 (32%), Positives = 81/181 (44%), Gaps = 24/181 (13%)

Query: 297 LLAAVDLKCKLVDFGNA-CW---TYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFAC 351
           LL   +   K+ DFG A        K  T ++ T+ YR PE+L+GS+ Y++  D+WS  C
Sbjct: 134 LLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGC 193

Query: 352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH 411
           I  EL    +LF   S          L L+ +LLG  P   A             G   H
Sbjct: 194 IFAELLGRRILFQAQS------PIQQLDLITDLLGT-PSLEAMRSA-------CEGARAH 239

Query: 412 I-RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR 470
           I R     P   VL   Y  S +  ++    L  +L F P+KR +AA  L HP+++ G R
Sbjct: 240 ILRGPHKPPSLPVL---YTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEG-R 295

Query: 471 L 471
           L
Sbjct: 296 L 296

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 35/153 (22%)

Query: 329 YRCPEVLLGSKYSTPA-DLWSFACICFELATGDVLF-----DPHSGDNYDRDEDHLALMM 382
           YR PE+LLG+++ T A D+W+  CI  EL T + +F          + + RD+  L  + 
Sbjct: 181 YRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQ--LERIF 238

Query: 383 ELLGM-----------MPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS 431
           E+LG            MP        Y          ++  +   +   +  L +  +  
Sbjct: 239 EVLGTPTEKDWPDIKKMPE-------YDTL-------MKDFKTKTYP--SNSLAKWMEKH 282

Query: 432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
           +K  +   D L  +L++ P KR TA + L HP+
Sbjct: 283 KKPDSQGFDLLRKLLEYDPTKRITAEEALEHPY 315

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 18/140 (12%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++      +   
Sbjct: 7   KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL------NHPN 60

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLD-- 163
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 61  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFC 116

Query: 164 HLHRELSIIHTDLKPENVLL 183
           H HR   ++H DLKP+N+L+
Sbjct: 117 HSHR---VLHRDLKPQNLLI 133

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 15/143 (10%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A D  T   VALK  +     +     AL EI +L+ ++E        
Sbjct: 8   KIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESI-----Y 62

Query: 106 VVKLLD--HFKHSGPNGQHVCMVFEYLGENLLTLI---KYADYRGVPLHMVKEICFHILV 160
           +V+LLD  H +        + +VFEYL  +L   +        R +P   +K   + +L 
Sbjct: 63  IVRLLDVEHVEEKNGKPS-LYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLK 121

Query: 161 GLDHLHRELSIIHTDLKPENVLL 183
           G+ H H+   ++H DLKP+N+L+
Sbjct: 122 GVAHCHK-HGVMHRDLKPQNLLV 143

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAW--DTQTSHYVALKVQKSAQHYTE----AALDEIKILKQIA 96
           +Y ++  +G G +  V+ A   + +     A+K  K  +        +A  EI +L+++ 
Sbjct: 1   KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLREL- 59

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKY---ADYRGVPLHMVKE 153
                  + VV L++ F       + V ++F+Y   +L  +IK+   A    +P  MVK 
Sbjct: 60  -----KHENVVSLVEVFLE--HADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKS 112

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           + + IL G+ +LH    ++H DLKP N+L+M 
Sbjct: 113 LLWQILNGVHYLHSNW-VLHRDLKPANILVMG 143

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 24/165 (14%)

Query: 304 KCKLVDFG---NACWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATG 359
             K+ D G         K +T++I T  YR PEVLLGS  YSTP D+WS  CI  E++  
Sbjct: 149 LLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRK 208

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
             LF    GD+   +   L  + +LLG    ++  G    RD+        H      +P
Sbjct: 209 QPLF---PGDS---ELQQLLHIFKLLGTPTEQVWPGVSKLRDW--------HE-----FP 249

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
             K         +     + D L  +L + P KR +A   LTHP+
Sbjct: 250 QWKPQDLSRAVPDLSPEGL-DLLQKMLRYDPAKRISAKAALTHPY 293

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 16/135 (11%)

Query: 53  GHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQI---AEGDPDDKKCVVKL 109
           G +  V+LA    T    A+KV K A    +  +D++   + I   A+        VVKL
Sbjct: 4   GAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSP-----YVVKL 58

Query: 110 LDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRE 168
              F+      +++ +V EYL G +L +L++  +   +   + +     I++ L++LH  
Sbjct: 59  YYSFQGK----KNLYLVMEYLPGGDLASLLE--NVGSLDEDVARIYIAEIVLALEYLHS- 111

Query: 169 LSIIHTDLKPENVLL 183
             IIH DLKP+N+L+
Sbjct: 112 NGIIHRDLKPDNILI 126

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 26/171 (15%)

Query: 300 AVDLKC--KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFEL 356
           AV+  C  K++DFG A  T  + T  + TR YR PEV+L    Y+   D+WS  CI  E+
Sbjct: 150 AVNEDCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEM 209

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
            TG  LF  H         DHL  +ME++     K+   G  S++F  +         ++
Sbjct: 210 LTGKPLFKGH---------DHLDQLMEIM-----KVT--GTPSKEFVQKLQSEDAKNYVK 253

Query: 417 FWPLNKVLIEKYDFSE--KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
             P       K DF     +AN +A + L  +L    E R TAA+ L HP+
Sbjct: 254 KLP----RFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPY 300

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 13/145 (8%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE---AALDEIKILKQIAEGDP 100
           Y   +++G G +  V+ A + +T   VALK  +           A+ EIK+L+++     
Sbjct: 1   YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKL----- 55

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILV 160
                +V+L +    S   G  + MVFEY+  +L  L+   + +      +K     +L 
Sbjct: 56  -RHPNIVRLKE-IVTSKGKGS-IYMVFEYMDHDLTGLLDSPEVKFTESQ-IKCYMKQLLE 111

Query: 161 GLDHLHRELSIIHTDLKPENVLLMS 185
           GL +LH    I+H D+K  N+L+ +
Sbjct: 112 GLQYLHSN-GILHRDIKGSNILINN 135

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 59/186 (31%), Positives = 83/186 (44%), Gaps = 37/186 (19%)

Query: 295 KELLAAVDLKCKLVDFG------NACWTYKQFTNDIQTRQYRCPEVLLGS---KYSTPAD 345
           K +LA  D K K+ DFG      N   T   +T+ + TR YR PE L GS   KY+   D
Sbjct: 132 KNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPE-LCGSFFSKYTPAID 190

Query: 346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKI--AFGGRYSRDFF 403
           +WS  CI  E+ TG  LF    G N       L L+ +LLG    +         +R + 
Sbjct: 191 IWSIGCIFAEVLTGKPLF---PGKNVVH---QLDLITDLLGTPSPETISRVRNEKARRY- 243

Query: 404 NRHGDLRHIRRLRFWPLNKVLIEKYDFSEK--DANDMA-DFLVPILDFVPEKRPTAAQCL 460
                L  +R+ +  P          FS+K  +A+ +A   L  +L F P+ RPTA + L
Sbjct: 244 -----LSSMRKKQPVP----------FSQKFPNADPLALRLLERLLAFDPKDRPTAEEAL 288

Query: 461 THPWIN 466
             P+  
Sbjct: 289 ADPYFK 294

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 55/198 (27%), Positives = 83/198 (41%), Gaps = 46/198 (23%)

Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNA-CWTYKQ------FTNDIQTRQYR 330
           SN  +N+DC         EL        ++ DFG A   +          T  + TR YR
Sbjct: 136 SNLLVNEDC---------EL--------RIGDFGMARGLSSSPTEHKYFMTEYVATRWYR 178

Query: 331 CPEVLLGS-KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMP 389
            PE+LL   +Y+T  D+WS  CI  E+     LF    G NY      L L++ +LG   
Sbjct: 179 APELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLF---PGKNY---VHQLKLILSVLGSPS 232

Query: 390 RKI--AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILD 447
            ++    G    R +     +L   + +   P +K+      F +    +  D L  +L 
Sbjct: 233 EEVLNRIGSDRVRKYIQ---NLPRKQPV---PWSKI------FPKASP-EALDLLSQMLQ 279

Query: 448 FVPEKRPTAAQCLTHPWI 465
           F PE+R T  Q L HP++
Sbjct: 280 FDPEERITVEQALQHPFL 297

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 21/147 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD----EIKILKQIAEG 98
            Y +   +G G F  V+   + +T  +VA+K Q S +   E AL     EI +LK +   
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIK-QISLEKIKEEALKSIMQEIDLLKNL--- 56

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGEN--LLTLIKYADYRGVPLHMVKEICF 156
                  +VK +   +        + ++ EY  EN  L  +IK   +   P  +V    +
Sbjct: 57  ---KHPNIVKYIGSIE----TSDSLYIILEYA-ENGSLRQIIK--KFGPFPESLVAVYVY 106

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            +L GL +LH +  +IH D+K  N+L 
Sbjct: 107 QVLQGLAYLHEQ-GVIHRDIKAANILT 132

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 43/174 (24%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGDV 361
           KL DFG A       + +T+ + TR YR PE+L+G +KY    D+W+  C+  E+ TG+ 
Sbjct: 140 KLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEP 199

Query: 362 LFDPHSGDNYDRDEDHLALMMELLG-MMPRKIAFGGRYSRDFFN--------RHGDLRHI 412
           LF    GD+   D D L  +++ LG ++PR         ++ F         R  +++ I
Sbjct: 200 LF---PGDS---DIDQLYHIIKCLGNLIPRH--------QEIFQKNPLFAGMRLPEVKEI 245

Query: 413 RRL--RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
             L  RF  L+ +++              D     L   P+ RP+++Q L H +
Sbjct: 246 EPLEKRFPKLSGLVL--------------DLAKQCLRIDPDDRPSSSQLLHHEF 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 55/181 (30%), Positives = 77/181 (42%), Gaps = 36/181 (19%)

Query: 302 DLKC-----------KLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPA-D 345
           D+KC           KL DFG A     +    +TN + T  YR PE+LLG +   PA D
Sbjct: 141 DIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAID 200

Query: 346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR 405
           +WS  CI  EL T   +F        +++   L L+  L G  P    +       +FN 
Sbjct: 201 VWSCGCILGELFTKKPIF------QANQELAQLELISRLCGS-PCPAVWPDVIKLPYFNT 253

Query: 406 HGDLR-HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
               + + RRLR         E++ F    A D+ D +   L   P KR TA + L  PW
Sbjct: 254 MKPKKQYRRRLR---------EEFSFIPTPALDLLDHM---LTLDPSKRCTAEEALNSPW 301

Query: 465 I 465
           +
Sbjct: 302 L 302

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 63.1 bits (153), Expect = 6e-11
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 23/173 (13%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDV 361
           KL DFG A       K ++N++ T  YR P++LLGS  YST  D+W   CI +E++TG  
Sbjct: 144 KLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRP 203

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
           LF P S       E+ L  +  +LG  P +  + G  S + F  +    +  + R   L+
Sbjct: 204 LF-PGS-----TVEEQLHFIFRILG-TPTEETWPGILSNEEFKSY----NYPKYRADCLH 252

Query: 422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN-VGPRLLE 473
                    + +  +D A+ L  +L F   KR +A + + HP+ + +G R+ +
Sbjct: 253 N-------HAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHCLGERIHK 298

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 56/200 (28%), Positives = 79/200 (39%), Gaps = 60/200 (30%)

Query: 305 CKLVDFGNA-CWTY----------------KQFTNDIQTRQYRCPEVLLGS-KYSTPADL 346
           CK+ DFG A  + Y                ++ T+ + T  YR PE+L+G+ KY    D+
Sbjct: 158 CKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDM 217

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           WS  CI  EL TG  LF    G+N   + D L  + ELLG  P +               
Sbjct: 218 WSVGCIFAELLTGKPLF---PGEN---EIDQLGRIFELLG-TPNEDN------------- 257

Query: 407 GDLRHIRRLRFWPLNKVL--------IEKYDFSE--KDANDMA-DFLVPILDFVPEKRPT 455
                      WP  K L         +  D      +A+D A D L  +L   P +R +
Sbjct: 258 -----------WPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERIS 306

Query: 456 AAQCLTHPWINVGPRLLEPS 475
           A + L H +    P   +PS
Sbjct: 307 AKEALKHEYFKSDPLPCDPS 326

Length = 335

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 23/175 (13%)

Query: 297 LLAAVDLKCKLVDFG----NACWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFAC 351
           LL + D   K+ DFG     +    + +++ + TR YR PE+L G+ KY    DLW+  C
Sbjct: 130 LLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGC 189

Query: 352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH 411
           I  EL  G  LF    G+N   D + LA++   LG    +   G             L  
Sbjct: 190 IFAELLNGSPLFP---GEN---DIEQLAIVFRTLGTPNEETWPGLT----------SLPD 233

Query: 412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             ++ F     + +E+  F +     + D L  +L + P KR +AA+ L HP+  
Sbjct: 234 YNKITFPESKPIPLEEI-FPDASPEAL-DLLKGLLVYDPSKRLSAAEALRHPYFT 286

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 62.9 bits (153), Expect = 9e-11
 Identities = 54/174 (31%), Positives = 77/174 (44%), Gaps = 32/174 (18%)

Query: 301 VDLKC--KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELA 357
           ++  C  K+ DFG A     Q T  + TR YR PE++L   KY    D+WS  CI  E+ 
Sbjct: 141 INENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEML 200

Query: 358 TGDVLFDPHSGDNYDRDEDHL---ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR 414
            G  LF           +DH+   +++ +LLG  P           D  N       +R 
Sbjct: 201 EGKPLFP---------GKDHVNQFSIITDLLGTPP----------DDVINTICSENTLRF 241

Query: 415 LRFWPLNKVLIEKYDFSEKDAN---DMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           ++  P      E   FSEK  N      D L  +L F P+KR +AA+ L HP++
Sbjct: 242 VQSLPKR----EPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYL 291

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 41/191 (21%)

Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 149 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 191

Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGG 396
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G    ++    
Sbjct: 192 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELL--- 242

Query: 397 RYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK--DANDMA-DFLVPILDFVPEKR 453
                  +      +I+ L   P       K +F+     AN +A D L  +L    +KR
Sbjct: 243 ----KKISSESARNYIQSLTQMP-------KMNFANVFIGANPLAVDLLEKMLVLDSDKR 291

Query: 454 PTAAQCLTHPW 464
            TAAQ L H +
Sbjct: 292 ITAAQALAHAY 302

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 35/169 (20%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDV 361
           KL DFG A       + +T+++ T  YR PE+LLGS+ YSTP D+WS  CI  E+     
Sbjct: 139 KLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRP 198

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDF---FNRHGDLRHIRRLRFW 418
           LF    GD+   + D L  +   LG     +  G     D+   F +            W
Sbjct: 199 LF---PGDS---EIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPK------------W 240

Query: 419 P---LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
               L+KV+    +  E    D  D L  +L + P KR +A   L HP+
Sbjct: 241 ARQDLSKVV---PNLDE----DGLDLLSKMLVYDPAKRISAKAALQHPY 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 52/163 (31%), Positives = 72/163 (44%), Gaps = 23/163 (14%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDV 361
           KL DFG A       + +T+++ T  YR PEVLLGS +YSTP D+WS   I  E+AT   
Sbjct: 141 KLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKP 200

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
           LF  H     D + D L  +  +LG     +  G     D+ N             W   
Sbjct: 201 LF--HG----DSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPK---------WKKG 245

Query: 422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
            +     +  E    D  D L  +L + P KR +A + L HP+
Sbjct: 246 SLRSAVKNLDE----DGLDLLEKMLIYDPAKRISAKKALNHPY 284

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 53/177 (29%), Positives = 75/177 (42%), Gaps = 33/177 (18%)

Query: 297 LLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACI 352
           LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  CI
Sbjct: 131 LLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCI 190

Query: 353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGG-----RYSRDFFNRHG 407
             E+ T   LF    GD+   + D L  +   LG  P ++ + G      Y   F     
Sbjct: 191 FAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSLPDYKPSF----- 238

Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                 +      +KV+            D  D L  +L + P KR +A   L HP+
Sbjct: 239 -----PKWARQDFSKVV-------PPLDEDGRDLLSQMLHYDPNKRISAKAALAHPF 283

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 61.2 bits (148), Expect = 3e-10
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 22/163 (13%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDV 361
           KL DFG A       K ++N++ T  YR P+VLLGS +YSTP D+W   CI +E+ATG  
Sbjct: 143 KLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRP 202

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
           +F P S       ++ L L+  LLG  P +  + G  S + F  +       + R  PL 
Sbjct: 203 MF-PGS-----TVKEELHLIFRLLG-TPTEETWPGITSNEEFRSYL----FPQYRAQPL- 250

Query: 422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                  + + +   D  D L  +L +  + R +A   L H +
Sbjct: 251 ------INHAPRLDTDGIDLLSSLLLYETKSRISAEAALRHSY 287

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 61.6 bits (149), Expect = 3e-10
 Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 53/234 (22%)

Query: 282 INKDCKRPSRSRRKELLAAVDLKCKLVDFG---NACWTYKQFTNDIQTRQYRCPEVLLGS 338
           I++D K PS      ++   D   K++DFG    AC  +   T  + TR YR PEV+LG 
Sbjct: 145 IHRDLK-PS-----NIVVKSDCTLKILDFGLARTACTNF-MMTPYVVTRYYRAPEVILGM 197

Query: 339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRY 398
            Y    D+WS  CI  EL  G V+F         +  DH+    +++  +       G  
Sbjct: 198 GYKENVDIWSVGCIMGELVKGSVIF---------QGTDHIDQWNKVIEQL-------GTP 241

Query: 399 SRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF------------SEKD---ANDMADFLV 443
           S +F N     R    +R +  N+       F            SE+D    +   D L 
Sbjct: 242 SAEFMN-----RLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLS 296

Query: 444 PILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKD 497
            +L   P+KR +  + L HP+I V     +P+ A   P      I D    E++
Sbjct: 297 KMLVIDPDKRISVDEALRHPYITV---WYDPAEAEAPPP----QIYDAQLEERE 343

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 61.2 bits (148), Expect = 3e-10
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 23/171 (13%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDV 361
           KL DFG A       K ++N++ T  YR P+VLLGS +YST  D+W   CI FE+A+G  
Sbjct: 144 KLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRP 203

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
           LF P S       ED L L+  LLG  P +  + G  S D F  +    +  + +  PL 
Sbjct: 204 LF-PGS-----TVEDELHLIFRLLG-TPTEETWPGISSNDEFKNY----NFPKYKPQPL- 251

Query: 422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI-NVGPRL 471
                  + + +   +  + L   L +  +KR +A + + H +  ++G R+
Sbjct: 252 ------INHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRSLGTRI 296

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 18/143 (12%)

Query: 48  SKLGWGHFSTVWLAWDTQTSHYVALKVQ-KSAQHYTEAA-----LDEIKILKQIAEGDPD 101
            KLG G F  V+            ++V  K+ +           L E +I++++      
Sbjct: 5   KKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKL------ 58

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILV 160
           D   +VKLL       P    + +V EY+ G +LL  ++    + + L  +      I  
Sbjct: 59  DHPNIVKLLGVCTEEEP----LMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIAR 114

Query: 161 GLDHLHRELSIIHTDLKPENVLL 183
           G+++L    + IH DL   N L+
Sbjct: 115 GMEYLES-KNFIHRDLAARNCLV 136

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 27/164 (16%)

Query: 306 KLVDFGNA-CWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           KL DFG A  ++ +   T  + T  YR PEVLL S Y+TP D+WS  CI  E+     LF
Sbjct: 148 KLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLF 207

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
               G++   + D L  + +L+G+ P        + RD     G         F P    
Sbjct: 208 ---CGNS---EADQLGKIFDLIGLPPED-----DWPRDVTLPRGA--------FSPRGPR 248

Query: 424 LIEKY--DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
            ++    +  E      A  L+ +L F P KR +A + L HP+ 
Sbjct: 249 PVQSVVPEIEESG----AQLLLEMLTFNPHKRISAFRALQHPFF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 60.8 bits (147), Expect = 4e-10
 Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 26/189 (13%)

Query: 279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNAC----WTYKQFTNDIQTRQYRCPEV 334
           N+ +++D K       + LL + +   KL DFG A      +   +T  + TR YR PE+
Sbjct: 119 NDIVHRDIKP------ENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPEL 172

Query: 335 LLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAF 394
           LLG+ Y    D+WS  CI  EL+ G  LF   S      + D L  + ++LG +P +   
Sbjct: 173 LLGAPYGKAVDMWSVGCILGELSDGQPLFPGES------EIDQLFTIQKVLGPLPAE-QM 225

Query: 395 GGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRP 454
              YS   F  HG       LRF  +N     +  +    +  + D +  +L   P  R 
Sbjct: 226 KLFYSNPRF--HG-------LRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRY 276

Query: 455 TAAQCLTHP 463
              QCL HP
Sbjct: 277 LTEQCLNHP 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 60.8 bits (147), Expect = 4e-10
 Identities = 43/148 (29%), Positives = 79/148 (53%), Gaps = 9/148 (6%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTS-HYVALK---VQKSAQHYTEAALDEIKILKQIAEG 98
           +Y   +++G G +  V+ A D +    +VALK   VQ   +    + + E+ +L+ +   
Sbjct: 2   QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF 61

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQ-HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFH 157
           +  +   VV+L D    S  + +  + +VFE++ ++L T +      GVP   +K++ F 
Sbjct: 62  EHPN---VVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQ 118

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +L GLD LH    ++H DLKP+N+L+ S
Sbjct: 119 LLRGLDFLHSH-RVVHRDLKPQNILVTS 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 61.1 bits (148), Expect = 4e-10
 Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 30/172 (17%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGD 360
           D + K++DFG A     + T  + TR YR PEV+L    Y+   D+WS  CI  E+ TG 
Sbjct: 153 DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGK 212

Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL---RHIRRLRF 417
            LF    G +Y    D L  ++++ G +P           +F  +  D     +I+ L  
Sbjct: 213 TLF---KGKDY---LDQLTQILKVTG-VP---------GPEFVQKLEDKAAKSYIKSLPK 256

Query: 418 WPLNKVLIEKYDFSE--KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
           +P       + DFS     A+  A D L  +L+   +KR TA + L HP+ +
Sbjct: 257 YP-------RKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFD 301

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 27/150 (18%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA---------ALDEIKILK 93
           +Y   SK+G G +  V+   + +T   VA+K       + E+         AL EI++LK
Sbjct: 2   KYEKLSKIGEGSYGVVFKCRNRETGQIVAIK------KFVESEDDPVIKKIALREIRMLK 55

Query: 94  QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKE 153
           Q+   +      +V L++ F+      + + +VFEY    +L  ++  + RGVP H++K+
Sbjct: 56  QLKHPN------LVNLIEVFRRK----RKLHLVFEYCDHTVLNELE-KNPRGVPEHLIKK 104

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           I +  L  ++  H+  + IH D+KPEN+L+
Sbjct: 105 IIWQTLQAVNFCHKH-NCIHRDVKPENILI 133

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK-SAQHYTEAALDEIKILKQIAEGDPDD 102
           + +  K+G G F  V+ A   +T   VA+KV K  ++   E  ++EI+ILK+        
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKC------K 55

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVG 161
              +VK    +         + +V E+  G +L  L+K  + + +    +  +C  +L G
Sbjct: 56  HPNIVKYYGSYLKKD----ELWIVMEFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKG 110

Query: 162 LDHLHRELSIIHTDLKPENVLLMS 185
           L++LH    IIH D+K  N+LL S
Sbjct: 111 LEYLH-SNGIIHRDIKAANILLTS 133

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 25/162 (15%)

Query: 306 KLVDFGNA-CWTYKQFTNDIQ-TRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           KL DFG A  ++++     +  T  YR PEVLL S Y+TP DLWS  CI  E+     LF
Sbjct: 150 KLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLF 209

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
              S      D D L  +++++G +P +         D+         + R  F   +  
Sbjct: 210 RGSS------DVDQLGKILDVIG-LPGE--------EDWPRDVA----LPRQAFHSKSAQ 250

Query: 424 LIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
            IEK+     D +++  D L+  L F P KR +A   L+HP+
Sbjct: 251 PIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 289

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 29/179 (16%)

Query: 302 DLKCKLVDFGNACWTYKQF--TNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           D   K++DFG A      F  T  + TR YR PEV+LG  Y    D+WS  CI  E+  G
Sbjct: 154 DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRG 213

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG-DLRHIRRLR-- 416
            VLF    G ++    D    ++E LG  P         S +F +R    +R+    R  
Sbjct: 214 TVLF---PGTDH---IDQWNKIIEQLG-TP---------SDEFMSRLQPTVRNYVENRPK 257

Query: 417 --------FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
                    +P      +    ++  A+   D L  +L   PEKR +    L HP+INV
Sbjct: 258 YAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINV 316

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 28/144 (19%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKV--------QKSAQHYTEAALDEIKILKQIAEGDPD 101
           LG G F  V L     +  Y ALK+         K  +H     L+E +IL+ I      
Sbjct: 9   LGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEH----VLNEKRILQSI------ 58

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHIL 159
               +V L   F+       ++ +V EY+  GE L + ++       P  + +     ++
Sbjct: 59  RHPFLVNLYGSFQD----DSNLYLVMEYVPGGE-LFSHLR--KSGRFPEPVARFYAAQVV 111

Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
           + L++LH  L I++ DLKPEN+LL
Sbjct: 112 LALEYLHS-LDIVYRDLKPENLLL 134

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 297 LLAAVDLKCKLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACI 352
           LL + + K KL DFG +             + T  Y  PEVLLG   YS  +D+WS   I
Sbjct: 124 LLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVI 183

Query: 353 CFEL 356
            +EL
Sbjct: 184 LYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 59.3 bits (143), Expect = 2e-09
 Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 26/171 (15%)

Query: 300 AVDLKCKL--VDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFEL 356
           AV+  C+L  +DFG A     + T  + TR YR PE++L    Y+   D+WS  CI  EL
Sbjct: 150 AVNEDCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAEL 209

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
             G  LF    G++Y    D L  +ME++G    ++       +   + H   ++I+ L 
Sbjct: 210 LKGKALF---PGNDYI---DQLKRIMEVVGTPSPEVL------KKISSEHAR-KYIQSLP 256

Query: 417 FWPLNKVLIEKYDFSE--KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
             P       + D  +  + AN +A D L  +L    +KR +A++ L HP+
Sbjct: 257 HMP-------QQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAHPY 300

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 9/132 (6%)

Query: 53  GHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH 112
           G F +V+LA    T  Y A+KV K +    +  +  +K  + I      +   V KL   
Sbjct: 7   GAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQ-GESPYVAKLYYS 65

Query: 113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSI 171
           F+    +  ++ +V EYL G +  +LIK     G+P    K+    +++G++ LH+   I
Sbjct: 66  FQ----SKDYLYLVMEYLNGGDCASLIKTLG--GLPEDWAKQYIAEVVLGVEDLHQR-GI 118

Query: 172 IHTDLKPENVLL 183
           IH D+KPEN+L+
Sbjct: 119 IHRDIKPENLLI 130

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 17/149 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
            + V  KLG G + +V+       + + ALK   +   +Q   E A++EI+IL  +   +
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPL--HMVKEICF 156
                     +  +K +  +G  +C+V EY    +L   I     +   +    +  I  
Sbjct: 61  ----------IISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFI 110

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            +L GL  LH E  I+H DLK  N+LL++
Sbjct: 111 QLLRGLQALH-EQKILHRDLKSANILLVA 138

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 57.1 bits (139), Expect = 4e-09
 Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 30/145 (20%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILKQIAEGDPDD 102
           LG G F  V L     T    A+KV       ++    +T     E  IL +I       
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLT---ERNILSRI------- 50

Query: 103 KKC--VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHI 158
                +VKL   F+      + + +V EY   GE L + +             +     I
Sbjct: 51  -NHPFIVKLHYAFQ----TEEKLYLVLEYAPGGE-LFSHLS--KEGRFSEERARFYAAEI 102

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
           ++ L++LH  L II+ DLKPEN+LL
Sbjct: 103 VLALEYLHS-LGIIYRDLKPENILL 126

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 19/151 (12%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-----VQKSAQHYTEAALDEIKILKQIA 96
             Y +  KLG G F  V+ A   +T   VALK      +K     T  AL EIKILK++ 
Sbjct: 8   RDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPIT--ALREIKILKKLK 65

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQH----VCMVFEYLGENLLTLIKYADYRGVPLHMVK 152
                    VV L+D         +     V MV  Y+  +L  L++    +      +K
Sbjct: 66  H------PNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKLTESQ-IK 118

Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENVLL 183
                +L G+++LH    I+H D+K  N+L+
Sbjct: 119 CYMLQLLEGINYLHENH-ILHRDIKAANILI 148

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 57.1 bits (136), Expect = 1e-08
 Identities = 40/219 (18%), Positives = 63/219 (28%), Gaps = 47/219 (21%)

Query: 297 LLAAVDLKCKLVDFGNACW---------TYKQFTNDIQTRQYRCPEVLLGS---KYSTPA 344
           LL       KL+DFG A                +  + T  Y  PEVLLG      S+ +
Sbjct: 133 LLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSS 192

Query: 345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN 404
           D+WS     +EL TG   F+                                        
Sbjct: 193 DIWSLGITLYELLTGLPPFEGEKNS---------------------------------SA 219

Query: 405 RHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
               L+ I  L    L   L       E  +   +D L  +L   P+ R +++  L+H  
Sbjct: 220 TSQTLKIILELPTPSLASPL--SPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDL 277

Query: 465 INVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAME 503
           +              +P D+           +    ++ 
Sbjct: 278 LAHLKLKESDLSDLLKPDDSAPLRLSLPPSLEALISSLN 316

Length = 384

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 30/150 (20%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
           YV   KLG G ++TV+      T + VALK              EI++  +  EG P   
Sbjct: 7   YVKLDKLGEGTYATVFKGRSKLTENLVALK--------------EIRLEHE--EGAPCTA 50

Query: 104 KCVVKLLDHFKHSGPNGQH--------VCMVFEYLGENLLTLIKYADYRG--VPLHMVKE 153
              V LL + KH+     H        + +VFEYL  +L    +Y D  G  + +H VK 
Sbjct: 51  IREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLDSDLK---QYLDNCGNLMSMHNVKI 107

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             F +L GL + H+   I+H DLKP+N+L+
Sbjct: 108 FMFQLLRGLSYCHKR-KILHRDLKPQNLLI 136

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 10/85 (11%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDV 361
           KL DFG A       + FT+++ T  YR PE+LLGS+ YSTP D+WS  CI  E+     
Sbjct: 143 KLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKP 202

Query: 362 LFDPHSGDNYDRDEDHLALMMELLG 386
           LF    GD+   + D L  +  +LG
Sbjct: 203 LF---PGDS---EIDELFKIFRILG 221

Length = 294

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 24/148 (16%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK--SAQHYTEAALDEIKILKQIAEGDPD 101
           +    KLG G ++TV+   +  T   VALK     + +     A+ EI ++K++   +  
Sbjct: 2   FKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHEN-- 59

Query: 102 DKKCVVKLLD--HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVP----LHMVKEIC 155
               +V+L D  H ++       + +VFEY+ ++L    KY D  GV      + VK   
Sbjct: 60  ----IVRLHDVIHTENK------LMLVFEYMDKDLK---KYMDTHGVRGALDPNTVKSFT 106

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
           + +L G+   H E  ++H DLKP+N+L+
Sbjct: 107 YQLLKGIAFCH-ENRVLHRDLKPQNLLI 133

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAA-----LDEIKILKQIAE 97
           RY     +G G +  V  A DT++   VA+K  K    +         L E+KIL+    
Sbjct: 6   RYKPIENIGSGAYGVVCSAIDTRSGKKVAIK--KIPHAFDVPTLAKRTLRELKILRHFKH 63

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEIC 155
            +      ++ + D  +  G + + V +V + +  +L  +I    +   PL    ++   
Sbjct: 64  DN------IIAIRDILRPPGADFKDVYVVMDLMESDLHHII----HSDQPLTEEHIRYFL 113

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
           + +L GL ++H   ++IH DLKP N+L+
Sbjct: 114 YQLLRGLKYIHSA-NVIHRDLKPSNLLV 140

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 19/146 (13%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
           +Y    K+G G + TV+ A + +T   VALK   +    +    +AL EI +LK++    
Sbjct: 1   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH-- 58

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADY-RGVP-LHMVKEICFH 157
               K +V+L D   HS    + + +VFEY  ++L    KY D   G     +VK   F 
Sbjct: 59  ----KNIVRLYDVL-HSD---KKLTLVFEYCDQDLK---KYFDSCNGDIDPEIVKSFMFQ 107

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           +L GL   H   +++H DLKP+N+L+
Sbjct: 108 LLKGLAFCHSH-NVLHRDLKPQNLLI 132

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 53/187 (28%)

Query: 302 DLKCKLVDFGNA-----CWTYKQF-TNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF 354
           DL  K+ DFG A      +++K + +  + T+ YR P +LL  + Y+   D+W+  CI  
Sbjct: 151 DLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFA 210

Query: 355 ELATGDVLFDPHSGDN-------------YDRDEDHLALMMELLGMMPRKIAFGGRYSRD 401
           E+ TG  LF   +G +               R+ED      ELL ++P  +   G   R 
Sbjct: 211 EMLTGKPLF---AGAHELEQMQLILESVPVVREEDRN----ELLNVIPSFVRNDGGEPRR 263

Query: 402 FFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCL 460
                            PL  +L           N  A DFL  IL F P  R TA + L
Sbjct: 264 -----------------PLRDLLPG--------VNPEALDFLEQILTFNPMDRLTAEEAL 298

Query: 461 THPWINV 467
            HP+++ 
Sbjct: 299 MHPYMSC 305

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 24/147 (16%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA---ALDEIKILKQIAEGDP 100
           Y+   KLG G ++TV+      T + VALK +   +H   A   A+ E+ +LK +   + 
Sbjct: 8   YIKLDKLGEGTYATVYKGRSKLTDNLVALK-EIRLEHEEGAPCTAIREVSLLKDLKHAN- 65

Query: 101 DDKKCVVKLLD--HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRG--VPLHMVKEICF 156
                +V L D  H + S      + +VFEYL ++L    +Y D  G  + +H VK   F
Sbjct: 66  -----IVTLHDIIHTEKS------LTLVFEYLDKDLK---QYLDDCGNSINMHNVKLFLF 111

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            +L GL++ HR   ++H DLKP+N+L+
Sbjct: 112 QLLRGLNYCHRR-KVLHRDLKPQNLLI 137

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDP 100
           + + +K+G G F  V+           A+K   + K  +   E A+DE ++L ++     
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKL----- 56

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHIL 159
            D   +++  + F     +   + +V EY    +L  L+K    R +P   V      IL
Sbjct: 57  -DSSYIIRYYESFL----DKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQIL 111

Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
           +GL HLH +  I+H D+K  N+ L
Sbjct: 112 LGLAHLHSK-KILHRDIKSLNLFL 134

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 21/144 (14%)

Query: 48  SKLGWGHFSTVWLA-WDTQTSHY---VA---LKVQKSAQHYTEAALDEIKILKQIAEGDP 100
            KLG G F  V+      +       VA   LK   S Q   E  L E +I++++     
Sbjct: 5   KKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEF-LREARIMRKL----- 58

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHIL 159
            D   VVKLL       P    + +V EY+ G +LL+ ++    + + L  +      I 
Sbjct: 59  -DHPNVVKLLGVCTEEEP----LYIVMEYMEGGDLLSYLRKNRPK-LSLSDLLSFALQIA 112

Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
            G+++L    + IH DL   N L+
Sbjct: 113 RGMEYLES-KNFIHRDLAARNCLV 135

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 30/153 (19%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQ------I 95
             + V   +G G F  VWL  D  T    A+KV + +            ++K+       
Sbjct: 1   DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSD-----------MIKRNQIAHVR 49

Query: 96  AEGD---PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLT-LIKYADYRGVPLHM 150
           AE D     D   +VKL   F+    + +H+ +V EY+ G +L+  LI+       P   
Sbjct: 50  AERDILADADSPWIVKLYYSFQ----DEEHLYLVMEYMPGGDLMNLLIRKDV---FPEET 102

Query: 151 VKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
            +     +++ LD +H+ L  IH D+KP+N+L+
Sbjct: 103 ARFYIAELVLALDSVHK-LGFIHRDIKPDNILI 134

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 48  SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE--AALDEIKILKQIAEGDPDDKKC 105
            +LG G+   V       T   +A+K  +   +       L E+ IL           KC
Sbjct: 7   GELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDIL----------HKC 56

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
               +  F  +  N   + +  EY+    L  I       +P  ++ +I   +L GL +L
Sbjct: 57  NSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYL 116

Query: 166 HRELSIIHTDLKPENVLLMS 185
           H +  IIH D+KP N+L+ S
Sbjct: 117 HEKHKIIHRDVKPSNILVNS 136

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 26/144 (18%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA----ALDEIKILKQIAEGDPDDKK 104
           K+G G +  V+ A D  T   VALK +   +   E     A+ EI +LK++   +     
Sbjct: 6   KIGEGTYGVVYKARDKLTGEIVALK-KIRLETEDEGVPSTAIREISLLKELNHPN----- 59

Query: 105 CVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYAD---YRGVPLHMVKEICFHILVG 161
            +V+LLD   HS      + +VFE+L    L L KY D     G+   ++K   + +L G
Sbjct: 60  -IVRLLD-VVHSE---NKLYLVFEFLD---LDLKKYMDSSPLTGLDPPLIKSYLYQLLQG 111

Query: 162 LD--HLHRELSIIHTDLKPENVLL 183
           +   H HR   ++H DLKP+N+L+
Sbjct: 112 IAYCHSHR---VLHRDLKPQNLLI 132

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 18/148 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVAL-KVQKSAQHYTEA--ALDEIKILKQIAEGD 99
           +Y +  KLG G +  VW A D +T   VAL K+  + ++ T+A     EI  L+++    
Sbjct: 8   KYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELG--- 64

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGV--PLHMVKEICFH 157
             D   +VKLL+  K    N + + +VFEY+  +L  +I+      +   +H  + I + 
Sbjct: 65  --DHPNIVKLLNVIKAE--NDKDIYLVFEYMETDLHAVIR----ANILEDVH-KRYIMYQ 115

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +L  L ++H   ++IH DLKP N+LL S
Sbjct: 116 LLKALKYIHSG-NVIHRDLKPSNILLNS 142

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 15/142 (10%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
           Y    K+G G    V+ A D  T   VA+K  +  +   E  ++EI I+K          
Sbjct: 21  YKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKH------ 74

Query: 104 KCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEICFHILVG 161
             +V   D +         + +V EY+    LT I       V +    +  +C  +L G
Sbjct: 75  PNIVDYYDSYLVGD----ELWVVMEYMDGGSLTDI--ITQNFVRMNEPQIAYVCREVLQG 128

Query: 162 LDHLHRELSIIHTDLKPENVLL 183
           L++LH   ++IH D+K +N+LL
Sbjct: 129 LEYLHS-QNVIHRDIKSDNILL 149

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 54.3 bits (130), Expect = 6e-08
 Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 28/223 (12%)

Query: 282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSK 339
           I++D K PS      ++   D   K++DFG A    T    T  + TR YR PEV+LG  
Sbjct: 141 IHRDLK-PS-----NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG 194

Query: 340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRY 398
           Y    D+WS  CI  E+    +LF    G +Y    D    ++E LG   P  +      
Sbjct: 195 YKENVDIWSVGCIMGEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPT 248

Query: 399 SRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQ 458
            R++         +   + +P + +     + ++  A+   D L  +L   P KR +  +
Sbjct: 249 VRNYVENRPKYAGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDE 307

Query: 459 CLTHPWINVGPRLLEPS-MAATQPQDTGGSISDKNRREKDERE 500
            L HP+INV     +P+ + A  PQ     I DK   + DERE
Sbjct: 308 ALQHPYINV---WYDPAEVEAPPPQ-----IYDK---QLDERE 339

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 17/145 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGD 99
           +Y     +G G +  V      +T   VA+K     +  +   + A+ EI++LKQ+   +
Sbjct: 2   KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHEN 61

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLT-LIKYADYRGVPLHMVKEICFHI 158
                 +V L++ F+      + + +VFE++   +L  L KY +  G+    V++  F I
Sbjct: 62  ------LVNLIEVFRRK----KRLYLVFEFVDHTVLDDLEKYPN--GLDESRVRKYLFQI 109

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
           L G++  H   +IIH D+KPEN+L+
Sbjct: 110 LRGIEFCHSH-NIIHRDIKPENILV 133

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 53.5 bits (128), Expect = 9e-08
 Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 20/145 (13%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA---ALDEIKILKQIAEGDP 100
           Y+   KLG G ++TV+      T + VALK +   +H   A   A+ E+ +LK +   + 
Sbjct: 8   YIKLEKLGEGTYATVFKGRSKLTENLVALK-EIRLEHEEGAPCTAIREVSLLKDLKHAN- 65

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRG--VPLHMVKEICFHI 158
                +V L D   H+    + + +VFEYL ++L    +Y D  G  + +H VK   + I
Sbjct: 66  -----IVTLHD-IVHT---DKSLTLVFEYLDKDLK---QYMDDCGNIMSMHNVKIFLYQI 113

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
           L GL + HR   ++H DLKP+N+L+
Sbjct: 114 LRGLAYCHRR-KVLHRDLKPQNLLI 137

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 11/67 (16%)

Query: 305 CKLVDFGNACWTYKQFTNDIQ-------TRQYRCPEVLLGSKYSTPADLWSFACICFELA 357
            KL DFG A    K+ +++         T +Y  PEVLLG  Y    D WS   + +E+ 
Sbjct: 132 IKLTDFGLA----KELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEML 187

Query: 358 TGDVLFD 364
           TG   F 
Sbjct: 188 TGKPPFY 194

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 64/222 (28%), Positives = 94/222 (42%), Gaps = 26/222 (11%)

Query: 282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSK 339
           I++D K PS      ++   D   K++DFG A    T    T  + TR YR PEV+LG  
Sbjct: 148 IHRDLK-PS-----NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG 201

Query: 340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRY 398
           Y    D+WS  CI  E+  G VLF    G ++    D    ++E LG   P  +      
Sbjct: 202 YKENVDIWSVGCIMGEMIKGGVLF---PGTDHI---DQWNKVIEQLGTPCPEFMKKLQPT 255

Query: 399 SRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQ 458
            R +             + +P + +     + ++  A+   D L  +L     KR +  +
Sbjct: 256 VRTYVENRPKYAGYSFEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDE 314

Query: 459 CLTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDERE 500
            L HP+INV     +PS A   P      I DK   + DERE
Sbjct: 315 ALQHPYINV---WYDPSEAEAPPP----KIPDK---QLDERE 346

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 15/149 (10%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEG 98
            +Y   +K+G G F  V+ A   +T   VALK   ++   + +   AL EIKIL+ +   
Sbjct: 12  SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHE 71

Query: 99  DPDDKKCVVKLLD--HFKHSGPNGQH--VCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           +      VV L++    K +  N       +VFE+   +L  L+   + +   L  +K++
Sbjct: 72  N------VVNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVK-FTLSEIKKV 124

Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
              +L GL ++HR   I+H D+K  N+L+
Sbjct: 125 MKMLLNGLYYIHRN-KILHRDMKAANILI 152

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 24/147 (16%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA---ALDEIKILKQIAEGDP 100
           Y    KLG G ++TV+      T   VALK     +H   A   A+ E  +LK +   + 
Sbjct: 7   YKKLDKLGEGSYATVYKGRSKLTGQLVALKE-IRLEHEEGAPFTAIREASLLKDLKHAN- 64

Query: 101 DDKKCVVKLLD--HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHM--VKEICF 156
                +V L D  H K +      + +VFEYL  +L     Y D  G  L M  V+   F
Sbjct: 65  -----IVTLHDIIHTKKT------LTLVFEYLDTDLKQ---YMDDCGGGLSMHNVRLFLF 110

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            +L GL + H+   ++H DLKP+N+L+
Sbjct: 111 QLLRGLAYCHQR-RVLHRDLKPQNLLI 136

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 43/170 (25%), Positives = 60/170 (35%), Gaps = 58/170 (34%)

Query: 306 KLVDFGNA---------CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
           K+ DFG +         C T+      + T  Y  PE + G  YS  AD+WS      E 
Sbjct: 140 KIADFGISKVLENTLDQCNTF------VGTVTYMSPERIQGESYSYAADIWSLGLTLLEC 193

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
           A G   F P    ++           EL+    + I  G   S                 
Sbjct: 194 ALGKFPFLPPGQPSF----------FELM----QAICDGPPPS----------------- 222

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             P  +       FS     +  DF+   L   P+KRP+AA+ L HP+I 
Sbjct: 223 -LPAEE-------FSP----EFRDFISACLQKDPKKRPSAAELLQHPFIK 260

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 51.7 bits (125), Expect = 3e-07
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 19/142 (13%)

Query: 49  KLGWGHFSTVWLA-WDTQTSHY---VALKVQK--SAQHYTEAALDEIKILKQIAEGDPDD 102
           KLG G F  V+              VA+K  K  +++   E  L+E  I+K++       
Sbjct: 6   KLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKL------S 59

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVG 161
              +V+LL       P    + +V EY+ G +LL  ++      + L  + ++   I  G
Sbjct: 60  HPNIVRLLGVCTQGEP----LYIVTEYMPGGDLLDFLRKHG-EKLTLKDLLQMALQIAKG 114

Query: 162 LDHLHRELSIIHTDLKPENVLL 183
           +++L    + +H DL   N L+
Sbjct: 115 MEYLE-SKNFVHRDLAARNCLV 135

Length = 258

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKL 109
           +G G +  V+ A   +T   VA+K+    +   E   +E  IL+        +   +   
Sbjct: 14  IGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILR-----KYSNHPNIATF 68

Query: 110 LDHFKHSGPNGQH--VCMVFEYLGENLLT-LIKYADYRGVPL--HMVKEICFHILVGLDH 164
              F    P G    + +V E  G   +T L+K    +G  L    +  I    L GL +
Sbjct: 69  YGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAY 128

Query: 165 LHRELSIIHTDLKPENVLL 183
           LH    +IH D+K +N+LL
Sbjct: 129 LHENK-VIHRDIKGQNILL 146

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 20/150 (13%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAE 97
           G + ++ K+G G FS V+ A        VALK  +          +  L EI +LKQ+  
Sbjct: 2   GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQL-- 59

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGE--NLLTLIKYA--DYRGVPLHMVKE 153
               D   V+K L  F  +      + +V E L +  +L  +IK+     R +P   + +
Sbjct: 60  ----DHPNVIKYLASFIEN----NELNIVLE-LADAGDLSRMIKHFKKQKRLIPERTIWK 110

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLL 183
               +   L+H+H    I+H D+KP NV +
Sbjct: 111 YFVQLCSALEHMH-SKRIMHRDIKPANVFI 139

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 17/139 (12%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G F  V+ A +  T   +A+K    Q +     +   DE+K+L+ +          
Sbjct: 7   KIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELL------KHPN 60

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDH 164
           +VK      H     + V +  EY     L  L+++   R +  H+++     +L GL +
Sbjct: 61  LVKYYGVEVHR----EKVYIFMEYCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAY 114

Query: 165 LHRELSIIHTDLKPENVLL 183
           LH    I+H D+KP N+ L
Sbjct: 115 LH-SHGIVHRDIKPANIFL 132

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 40/171 (23%), Positives = 57/171 (33%), Gaps = 56/171 (32%)

Query: 306 KLVDFG------NACWTYKQFTNDIQ-TRQYRCPEVLLGSKYS---TPADLWSFACICFE 355
           KL DFG      N   T  +    +  T  Y  PEV+ G K       AD+WS  C+  E
Sbjct: 139 KLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLE 198

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL 415
           +ATG     P S       ++   +M  +       I                       
Sbjct: 199 MATGKR---PWS-----ELDNEFQIMFHVGAGHKPPIP---------------------- 228

Query: 416 RFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
                               +    DFL   L+  P+KRPTA++ L HP++
Sbjct: 229 ---------------DSLQLSPEGKDFLDRCLESDPKKRPTASELLQHPFV 264

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 34/157 (21%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
           RY++Q +LG G F TV+L  D +                   A + +K+LK+I  G+ + 
Sbjct: 1   RYILQQRLGKGSFGTVYLVKDKKAV-----------------AEERLKVLKEIPVGELNP 43

Query: 103 KKCV--------VKLLDH-----FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRG--V 146
            + V        +  LDH     F  S       C++ EY  G +L   ++   + G  +
Sbjct: 44  NETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTL 103

Query: 147 PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             + V E    +L+G+ ++H +  I+H DLK +N+ L
Sbjct: 104 SENQVCEWFIQLLLGVHYMH-QRRILHRDLKAKNIFL 139

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 50.4 bits (120), Expect = 9e-07
 Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 15/146 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGD 99
           ++ V   +G G +  V      +T   VA+K  K ++      E  L E+K+L+ + + +
Sbjct: 2   KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQEN 61

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
                 +V+L + F+  G     + +VFEY+ +N+L L++     GVP   V+   + ++
Sbjct: 62  ------IVELKEAFRRRG----KLYLVFEYVEKNMLELLEEMP-NGVPPEKVRSYIYQLI 110

Query: 160 VGLDHLHRELSIIHTDLKPENVLLMS 185
             +   H+   I+H D+KPEN+L+  
Sbjct: 111 KAIHWCHKN-DIVHRDIKPENLLISH 135

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGDV 361
           KL DFG A         +T+ + TR YR PE+L+G ++Y  P D+W+  C+  EL TG  
Sbjct: 140 KLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQP 199

Query: 362 LFDPHSGDNYDRDEDHLALMMELLG-MMPRKI 392
           L+   S      D D L L+ + LG ++PR  
Sbjct: 200 LWPGKS------DVDQLYLIRKTLGDLIPRHQ 225

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 18/146 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
           +Y    K+G G +  V+ A D  T+  +ALK   +++  +     A+ EI +LK++  G+
Sbjct: 3   QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGN 62

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
                 +V+L D   HS    + + +VFEYL  +L   +  +        ++K   + IL
Sbjct: 63  ------IVRLQD-VVHSE---KRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQIL 112

Query: 160 VGLD--HLHRELSIIHTDLKPENVLL 183
            G+   H HR   ++H DLKP+N+L+
Sbjct: 113 RGIAYCHSHR---VLHRDLKPQNLLI 135

Length = 294

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 32/148 (21%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALK-------VQKSAQHYTEAALDEIKILKQIAEGDPDD 102
           LG G F  V L      +   ALK       V+   Q +      E +IL++       +
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHI---FSEKEILEEC------N 51

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEY-LGENLLTLI----KYADYRGVPLHMVKEICFH 157
              +VKL   FK      +++ M+ EY LG  L T++     + +Y        +     
Sbjct: 52  HPFIVKLYRTFKDK----KYIYMLMEYCLGGELWTILRDRGLFDEYTA------RFYIAC 101

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +++  ++LH    II+ DLKPEN+LL S
Sbjct: 102 VVLAFEYLHN-RGIIYRDLKPENLLLDS 128

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 20/184 (10%)

Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFA 350
           + LL +   + KL DFG A         ++N++ T  YR P+VLLGS +YST  D+W   
Sbjct: 132 QNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVG 191

Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+  G   F P   D     +D L  +  +LG  P +  + G +S         L 
Sbjct: 192 CIFVEMIQGVAAF-PGMKD----IQDQLERIFLVLG-TPNEDTWPGVHS---------LP 236

Query: 411 HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI-NVGP 469
           H +  RF   +   + +        N   D    +L   P+ R +A   L+H +  ++ P
Sbjct: 237 HFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDLPP 296

Query: 470 RLLE 473
           RL E
Sbjct: 297 RLWE 300

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 58/167 (34%)

Query: 306 KLVDFGNACWTYKQFTNDIQ-------TRQYRCPEVLLGSKYSTPADLWSFACICFELAT 358
           KL DFG +    K  ++ +        T  Y  PE+     Y+  +D+WS  C+ +EL T
Sbjct: 143 KLGDFGIS----KVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCT 198

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
               F+   G+N       L L +++L      I    +YS +          +R L   
Sbjct: 199 LKHPFE---GENL------LELALKILKGQYPPIP--SQYSSE----------LRNLVSS 237

Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
            L K                           PE+RP+ AQ L  P+I
Sbjct: 238 LLQK--------------------------DPEERPSIAQILQSPFI 258

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 23/143 (16%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           ++G G +  V+ A DT +   VALK   +         ++L EI +L  +   +      
Sbjct: 14  RIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPN------ 67

Query: 106 VVKLLDHFKHSGPNGQH---VCMVFEYLGENLLTLIKYADYRGVPLH--MVKEICFHILV 160
           +V+L +        G+H   + +V EY  ++L +L+   D    P     VK +   +L 
Sbjct: 68  IVELKEVVV-----GKHLDSIFLVMEYCEQDLASLL---DNMPTPFSESQVKCLMLQLLR 119

Query: 161 GLDHLHRELSIIHTDLKPENVLL 183
           GL +LH    IIH DLK  N+LL
Sbjct: 120 GLQYLHENF-IIHRDLKVSNLLL 141

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVAL-KVQKSAQHYTEAA--LDEIKILKQIAEGD 99
           RY +Q  +G G +  V  A DT T   VA+ K+    +H ++A   L EIK+L+ +   D
Sbjct: 1   RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPD 60

Query: 100 PDDKKCVVKLLDHFKHSGPNG-QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
                 +V++            + + +VFE +  +L  +IK  D      H      + +
Sbjct: 61  ------IVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQF--FLYQL 112

Query: 159 LVGLDHLHRELSIIHTDLKPENVL 182
           L  L ++H   ++ H DLKP+N+L
Sbjct: 113 LRALKYIHTA-NVFHRDLKPKNIL 135

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDV 361
           KL DFG A       + ++ ++ T  YR P+VL G+K YST  D+WS  CI  ELA    
Sbjct: 139 KLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGR 198

Query: 362 LFDPHSGDNYDRDEDHLALMMELLG 386
              P      D D D L  +  LLG
Sbjct: 199 PLFP----GNDVD-DQLKRIFRLLG 218

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 42/168 (25%), Positives = 59/168 (35%), Gaps = 59/168 (35%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLLGSKYSTPADLWSFACICFELAT 358
           KL DFG +     Q T+ +  R        +  PEV+  S Y   AD+WS      ELA 
Sbjct: 138 KLADFGVS----GQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAK 193

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
           G+    P S                                        DL  +R L   
Sbjct: 194 GE---PPLS----------------------------------------DLHPMRVLFLI 210

Query: 419 PLNKV-LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           P N    +E   FS+       DF+   L+  P++RP+A + L H +I
Sbjct: 211 PKNNPPSLEGNKFSK----PFKDFVSLCLNKDPKERPSAKELLKHKFI 254

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 35  MGDTFK-NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD-----E 88
            G  F+   RYV    +G G F  V  A D  T   VA+K  K  + ++   L      E
Sbjct: 2   FGTVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIK--KIMKPFSTPVLAKRTYRE 59

Query: 89  IKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL 148
           +K+LK +   +      ++ L D F    P  + +  V E LG +L  L+     R +  
Sbjct: 60  LKLLKHLRHEN------IISLSDIF--ISPL-EDIYFVTELLGTDLHRLLT---SRPLEK 107

Query: 149 HMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             ++   + IL GL ++H    ++H DLKP N+L+
Sbjct: 108 QFIQYFLYQILRGLKYVH-SAGVVHRDLKPSNILI 141

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 17/75 (22%)

Query: 306 KLVDFGNA--------CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA 357
           KLVDFG A         WT+        T +Y  PE++L   Y    D WS   + +EL 
Sbjct: 133 KLVDFGFAKKLKSGQKTWTF------CGTPEYVAPEIILNKGYDFSVDYWSLGILLYELL 186

Query: 358 TGDVLFDPHSGDNYD 372
           TG     P   D+ D
Sbjct: 187 TGRP---PFGEDDED 198

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 25/150 (16%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIK-ILKQIAEGDPD 101
            + +   +G G F  V+ A D +T+  VA+KV        E A DEI+ I ++I      
Sbjct: 2   LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVID-----LEEAEDEIEDIQQEIQ----- 51

Query: 102 DKKCVVKLLD-----HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEIC 155
                +          +  S   G  + ++ EY  G + L L+K      +    +  I 
Sbjct: 52  ----FLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKP---GKLDETYIAFIL 104

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             +L+GL++LH E   IH D+K  N+LL  
Sbjct: 105 REVLLGLEYLHEE-GKIHRDIKAANILLSE 133

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           KL DFG +        + + +  Y  PEVL G  Y    D WS  C+ +E   G   F P
Sbjct: 141 KLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCG---FPP 197

Query: 366 HSGDNYD 372
            SG   +
Sbjct: 198 FSGSTPN 204

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 38/155 (24%)

Query: 49  KLGWGHFSTVWLA-WDT--QTSHYVALKVQK---SAQHYTEAALDEIKILKQIAEGDPDD 102
           KLG G F  V+          +  VA+K  K   S +   +  L E +++K++       
Sbjct: 2   KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEER-KDFLKEARVMKKL------G 54

Query: 103 KKCVVKLLDHFKHSG--PNGQHVCMVFEYL-GENLLT-LIKYADYRGVP----------L 148
              VV+LL      G     + + +V EY+ G +LL  L K       P          L
Sbjct: 55  HPNVVRLL------GVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLL 108

Query: 149 HMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
               +I      G+++L      +H DL   N L+
Sbjct: 109 SFAIQIA----KGMEYLA-SKKFVHRDLAARNCLV 138

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 24/147 (16%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGDPD 101
           Y+   KLG G ++TV+          VALKV   K+ +     A+ E  +LK +      
Sbjct: 7   YLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGL------ 60

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYR-----GVPLHMVKEICF 156
            K   + LL    H+    + +  VFEY+  +L      A Y      G+  + V+   F
Sbjct: 61  -KHANIVLLHDIIHTK---ETLTFVFEYMHTDL------AQYMIQHPGGLHPYNVRLFMF 110

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            +L GL ++H +  I+H DLKP+N+L+
Sbjct: 111 QLLRGLAYIHGQ-HILHRDLKPQNLLI 136

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 41/166 (24%), Positives = 60/166 (36%), Gaps = 50/166 (30%)

Query: 306 KLVDFGNACWTYKQFTNDIQ-----TRQYRCPEVLLGSKYSTPADLWSFACICFELATGD 360
           KL DFG +     Q  N +      T  Y  PE + G+ YS  +D+WS      ELATG 
Sbjct: 141 KLCDFGVS----GQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGR 196

Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL 420
             + P   D  D       L+  ++   P ++   G++S DF                  
Sbjct: 197 FPYPPE-NDPPDGI---FELLQYIVNEPPPRLP-SGKFSPDF------------------ 233

Query: 421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
                              DF+   L   P +RP+  + L HP+I 
Sbjct: 234 ------------------QDFVNLCLIKDPRERPSYKELLEHPFIK 261

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 21/153 (13%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKILKQIAEGDP 100
            RY+    LG G    V+ A D+     VA+K +  +     + AL EIKI++++     
Sbjct: 5   SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRL----- 59

Query: 101 DDKKCVVKLLDHFKHSGPNGQH----------VCMVFEYLGENLLTLIKYADYRGVPLHM 150
            D   +VK+ +    SG +             V +V EY+  +L  +++      +    
Sbjct: 60  -DHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQGP---LSEEH 115

Query: 151 VKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
            +   + +L GL ++H   +++H DLKP NV +
Sbjct: 116 ARLFMYQLLRGLKYIH-SANVLHRDLKPANVFI 147

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 305 CKLVDFGNAC-WTYKQFTNDIQ-TRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
             + DF  A   T    T     T  Y  PEVL    YS   D WS     +E   G   
Sbjct: 139 VHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRP 198

Query: 363 FDPHS 367
           +  HS
Sbjct: 199 YRGHS 203

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 12/137 (8%)

Query: 48  SKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPDDKKCV 106
            +LG G F  V+ A   +T  + A K+ Q  ++   E  + EI IL +           +
Sbjct: 11  GELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSEC------KHPNI 64

Query: 107 VKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH 166
           V L + + +       + ++ E+     L  I     RG+    ++ +C  +L  L+ LH
Sbjct: 65  VGLYEAYFYEN----KLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLH 120

Query: 167 RELSIIHTDLKPENVLL 183
               +IH DLK  N+LL
Sbjct: 121 SHK-VIHRDLKAGNILL 136

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 33/170 (19%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEA--ALDEIKILKQIAEGDPDDKK 104
            LG G    V+L     T    ALKV  +K      +    L E +IL  +      D  
Sbjct: 8   LLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATL------DHP 61

Query: 105 CVVKLLDHFKHSGPNGQHVCMVFEY-LGENLLTLIKYADYRGVPLHMVKE--ICFH---I 158
            +  L   F+       ++C+V +Y  G  L  L++       P   + E    F+   +
Sbjct: 62  FLPTLYASFQTE----TYLCLVMDYCPGGELFRLLQRQ-----PGKCLSEEVARFYAAEV 112

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL-------MSMIDPSKDPRKSGPPPM 201
           L+ L++LH  L I++ DLKPEN+LL       +S  D SK      PP  
Sbjct: 113 LLALEYLHL-LGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVS 161

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 47.5 bits (113), Expect = 8e-06
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPE 179
           +H+CMV EY+ G +  TL+K      +P+ M +      ++ L++LH    I+H DLKP+
Sbjct: 74  RHLCMVMEYVEGGDCATLLKNIG--ALPVDMARMYFAETVLALEYLH-NYGIVHRDLKPD 130

Query: 180 NVLLMSM 186
           N+L+ SM
Sbjct: 131 NLLITSM 137

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 34/97 (35%)

Query: 302 DLKC-----------KLVDFGNAC-----------------------WTYKQFTNDIQTR 327
           DLK            K+ DFG A                           ++F + + T 
Sbjct: 127 DLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTA 186

Query: 328 QYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFD 364
           +Y  PE+L        +DLW+  CI +++ TG   F 
Sbjct: 187 EYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFR 223

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 38/137 (27%), Positives = 73/137 (53%), Gaps = 16/137 (11%)

Query: 49  KLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVV 107
           KLG G F  VW+  W+  T   VA+K  K      E+ L+E +I+K++      DK  +V
Sbjct: 13  KLGNGQFGEVWMGTWNGNTK--VAVKTLKPGTMSPESFLEEAQIMKKLRH----DK--LV 64

Query: 108 KLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH 166
           +L     ++  + + + +V EY+ + +LL  +K  + R + L  + ++   +  G+ ++ 
Sbjct: 65  QL-----YAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE 119

Query: 167 RELSIIHTDLKPENVLL 183
           R ++ IH DL+  N+L+
Sbjct: 120 R-MNYIHRDLRSANILV 135

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 25/149 (16%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAE 97
           RY   S +G G +  V  A+DT+T   VA+K  K ++      + +    E+++LK +  
Sbjct: 16  RYQNLSPVGSGAYGQVCSAFDTKTGRKVAIK--KLSRPFQSAIHAKRTYRELRLLKHM-- 71

Query: 98  GDPDDKKCVVKLLDHFKHSGP--NGQHVCMVFEYLGENLLTLIK---YADYRGVPLHMVK 152
               D + V+ LLD F  +    + Q V +V   +G +L  ++K    +D        ++
Sbjct: 72  ----DHENVIGLLDVFTPASSLEDFQDVYLVTHLMGADLNNIVKCQKLSDDH------IQ 121

Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENV 181
            + + IL GL ++H    IIH DLKP N+
Sbjct: 122 FLVYQILRGLKYIH-SAGIIHRDLKPSNI 149

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 31/143 (21%)

Query: 53  GHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIA-EGDPDDKKCVVK 108
           G +  V+ A D +T   VALK   ++K  + +   +L EI IL ++        K+ VV 
Sbjct: 16  GTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVV- 74

Query: 109 LLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHM--------VKEICFHILV 160
                   G N   + MV EY+  +L +L++          M        VK +   +L 
Sbjct: 75  --------GSNLDKIYMVMEYVEHDLKSLME---------TMKQPFLQSEVKCLMLQLLS 117

Query: 161 GLDHLHRELSIIHTDLKPENVLL 183
           G+ HLH +  I+H DLK  N+LL
Sbjct: 118 GVAHLH-DNWILHRDLKTSNLLL 139

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 30/169 (17%)

Query: 30  YHAVRMGD-TFK-NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEA-- 84
           +++V +GD TF    RY     +G G    V  A+DT T   VA+K + +  Q+ T A  
Sbjct: 2   FYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKR 61

Query: 85  ALDEIKILKQIAEGDPDDKKCVVKLLDHF--KHSGPNGQHVCMVFEYLGENLLTLIKYAD 142
           A  E+ ++K +      + K ++ LL+ F  + S    Q V +V E +  NL  +I    
Sbjct: 62  AYRELVLMKLV------NHKNIIGLLNVFTPQKSLEEFQDVYLVMELMDANLCQVI---- 111

Query: 143 YRGVPLHM------VKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
                  M      +  + + +L G+ HLH    IIH DLKP N+++ S
Sbjct: 112 ------QMDLDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVKS 153

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 10/65 (15%)

Query: 306 KLVDFGNA------CWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELAT 358
           KL DFG A        TY   ++++ T  YR P+VLLG+  YS+  D+W   CI  E+  
Sbjct: 143 KLADFGLARAKSIPSQTY---SSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQ 199

Query: 359 GDVLF 363
           G   F
Sbjct: 200 GQPAF 204

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 332 PEVLLGSKYSTPADLWSFACICFE-LATGDVLFD--PHSGDNYDRD-EDHLALMMELLGM 387
           PEVL   KY++ AD+WS   + FE LA    +F+  P + + Y +    HL  ++  L +
Sbjct: 225 PEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKV 284

Query: 388 MPRKIAF--GGRYSRDFFNRHGDLR--HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLV 443
            P +     G R  R F       R  + R   F        ++ +           FLV
Sbjct: 285 HPEEFPRDPGSRLVRGFIEYASLERQPYTRYPCF--------QRVNLPIDGE-----FLV 331

Query: 444 -PILDFVPEKRPTAAQCLTHP 463
             +L F    RP+A + L +P
Sbjct: 332 HKMLTFDAAMRPSAEEILNYP 352

Length = 357

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 41/173 (23%), Positives = 56/173 (32%), Gaps = 70/173 (40%)

Query: 306 KLVDFGNACWTYKQFTNDIQ-------TRQYRCPEVLLGSKYSTPADLWSFACICFELAT 358
           KL DFG A    K   +D         T  Y  PE L    Y   +D+WS  C+ +EL  
Sbjct: 150 KLGDFGLA----KILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCA 205

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFG------GRYSRDFFNRHGDLRHI 412
              L  P +  N            +L      KI  G       RYS +           
Sbjct: 206 ---LSPPFTARNQL----------QLA----SKIKEGKFRRIPYRYSSE----------- 237

Query: 413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                  LN+V+                    +L+  P+KRP+  + L  P I
Sbjct: 238 -------LNEVIKS------------------MLNVDPDKRPSTEELLQLPLI 265

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 38/169 (22%), Positives = 56/169 (33%), Gaps = 56/169 (33%)

Query: 305 CKLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLLGSKYSTPADLWSFACICFELA 357
            KL DFG A     Q T +   R        +  PEV+    Y    D+WS   +C E+A
Sbjct: 155 VKLADFGFAA----QLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMA 210

Query: 358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF 417
            G+    P+  +            +  L      I   G               I  L+ 
Sbjct: 211 EGE---PPYLREP----------PLRAL----FLITTKG---------------IPPLK- 237

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
                       +S  +  D  +     L   PEKRP+A + L HP++ 
Sbjct: 238 --------NPEKWS-PEFKDFLNKC---LVKDPEKRPSAEELLQHPFLK 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 34/172 (19%)

Query: 306 KLVDFGNA-CWTYKQ------FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELA 357
           KL DFG A  ++  +      +TN + T  YR PE+LLG + Y  P D+W   CI  E+ 
Sbjct: 159 KLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMW 218

Query: 358 TGDVLFDPHSGDNYDRDEDH-LALMMELLGMMPRKIAFGGRYSRDFFNR----HGDLRHI 412
           T   +   ++       E H L L+ +L G +  ++ + G    + F +     G  R +
Sbjct: 219 TRSPIMQGNT-------EQHQLTLISQLCGSITPEV-WPGVDKLELFKKMELPQGQKRKV 270

Query: 413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
            + R  P  K         +  A D+ D L+ +LD  P KR  A   L H +
Sbjct: 271 -KERLKPYVK---------DPHALDLIDKLL-VLD--PAKRIDADTALNHDF 309

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 9/84 (10%)

Query: 306 KLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDVL 362
           KL DFG+A      ++  + I +R YR PE++LG+  Y+T  DLWS  CI  E+  G  +
Sbjct: 211 KLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPI 270

Query: 363 FDPHSGDNYDRDEDHLALMMELLG 386
           F   S        D L  ++++LG
Sbjct: 271 FSGQS------SVDQLVRIIQVLG 288

Length = 440

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 40  KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE--AALDEIKILKQIAE 97
           K   Y    KLG G ++TV+          VALKV +  +       A+ E  +LK +  
Sbjct: 3   KADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKH 62

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLH--MVKEIC 155
            +       + LL    H+    + + +VFEY+  +L    +Y D     LH   VK   
Sbjct: 63  AN-------IVLLHDIIHTK---ETLTLVFEYVHTDL---CQYMDKHPGGLHPENVKLFL 109

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
           F +L GL ++H+   I+H DLKP+N+L+
Sbjct: 110 FQLLRGLSYIHQRY-ILHRDLKPQNLLI 136

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAAL----DEIKILKQIAEGD 99
           + V+S +G GHF  V +  +  T    A+KV K +    +  +    +E  IL       
Sbjct: 3   FDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSI----- 57

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLI-KYADYRGVPL--HMVKEIC 155
             +   + +L   F+       ++ +V EY  G +LL+L+ +Y D         M +   
Sbjct: 58  -SNSPWIPQLQYAFQDK----DNLYLVMEYQPGGDLLSLLNRYED----QFDEDMAQFYL 108

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
             +++ +  +H ++  +H D+KPENVL+
Sbjct: 109 AELVLAIHSVH-QMGYVHRDIKPENVLI 135

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 12/142 (8%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK-SAQHYTEAALDEIKILKQIAEGDPD 101
            Y +  ++G G +  V+ A D  T   VA+KV K       E    EI +LK+       
Sbjct: 4   DYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKE------- 56

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVG 161
              C    +  +  S      + +V EY G   L  I       +    +  +C   L G
Sbjct: 57  ---CRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKG 113

Query: 162 LDHLHRELSIIHTDLKPENVLL 183
           L +LH E   IH D+K  N+LL
Sbjct: 114 LAYLH-ETGKIHRDIKGANILL 134

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 30  YHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDE 88
           Y  VR  D   N  + +  +LG G F  V+ A + +T    A KV +  ++   E  + E
Sbjct: 1   YEHVRR-DLDPNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVE 59

Query: 89  IKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL 148
           I+IL         +   +VKLL  F   G     + ++ E+     +  I     RG+  
Sbjct: 60  IEILATC------NHPYIVKLLGAFYWDG----KLWIMIEFCPGGAVDAIMLELDRGLTE 109

Query: 149 HMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             ++ IC  +L  L +LH  + IIH DLK  NVLL
Sbjct: 110 PQIQVICRQMLEALQYLH-SMKIIHRDLKAGNVLL 143

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 14/139 (10%)

Query: 46  VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           +  KLG G + +V+ A   +T   VA+KV    +   +  + EI ILKQ       D   
Sbjct: 7   ILEKLGEGSYGSVYKAIHKETGQVVAIKVV-PVEEDLQEIIKEISILKQC------DSPY 59

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGEN-LLTLIKYADYRGVPLHMVKEICFHILVGLDH 164
           +VK    +  S      + +V EY G   +  ++K  + + +    +  I +  L GL++
Sbjct: 60  IVK----YYGSYFKNTDLWIVMEYCGAGSVSDIMKITN-KTLTEEEIAAILYQTLKGLEY 114

Query: 165 LHRELSIIHTDLKPENVLL 183
           LH     IH D+K  N+LL
Sbjct: 115 LHS-NKKIHRDIKAGNILL 132

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 33/159 (20%)

Query: 43  RYVVQSK-LGWGHFSTVWLAWDTQTSHYVALK----------VQKSAQ-------HYTEA 84
           RY+ +   LG G +  V  A+DT T   VA+K          V K  Q       H+T  
Sbjct: 9   RYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFT-- 66

Query: 85  ALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYR 144
            L E+KI+ +I   +      ++ L+D +      G  + +V + +  +L  ++      
Sbjct: 67  TLRELKIMNEIKHEN------IMGLVDVYV----EGDFINLVMDIMASDLKKVVDRKIRL 116

Query: 145 GVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
                 VK I   IL GL+ LH+    +H DL P N+ +
Sbjct: 117 TES--QVKCILLQILNGLNVLHKW-YFMHRDLSPANIFI 152

Length = 335

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKL 109
           +G G +  V+     +T    A+KV        E    EI +LK+ +       + +   
Sbjct: 14  VGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSH-----HRNIATY 68

Query: 110 LDHFKHSGPNG--QHVCMVFEYLGENLLT-LIKYADYRGVPLHMVKEICFHILVGLDHLH 166
              F    P G    + +V E+ G   +T LIK      +    +  IC  IL GL HLH
Sbjct: 69  YGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH 128

Query: 167 RELSIIHTDLKPENVLL 183
           +   +IH D+K +NVLL
Sbjct: 129 QH-KVIHRDIKGQNVLL 144

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 18/142 (12%)

Query: 48  SKLGWGHFSTVWLAWDTQTSHYVALKVQKS----AQHYTEAALDEIKILKQIA-EGDPDD 102
           + LG GHF  V LA   +T    A+K  K     A+   E+ + E +I +    E  P  
Sbjct: 5   AVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHP-- 62

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVG 161
              +V L   F+       HVC V EY  G +L+  I + D    P  +    C  +++G
Sbjct: 63  --FLVNLFACFQTE----DHVCFVMEYAAGGDLMMHI-HTDVFSEPRAVFYAAC--VVLG 113

Query: 162 LDHLHRELSIIHTDLKPENVLL 183
           L +LH E  I++ DLK +N+LL
Sbjct: 114 LQYLH-ENKIVYRDLKLDNLLL 134

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 306 KLVDFG-----------NACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           KL DFG           N     K+    + T  Y  PEV+LG  +S   D WS  CI +
Sbjct: 133 KLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILY 192

Query: 355 ELATG 359
           E   G
Sbjct: 193 EFLVG 197

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKL 109
           +G G +  V+     +T    A+KV    +   E    EI +LK+ +       + +   
Sbjct: 24  VGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSH-----HRNIATY 78

Query: 110 LDHFKHSGPNGQ--HVCMVFEYLGENLLT-LIKYADYRGVPLHMVKEICFHILVGLDHLH 166
              F    P G    + +V E+ G   +T L+K      +    +  IC  IL GL HLH
Sbjct: 79  YGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLH 138

Query: 167 RELSIIHTDLKPENVLL 183
               +IH D+K +NVLL
Sbjct: 139 AH-KVIHRDIKGQNVLL 154

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 305 CKLVDFGNACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
            KL DFG +        N  + TR Y  PE L G+ Y+  +D+WS      E+A G
Sbjct: 139 IKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIG 194

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 15/144 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVAL-KVQKSAQHYTEA--ALDEIKILKQIAEGD 99
           RY   + +G G + +V  A+DT+    VA+ K+ +  Q    A     E+++LK +   +
Sbjct: 16  RYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHEN 75

Query: 100 PDDKKCVVKLLDHF--KHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFH 157
                 V+ LLD F    S  N   V +V   +G +L  ++K    + +    V+ + + 
Sbjct: 76  ------VIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIVK---CQKLSDEHVQFLIYQ 126

Query: 158 ILVGLDHLHRELSIIHTDLKPENV 181
           +L GL ++H    IIH DLKP NV
Sbjct: 127 LLRGLKYIH-SAGIIHRDLKPSNV 149

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 21/142 (14%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+   + +T   VA+K   ++   +     A+ EI +LK++   +      
Sbjct: 7   KIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPN------ 60

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHM----VKEICFHILVG 161
           +V L D           + ++FE+L    + L KY D      +M    VK   + IL G
Sbjct: 61  IVCLQDVLMQE----SRLYLIFEFLS---MDLKKYLDSLPKGQYMDAELVKSYLYQILQG 113

Query: 162 LDHLHRELSIIHTDLKPENVLL 183
           +   H    ++H DLKP+N+L+
Sbjct: 114 ILFCHSR-RVLHRDLKPQNLLI 134

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)

Query: 28  GGYHAVRMGD-TFKN-GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEA 84
             +++V++ D TF    RY     +G G    V  A+DT     VA+K + +  Q+ T A
Sbjct: 5   SQFYSVQVADSTFTVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHA 64

Query: 85  --ALDEIKILKQIAEGDPDDKKCVVKLLDHF--KHSGPNGQHVCMVFEYLGENLLTLIKY 140
             A  E+ +LK +      + K ++ LL+ F  + S    Q V +V E +  NL  +I  
Sbjct: 65  KRAYRELVLLKCV------NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVI-- 116

Query: 141 ADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             +  +    +  + + +L G+ HLH    IIH DLKP N+++ S
Sbjct: 117 --HMELDHERMSYLLYQMLCGIKHLH-SAGIIHRDLKPSNIVVKS 158

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP 178
           N  ++CM  E++    L  I Y     +P+ ++ +I   ++ GL +L+    I+H D+KP
Sbjct: 74  NENNICMCMEFMDCGSLDRI-YKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKP 132

Query: 179 ENVLLMS 185
            N+L+ S
Sbjct: 133 SNILVNS 139

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 37/165 (22%), Positives = 55/165 (33%), Gaps = 50/165 (30%)

Query: 306 KLVDFGNACWTYKQFTND-------IQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT 358
           ++ DFG A     + T         + T  +  PEVL G +Y    D+WS  C+  E+AT
Sbjct: 144 RIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMAT 203

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
               ++     N      HLAL+         KIA                         
Sbjct: 204 AKPPWNAEKHSN------HLALIF--------KIASA----------------------- 226

Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHP 463
                        E  +  + D  +  L+  PE RP + + L HP
Sbjct: 227 ------TTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKHP 265

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 19/139 (13%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGDPDDKKCV 106
           ++G G F  V+   D +T   VA+K+   + A+   E    EI +L Q          C 
Sbjct: 11  RIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQ----------CD 60

Query: 107 VKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLH-MVKEICFHILVGLDH 164
              +  +  S   G  + ++ EYL G + L L++   +    +  M+KE    IL GLD+
Sbjct: 61  SPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKE----ILKGLDY 116

Query: 165 LHRELSIIHTDLKPENVLL 183
           LH E   IH D+K  NVLL
Sbjct: 117 LHSEKK-IHRDIKAANVLL 134

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 16/152 (10%)

Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKI 91
           V +GD  K  +Y    K+G G   TV+ A D  T   VA+K +    Q   E  ++EI +
Sbjct: 12  VSIGDPKK--KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILV 69

Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
           +K++   +P+    +V  LD F      G  + +V EYL    LT +       +    +
Sbjct: 70  MKELK--NPN----IVNFLDSFL----VGDELFVVMEYLAGGSLTDV--VTETCMDEAQI 117

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +C   L  L+ LH    +IH D+K +NVLL
Sbjct: 118 AAVCRECLQALEFLHAN-QVIHRDIKSDNVLL 148

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 30/152 (19%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQ----KSAQHYTEAALDEIKILKQIAEG 98
            +    ++G G F  V+ A D +T+  VA+K      K +    +  + E++ L+Q+   
Sbjct: 16  LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHP 75

Query: 99  DP-DDKKCVVKLLDHFKHSGPNGQHVC-MVFEY-LGE--NLLTLIKYADYRGVPLHMVK- 152
           +  + K C ++            +H   +V EY LG   ++L + K       PL  V+ 
Sbjct: 76  NTIEYKGCYLR------------EHTAWLVMEYCLGSASDILEVHKK------PLQEVEI 117

Query: 153 -EICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             IC   L GL +LH     IH D+K  N+LL
Sbjct: 118 AAICHGALQGLAYLH-SHERIHRDIKAGNILL 148

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 40/164 (24%), Positives = 58/164 (35%), Gaps = 48/164 (29%)

Query: 305 CKLVDFGNAC---WTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDV 361
            KL DFG +     T  +    I T  +  PEV+    Y+  AD+WS      E+A G  
Sbjct: 138 AKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEG-- 195

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
              P+S          +  M  +  M+P                             P  
Sbjct: 196 -KPPYS---------DIHPMRAIF-MIPN---------------------------KPPP 217

Query: 422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
             L +   +S     +  DF+   L   PE+RP+A Q L HP+I
Sbjct: 218 T-LSDPEKWSP----EFNDFVKKCLVKDPEERPSAIQLLQHPFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 21/144 (14%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALK------VQKSAQHYT-EAALDEIKILKQIAEGDPDD 102
           LG G FS+ + A D +T   +A+K         S Q    EA   EI+++ ++      +
Sbjct: 8   LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARL------N 61

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVG 161
              ++++L           H  +  E++ G ++  L+    Y      ++      +L G
Sbjct: 62  HPHIIRMLGATCEDS----HFNLFVEWMAGGSVSHLLS--KYGAFKEAVIINYTEQLLRG 115

Query: 162 LDHLHRELSIIHTDLKPENVLLMS 185
           L +LH E  IIH D+K  N+L+ S
Sbjct: 116 LSYLH-ENQIIHRDVKGANLLIDS 138

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 16/152 (10%)

Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKI 91
           V +GD  K  +Y    K+G G   TV+ A D  T   VA+K +    Q   E  ++EI +
Sbjct: 12  VSVGDPKK--KYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILV 69

Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
           +++    +P+    +V  LD +      G  + +V EYL    LT +       +    +
Sbjct: 70  MRE--NKNPN----IVNYLDSYL----VGDELWVVMEYLAGGSLTDV--VTETCMDEGQI 117

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +C   L  LD LH    +IH D+K +N+LL
Sbjct: 118 AAVCRECLQALDFLHSN-QVIHRDIKSDNILL 148

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 16/140 (11%)

Query: 46  VQSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKK 104
           +  KLG G F  VW+  W+  T   VA+K  K      EA L E +I+K++      DK 
Sbjct: 10  LDVKLGQGCFGEVWMGTWNGTTK--VAIKTLKPGTMMPEAFLQEAQIMKKLRH----DK- 62

Query: 105 CVVKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLD 163
            +V L     ++  + + + +V E++G+ +LL  +K  D + + L  + ++   I  G+ 
Sbjct: 63  -LVPL-----YAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMA 116

Query: 164 HLHRELSIIHTDLKPENVLL 183
           ++ R ++ IH DL+  N+L+
Sbjct: 117 YIER-MNYIHRDLRAANILV 135

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 18/167 (10%)

Query: 26  RRGGYHAVRMGD-TFKN-GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYT 82
           R   +++V +GD TF    RY     +G G    V  A+D      VA+K + +  Q+ T
Sbjct: 6   RDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQT 65

Query: 83  EA--ALDEIKILKQIAEGDPDDKKCVVKLLDHF--KHSGPNGQHVCMVFEYLGENLLTLI 138
            A  A  E+ ++K +      + K ++ LL+ F  + S    Q V +V E +  NL  +I
Sbjct: 66  HAKRAYRELVLMKCV------NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVI 119

Query: 139 KYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +      +    +  + + +L G+ HLH    IIH DLKP N+++ S
Sbjct: 120 QME----LDHERMSYLLYQMLCGIKHLH-SAGIIHRDLKPSNIVVKS 161

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 24/152 (15%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK--------VQKSAQHYT--EAALDEIKIL 92
           +++  + +G G F +V+L  +  +   +A+K             +  +  +A   EI +L
Sbjct: 1   KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALL 60

Query: 93  KQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMV 151
           K++   +      +V+ L     S  +  H+ +  EY+ G ++  L+   +Y      +V
Sbjct: 61  KELQHEN------IVQYLG----SSLDADHLNIFLEYVPGGSVAALLN--NYGAFEETLV 108

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           +     IL GL++LH    IIH D+K  N+L+
Sbjct: 109 RNFVRQILKGLNYLHNR-GIIHRDIKGANILV 139

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYR------CPEVLLGSKYSTPADLWSFACICFEL 356
           KL+DFG A    W     T+    +          PEV+  S Y   +D+WS  C  FE+
Sbjct: 142 KLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEM 201

Query: 357 ATG 359
           ATG
Sbjct: 202 ATG 204

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 16/152 (10%)

Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKI 91
           V +GD  K  +Y    K+G G   TV+ A D  T   VA+K +    Q   E  ++EI +
Sbjct: 12  VSVGDPKK--KYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILV 69

Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
           +++    +      +V  LD +      G  + +V EYL    LT +       +    +
Sbjct: 70  MRENKHPN------IVNYLDSYL----VGDELWVVMEYLAGGSLTDV--VTETCMDEGQI 117

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +C   L  L+ LH    +IH D+K +N+LL
Sbjct: 118 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 148

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 21/140 (15%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGDPDDKKCV 106
           ++G G F  V+   D +T   VA+K+   + A+   E    EI +L Q          C 
Sbjct: 11  RIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQ----------CD 60

Query: 107 VKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLH--MVKEICFHILVGLD 163
              +  +  S   G  + ++ EYLG  + L L+K       PL    +  I   IL GLD
Sbjct: 61  SPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPG-----PLEETYIATILREILKGLD 115

Query: 164 HLHRELSIIHTDLKPENVLL 183
           +LH E   IH D+K  NVLL
Sbjct: 116 YLHSERK-IHRDIKAANVLL 134

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 40/161 (24%)

Query: 324 IQTRQYRCPEVLLGSKYSTPA-DLWSFACICFELATGDVLF----------DPHSGDNYD 372
           + T  YR PE+LLG+++ T A D+W+  CI  EL T + +F          +P   D  D
Sbjct: 176 VVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLD 235

Query: 373 R---------DEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
           R         D+D      E +  MP        + R  +     ++++ + +  P +KV
Sbjct: 236 RIFSVMGFPADKD-----WEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKV 290

Query: 424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
            +                L  +L   P KR T+ Q L  P+
Sbjct: 291 FL---------------LLQKLLTMDPTKRITSEQALQDPY 316

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 306 KLVDFGNACWTYKQFTN-DIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFD 364
           K+ D G +    K      I T  Y  PEV  G  YS  +D+WS  C+ +E+AT    F+
Sbjct: 143 KIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFE 202

Query: 365 PHS 367
             S
Sbjct: 203 ARS 205

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 18/163 (11%)

Query: 30  YHAVRMGD-TFKN-GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEA-- 84
           +++V +GD TF    RY     +G G    V  A+D      VA+K + +  Q+ T A  
Sbjct: 3   FYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKR 62

Query: 85  ALDEIKILKQIAEGDPDDKKCVVKLLDHF--KHSGPNGQHVCMVFEYLGENLLTLIKYAD 142
           A  E+ ++K +      + K ++ LL+ F  + S    Q V +V E +  NL  +I+   
Sbjct: 63  AYRELVLMKCV------NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQME- 115

Query: 143 YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
              +    +  + + +L G+ HLH    IIH DLKP N+++ S
Sbjct: 116 ---LDHERMSYLLYQMLCGIKHLH-SAGIIHRDLKPSNIVVKS 154

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 16/144 (11%)

Query: 46  VQSKLGWGHFSTVWLAWDTQTSHY-VALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKK 104
           ++ KLG G F  VW+A  T   H  VA+K  K      EA L E  ++K +      DK 
Sbjct: 10  LEKKLGAGQFGEVWMA--TYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQH----DK- 62

Query: 105 CVVKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLD 163
            +VKL     H+    + + ++ E++ + +LL  +K  +    PL  + +    I  G+ 
Sbjct: 63  -LVKL-----HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMA 116

Query: 164 HLHRELSIIHTDLKPENVLLMSMI 187
            + +  + IH DL+  N+L+ + +
Sbjct: 117 FIEQR-NYIHRDLRAANILVSASL 139

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 146 VPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           +P  ++ +I   I+  L++LH +LS+IH D+KP NVL+
Sbjct: 100 IPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLI 137

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 18/139 (12%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKC 105
           +G G F  V L  D  + HY ALKV    +       +   +E ++LK+++         
Sbjct: 9   VGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSH------PF 62

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDH 164
           +++L           + + M+ EY+ G  L + ++ +                I+  L++
Sbjct: 63  IIRLFWTEHDQ----RFLYMLMEYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEY 116

Query: 165 LHRELSIIHTDLKPENVLL 183
           LH    I++ DLKPEN+LL
Sbjct: 117 LH-SKEIVYRDLKPENILL 134

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 49/199 (24%), Positives = 73/199 (36%), Gaps = 43/199 (21%)

Query: 3   EDSNGDRSDV---SDYTSEDEGTEDYRRGGYH------------AVRMGDTFKNGRYVVQ 47
            D  GD  DV   +DY +++E                        VRM       +Y + 
Sbjct: 45  CDELGDSDDVTHATDYDADEESLSPQTDVCQEPCETTSSSDPASVVRM-------QYNIL 97

Query: 48  SKLGWGHFSTVWLA--WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           S L  G    V++      +    V +K     +        EI ILK I+       + 
Sbjct: 98  SSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGKTPGR----EIDILKTISH------RA 147

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRG-VPLHMVKEICFHILVGLDH 164
           ++ L+  ++        VCMV      +L T   Y D  G +PL     I   +L  L +
Sbjct: 148 IINLIHAYR----WKSTVCMVMPKYKCDLFT---YVDRSGPLPLEQAITIQRRLLEALAY 200

Query: 165 LHRELSIIHTDLKPENVLL 183
           LH    IIH D+K EN+ L
Sbjct: 201 LH-GRGIIHRDVKTENIFL 218

Length = 392

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 22/142 (15%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGD---PDDKKC 105
           ++G G +  V+LA    T   VALK  K +       L+E++ +    E D       + 
Sbjct: 8   QVGQGGYGQVFLAKKKDTGEIVALKRMKKS---LLFKLNEVRHVLT--ERDILTTTKSEW 62

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL--GE--NLLTLIKYADYRGVPLHMVKEICFHILVG 161
           +VKLL  F+    + +++ +  EY+  G+   LL  +          +M +         
Sbjct: 63  LVKLLYAFQ----DDEYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFE-----A 113

Query: 162 LDHLHRELSIIHTDLKPENVLL 183
           +D LH  L  IH DLKPEN L+
Sbjct: 114 VDALHE-LGYIHRDLKPENFLI 134

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 15/65 (23%)

Query: 305 CKLVDFG--------NACWTYKQFTNDIQTRQYRCPEVL-LGSK-YSTPADLWSFACICF 354
            K+ DFG        N C   + FT    T QY  PEV+  G + Y  PAD+WS  C   
Sbjct: 148 VKISDFGTSKRLAGINPC--TETFTG---TLQYMAPEVIDKGPRGYGAPADIWSLGCTIV 202

Query: 355 ELATG 359
           E+ATG
Sbjct: 203 EMATG 207

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 10/63 (15%)

Query: 302 DLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE 355
           D K  + DFG A    KQ       T+ + T  Y CPE++    Y   AD+W+F CI ++
Sbjct: 150 DDKVTITDFGLA----KQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQ 205

Query: 356 LAT 358
           + T
Sbjct: 206 MCT 208

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 304 KCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDV 361
            C+L D G A      K  T    T  Y  PE+L    YS P D ++  C  +E+  G  
Sbjct: 133 NCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRT 192

Query: 362 LFDPHSGDNYDRDE 375
            F  H  +   ++E
Sbjct: 193 PFKDHK-EKVAKEE 205

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 43/164 (26%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDP 100
           RY   S +G G +  V  A    T   VA+K     +H  + +  L EIKIL+       
Sbjct: 6   RYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILR------- 58

Query: 101 DDKKCVVKLLDHFKH-------------SGPNGQHVCMVFEYLGENLLTLIKYADYRGVP 147
                       FKH             S  +   V +V E +  +L  LIK        
Sbjct: 59  -----------RFKHENIIGILDIIRPPSFESFNDVYIVQELMETDLYKLIKTQHLSN-- 105

Query: 148 LHMVKEIC---FHILVGLDHLHRELSIIHTDLKPENVLLMSMID 188
                 I    + IL GL ++H   +++H DLKP N+LL +  D
Sbjct: 106 ----DHIQYFLYQILRGLKYIH-SANVLHRDLKPSNLLLNTNCD 144

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 44/171 (25%), Positives = 60/171 (35%), Gaps = 55/171 (32%)

Query: 306 KLVDFGNACWTYKQFTNDIQ-----TRQYRCPEVLLGSKYSTPADLWSFACICFELATGD 360
           KL DFG       +  N I      T  Y  PE + G KY+  +D+WS      ELA G 
Sbjct: 144 KLCDFG----VSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGK 199

Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMM-----PRKIAFGGRYSRDFFNRHGDLRHIRRL 415
             F   + D  D  +D    +++LL  +     PR                         
Sbjct: 200 FPFAFSNID--DDGQDDPMGILDLLQQIVQEPPPR------------------------- 232

Query: 416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQ-CLTHPWI 465
                    +   DF E    D+ DF+   L   P +RPT  Q C   P+I
Sbjct: 233 ---------LPSSDFPE----DLRDFVDACLLKDPTERPTPQQLCAMPPFI 270

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 7/119 (5%)

Query: 71  ALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD-----HFKHSGPNGQHVCM 125
           A++V+ + + Y    LD+ ++ K+  E     +K +++ ++     +  ++  +  H+C+
Sbjct: 11  AVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCL 70

Query: 126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           V   + G +L   I     RG+ +  V      I  G+ HLH  + I++ D+KPENVLL
Sbjct: 71  VMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLH-SMDIVYRDMKPENVLL 128

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 25/153 (16%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDP 100
           + +  ++G G +  V+ A D  T   VALK   +    + +   A+ EIKIL+Q+     
Sbjct: 9   FDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQL----- 63

Query: 101 DDKKCVVKL----------LDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHM 150
            + + +V L          LD  K  G       +VFEY+  +L+ L++         H 
Sbjct: 64  -NHRNIVNLKEIVTDKQDALDFKKDKG----AFYLVFEYMDHDLMGLLESGLVHFSEDH- 117

Query: 151 VKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           +K     +L GL++ H++ + +H D+K  N+LL
Sbjct: 118 IKSFMKQLLEGLNYCHKK-NFLHRDIKCSNILL 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 42/182 (23%), Positives = 58/182 (31%), Gaps = 68/182 (37%)

Query: 302 DLKC-----------KLVDFGNACWTYKQFTNDIQTRQYR------CPEVLLGS-KYSTP 343
           D+K            KL DFG A    KQ       + ++       PEV+     Y   
Sbjct: 127 DIKGANILVDTNGVVKLADFGMA----KQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLA 182

Query: 344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF 403
           AD+WS  C   E+ATG                               K  +         
Sbjct: 183 ADIWSLGCTVLEMATG-------------------------------KPPWSQ------L 205

Query: 404 NRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHP 463
                +  I R      +K L    D    +A D   F++  L   P  RPTAA+ L HP
Sbjct: 206 EGVAAVFKIGR------SKELPPIPDHLSDEAKD---FILKCLQRDPSLRPTAAELLEHP 256

Query: 464 WI 465
           ++
Sbjct: 257 FV 258

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 16/152 (10%)

Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKI 91
           V +GD  K  +Y    K+G G   TV+ A D  T   VA++ +    Q   E  ++EI +
Sbjct: 13  VSVGDPKK--KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILV 70

Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
           +++    +P+    +V  LD +      G  + +V EYL    LT +       +    +
Sbjct: 71  MRE--NKNPN----IVNYLDSYL----VGDELWVVMEYLAGGSLTDV--VTETCMDEGQI 118

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +C   L  L+ LH    +IH D+K +N+LL
Sbjct: 119 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 149

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 22/141 (15%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD----EIKILKQIAEGDPDDKK 104
           ++G G   TV+      T    ALKV     ++ +        EI+IL+ +      +  
Sbjct: 81  RIGSGAGGTVYKVIHRPTGRLYALKVIYG--NHEDTVRRQICREIEILRDV------NHP 132

Query: 105 CVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDH 164
            VVK  D F H+G     + ++ E++    L     AD        + ++   IL G+ +
Sbjct: 133 NVVKCHDMFDHNG----EIQVLLEFMDGGSLEGTHIADE-----QFLADVARQILSGIAY 183

Query: 165 LHRELSIIHTDLKPENVLLMS 185
           LHR   I+H D+KP N+L+ S
Sbjct: 184 LHRR-HIVHRDIKPSNLLINS 203

Length = 353

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 326 TRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELL 385
           T  Y  PE+L G KY+   D WSF  + +E+  G     P  GD  D DE   ++ ++  
Sbjct: 159 TPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQ---SPFHGD--DEDELFESIRVD-T 212

Query: 386 GMMPRKIAFGGR------YSRDFFNRHGDLRHIRRLRFWP-LNKVLIEKYDFSE------ 432
              PR I    +      + RD   R G + +IR   F+  +N   +EK +         
Sbjct: 213 PHYPRWITKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTINWTALEKRELDPPFKPKV 272

Query: 433 KDANDMADF 441
           K  +D ++F
Sbjct: 273 KSPSDYSNF 281

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 19/140 (13%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKCV 106
           +G G F  V L         V +K   V++  +    AA +E ++LK ++  +      +
Sbjct: 8   VGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN------I 61

Query: 107 VKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEIC---FHILVGLD 163
           ++  ++F       + + +V EY      TL +Y   R   L     I      IL+ L 
Sbjct: 62  IEYYENFLED----KALMIVMEYAPGG--TLAEYIQKRCNSLLDEDTILHFFVQILLALH 115

Query: 164 HLHRELSIIHTDLKPENVLL 183
           H+H +L I+H DLK +N+LL
Sbjct: 116 HVHTKL-ILHRDLKTQNILL 134

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 12/136 (8%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPDDKKCVV 107
           +LG G F  V+ A + +T    A KV    ++   E  + EI IL         D   +V
Sbjct: 12  ELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASC------DHPNIV 65

Query: 108 KLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR 167
           KLLD F +      ++ ++ E+     +  +     R +    ++ +C   L  L++LH 
Sbjct: 66  KLLDAFYYE----NNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLH- 120

Query: 168 ELSIIHTDLKPENVLL 183
           E  IIH DLK  N+L 
Sbjct: 121 ENKIIHRDLKAGNILF 136

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 15/144 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVAL-KVQKSAQHYTEA--ALDEIKILKQIAEGD 99
           RY   S +G G + +V  A+DT+T   VA+ K+ +  Q    A     E+++LK +   +
Sbjct: 18  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN 77

Query: 100 PDDKKCVVKLLDHFK--HSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFH 157
                 V+ LLD F    S      V +V   +G +L  ++K    + +    V+ + + 
Sbjct: 78  ------VIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 128

Query: 158 ILVGLDHLHRELSIIHTDLKPENV 181
           IL GL ++H    IIH DLKP N+
Sbjct: 129 ILRGLKYIH-SADIIHRDLKPSNL 151

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 20/146 (13%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQH--YTEAALDEIKILKQIAEGD 99
           RY    ++G G + +V  A D +T   VA+K + +  Q   + + A  E+ +LK +   +
Sbjct: 16  RYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHEN 75

Query: 100 PDDKKCVVKLLDHF--KHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEIC 155
                 V+ LLD F    SG   Q   +V  Y+  +L  +       G PL    V+ + 
Sbjct: 76  ------VIGLLDVFTSAVSGDEFQDFYLVMPYMQTDLQKI------MGHPLSEDKVQYLV 123

Query: 156 FHILVGLDHLHRELSIIHTDLKPENV 181
           + +L GL ++H    IIH DLKP N+
Sbjct: 124 YQMLCGLKYIHSA-GIIHRDLKPGNL 148

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 21/146 (14%)

Query: 49  KLGWGHFSTVWLAW--DTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCV 106
           K+G G +  V+ A   D +     ALK Q      + +A  EI +L+++   +      V
Sbjct: 8   KVGRGTYGHVYKAKRKDGKDEKEYALK-QIEGTGISMSACREIALLRELKHPN------V 60

Query: 107 VKLLDHF-KHSGPNGQHVCMVFEYLGENLLTLIKY-----ADYR--GVPLHMVKEICFHI 158
           + L   F  HS    + V ++F+Y   +L  +IK+     A+ +   +P  MVK + + I
Sbjct: 61  IALQKVFLSHSD---RKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQI 117

Query: 159 LVGLDHLHRELSIIHTDLKPENVLLM 184
           L G+ +LH    ++H DLKP N+L+M
Sbjct: 118 LDGIHYLHANW-VLHRDLKPANILVM 142

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 44/148 (29%), Positives = 61/148 (41%), Gaps = 18/148 (12%)

Query: 43  RYV-VQSKLGWGHFSTVWL-AWDTQ---TSHYVALKVQKS--AQHYTEAALDEIKILKQI 95
           RY+     LG GHF  V L  +D     T   VA+K  K    Q  T     EI ILK +
Sbjct: 4   RYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTL 63

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEIC 155
                   + +VK        G  G+ + ++ EY+   L +L  Y     + L  +    
Sbjct: 64  ------YHENIVKYKGCCSEQG--GKGLQLIMEYV--PLGSLRDYLPKHKLNLAQLLLFA 113

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
             I  G+ +LH +   IH DL   NVLL
Sbjct: 114 QQICEGMAYLHSQ-HYIHRDLAARNVLL 140

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 305 CKLVDFGNAC--WTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
            ++ D G A      K+      T  Y  PEVL G  Y    D ++  C  +E+  G   
Sbjct: 134 VRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSP 193

Query: 363 FDPHSGDNYDRDEDHLALMME 383
           F          +     L M 
Sbjct: 194 FRQRKEKVEKEELKRRTLEMA 214

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 30/156 (19%)

Query: 324 IQTRQYRCPEVLLGSKYSTPA-DLWSFACICFELATGDVLF----------DPHSGDNYD 372
           + T  YR PE+LLG+++ T A D+W+  CI  EL T + +F          +P+  D  D
Sbjct: 176 VVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLD 235

Query: 373 RDEDHLALMM----ELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY 428
           R  + +        E +  MP        + R+ +     ++++ + +  P +K      
Sbjct: 236 RIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAF---- 291

Query: 429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                        L  +L   P KR T+ Q +  P+
Sbjct: 292 -----------HLLQKLLTMDPIKRITSEQAMQDPY 316

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 306 KLVDFGNAC-WTYKQFTNDIQTRQYRCPEVLL-GSKYSTPADLWSFACICFELATGDVLF 363
           ++ D G AC ++ K+    + T  Y  PEVL  G+ Y + AD +S  C+ F+L  G   F
Sbjct: 137 RISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPF 196

Query: 364 DPH-SGDNYDRDEDHLALMMEL 384
             H + D ++ D   L + +EL
Sbjct: 197 RQHKTKDKHEIDRMTLTVNVEL 218

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 30/147 (20%)

Query: 50  LGWGHFSTVWLAWDTQ---TSHYVALKVQKSA-----QHYTEAALDEIKILKQIAEGDPD 101
           LG G +  V+         T    A+KV K A     Q  T     E  IL+ +      
Sbjct: 4   LGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKH---- 59

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH-- 157
               +V L+  F+  G     + ++ EYL  GE    L  + +  G+   M    CF+  
Sbjct: 60  --PFIVDLIYAFQTGG----KLYLILEYLSGGE----LFMHLEREGI--FMEDTACFYLS 107

Query: 158 -ILVGLDHLHRELSIIHTDLKPENVLL 183
            I + L+HLH+   II+ DLKPEN+LL
Sbjct: 108 EISLALEHLHQ-QGIIYRDLKPENILL 133

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 326 TRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPH 366
           T  Y  PE+LLG KY+T  D WSF  + +E+  G   F  H
Sbjct: 159 TPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGH 199

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 20/146 (13%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKS---AQHYTEAALDEIKILKQIAEGD 99
           + +   +G G F  V +     T    A+K + K     +      L+E +IL+++    
Sbjct: 2   FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQEL---- 57

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEICFH 157
             +   +V L   F+    + +++ +V + L    L   +Y   + V      VK     
Sbjct: 58  --NHPFLVNLWYSFQ----DEENMYLVVDLLLGGDL---RYHLSQKVKFSEEQVKFWICE 108

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           I++ L++LH    IIH D+KP+N+LL
Sbjct: 109 IVLALEYLH-SKGIIHRDIKPDNILL 133

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENV 181
           +CM  E++ G +L  ++K A    +P +++ +I   +L GL +L  +  I+H D+KP N+
Sbjct: 76  ICM--EHMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNI 131

Query: 182 LLMS 185
           L+ S
Sbjct: 132 LVNS 135

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN 180
            +C+V   + G +L   I      G P          I+ GL+HLH+   I++ DLKPEN
Sbjct: 67  DLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR-RIVYRDLKPEN 125

Query: 181 VLL 183
           VLL
Sbjct: 126 VLL 128

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 8/71 (11%)

Query: 121 QHVCMVFEYLGENLLTLIKY-----ADYRGV--PLHMVKEICFHILVGLDHLHRELSIIH 173
           + V ++F+Y   +L  +IK+     A+ + V  P  MVK + + IL G+ +LH    ++H
Sbjct: 73  RKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW-VLH 131

Query: 174 TDLKPENVLLM 184
            DLKP N+L+M
Sbjct: 132 RDLKPANILVM 142

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVK 108
           KLG G F  VW+ +    S  VA+K  K      +A L+E  ++K +      DK  +V+
Sbjct: 13  KLGAGQFGEVWMGY-YNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQH----DK--LVR 65

Query: 109 LLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR 167
           L        P    + ++ EY+ + +LL  +K  +   V L  + +    I  G+ ++ R
Sbjct: 66  LYAVVTKEEP----IYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER 121

Query: 168 ELSIIHTDLKPENVLLMSMI 187
           + + IH DL+  NVL+   +
Sbjct: 122 K-NYIHRDLRAANVLVSESL 140

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 146 VPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           +P  ++ +I    +  L++L  EL IIH D+KP N+LL
Sbjct: 104 IPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILL 141

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 24/142 (16%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKL 109
           LG G F  V+L +D  T   +A+K         E    E+  L           +C ++L
Sbjct: 10  LGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETK-KEVNAL-----------ECEIQL 57

Query: 110 LDHFKHSG--------PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILV 160
           L + +H           + + + +  EY+ G ++   +K   Y  +   + ++    IL 
Sbjct: 58  LKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLK--AYGALTETVTRKYTRQILE 115

Query: 161 GLDHLHRELSIIHTDLKPENVL 182
           G+++LH  + I+H D+K  N+L
Sbjct: 116 GVEYLHSNM-IVHRDIKGANIL 136

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 306 KLVDFGNACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      ELA G
Sbjct: 144 KLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIG 198

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 16/148 (10%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVAL-KVQKSAQHYTEAALD---EIKILKQIAEGD 99
           + ++ K+G G FS V+ A        VAL KVQ       +A  D   EI +LKQ+   +
Sbjct: 4   FQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPN 63

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKY--ADYRGVPLHMVKEICFH 157
                 V+K LD F     N  ++ +     G+ L  +IKY     R +P   V +    
Sbjct: 64  ------VIKYLDSFIED--NELNIVLELADAGD-LSQMIKYFKKQKRLIPERTVWKYFVQ 114

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +   ++H+H    ++H D+KP NV + +
Sbjct: 115 LCSAVEHMHSR-RVMHRDIKPANVFITA 141

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 4/32 (12%)

Query: 155 CFH---ILVGLDHLHRELSIIHTDLKPENVLL 183
           CF+   I+ GL+HLH+   II+ DLKPENVLL
Sbjct: 100 CFYTAQIISGLEHLHQR-RIIYRDLKPENVLL 130

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 4/56 (7%)

Query: 129 YLGENLLTLI-KYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           Y+G +LLTL+ K+ D   +P  M +     +++ +D +H+ L  +H D+KP+NVLL
Sbjct: 83  YVGGDLLTLLSKFEDR--LPEDMARFYLAEMVLAIDSVHQ-LGYVHRDIKPDNVLL 135

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
           RY +  K+G G F  ++LA     S +  +K   + K      EA+  E+ +L ++   +
Sbjct: 1   RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPN 60

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICF-- 156
                 +V     F+ +G     + +V EY  G +L+  I     RGV     + + +  
Sbjct: 61  ------IVTFFASFQENG----RLFIVMEYCDGGDLMKRINRQ--RGVLFSEDQILSWFV 108

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            I +GL H+H +  I+H D+K +N+ L  
Sbjct: 109 QISLGLKHIH-DRKILHRDIKSQNIFLSK 136

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 26/143 (18%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKV--------QKSAQHYTEAALDEIKILKQIAEGDPD 101
           LG G F  V +A    T  Y A+K          K  QH       E  IL ++      
Sbjct: 26  LGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQH----VAQEKSILMEL------ 75

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEY-LGENLLTLIKYADYRGVPLHMVKEICFHILV 160
               +V ++  F+    +   V  + E+ +G  L T ++ A     P  + K     +++
Sbjct: 76  SHPFIVNMMCSFQ----DENRVYFLLEFVVGGELFTHLRKAGR--FPNDVAKFYHAELVL 129

Query: 161 GLDHLHRELSIIHTDLKPENVLL 183
             ++LH    II+ DLKPEN+LL
Sbjct: 130 AFEYLH-SKDIIYRDLKPENLLL 151

Length = 329

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 35/148 (23%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKS----AQHYTEAALDEIKILKQIAEGDPDDKKC 105
           LG G F  V L  +  T  Y A+K+ K     A+      L E ++L+            
Sbjct: 3   LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRH-------- 54

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICF--------- 156
               L   K+S      +C V EY           A+   +  H+ +E  F         
Sbjct: 55  --PFLTALKYSFQTHDRLCFVMEY-----------ANGGELFFHLSRERVFSEDRARFYG 101

Query: 157 -HILVGLDHLHRELSIIHTDLKPENVLL 183
             I+  LD+LH E ++++ DLK EN++L
Sbjct: 102 AEIVSALDYLHSEKNVVYRDLKLENLML 129

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 18/138 (13%)

Query: 53  GHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGD----PDDKKCVVK 108
           G F  V+L      S   A+KV K A    +  + ++      AE D          V  
Sbjct: 15  GAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQV-----QAERDALALSKSPFIV-- 67

Query: 109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR 167
              H  +S  +  +V +V EYL G ++ +L+    Y    +  VK I   + + LD+LHR
Sbjct: 68  ---HLYYSLQSANNVYLVMEYLIGGDVKSLLHIYGYFDEEM-AVKYIS-EVALALDYLHR 122

Query: 168 ELSIIHTDLKPENVLLMS 185
              IIH DLKP+N+L+ +
Sbjct: 123 H-GIIHRDLKPDNMLISN 139

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)

Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
           + LDHLH  L II+ DLKPEN+LL
Sbjct: 109 LALDHLHS-LGIIYRDLKPENILL 131

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 21/140 (15%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGDPDDKKCV 106
           K+G G F  V+   D +T   VA+K+   + A+   E    EI +L Q          C 
Sbjct: 11  KIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQ----------CD 60

Query: 107 VKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLH--MVKEICFHILVGLD 163
              +  +  S      + ++ EYL G + L L++       PL    +  I   IL GLD
Sbjct: 61  SPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLD 115

Query: 164 HLHRELSIIHTDLKPENVLL 183
           +LH E   IH D+K  NVLL
Sbjct: 116 YLHSEKK-IHRDIKAANVLL 134

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	530
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
PTZ00284	467	protein kinase; Provisional	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
KOG1167	418	consensus Serine/threonine protein kinase of the C	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1027	903	consensus Serine/threonine protein kinase and endo	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
KOG1152	772	consensus Signal transduction serine/threonine kin	100.0
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	100.0
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.98
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.97
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.97
KOG3653	534	consensus Transforming growth factor beta/activin	99.97
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.97
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.96
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.96
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.95
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.94
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.94
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.94
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.93
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.93
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.93
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.92
PRK09188	365	serine/threonine protein kinase; Provisional	99.91
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.91
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.9
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.89
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.89
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.88
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.88
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.85
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.85
PRK10345	210	hypothetical protein; Provisional	99.84
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.84
PRK12274	218	serine/threonine protein kinase; Provisional	99.82
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.81
smart00090	237	RIO RIO-like kinase.	99.77
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.71
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.7
PRK14879	211	serine/threonine protein kinase; Provisional	99.69
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.67
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.65
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.63
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.59
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.59
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.57
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.55
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.5
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.41
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.4
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.36
KOG1243	690	consensus Protein kinase [General function predict	99.34
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.34
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.33
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.23
KOG3087	229	consensus Serine/threonine protein kinase [General	99.15
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.0
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.96
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.9
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.9
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.89
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.87
PRK09902	216	hypothetical protein; Provisional	98.61
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.61
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.54
COG4248	637	Uncharacterized protein with protein kinase and he	98.53
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.52
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.5
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.4
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.22
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.22
PF01636	239	APH: Phosphotransferase enzyme family This family	98.19
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	98.16
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.11
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.95
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.88
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.84
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.81
PLN02876	822	acyl-CoA dehydrogenase	97.74
KOG2270	520	consensus Serine/threonine protein kinase involved	97.74
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.74
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.5
KOG1093	725	consensus Predicted protein kinase (contains TBC a	97.3
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.26
PRK05231	319	homoserine kinase; Provisional	97.22
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.22
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	97.19
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.04
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.04
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	96.95
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	96.93
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	96.69
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.57
PRK10593	297	hypothetical protein; Provisional	96.44
PRK12396	409	5-methylribose kinase; Reviewed	96.08
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	96.08
PLN02236	344	choline kinase	95.98
PLN02756	418	S-methyl-5-thioribose kinase	95.81
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	95.73
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	95.37
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	95.16
KOG1236	565	consensus Predicted unusual protein kinase [Genera	95.04
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	94.96
PTZ00384	383	choline kinase; Provisional	94.82
COG2334	331	Putative homoserine kinase type II (protein kinase	94.77
PRK11768	325	serine/threonine protein kinase; Provisional	94.56
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	94.36
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	93.99
PRK06148	1013	hypothetical protein; Provisional	93.27
PHA03111	444	Ser/Thr kinase; Provisional	93.04
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	92.96
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	92.84

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-77  Score=590.02  Aligned_cols=496  Identities=58%  Similarity=0.954  Sum_probs=372.2

Q ss_pred             cccCCCCCCCCCCCccccCCCCCCCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccch
Q 045988            3 EDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYT   82 (530)
Q Consensus         3 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~   82 (530)
                      ++.+...+..+.+++++|+..+|+.||||||+||+.|+++||.++++||.|.|++||+|.|.++.+.||+||.+..+...
T Consensus        39 ~~~~~~~~~~g~~~~eqE~~~dY~kGGYHpV~IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYt  118 (590)
T KOG1290|consen   39 DDPNMSSSILGSDDEEQEDPEDYRKGGYHPVRIGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYT  118 (590)
T ss_pred             cCCCCccccccCCcccccChhhhhcCCCceeeccccccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHH
Confidence            34455667777888899999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC--CCCCcceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 045988           83 EAALDEIKILKQIAEGD--PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILV  160 (530)
Q Consensus        83 ~~~~~Ei~il~~l~~~~--~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~  160 (530)
                      +..+.||++|++++...  .....+||+++|.|...|+++.++|||+|++|.+|+.+|.+..+++++...++.|++|||.
T Consensus       119 EaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~  198 (590)
T KOG1290|consen  119 EAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLT  198 (590)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence            99999999999998654  4456789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCceeccCCCCcEEEeec-cCCCCCCCCCC-CCCccccccc-----------------cccCCCchhHHHHH
Q 045988          161 GLDHLHRELSIIHTDLKPENVLLMSM-IDPSKDPRKSG-PPPMLLTKKD-----------------KLVLDPSNQKKKIK  221 (530)
Q Consensus       161 aL~~LH~~~gIvHrDIKp~NILl~~~-~~~~~~~~~~~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~  221 (530)
                      ||.|||+++||||-||||+|||+... .+........+ ....++..+.                 ........++++++
T Consensus       199 GLdYLH~ecgIIHTDlKPENvLl~~~e~~~~~~~~~a~e~~~~~p~~s~s~~~t~~d~~~~~~~~~~s~~~~k~~~kk~~  278 (590)
T KOG1290|consen  199 GLDYLHRECGIIHTDLKPENVLLCSTEIDPAKDAREAGEATTSLPKMSPSAVSTRPDALQRMAAEPMSKSKFKKMKKKLK  278 (590)
T ss_pred             HHHHHHHhcCccccCCCcceeeeeccccchhhhhhhhccccccCCCCCcccccccccccchhhccccchhhHHHHHHHHh
Confidence            99999999999999999999999653 22211111111 0111110000                 11122234555555


Q ss_pred             HHHHhhhcCCCCcccccc-cCCCC---CCCCCCC-CCCCCCCCC-CCcc-ccccccccccccccccccc----ccCC---
Q 045988          222 KKAKKAAQGCSSNEACEE-NESDS---KPSSPDH-TSVDAEPNG-DSVE-DQQNGSLIKNEATSNEGIN----KDCK---  287 (530)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~----~~~~---  287 (530)
                      ...+...+........+. ...++   .+..... ..+...... .+.. ....+...++.. .+.+.+    +...   
T Consensus       279 r~~~~~~~~l~~~~~~~~~~~~~s~n~~~~~n~~~~~v~~~~~~~~~~~~~~~~n~~~k~~e-~~~~~~~sl~~~~~~~~  357 (590)
T KOG1290|consen  279 RQAKKLEASLAGLEGIEEEPNQESYNNEPRINGNESTVERSTLEEDSNENGNRENLPIKSPE-NFRGNNTSLPESQLRDS  357 (590)
T ss_pred             hhhhhhhhhhcccccccccccccccccccCCCccccchhhcccccccccccCCccccccCcc-ccccccccccchhcccc
Confidence            554444333222211111 00000   0000000 000000000 0000 000001111100 111111    0000   


Q ss_pred             -------CCC-----chh------hhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          288 -------RPS-----RSR------RKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       288 -------~~~-----~~~------~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                             ...     ...      ........+..|||+|||.||+....++..+.|+.|+|||+++|.+|++.+||||+
T Consensus       358 ~t~~~~~~~s~~s~~~~~~n~~v~p~~~~~~~di~vKIaDlGNACW~~khFT~DIQTRQYRapEVllGsgY~~~ADiWS~  437 (590)
T KOG1290|consen  358 ATPSDGSLSSPSSPGTIASNPLVNPDIPLPECDIRVKIADLGNACWVHKHFTEDIQTRQYRAPEVLLGSGYSTSADIWST  437 (590)
T ss_pred             cccccccccCcCCccccccccccCCCCCCCccceeEEEeeccchhhhhhhhchhhhhhhccCcceeecCCCCCchhHHHH
Confidence                   000     000      00112445778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      +|++|||+||.++|.+.+..++.+++++++.|++++|.+|..+..+++++++||++.|.|++++++.+|++..++.+++.
T Consensus       438 AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~  517 (590)
T KOG1290|consen  438 ACMAFELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYE  517 (590)
T ss_pred             HHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCCCCCcccCCCCCCCCCccccccchhhHHHHHHHHhccc
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNI  509 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (530)
                      ++.....++.+||.-||+++|++||||.++|+|||++..+.+ .++...+.             ++..+.++++..++++
T Consensus       518 ~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~hPwLn~~~~~-~~~~~~~~-------------~~~~~~e~v~~~~~~~  583 (590)
T KOG1290|consen  518 WSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLKHPWLNPVAGP-PPSDSPQN-------------EENNEEEDVEGWMNNS  583 (590)
T ss_pred             CCHHHHHHHHHHHHHHHhcCccccccHHHHhcCccccCCCCC-ccccCCcc-------------cccccccccccccccc
Confidence            999999999999999999999999999999999999987765 33322221             3334455666666666


Q ss_pred             cccC
Q 045988          510 AIDG  513 (530)
Q Consensus       510 ~~~~  513 (530)
                      .+.+
T Consensus       584 ~~~~  587 (590)
T KOG1290|consen  584 RIKS  587 (590)
T ss_pred             cccc
Confidence            6554

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=4e-57  Score=463.38  Aligned_cols=317  Identities=37%  Similarity=0.585  Sum_probs=270.1

Q ss_pred             CCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcce
Q 045988           27 RGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCV  106 (530)
Q Consensus        27 ~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~I  106 (530)
                      .++-+.+..++.+ ..+|.|.+.||+|+||+|.+|++..|++.||||+++.......+...|+.||..|+...+.+.-||
T Consensus       172 ~~~dY~~v~~d~i-~~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~  250 (586)
T KOG0667|consen  172 EDGDYQLVVNDHI-AYRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNI  250 (586)
T ss_pred             CCCceeEEeccee-EEEEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeE
Confidence            3445677788888 459999999999999999999999999999999999999889999999999999984444466689


Q ss_pred             eEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          107 VKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       107 v~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      |+++++|..    .+++|||+|++..+|+++++.....+++...++.|+.||+.||.+||+. ||||+|||||||||...
T Consensus       251 Vrm~d~F~f----r~HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l-~IIHcDLKPENILL~~~  325 (586)
T KOG0667|consen  251 VRMLDYFYF----RNHLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHEL-GIIHCDLKPENILLKDP  325 (586)
T ss_pred             EEeeecccc----ccceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCChhheeeccC
Confidence            999999995    4899999999999999999999999999999999999999999999996 99999999999999541


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                      .                                                                               
T Consensus       326 ~-------------------------------------------------------------------------------  326 (586)
T KOG0667|consen  326 K-------------------------------------------------------------------------------  326 (586)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                         ...|||+|||+||...+....++.++.|+|||+++|.+|+.+.||
T Consensus       327 -----------------------------------r~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDm  371 (586)
T KOG0667|consen  327 -----------------------------------RSRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDM  371 (586)
T ss_pred             -----------------------------------cCceeEEecccccccCCcceeeeeccccccchhhccCCCCCccce
Confidence                                               346999999999998888778999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccc-cCccccchhcccC--C---c
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR-HGDLRHIRRLRFW--P---L  420 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~---~  420 (530)
                      ||||||++||++|.++|++.+      +.++++.|++++|.+|..+...+.....||+. .+.++........  .   .
T Consensus       372 WSLGCIlAEL~tG~PLfpG~n------e~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~  445 (586)
T KOG0667|consen  372 WSLGCILAELFTGEPLFPGDN------EYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPE  445 (586)
T ss_pred             eehhhhHHhHhcCccccCCCC------HHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccchh
Confidence            999999999999999998876      89999999999999999999999999999998 5555432211100  0   0


Q ss_pred             h-h-----hhh-------h--hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          421 N-K-----VLI-------E--KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       421 ~-~-----~~~-------~--~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      . +     ...       .  ...........+.|||.+||.+||.+|+|+.|+|+||||+...
T Consensus       446 ~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~~~  509 (586)
T KOG0667|consen  446 VRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTGTS  509 (586)
T ss_pred             hhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCccccccc
Confidence            0 0     000       0  0011123456789999999999999999999999999999543

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=2.4e-57  Score=422.97  Aligned_cols=280  Identities=31%  Similarity=0.517  Sum_probs=234.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|+.+.++|+|+||+||+|+++.||+.||||.+....   ....-.+|||++|++|      .|+|+|.++++|.    
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqL------kH~NLVnLiEVFr----   71 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQL------KHENLVNLIEVFR----   71 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhc------ccchHHHHHHHHH----
Confidence            57999999999999999999999999999999887654   3456678999999999      7888999999999    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....++||+|||..++++.+.... .+++.+.++.|++|++.|+.|||++ ++||||||||||||+.             
T Consensus        72 rkrklhLVFE~~dhTvL~eLe~~p-~G~~~~~vk~~l~Q~l~ai~~cHk~-n~IHRDIKPENILit~-------------  136 (396)
T KOG0593|consen   72 RKRKLHLVFEYCDHTVLHELERYP-NGVPSELVKKYLYQLLKAIHFCHKN-NCIHRDIKPENILITQ-------------  136 (396)
T ss_pred             hcceeEEEeeecchHHHHHHHhcc-CCCCHHHHHHHHHHHHHHhhhhhhc-CeecccCChhheEEec-------------
Confidence            457899999999999999888655 4599999999999999999999998 9999999999999976             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (396)
T KOG0593|consen  137 --------------------------------------------------------------------------------  136 (396)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                             .+.+||||||+|+...   ...+.++.|+||+|||.+.| ..|+..+||||+||++.
T Consensus       137 -----------------------~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~a  193 (396)
T KOG0593|consen  137 -----------------------NGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFA  193 (396)
T ss_pred             -----------------------CCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHH
Confidence                                   5679999999998755   34678899999999999998 67999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      ||++|.+.|++.+      +.+++..|...+|..+++-.       ..|..++.+..++.....-.. .+..+   .+..
T Consensus       194 El~~G~pL~PG~S------DiDQLy~I~ktLG~L~prhq-------~iF~~N~~F~Gv~lP~~~~~e-pLe~k---~p~~  256 (396)
T KOG0593|consen  194 ELLTGEPLWPGRS------DIDQLYLIRKTLGNLIPRHQ-------SIFSSNPFFHGVRLPEPEHPE-PLERK---YPKI  256 (396)
T ss_pred             HHhcCCcCCCCcc------hHHHHHHHHHHHcccCHHHH-------HHhccCCceeeeecCCCCCcc-chhhh---cccc
Confidence            9999999999988      89999999999998876532       223333333333221111111 11111   1244


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      +.-+.||+++||+.||.+|++.+|+|.||||.
T Consensus       257 s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd  288 (396)
T KOG0593|consen  257 SNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFD  288 (396)
T ss_pred             hHHHHHHHHHHhcCCccccccHHHHhcChHHH
Confidence            56789999999999999999999999999994

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-58  Score=450.28  Aligned_cols=287  Identities=33%  Similarity=0.525  Sum_probs=239.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHH--HHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAA--LDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~--~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ..++|.++++||.|+||.||+|..+.+|..||||.+++.-...++.  +||+..|++|.     .|||||++++++.+. 
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln-----~hpniikL~Evi~d~-   81 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLN-----PHPNIIKLKEVIRDN-   81 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcC-----CCCcchhhHHHhhcc-
Confidence            3579999999999999999999999999999999887765444443  68999999993     499999999999964 


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                        ...+|+|||||.++|+++|+.+ .+.|++..++.||+||++||+|+|.+ |+.|||+||||||+..            
T Consensus        82 --~~~L~fVfE~Md~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~-GfFHRDlKPENiLi~~------------  145 (538)
T KOG0661|consen   82 --DRILYFVFEFMDCNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKH-GFFHRDLKPENILISG------------  145 (538)
T ss_pred             --CceEeeeHHhhhhhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhc-CcccccCChhheEecc------------
Confidence              2399999999999999999876 67799999999999999999999998 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (538)
T KOG0661|consen  146 --------------------------------------------------------------------------------  145 (538)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~  354 (530)
                                              ...+||+|||+|+...  ...+.++.|+||+|||+++... |+.++||||+|||++
T Consensus       146 ------------------------~~~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~a  201 (538)
T KOG0661|consen  146 ------------------------NDVIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMA  201 (538)
T ss_pred             ------------------------cceeEecccccccccccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHH
Confidence                                    3569999999998754  4578999999999999998755 899999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |+.+-++.|+|.+      +.|++..|..++|++.+..|..+.          .+.......+.......... .+ ...
T Consensus       202 El~sLrPLFPG~s------E~Dqi~KIc~VLGtP~~~~~~eg~----------~La~~mnf~~P~~~~~~l~~-L~-p~~  263 (538)
T KOG0661|consen  202 ELYSLRPLFPGAS------EIDQIYKICEVLGTPDKDSWPEGY----------NLASAMNFRFPQVKPSPLKD-LL-PNA  263 (538)
T ss_pred             HHHHhcccCCCCc------HHHHHHHHHHHhCCCccccchhHH----------HHHHHhccCCCcCCCCChHH-hC-ccc
Confidence            9999999999987      899999999999999887765431          11111111221111111111 12 237


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      +.++.+||.+||.|||.+||||.|+|+||||+....
T Consensus       264 s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~~~  299 (538)
T KOG0661|consen  264 SSEAASLIERLLAWDPDKRPTASQALQHPFFQVGRA  299 (538)
T ss_pred             CHHHHHHHHHHhcCCCccCccHHHHhcCcccccccc
Confidence            889999999999999999999999999999987643

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.3e-57  Score=437.34  Aligned_cols=256  Identities=30%  Similarity=0.491  Sum_probs=213.1

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--------chHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ++.|.+.+.||+|+||.|-+|..+.||+.||||++++...        ....+.+|++||++|      +|||||+++++
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL------~HP~IV~~~d~  244 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKL------SHPNIVRIKDF  244 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhc------CCCCEEEEeee
Confidence            5789999999999999999999999999999999886432        223457999999999      88999999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      |..    .++.||||||+ ||+|++.+-..  +.+.+...+.+++||+.||.|||++ ||+||||||+|||+....    
T Consensus       245 f~~----~ds~YmVlE~v~GGeLfd~vv~n--k~l~ed~~K~~f~Qll~avkYLH~~-GI~HRDiKPeNILl~~~~----  313 (475)
T KOG0615|consen  245 FEV----PDSSYMVLEYVEGGELFDKVVAN--KYLREDLGKLLFKQLLTAVKYLHSQ-GIIHRDIKPENILLSNDA----  313 (475)
T ss_pred             eec----CCceEEEEEEecCccHHHHHHhc--cccccchhHHHHHHHHHHHHHHHHc-CcccccCCcceEEeccCC----
Confidence            994    47889999999 99999988643  4488999999999999999999997 999999999999995521    


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       314 --------------------------------------------------------------------------------  313 (475)
T KOG0615|consen  314 --------------------------------------------------------------------------------  313 (475)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCC---CCCcchh
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSK---YSTPADL  346 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~---~~~~~Di  346 (530)
                                                   .+..+||.|||+|+...  .-..+.||||.|.|||++.++.   |..++||
T Consensus       314 -----------------------------e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDi  364 (475)
T KOG0615|consen  314 -----------------------------EDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDI  364 (475)
T ss_pred             -----------------------------cceEEEecccchhhccccceehhhhcCCccccChhheecCCeecccchhee
Confidence                                         14569999999998864  3467889999999999998765   3458899


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||+||.+|+|.+||.......     ....                                          ++...
T Consensus       365 WSlGcvLfvcLsG~pPFS~~~~~~-----sl~e------------------------------------------QI~~G  397 (475)
T KOG0615|consen  365 WSLGCVLFVCLSGYPPFSEEYTDP-----SLKE------------------------------------------QILKG  397 (475)
T ss_pred             eeccceEEEEeccCCCcccccCCc-----cHHH------------------------------------------HHhcC
Confidence            999999999999999997544221     0111                                          11111


Q ss_pred             hc----cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          427 KY----DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       427 ~~----~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .+    ..+..++.++++||.+||..||++|||++|+|+||||+..+
T Consensus       398 ~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  398 RYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPWFKDAP  444 (475)
T ss_pred             cccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChhhhccc
Confidence            22    23456789999999999999999999999999999999766

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=8e-56  Score=406.33  Aligned_cols=290  Identities=32%  Similarity=0.490  Sum_probs=242.2

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .+|...++||+|.||.||+|++..+|+.||||.++...   .......|||+.|+.+      +|+||+.++|+|.+   
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel------~h~nIi~LiD~F~~---   72 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQEL------KHPNIIELIDVFPH---   72 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHc------cCcchhhhhhhccC---
Confidence            57999999999999999999999999999999887653   3356789999999999      78889999999995   


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                       ...+.||+||+..+|..+|+... ..++...++.|+.+++.||+|||++ .|+||||||.|+|++.             
T Consensus        73 -~~~l~lVfEfm~tdLe~vIkd~~-i~l~pa~iK~y~~m~LkGl~y~H~~-~IlHRDlKPnNLLis~-------------  136 (318)
T KOG0659|consen   73 -KSNLSLVFEFMPTDLEVVIKDKN-IILSPADIKSYMLMTLKGLAYCHSK-WILHRDLKPNNLLISS-------------  136 (318)
T ss_pred             -CCceEEEEEeccccHHHHhcccc-cccCHHHHHHHHHHHHHHHHHHHhh-hhhcccCCccceEEcC-------------
Confidence             47899999999999999997543 4589999999999999999999998 9999999999999965             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (318)
T KOG0659|consen  137 --------------------------------------------------------------------------------  136 (318)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~  354 (530)
                                             ++.+||+|||+|+.....   .+..+-|+||+|||++.|.. |+..+||||+|||++
T Consensus       137 -----------------------~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~A  193 (318)
T KOG0659|consen  137 -----------------------DGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFA  193 (318)
T ss_pred             -----------------------CCcEEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHH
Confidence                                   678999999999875533   44558899999999999865 999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      ||+-|.+.|+|.+      +.+++..|++.+|++-++.|.....-.+|          ..+.+.|....   . .+-...
T Consensus       194 ELllr~P~fpG~s------DidQL~~If~~LGTP~~~~WP~~~~lpdY----------~~~~~~P~~~~---~-~lf~aa  253 (318)
T KOG0659|consen  194 ELLLRVPFFPGDS------DIDQLSKIFRALGTPTPDQWPEMTSLPDY----------VKIQQFPKPPL---N-NLFPAA  253 (318)
T ss_pred             HHHccCCCCCCCc------hHHHHHHHHHHcCCCCcccCccccccccH----------HHHhcCCCCcc---c-cccccc
Confidence            9999999999887      89999999999999988777554432222          11111111110   0 023345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCCCCCcccC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAAT  479 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~~~~~~  479 (530)
                      +.++.||+.+||.+||.+|+|+.|+|+|+||+..|.+..|+..+.
T Consensus       254 s~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P~pt~~~~lp~  298 (318)
T KOG0659|consen  254 SSDALDLLSKMLTYNPKKRITASQALKHPYFKSLPLPTPPSKLPI  298 (318)
T ss_pred             cHHHHHHHHhhhccCchhcccHHHHhcchhhhcCCCCCChhhCcC
Confidence            677899999999999999999999999999999887666655443

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=6.9e-56  Score=418.30  Aligned_cols=305  Identities=31%  Similarity=0.428  Sum_probs=254.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      -+.|+.+.+|++|+||.||+|+++.|++.||+|.++...   ...-..+|||.+|.++      +|||||.+-++.... 
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~------~H~NIV~vkEVVvG~-  147 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKA------RHPNIVEVKEVVVGS-  147 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhc------CCCCeeeeEEEEecc-
Confidence            367999999999999999999999999999999887653   3455678999999999      788899999998855 


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       +-+.+|||||||..+|..++.... ..+...+++.++.||+.||+|||.+ .|+||||||+|+|++.            
T Consensus       148 -~~d~iy~VMe~~EhDLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~~-wilHRDLK~SNLLm~~------------  212 (419)
T KOG0663|consen  148 -NMDKIYIVMEYVEHDLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHDN-WILHRDLKTSNLLLSH------------  212 (419)
T ss_pred             -ccceeeeeHHHHHhhHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhhc-eeEecccchhheeecc------------
Confidence             557799999999999999998655 5699999999999999999999997 9999999999999966            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (419)
T KOG0663|consen  213 --------------------------------------------------------------------------------  212 (419)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il  353 (530)
                                              .+.+|++|||+|+.....   .+..+-|.||+|||++++.+ |++++|+||+|||+
T Consensus       213 ------------------------~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~  268 (419)
T KOG0663|consen  213 ------------------------KGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIF  268 (419)
T ss_pred             ------------------------CCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHH
Confidence                                    678999999999876655   78888999999999999865 99999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc-hhhhhhhccCCh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL-NKVLIEKYDFSE  432 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  432 (530)
                      .||+++.+.|++.+      +.+++..|+.++|.+.+.+|.+...          +..+....+... ...+...+....
T Consensus       269 aE~l~~kPlf~G~s------E~dQl~~If~llGtPte~iwpg~~~----------lp~~k~~~f~~~pyn~lr~kF~~~~  332 (419)
T KOG0663|consen  269 AELLTQKPLFPGKS------EIDQLDKIFKLLGTPSEAIWPGYSE----------LPAVKKMTFSEHPYNNLRKKFGALS  332 (419)
T ss_pred             HHHHhcCCCCCCCc------hHHHHHHHHHHhCCCccccCCCccc----------cchhhccccCCCCchhhhhhccccc
Confidence            99999999999988      8999999999999999988865431          111111111000 011111111111


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCCCCCcccCCCCCCCCCc
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQDTGGSI  488 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~~~~~~~~~~~~~~~  488 (530)
                       .+....+||..+|.+||.+|+||.|+|+|+||.+.|.+..|...++.|.......
T Consensus       333 -lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~P~p~~P~~~Pt~P~k~~~~~  387 (419)
T KOG0663|consen  333 -LSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQR  387 (419)
T ss_pred             -cchhHHHHHHHHhccCccccccHHHhhcccccccCCCCCChhhcCCCcccccccc
Confidence             5688899999999999999999999999999999999999988888877655443

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-55  Score=445.75  Aligned_cols=258  Identities=28%  Similarity=0.448  Sum_probs=226.9

Q ss_pred             ccCcEeeC---CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecc----cccchHHHHHHHHHHHHhhcCCCCCCcce
Q 045988           34 RMGDTFKN---GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKS----AQHYTEAALDEIKILKQIAEGDPDDKKCV  106 (530)
Q Consensus        34 ~~g~~~~~---~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~----~~~~~~~~~~Ei~il~~l~~~~~~~h~~I  106 (530)
                      .+|+.|.+   .+|...+.||+|||+.||.+++..+|+.||+|++.+    .....+.+.+||+|++.|      .||||
T Consensus         7 ~ip~~i~D~~~~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L------~HpnI   80 (592)
T KOG0575|consen    7 EIPEVIEDPRSKRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSL------KHPNI   80 (592)
T ss_pred             CCCCeeecCCcceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhc------CCCcE
Confidence            45555522   569999999999999999999999999999999887    456788999999999999      78889


Q ss_pred             eEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          107 VKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       107 v~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      |+++++|+    +.+++|||+|+| .++|..+++  ..+.++|.+++.+++||+.||.|||++ +|||||||..||||+.
T Consensus        81 V~f~~~FE----Ds~nVYivLELC~~~sL~el~K--rrk~ltEpEary~l~QIv~GlkYLH~~-~IiHRDLKLGNlfL~~  153 (592)
T KOG0575|consen   81 VQFYHFFE----DSNNVYIVLELCHRGSLMELLK--RRKPLTEPEARYFLRQIVEGLKYLHSL-GIIHRDLKLGNLFLNE  153 (592)
T ss_pred             EeeeeEee----cCCceEEEEEecCCccHHHHHH--hcCCCCcHHHHHHHHHHHHHHHHHHhc-CceecccchhheeecC
Confidence            99999999    458999999999 889999887  345599999999999999999999997 9999999999999966


Q ss_pred             ccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q 045988          186 MIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVED  265 (530)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (592)
T KOG0575|consen  154 --------------------------------------------------------------------------------  153 (592)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCC
Q 045988          266 QQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYST  342 (530)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~  342 (530)
                                                          +.+|||+|||+|....   +...+.+|||.|.|||++....+++
T Consensus       154 ------------------------------------~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsf  197 (592)
T KOG0575|consen  154 ------------------------------------NMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSF  197 (592)
T ss_pred             ------------------------------------cCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCC
Confidence                                                5689999999998765   4567889999999999999999999


Q ss_pred             cchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchh
Q 045988          343 PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       343 ~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      .+||||+|||||.||+|+|||...          .+..+                                      ..+
T Consensus       198 EvDiWSlGcvmYtLL~G~PPFetk----------~vket--------------------------------------y~~  229 (592)
T KOG0575|consen  198 EVDIWSLGCVMYTLLVGRPPFETK----------TVKET--------------------------------------YNK  229 (592)
T ss_pred             chhhhhhhhHHHhhhhCCCCcccc----------hHHHH--------------------------------------HHH
Confidence            999999999999999999999533          22222                                      234


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +....+.+|...+.++++||.+||..||.+|||+++||.|+||+.+
T Consensus       230 Ik~~~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~~g  275 (592)
T KOG0575|consen  230 IKLNEYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLDHPFFKSG  275 (592)
T ss_pred             HHhcCcccccccCHHHHHHHHHHhcCCcccCCCHHHHhcCHhhhCC
Confidence            4445567788899999999999999999999999999999999665

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-55  Score=437.14  Aligned_cols=295  Identities=27%  Similarity=0.411  Sum_probs=247.0

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ..+.|+.+++||+|+||.||+|++..+|+.||+|.+...   ........|||.||++|      +||||+++.+.....
T Consensus       115 ~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l------~HpNIikL~eivt~~  188 (560)
T KOG0600|consen  115 RADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRL------DHPNIIKLEEIVTSK  188 (560)
T ss_pred             chHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhc------CCCcccceeeEEEec
Confidence            356789999999999999999999999999999976654   34566778999999999      889999999999865


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ....+|||+|||..||..++... .-.|++.+++.||+||+.||+|||++ ||+|||||..||||+.           
T Consensus       189 --~~~siYlVFeYMdhDL~GLl~~p-~vkft~~qIKc~mkQLl~Gl~~cH~~-gvlHRDIK~SNiLidn-----------  253 (560)
T KOG0600|consen  189 --LSGSIYLVFEYMDHDLSGLLSSP-GVKFTEPQIKCYMKQLLEGLEYCHSR-GVLHRDIKGSNILIDN-----------  253 (560)
T ss_pred             --CCceEEEEEecccchhhhhhcCC-CcccChHHHHHHHHHHHHHHHHHhhc-CeeeccccccceEEcC-----------
Confidence              34789999999999999998643 23499999999999999999999997 9999999999999966           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       254 --------------------------------------------------------------------------------  253 (560)
T KOG0600|consen  254 --------------------------------------------------------------------------------  253 (560)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc----cccCCCCCCCCccCChhhcCCC-CCCcchhHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY----KQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFAC  351 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~----~~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~  351 (530)
                                               .+.+||+|||+|+...    ...++.|-|.||+|||+++|.. |+.++|+||+||
T Consensus       254 -------------------------~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GC  308 (560)
T KOG0600|consen  254 -------------------------NGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGC  308 (560)
T ss_pred             -------------------------CCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhH
Confidence                                     6789999999998532    3478889999999999999865 999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ||.||+.|++.|++.+      +.+++..|+.++|.+.+..|....  ..++....        ...+....+.+.+   
T Consensus       309 Il~El~~gkPI~~G~t------EveQl~kIfklcGSP~e~~W~~~k--LP~~~~~k--------p~~~y~r~l~E~~---  369 (560)
T KOG0600|consen  309 ILAELFLGKPILQGRT------EVEQLHKIFKLCGSPTEDYWPVSK--LPHATIFK--------PQQPYKRRLRETF---  369 (560)
T ss_pred             HHHHHHcCCCCcCCcc------HHHHHHHHHHHhCCCChhcccccc--CCcccccC--------CCCcccchHHHHh---
Confidence            9999999999998876      899999999999999988875211  11111110        0111223333332   


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCCCCCcccC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAAT  479 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~~~~~~  479 (530)
                      ...+..+.+||..||+.||.+|.||.++|.|+||+..|....|+.++.
T Consensus       370 ~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t~p~~~~p~~Lp~  417 (560)
T KOG0600|consen  370 KDFPASALDLLEKLLSLDPDKRGTASSALQSEYFTTEPLPCDPSSLPK  417 (560)
T ss_pred             ccCCHHHHHHHHHHhccCccccccHHHHhcCcccccCCCCCCcccCCC
Confidence            245678899999999999999999999999999998888888887776

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-54  Score=412.32  Aligned_cols=260  Identities=28%  Similarity=0.428  Sum_probs=221.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecc--cccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKS--AQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~--~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .+.+.++.||+|+.|+||+|+|+.|++.||+|++..  ......++.+|++|++.+      +||+||++|+.|...+  
T Consensus        79 ~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~------~spyIV~~ygaF~~~~--  150 (364)
T KOG0581|consen   79 SDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSC------QSPYIVGFYGAFYSNG--  150 (364)
T ss_pred             HHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhC------CCCCeeeEeEEEEeCC--
Confidence            478889999999999999999999999999999843  344567889999999999      8899999999999753  


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                       ..++|+|||| +|+|..++...  +.+++.....++.+|++||.|||...+||||||||+|||+..             
T Consensus       151 -~~isI~mEYMDgGSLd~~~k~~--g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNs-------------  214 (364)
T KOG0581|consen  151 -EEISICMEYMDGGSLDDILKRV--GRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNS-------------  214 (364)
T ss_pred             -ceEEeehhhcCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeecc-------------
Confidence             2799999999 99999998754  559999999999999999999996349999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (364)
T KOG0581|consen  215 --------------------------------------------------------------------------------  214 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                             .++|||||||.+...... ..+++||..|||||.+.+..|+.++||||||++++||.
T Consensus       215 -----------------------kGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a  271 (364)
T KOG0581|consen  215 -----------------------KGEVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELA  271 (364)
T ss_pred             -----------------------CCCEEeccccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHh
Confidence                                   678999999999765444 57889999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh-cHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK-DAN  436 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  436 (530)
                      +|++||.+..    ....+.+..+..++-.+|+.                                      ++.. .++
T Consensus       272 ~GrfP~~~~~----~~~~~~~~Ll~~Iv~~ppP~--------------------------------------lP~~~fS~  309 (364)
T KOG0581|consen  272 IGRFPYPPPN----PPYLDIFELLCAIVDEPPPR--------------------------------------LPEGEFSP  309 (364)
T ss_pred             hCCCCCCCcC----CCCCCHHHHHHHHhcCCCCC--------------------------------------CCcccCCH
Confidence            9999997641    12334455555554433332                                      2333 689


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ++++||..||+.||.+||++.|+|+|||++....
T Consensus       310 ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~~~  343 (364)
T KOG0581|consen  310 EFRSFVSCCLRKDPSERPSAKQLLQHPFIKKFED  343 (364)
T ss_pred             HHHHHHHHHhcCCcccCCCHHHHhcCHHHhhccc
Confidence            9999999999999999999999999999996543

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-53  Score=406.97  Aligned_cols=259  Identities=26%  Similarity=0.381  Sum_probs=218.6

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      ........++|+++++||+|+||+||+++.+.+++.||+|++++..    ........|..||.++      +||+||++
T Consensus        17 ~~~~~~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v------~hPFiv~l   90 (357)
T KOG0598|consen   17 NNAEMVGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKI------KHPFIVKL   90 (357)
T ss_pred             cccccCChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhC------CCCcEeee
Confidence            3334555789999999999999999999999999999999988764    2356678899999998      89999999


Q ss_pred             cceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccC
Q 045988          110 LDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID  188 (530)
Q Consensus       110 ~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~  188 (530)
                      +..|+    +...+|||+||+ ||.|+..+++  .+.+++..++.|+..|+.||.|||++ ||||||||||||||+.   
T Consensus        91 ~ysFQ----t~~kLylVld~~~GGeLf~hL~~--eg~F~E~~arfYlaEi~lAL~~LH~~-gIiyRDlKPENILLd~---  160 (357)
T KOG0598|consen   91 IYSFQ----TEEKLYLVLDYLNGGELFYHLQR--EGRFSEDRARFYLAEIVLALGYLHSK-GIIYRDLKPENILLDE---  160 (357)
T ss_pred             EEecc----cCCeEEEEEeccCCccHHHHHHh--cCCcchhHHHHHHHHHHHHHHHHHhC-CeeeccCCHHHeeecC---
Confidence            99999    668999999999 9999999974  44599999999999999999999997 9999999999999976   


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (357)
T KOG0598|consen  161 --------------------------------------------------------------------------------  160 (357)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcch
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                       .+.++|+|||+++...   ....+++||+.|||||++.+.+|+.++|
T Consensus       161 ---------------------------------~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vD  207 (357)
T KOG0598|consen  161 ---------------------------------QGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVD  207 (357)
T ss_pred             ---------------------------------CCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCcccc
Confidence                                             6889999999997432   2345679999999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      +|||||++|+|++|.+||.+.+          ...++                                      .++..
T Consensus       208 WWsLGillYeML~G~pPF~~~~----------~~~~~--------------------------------------~~I~~  239 (357)
T KOG0598|consen  208 WWSLGILLYEMLTGKPPFYAED----------VKKMY--------------------------------------DKILK  239 (357)
T ss_pred             hHhHHHHHHHHhhCCCCCcCcc----------HHHHH--------------------------------------HHHhc
Confidence            9999999999999999996433          11221                                      12222


Q ss_pred             hhc-cCChhcHHHHHHHHhhccCcCCCCCc----CHHHHhcCCCCCCCC
Q 045988          426 EKY-DFSEKDANDMADFLVPILDFVPEKRP----TAAQCLTHPWINVGP  469 (530)
Q Consensus       426 ~~~-~~~~~~~~~~~dLl~~mL~~dP~~Rp----ta~elL~hp~f~~~~  469 (530)
                      .+. ..+.-.+.++++||+++|..||++|.    .+.++-+||||..-.
T Consensus       240 ~k~~~~p~~ls~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~in  288 (357)
T KOG0598|consen  240 GKLPLPPGYLSEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGIN  288 (357)
T ss_pred             CcCCCCCccCCHHHHHHHHHHhccCHHHhcCCCCChHHhhcCcccccCC
Confidence            221 22333678999999999999999996    699999999998754

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6e-53  Score=404.44  Aligned_cols=288  Identities=31%  Similarity=0.474  Sum_probs=233.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecc---cccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec-
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKS---AQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS-  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~---~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~-  116 (530)
                      ..+|..++.||+|+||.|+.|.++.+|+.||||.+..   ......+..||+++|+.+      .|+||+.+++++..+ 
T Consensus        21 ~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~------~HeNIi~l~di~~p~~   94 (359)
T KOG0660|consen   21 PRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHL------RHENIIGLLDIFRPPS   94 (359)
T ss_pred             cceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHh------cCCCcceEEeeccccc
Confidence            4566668999999999999999999999999997652   344567788999999999      678899999999862 


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      ...-..+|+|+|+|+.+|..+++...  .+++..++.+++||+.||+|+|+. ||+|||+||.|+|+..           
T Consensus        95 ~~~f~DvYiV~elMetDL~~iik~~~--~L~d~H~q~f~YQiLrgLKyiHSA-nViHRDLKPsNll~n~-----------  160 (359)
T KOG0660|consen   95 RDKFNDVYLVFELMETDLHQIIKSQQ--DLTDDHAQYFLYQILRGLKYIHSA-NVIHRDLKPSNLLLNA-----------  160 (359)
T ss_pred             ccccceeEEehhHHhhHHHHHHHcCc--cccHHHHHHHHHHHHHhcchhhcc-cccccccchhheeecc-----------
Confidence            22447899999999999999997433  399999999999999999999996 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (359)
T KOG0660|consen  161 --------------------------------------------------------------------------------  160 (359)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccc-----ccccCCCCCCCCccCChhhcC-CCCCCcchhHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT-----YKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFA  350 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~-----~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG  350 (530)
                                               +..+|+||||+|+..     ....+.++-|+||+|||+++. ..|+.++||||+|
T Consensus       161 -------------------------~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvG  215 (359)
T KOG0660|consen  161 -------------------------DCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVG  215 (359)
T ss_pred             -------------------------CCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhh
Confidence                                     445799999999876     334688999999999999875 4699999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCC--cccccccccCccccchhcccCCchhhhhhhc
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGR--YSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||+||++|++.|+|..      ..+++..|+.++|+++++....-.  ....+....+....      .++..      
T Consensus       216 CI~AEmL~gkplFpG~d------~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~------~~f~~------  277 (359)
T KOG0660|consen  216 CILAEMLTGKPLFPGKD------YVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPK------QPFSS------  277 (359)
T ss_pred             HHHHHHHcCCCCCCCCc------hHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCC------CCHHH------
Confidence            99999999999998876      889999999999999877653322  11111111110000      00111      


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLL  472 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~  472 (530)
                      .+ +..++.+.|||.+||.+||.+|+|++|+|+||||..-..+.
T Consensus       278 ~f-p~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~  320 (359)
T KOG0660|consen  278 IF-PNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPE  320 (359)
T ss_pred             Hc-CCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCc
Confidence            12 25678899999999999999999999999999998765433

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=2e-52  Score=417.50  Aligned_cols=252  Identities=30%  Similarity=0.434  Sum_probs=220.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ...+|.+.+.||+|+|++|++|+++.+++.|||||+.+.-    .....+.+|-.+|.+|.     +||+|+++|..|+ 
T Consensus        71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~-----~hPgivkLy~TFQ-  144 (604)
T KOG0592|consen   71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLS-----GHPGIVKLYFTFQ-  144 (604)
T ss_pred             ChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhh-----CCCCeEEEEEEee-
Confidence            3578999999999999999999999999999999977642    23455678999999996     7999999999999 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         +...+|+|+||+ +|+|+++|++  .+.|++..++.++.||+.||+|||++ ||||||||||||||+.         
T Consensus       145 ---D~~sLYFvLe~A~nGdll~~i~K--~Gsfde~caR~YAAeIldAleylH~~-GIIHRDlKPENILLd~---------  209 (604)
T KOG0592|consen  145 ---DEESLYFVLEYAPNGDLLDLIKK--YGSFDETCARFYAAEILDALEYLHSN-GIIHRDLKPENILLDK---------  209 (604)
T ss_pred             ---cccceEEEEEecCCCcHHHHHHH--hCcchHHHHHHHHHHHHHHHHHHHhc-CceeccCChhheeEcC---------
Confidence               558999999999 9999999984  45699999999999999999999997 9999999999999976         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       210 --------------------------------------------------------------------------------  209 (604)
T KOG0592|consen  210 --------------------------------------------------------------------------------  209 (604)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------------cCCCCCCCCccCChhhcCC
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------------FTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------------~~~~~gt~~y~aPE~l~~~  338 (530)
                                                 ++.++|.|||.|......                ..++|||..|.+||+|..+
T Consensus       210 ---------------------------dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~  262 (604)
T KOG0592|consen  210 ---------------------------DGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDS  262 (604)
T ss_pred             ---------------------------CCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCC
Confidence                                       678999999999653211                1458999999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccC
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (530)
                      ..++.+|||+||||||+|+.|.+||.+.+      +...                                         
T Consensus       263 ~~~~~sDiWAlGCilyQmlaG~PPFra~N------eyli-----------------------------------------  295 (604)
T KOG0592|consen  263 PAGPSSDLWALGCILYQMLAGQPPFRAAN------EYLI-----------------------------------------  295 (604)
T ss_pred             CCCcccchHHHHHHHHHHhcCCCCCcccc------HHHH-----------------------------------------
Confidence            99999999999999999999999997544      2222                                         


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                       +.+|+.-.+.+++..++.+.|||+++|..||.+|+|+.||.+||||..
T Consensus       296 -FqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~  343 (604)
T KOG0592|consen  296 -FQKIQALDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAHPFFEG  343 (604)
T ss_pred             -HHHHHHhcccCCCCCCHHHHHHHHHHHccCccccccHHHHhhCccccc
Confidence             345555567888888999999999999999999999999999999975

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.2e-51  Score=395.18  Aligned_cols=289  Identities=33%  Similarity=0.466  Sum_probs=236.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcc-eeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKC-VVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~-Iv~~~~~~~~~~  117 (530)
                      ..|..+++||+|+||+||+|+.+.+|+.||+|.+.....   ......+|+.+|+.|      .|+| ||.+++++....
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L------~~~~~iv~L~dv~~~~~   84 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRL------SHANHIVRLHDVIHTSN   84 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHh------CCCcceEEEEeeeeecc
Confidence            468888999999999999999999999999998876543   567789999999999      4555 999999998542


Q ss_pred             --CCCcEEEEEEeccCcCHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          118 --PNGQHVCMVFEYLGENLLTLIKYADY--RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       118 --~~~~~~~lVmE~~~~~L~~~i~~~~~--~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                        .....+++||||+..+|..++.....  .+++...++.+++||+.||+|||++ +|+||||||+||||+.        
T Consensus        85 ~~~~~~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~-~IlHRDLKPQNlLi~~--------  155 (323)
T KOG0594|consen   85 NHRGIGKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH-GILHRDLKPQNLLISS--------  155 (323)
T ss_pred             cccccceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC-CeecccCCcceEEECC--------
Confidence              11238999999999999999987664  3688899999999999999999998 9999999999999965        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (323)
T KOG0594|consen  156 --------------------------------------------------------------------------------  155 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCC-CCCCcchhHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSF  349 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSl  349 (530)
                                                  .+.+||+|||+|+...   ...++.++|.||+|||++++. .|++.+||||+
T Consensus       156 ----------------------------~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~  207 (323)
T KOG0594|consen  156 ----------------------------SGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSL  207 (323)
T ss_pred             ----------------------------CCcEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhH
Confidence                                        5679999999997543   336778899999999999997 59999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      |||++||+++++.|++.+      +.+++..|++++|++.++.|.+.....++-.....+.         ..+.+..   
T Consensus       208 GcIfaEm~~~~~LFpG~s------e~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~---------~~~~l~~---  269 (323)
T KOG0594|consen  208 GCIFAEMFTRRPLFPGDS------EIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWP---------GPKDLSS---  269 (323)
T ss_pred             HHHHHHHHhCCCCCCCCc------HHHHHHHHHHHcCCCCccCCCCccccccccccCcCCC---------CccchHH---
Confidence            999999999999999877      6999999999999999988866553333221111100         0000110   


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      .-+...++..+|+.+||+++|.+|+||+.+|.||||...+..
T Consensus       270 ~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~~  311 (323)
T KOG0594|consen  270 ILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPEK  311 (323)
T ss_pred             hccccCccHHHHHHHHhccCcccCcCHHHHhcChhhcccccc
Confidence            111223678999999999999999999999999999987653

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.2e-52  Score=397.33  Aligned_cols=284  Identities=29%  Similarity=0.438  Sum_probs=232.8

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC-Cc
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN-GQ  121 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~-~~  121 (530)
                      .|.-.+++|.|+||.||+|....+++.||||..-....   --.+|+.||+++      +|||||++..+|...... .-
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r---~knrEl~im~~l------~HpNIV~L~~~f~~~~~~d~~   95 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR---YKNRELQIMRKL------DHPNIVRLLYFFSSSTESDEV   95 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC---cCcHHHHHHHhc------CCcCeeeEEEEEEecCCCchh
Confidence            68999999999999999999999999999997655443   234799999988      899999999999987644 34


Q ss_pred             EEEEEEeccCcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          122 HVCMVFEYLGENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       122 ~~~lVmE~~~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      +..+||||++.+|..+++..  ....++.-.++-+++||+.||+|||+. ||+||||||.|+|++..             
T Consensus        96 ~lnlVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~-~IcHRDIKPqNlLvD~~-------------  161 (364)
T KOG0658|consen   96 YLNLVLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH-GICHRDIKPQNLLVDPD-------------  161 (364)
T ss_pred             HHHHHHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc-CcccCCCChheEEEcCC-------------
Confidence            77899999999999999753  234588999999999999999999995 99999999999999652             


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (364)
T KOG0658|consen  162 --------------------------------------------------------------------------------  161 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccc--ccccCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT--YKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~--~~~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~el  356 (530)
                                            .+.+||||||.|+..  .+...++..|++|+|||.+.|.. |+.+.||||.||+++||
T Consensus       162 ----------------------tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aEL  219 (364)
T KOG0658|consen  162 ----------------------TGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAEL  219 (364)
T ss_pred             ----------------------CCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHH
Confidence                                  467999999999864  34456778999999999999865 99999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      +-|.+.|+|.+      ..+++..|++++|.+..+..........-+.            ++......... .+....++
T Consensus       220 l~g~plFpG~s------~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~------------~p~ik~~~~~~-~~~~~~~~  280 (364)
T KOG0658|consen  220 LKGQPLFPGDS------SVDQLVEIIKVLGTPTREDIKSMNPNYTEFK------------FPQIKAHPWHK-VFFKRLPP  280 (364)
T ss_pred             hcCCcccCCCC------HHHHHHHHHHHhCCCCHHHHhhcCccccccc------------Cccccccccee-ecccCCCH
Confidence            99999999877      8899999999999998876654433211100            00011111000 23455678


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ++.+|+.++|.++|.+|.++.|+|.||||.+...
T Consensus       281 d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~  314 (364)
T KOG0658|consen  281 DALDLLSKLLQYSPSKRLSALEALAHPFFDELRD  314 (364)
T ss_pred             HHHHHHHHHhccChhhcCCHHHHhcchhhHHhhC
Confidence            9999999999999999999999999999987543

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.2e-52  Score=398.17  Aligned_cols=331  Identities=33%  Similarity=0.559  Sum_probs=261.8

Q ss_pred             CccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           29 GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        29 ~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      |..-...||.+ .++|.++..+|+|+||.|-.|.+..++..|||||++.-....+..+-|+++|.+|.+..+..---+|+
T Consensus        77 GH~v~~~gD~l-~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~  155 (415)
T KOG0671|consen   77 GHYVYQVGDIL-TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQ  155 (415)
T ss_pred             ceEEEEecccc-ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEe
Confidence            44566888998 78999999999999999999999999999999999998888899999999999997765555556899


Q ss_pred             ecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccC
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID  188 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~  188 (530)
                      +.++|...    .+.|||+|.+|.++++++......+++...++.+.+||+.+++|||+. +++|-||||||||+.+...
T Consensus       156 m~~wFdyr----ghiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~-kl~HTDLKPENILfvss~~  230 (415)
T KOG0671|consen  156 MRDWFDYR----GHICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDL-KLTHTDLKPENILFVSSEY  230 (415)
T ss_pred             eehhhhcc----CceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhc-ceeecCCChheEEEeccce
Confidence            99999854    699999999999999999988888899999999999999999999996 9999999999999965210


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                      ..          ....+..                                                             
T Consensus       231 ~~----------~~~~k~~-------------------------------------------------------------  239 (415)
T KOG0671|consen  231 FK----------TYNPKKK-------------------------------------------------------------  239 (415)
T ss_pred             EE----------EeccCCc-------------------------------------------------------------
Confidence            00          0000000                                                             


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                              ......                 .....++|+|||.|....+.....+.|+.|+|||++++.+++.++||||
T Consensus       240 --------~~~~r~-----------------~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWS  294 (415)
T KOG0671|consen  240 --------VCFIRP-----------------LKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWS  294 (415)
T ss_pred             --------cceecc-----------------CCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCcee
Confidence                    000000                 0135699999999999888888899999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchh------cccCCchh
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR------LRFWPLNK  422 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  422 (530)
                      +||||+||.+|..+|++..      +.++|+.|.+++|+.|..+..+.+ ...+|... ++..-..      ...+...+
T Consensus       295 iGCIL~ElytG~~LFqtHe------n~EHLaMMerIlGp~P~~mi~r~~-~~Kyf~~~-rldw~e~~~~~~~k~v~~~ck  366 (415)
T KOG0671|consen  295 IGCILVELYTGETLFQTHE------NLEHLAMMERILGPIPSRMIKKTR-KEKYFRRG-RLDWPEVSSKGKSKYVFEPCK  366 (415)
T ss_pred             eeeEEEEeeccceecccCC------cHHHHHHHHHhhCCCcHHHhhhhh-hHhhhhcc-cccCccccccccchhhhcCCc
Confidence            9999999999999997655      789999999999999998876654 33344333 2221100      00111122


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .+.............+.|||++||.+||.+|+|+.|+|.||||+...
T Consensus       367 pl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~HpFF~~~~  413 (415)
T KOG0671|consen  367 PLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSHPFFARLT  413 (415)
T ss_pred             cHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcCHHhhcCC
Confidence            22222223334456799999999999999999999999999998643

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=3.4e-51  Score=409.04  Aligned_cols=253  Identities=26%  Similarity=0.433  Sum_probs=205.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|+++++||+|+||.||+|+.+.||..||+|++++..    ...+.+..|-.||...      ++|+||++|..|+ 
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~------ds~~vVKLyYsFQ-  211 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEV------DSPWVVKLYYSFQ-  211 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhc------CCCcEEEEEEEec-
Confidence            3589999999999999999999999999999999999864    3456677788888775      8899999999999 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         +..++||||||+ ||++..++..  ...|++..+++++.+++.|+..||+. |+|||||||+|+||+.         
T Consensus       212 ---D~~~LYLiMEylPGGD~mTLL~~--~~~L~e~~arfYiaE~vlAI~~iH~~-gyIHRDIKPdNlLiD~---------  276 (550)
T KOG0605|consen  212 ---DKEYLYLIMEYLPGGDMMTLLMR--KDTLTEDWARFYIAETVLAIESIHQL-GYIHRDIKPDNLLIDA---------  276 (550)
T ss_pred             ---CCCeeEEEEEecCCccHHHHHHh--cCcCchHHHHHHHHHHHHHHHHHHHc-CcccccCChhheeecC---------
Confidence               558999999999 9999999974  44599999999999999999999996 9999999999999966         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       277 --------------------------------------------------------------------------------  276 (550)
T KOG0605|consen  277 --------------------------------------------------------------------------------  276 (550)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-------------------------------------
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-------------------------------------  317 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-------------------------------------  317 (530)
                                                 .+.+||.|||++.-..                                     
T Consensus       277 ---------------------------~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (550)
T KOG0605|consen  277 ---------------------------KGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMS  329 (550)
T ss_pred             ---------------------------CCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhh
Confidence                                       3455555555552100                                     


Q ss_pred             -------------cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHH
Q 045988          318 -------------KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMEL  384 (530)
Q Consensus       318 -------------~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~  384 (530)
                                   .-..+.+|||.|+|||++.++.|+..+|+||||||+||||.|.+||.+.++      ......|++-
T Consensus       330 ~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp------~~T~rkI~nw  403 (550)
T KOG0605|consen  330 RREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETP------QETYRKIVNW  403 (550)
T ss_pred             HHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCH------HHHHHHHHHH
Confidence                         002345899999999999999999999999999999999999999976542      2222222211


Q ss_pred             hCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC--hhcHHHHHHHHhhccCcCCCCCcC---HHHH
Q 045988          385 LGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS--EKDANDMADFLVPILDFVPEKRPT---AAQC  459 (530)
Q Consensus       385 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dLl~~mL~~dP~~Rpt---a~el  459 (530)
                      -                                        ..+.++  ...+++++|||.+||+ ||++|..   +.||
T Consensus       404 r----------------------------------------~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EI  442 (550)
T KOG0605|consen  404 R----------------------------------------ETLKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEI  442 (550)
T ss_pred             h----------------------------------------hhccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHH
Confidence            0                                        011222  2356899999999999 9999985   9999


Q ss_pred             hcCCCCCCC
Q 045988          460 LTHPWINVG  468 (530)
Q Consensus       460 L~hp~f~~~  468 (530)
                      .+||||+.-
T Consensus       443 K~HPfF~~v  451 (550)
T KOG0605|consen  443 KKHPFFKGV  451 (550)
T ss_pred             hcCCccccC
Confidence            999999864

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-51  Score=394.62  Aligned_cols=260  Identities=27%  Similarity=0.462  Sum_probs=213.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|.+.++||+|+||+||+|+++.++..||||.+.+.   ....+.+..|+.||+.|      +|||||.++++++    
T Consensus        10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel------~H~nIV~l~d~~~----   79 (429)
T KOG0595|consen   10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKEL------KHPNIVRLLDCIE----   79 (429)
T ss_pred             ccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhc------CCcceeeEEEEEe----
Confidence            7899999999999999999999999999999977655   34456778999999999      7899999999999    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ..+++||||||| ||||..++....  .+++..++.++.||+.||++||++ +||||||||+||||+......       
T Consensus        80 ~~~~i~lVMEyC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~alq~L~~~-~IiHRDLKPQNiLLs~~~~~~-------  149 (429)
T KOG0595|consen   80 DDDFIYLVMEYCNGGDLSDYIRRRG--RLPEATARHFMQQLASALQFLHEN-NIIHRDLKPQNILLSTTARND-------  149 (429)
T ss_pred             cCCeEEEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCCcceEEeccCCCCC-------
Confidence            457999999999 899999997543  599999999999999999999998 999999999999996521000       


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (429)
T KOG0595|consen  150 --------------------------------------------------------------------------------  149 (429)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             ....+||+|||+|+.....  ..+.+|||.|||||++....|+.|+|+||+|+|+|+
T Consensus       150 -----------------------~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq  206 (429)
T KOG0595|consen  150 -----------------------TSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQ  206 (429)
T ss_pred             -----------------------CCceEEecccchhhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHH
Confidence                                   0146899999999876533  466799999999999999899999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|++||...+.      .+.+..+..-                                       .......+...+
T Consensus       207 ~l~g~~Pf~a~t~------~eL~~~~~k~---------------------------------------~~~~~~~~~~~s  241 (429)
T KOG0595|consen  207 CLTGKPPFDAETP------KELLLYIKKG---------------------------------------NEIVPVLPAELS  241 (429)
T ss_pred             HHhCCCCccccCH------HHHHHHHhcc---------------------------------------ccccCchhhhcc
Confidence            9999999975441      1111110000                                       000012233456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ..+.+|+...|+.||..|.+..+-+.|+++...+
T Consensus       242 ~~~~~Ll~~ll~~~~~~~~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  242 NPLRELLISLLQRNPKDRISFEDFFDHPFLAANP  275 (429)
T ss_pred             CchhhhhhHHHhcCccccCchHHhhhhhhcccCc
Confidence            6777999999999999999999999999998776

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-51  Score=381.09  Aligned_cols=253  Identities=26%  Similarity=0.411  Sum_probs=225.8

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ....+|++++.||.|+||.|.+++++.+|..||+|++++...    ..+...+|.++|+.+      .||+++++++.|.
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v------~~PFlv~l~~t~~  114 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAV------SHPFLVKLYGTFK  114 (355)
T ss_pred             cchhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhc------cCceeEEEEEeec
Confidence            456899999999999999999999999999999999887642    356678899999999      7899999999999


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          +..++||||||. ||.|+.++..  .+.+++..++.++.||+.||+|||+. +|++||+|||||||+.        
T Consensus       115 ----d~~~lymvmeyv~GGElFS~Lrk--~~rF~e~~arFYAAeivlAleylH~~-~iiYRDLKPENiLlD~--------  179 (355)
T KOG0616|consen  115 ----DNSNLYMVMEYVPGGELFSYLRK--SGRFSEPHARFYAAEIVLALEYLHSL-DIIYRDLKPENLLLDQ--------  179 (355)
T ss_pred             ----cCCeEEEEEeccCCccHHHHHHh--cCCCCchhHHHHHHHHHHHHHHHHhc-CeeeccCChHHeeecc--------
Confidence                558999999999 9999999974  34599999999999999999999996 9999999999999976        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (355)
T KOG0616|consen  180 --------------------------------------------------------------------------------  179 (355)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                                  .+.+||.|||+|+.......+.||||.|+|||++..++|+.++|+|||||++
T Consensus       180 ----------------------------~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLI  231 (355)
T KOG0616|consen  180 ----------------------------NGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLI  231 (355)
T ss_pred             ----------------------------CCcEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHH
Confidence                                        6789999999998877777788999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |||+.|.+||...++..          |                                      ..+|+..++.+|.-
T Consensus       232 YEMlaG~pPF~~~~~~~----------i--------------------------------------Y~KI~~~~v~fP~~  263 (355)
T KOG0616|consen  232 YEMLAGYPPFYDDNPIQ----------I--------------------------------------YEKILEGKVKFPSY  263 (355)
T ss_pred             HHHHcCCCCCcCCChHH----------H--------------------------------------HHHHHhCcccCCcc
Confidence            99999999996543211          1                                      35777888899999


Q ss_pred             cHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      .+++++|||.++|+.|-.+|.     ...+|..||||+.-
T Consensus       264 fs~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v  303 (355)
T KOG0616|consen  264 FSSDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGV  303 (355)
T ss_pred             cCHHHHHHHHHHHhhhhHhhhcCcCCCccccccCcccccc
Confidence            999999999999999999994     47899999999864

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-50  Score=409.74  Aligned_cols=253  Identities=27%  Similarity=0.437  Sum_probs=216.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----c--cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----Q--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ..++|.+.+.||+|+||+|++|.+..++..||+|++.+.    .  ...+.+.+|+.+++++.     .||||+++++++
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~-----~HpnI~~l~ev~   89 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLR-----SHPNIIRLLEVF   89 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhc-----cCCCEeEEEEEE
Confidence            368999999999999999999999999999999987764    1  23456678999999994     388999999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      ..    ...+|+||||| +|+|++++..  .+.+.+.+++.+|+||+.||+|||++ ||+||||||+|||++..      
T Consensus        90 ~t----~~~~~ivmEy~~gGdL~~~i~~--~g~l~E~~ar~~F~Qlisav~y~H~~-gi~HRDLK~ENilld~~------  156 (370)
T KOG0583|consen   90 AT----PTKIYIVMEYCSGGDLFDYIVN--KGRLKEDEARKYFRQLISAVAYCHSR-GIVHRDLKPENILLDGN------  156 (370)
T ss_pred             ec----CCeEEEEEEecCCccHHHHHHH--cCCCChHHHHHHHHHHHHHHHHHHhC-CEeeCCCCHHHEEecCC------
Confidence            94    46799999999 8899999986  45599999999999999999999997 99999999999999661      


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (370)
T KOG0583|consen  157 --------------------------------------------------------------------------------  156 (370)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCC-C-CCcchhH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSK-Y-STPADLW  347 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~-~-~~~~DiW  347 (530)
                                                   ..++||+|||++...   .......+||+.|+|||++.+.. | +.++|||
T Consensus       157 -----------------------------~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvW  207 (370)
T KOG0583|consen  157 -----------------------------EGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVW  207 (370)
T ss_pred             -----------------------------CCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhh
Confidence                                         167999999999866   34567889999999999999988 8 4889999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |+||+||.|++|+.||....          ...+                                      ..++....
T Consensus       208 S~GViLy~ml~G~~PF~d~~----------~~~l--------------------------------------~~ki~~~~  239 (370)
T KOG0583|consen  208 SLGVILYVLLCGRLPFDDSN----------VPNL--------------------------------------YRKIRKGE  239 (370)
T ss_pred             hhHHHHHHHHhCCCCCCCcc----------HHHH--------------------------------------HHHHhcCC
Confidence            99999999999999996321          1111                                      12244445


Q ss_pred             ccCChhc-HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          428 YDFSEKD-ANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       428 ~~~~~~~-~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      +.++... ++++++||.+||..||.+|+|+.+++.||||+.
T Consensus       240 ~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  240 FKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             ccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence            5666777 899999999999999999999999999999997

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=2.2e-49  Score=420.82  Aligned_cols=330  Identities=31%  Similarity=0.516  Sum_probs=247.4

Q ss_pred             CCCCccccccCcEee--CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCC
Q 045988           26 RRGGYHAVRMGDTFK--NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        26 ~~~~~~~~~~g~~~~--~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h  103 (530)
                      ...+++++.+|+.+.  .++|++.++||+|+||+||+|.+..+++.||||+++...........|+.++..+.+.+..+|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~  190 (467)
T PTZ00284        111 REEGHFYVVLGEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADR  190 (467)
T ss_pred             CCCCceeEecCCccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccC
Confidence            345566777887763  578999999999999999999999999999999987654445567789999999998887788


Q ss_pred             cceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEE
Q 045988          104 KCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL  183 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl  183 (530)
                      .+|++++++|..   ...++|||||+++++|.+++...  ..+++..++.|+.||+.||+|||+++|||||||||+|||+
T Consensus       191 ~~i~~i~~~~~~---~~~~~~iv~~~~g~~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl  265 (467)
T PTZ00284        191 FPLMKIQRYFQN---ETGHMCIVMPKYGPCLLDWIMKH--GPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILM  265 (467)
T ss_pred             cceeeeEEEEEc---CCceEEEEEeccCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEE
Confidence            899999999875   34689999999999999988643  4599999999999999999999974499999999999999


Q ss_pred             eeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 045988          184 MSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSV  263 (530)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (530)
                      +...... .+.                                                     .               
T Consensus       266 ~~~~~~~-~~~-----------------------------------------------------~---------------  276 (467)
T PTZ00284        266 ETSDTVV-DPV-----------------------------------------------------T---------------  276 (467)
T ss_pred             ecCCccc-ccc-----------------------------------------------------c---------------
Confidence            5521000 000                                                     0               


Q ss_pred             ccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCc
Q 045988          264 EDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTP  343 (530)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~  343 (530)
                                                     ..........+||+|||.++.........+||+.|+|||++.+..|+.+
T Consensus       277 -------------------------------~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~  325 (467)
T PTZ00284        277 -------------------------------NRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYS  325 (467)
T ss_pred             -------------------------------ccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcH
Confidence                                           0000001346999999998766556667789999999999999999999


Q ss_pred             chhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCc--ccccccccCccccchhcccCCch
Q 045988          344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRY--SRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       344 ~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      +|||||||++|||++|++||.+..      ..+.+..+...+|..|..+......  ...+|...+.+........  +.
T Consensus       326 ~DiwSlGvil~elltG~~pf~~~~------~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  397 (467)
T PTZ00284        326 TDMWSMGCIIYELYTGKLLYDTHD------NLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKH--LA  397 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHH--HH
Confidence            999999999999999999997544      5778888999999998877643321  1223333222211100000  00


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ..............+.+.|||.+||++||.+|||++|+|+||||...
T Consensus       398 ~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~  444 (467)
T PTZ00284        398 RIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYVLKY  444 (467)
T ss_pred             hhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCcccccc
Confidence            00000000001124678899999999999999999999999999874

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.2e-50  Score=409.33  Aligned_cols=254  Identities=30%  Similarity=0.481  Sum_probs=223.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      |-|++.+-||.|+.|.|-+|++..||+.+|||++.+.    ......+.+||-||+.|      .||||+++|++|+   
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi------~HpnVl~LydVwe---   82 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLI------EHPNVLRLYDVWE---   82 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHh------cCCCeeeeeeeec---
Confidence            7899999999999999999999999999999998775    23345678999999999      7888999999999   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       +..++|+|+||+ +|.|++++-.  .+++++.++.++++||+.||.|||.. +|+|||+||+|+||+.           
T Consensus        83 -~~~~lylvlEyv~gGELFdylv~--kG~l~e~eaa~ff~QIi~gv~yCH~~-~icHRDLKpENlLLd~-----------  147 (786)
T KOG0588|consen   83 -NKQHLYLVLEYVPGGELFDYLVR--KGPLPEREAAHFFRQILDGVSYCHAF-NICHRDLKPENLLLDV-----------  147 (786)
T ss_pred             -cCceEEEEEEecCCchhHHHHHh--hCCCCCHHHHHHHHHHHHHHHHHhhh-cceeccCCchhhhhhc-----------
Confidence             678999999999 9999999974  45699999999999999999999994 9999999999999966           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (786)
T KOG0588|consen  148 --------------------------------------------------------------------------------  147 (786)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCC-CCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~-~~~~DiWSlG~il  353 (530)
                                               ..++||+|||+|....  .-..+.||+|.|.|||++.|.+| +.++||||+||||
T Consensus       148 -------------------------~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVIL  202 (786)
T KOG0588|consen  148 -------------------------KNNIKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVIL  202 (786)
T ss_pred             -------------------------ccCEeeeccceeecccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHH
Confidence                                     4569999999997643  33577899999999999999998 7899999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |.||+|.+||++.+          +..+                                      +.++..+.+.+|..
T Consensus       203 fALLtG~LPFdDdN----------ir~L--------------------------------------LlKV~~G~f~MPs~  234 (786)
T KOG0588|consen  203 FALLTGKLPFDDDN----------IRVL--------------------------------------LLKVQRGVFEMPSN  234 (786)
T ss_pred             HHHHhCCCCCCCcc----------HHHH--------------------------------------HHHHHcCcccCCCc
Confidence            99999999996322          2211                                      34555677889999


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLL  472 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~  472 (530)
                      +++++.+||++||..||.+|+|.+||++|||+.....+.
T Consensus       235 Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~~~~~  273 (786)
T KOG0588|consen  235 ISSEAQDLLRRMLDVDPSTRITTEEILKHPFLSGYTSLP  273 (786)
T ss_pred             CCHHHHHHHHHHhccCccccccHHHHhhCchhhcCCCCC
Confidence            999999999999999999999999999999998776543

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-51  Score=371.88  Aligned_cols=256  Identities=28%  Similarity=0.391  Sum_probs=214.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+.|++.+.||+|.|+.||+|.++.+|+.||+|+++..   ....+.+.+|++|-+.|      +|||||++.+.+.   
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~L------qHP~IvrL~~ti~---   80 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL------QHPNIVRLHDSIQ---   80 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhc------CCCcEeehhhhhc---
Confidence            57899999999999999999999999999999987653   34578889999999999      8899999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ...+.|||+|++ |++|..-|-....  +++..+..+++||+.||.|+|.+ ||||||+||+|+|+.++..        
T Consensus        81 -~~~~~ylvFe~m~G~dl~~eIV~R~~--ySEa~aSH~~rQiLeal~yCH~n-~IvHRDvkP~nllLASK~~--------  148 (355)
T KOG0033|consen   81 -EESFHYLVFDLVTGGELFEDIVAREF--YSEADASHCIQQILEALAYCHSN-GIVHRDLKPENLLLASKAK--------  148 (355)
T ss_pred             -ccceeEEEEecccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc-CceeccCChhheeeeeccC--------
Confidence             457999999999 8899887754432  88999999999999999999998 9999999999999955311        


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (355)
T KOG0033|consen  149 --------------------------------------------------------------------------------  148 (355)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                               ..-+||+|||+|....  .....++|||.|||||++...+|+..+|||+.|||||
T Consensus       149 -------------------------~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLf  203 (355)
T KOG0033|consen  149 -------------------------GAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILY  203 (355)
T ss_pred             -------------------------CCceeecccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHH
Confidence                                     2348999999997654  2356779999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc----C
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD----F  430 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  430 (530)
                      -|+.|++||.+.+      .......|+                                          ...+.    .
T Consensus       204 iLL~G~~PF~~~~------~~rlye~I~------------------------------------------~g~yd~~~~~  235 (355)
T KOG0033|consen  204 ILLVGYPPFWDED------QHRLYEQIK------------------------------------------AGAYDYPSPE  235 (355)
T ss_pred             HHHhCCCCCCCcc------HHHHHHHHh------------------------------------------ccccCCCCcc
Confidence            9999999996532      122222222                                          12222    2


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ++.+++++++||++||..||.+|+|+.|+|+|||+.+..+
T Consensus       236 w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~r~~  275 (355)
T KOG0033|consen  236 WDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWICNRER  275 (355)
T ss_pred             cCcCCHHHHHHHHHHhccChhhhccHHHHhCCchhcchHH
Confidence            3467889999999999999999999999999999987543

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=3.3e-49  Score=394.50  Aligned_cols=251  Identities=28%  Similarity=0.435  Sum_probs=215.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|.+.+.||+|+||.||+|+.+.+.+.||||.+.+..   .....+.+|++|++.|      +|||||.++++|+    
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~l------kHpniv~m~esfE----   71 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSL------KHPNIVEMLESFE----   71 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhc------CCcchhhHHHhhc----
Confidence            57999999999999999999999999999999887643   3345678999999999      7888999999999    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +..++|+|.|||.|+|+.++..  .+.++++.++.|++||+.||.|||++ +|+|||+||.|||+..             
T Consensus        72 t~~~~~vVte~a~g~L~~il~~--d~~lpEe~v~~~a~~LVsaL~yLhs~-rilhrd~kPqniLl~~-------------  135 (808)
T KOG0597|consen   72 TSAHLWVVTEYAVGDLFTILEQ--DGKLPEEQVRAIAYDLVSALYYLHSN-RILHRDMKPQNILLEK-------------  135 (808)
T ss_pred             ccceEEEEehhhhhhHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHhc-CcccccCCcceeeecC-------------
Confidence            5689999999997799999974  45599999999999999999999997 9999999999999965             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (808)
T KOG0597|consen  136 --------------------------------------------------------------------------------  135 (808)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             .+.+|+||||+|+....   ..+...|||.|||||++.+.+|+..+|+||||||+||
T Consensus       136 -----------------------~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE  192 (808)
T KOG0597|consen  136 -----------------------GGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYE  192 (808)
T ss_pred             -----------------------CCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHH
Confidence                                   56799999999976432   2466679999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|++||...+         ....+                                       ..|..+....+...+
T Consensus       193 ~~~G~PPF~a~s---------i~~Lv---------------------------------------~~I~~d~v~~p~~~S  224 (808)
T KOG0597|consen  193 LYVGQPPFYARS---------ITQLV---------------------------------------KSILKDPVKPPSTAS  224 (808)
T ss_pred             HhcCCCCchHHH---------HHHHH---------------------------------------HHHhcCCCCCccccc
Confidence            999999994221         11111                                       222333344556778


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ..+.+||..+|..||.+|+|..++|.|||++..-
T Consensus       225 ~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~~~  258 (808)
T KOG0597|consen  225 SSFVNFLQGLLIKDPAQRLTWTDLLGHPFWKGKI  258 (808)
T ss_pred             HHHHHHHHHHhhcChhhcccHHHHhcChHHhhhh
Confidence            9999999999999999999999999999998654

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-48  Score=398.76  Aligned_cols=259  Identities=24%  Similarity=0.374  Sum_probs=222.7

Q ss_pred             cccCc-EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCccee
Q 045988           33 VRMGD-TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVV  107 (530)
Q Consensus        33 ~~~g~-~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv  107 (530)
                      ...+. .+...+|.++++||+|+||+|++|..+.+++.||||++++..    ...+..+.|.+|+....     .||.++
T Consensus       358 ~~~~~~~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~-----~HPFL~  432 (694)
T KOG0694|consen  358 FPPRRGPLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELAN-----RHPFLV  432 (694)
T ss_pred             CCCCCCcccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhc-----cCCeEe
Confidence            34444 666789999999999999999999999999999999999863    45778889999998885     799999


Q ss_pred             EecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          108 KLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       108 ~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      .++..|+    +..++|+||||+ ||++.   .....+.+++..++.|+..|+.||+|||++ |||+||||.+||||+. 
T Consensus       433 ~L~~~fQ----T~~~l~fvmey~~Ggdm~---~~~~~~~F~e~rarfyaAev~l~L~fLH~~-~IIYRDlKLdNiLLD~-  503 (694)
T KOG0694|consen  433 NLFSCFQ----TKEHLFFVMEYVAGGDLM---HHIHTDVFSEPRARFYAAEVVLGLQFLHEN-GIIYRDLKLDNLLLDT-  503 (694)
T ss_pred             ecccccc----cCCeEEEEEEecCCCcEE---EEEecccccHHHHHHHHHHHHHHHHHHHhc-CceeeecchhheEEcc-
Confidence            9999999    668999999999 77732   222345699999999999999999999998 9999999999999976 


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       504 --------------------------------------------------------------------------------  503 (694)
T KOG0694|consen  504 --------------------------------------------------------------------------------  503 (694)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCCCCCc
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSKYSTP  343 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~  343 (530)
                                                         ++.+||+|||+++..   ....++++|||.|||||++.+..|+.+
T Consensus       504 -----------------------------------eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~a  548 (694)
T KOG0694|consen  504 -----------------------------------EGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRA  548 (694)
T ss_pred             -----------------------------------cCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccch
Confidence                                               688999999999752   344677899999999999999999999


Q ss_pred             chhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhh
Q 045988          344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       344 ~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      +|+|||||+|||||.|.+||++.+      +.+..                                          ..|
T Consensus       549 VDWW~lGVLlyeML~Gq~PF~gdd------Eee~F------------------------------------------dsI  580 (694)
T KOG0694|consen  549 VDWWGLGVLLYEMLVGESPFPGDD------EEEVF------------------------------------------DSI  580 (694)
T ss_pred             hhHHHHHHHHHHHHcCCCCCCCCC------HHHHH------------------------------------------HHH
Confidence            999999999999999999998765      22222                                          334


Q ss_pred             hhhhccCChhcHHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       424 ~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      +...+.+|..++.++.++|+++|..||++|..     +.+|.+||||+.-
T Consensus       581 ~~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i  630 (694)
T KOG0694|consen  581 VNDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSI  630 (694)
T ss_pred             hcCCCCCCCcccHHHHHHHHHHhccCcccccCCCCCCchhhhhCCccccC
Confidence            44555677788999999999999999999986     5899999999864

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=100.00  E-value=3.1e-49  Score=391.01  Aligned_cols=313  Identities=34%  Similarity=0.590  Sum_probs=269.4

Q ss_pred             CCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCccee
Q 045988           28 GGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVV  107 (530)
Q Consensus        28 ~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv  107 (530)
                      .||+-|+||+.| .++|.|....|+|-|++|.+|.+...|..|||||+..+......-++|++||++|....+.+.-|++
T Consensus       419 EGYYrv~igE~L-D~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hcl  497 (752)
T KOG0670|consen  419 EGYYRVRIGELL-DSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCL  497 (752)
T ss_pred             cceEEEehhhhh-cceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHH
Confidence            469999999999 8899999999999999999999999999999999999888888889999999999988777778899


Q ss_pred             EecceeeecCCCCcEEEEEEeccCcCHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          108 KLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYAD-YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       108 ~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~-~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      +++..|.+.    +++|||+|.+..+|.++++... .-+|....++.|+.||+.||..|-. |||+|.||||+|||+...
T Consensus       498 rl~r~F~hk----nHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~-c~vlHaDIKPDNiLVNE~  572 (752)
T KOG0670|consen  498 RLFRHFKHK----NHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKK-CGVLHADIKPDNILVNES  572 (752)
T ss_pred             HHHHHhhhc----ceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHh-cCeeecccCccceEeccC
Confidence            999999954    8999999999999999997654 3469999999999999999999997 799999999999999541


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       573 --------------------------------------------------------------------------------  572 (752)
T KOG0670|consen  573 --------------------------------------------------------------------------------  572 (752)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-cccCCCCCCCCccCChhhcCCCCCCcch
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-KQFTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-~~~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                         ...+||||||.|.... ...+.+.-+..|+|||+++|.+|+...|
T Consensus       573 -----------------------------------k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD  617 (752)
T KOG0670|consen  573 -----------------------------------KNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPID  617 (752)
T ss_pred             -----------------------------------cceeeeccCccccccccccccHHHHHHhccCcceeecCcccCCcc
Confidence                                               4569999999997754 4567778899999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhc----------
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL----------  415 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------  415 (530)
                      +||+||+||||.||+..|+|.+      +.+.|..++.+-|.+|.++...+.+...-|+...++-++.--          
T Consensus       618 ~WSvgctLYElYtGkIlFpG~T------NN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~v  691 (752)
T KOG0670|consen  618 TWSVGCTLYELYTGKILFPGRT------NNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTV  691 (752)
T ss_pred             ceeeceeeEEeeccceecCCCC------cHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEE
Confidence            9999999999999999999887      788999999999999999999999988888887766444211          


Q ss_pred             --ccCCch---hhhhhhccCChh---cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          416 --RFWPLN---KVLIEKYDFSEK---DANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       416 --~~~~~~---~~~~~~~~~~~~---~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                        ...|..   ..+.....++.+   .-.++.+||.+||..||++|+|..|+|+||||+.
T Consensus       692 m~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  692 MVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             ecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcCCcccC
Confidence              112211   222222123332   3457889999999999999999999999999975

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-49  Score=394.73  Aligned_cols=252  Identities=28%  Similarity=0.452  Sum_probs=214.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ..|...++||+|+.|.||.|+...+++.||||.+.... ...+-+++|+.+|+.+      .|+|||.+++.|..    +
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~------~H~NiVnfl~Sylv----~  342 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDL------HHPNIVNFLDSYLV----G  342 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhc------cchHHHHHHHHhcc----c
Confidence            68999999999999999999999999999999877653 4466778999999999      78889999999994    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      +.+|+||||| ||+|.+++....   ++|.++..|++.+|.||+|||.+ ||||||||-+|||+..              
T Consensus       343 deLWVVMEym~ggsLTDvVt~~~---~~E~qIA~Icre~l~aL~fLH~~-gIiHrDIKSDnILL~~--------------  404 (550)
T KOG0578|consen  343 DELWVVMEYMEGGSLTDVVTKTR---MTEGQIAAICREILQGLKFLHAR-GIIHRDIKSDNILLTM--------------  404 (550)
T ss_pred             ceeEEEEeecCCCchhhhhhccc---ccHHHHHHHHHHHHHHHHHHHhc-ceeeeccccceeEecc--------------
Confidence            7899999999 999999886433   99999999999999999999998 9999999999999965              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       405 --------------------------------------------------------------------------------  404 (550)
T KOG0578|consen  405 --------------------------------------------------------------------------------  404 (550)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            ++.+||+|||++.....   ...+.+|||+|||||++..+.|++++||||||+|++||
T Consensus       405 ----------------------~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEM  462 (550)
T KOG0578|consen  405 ----------------------DGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEM  462 (550)
T ss_pred             ----------------------CCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHH
Confidence                                  57799999999976433   45778999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      +-|++||--         +.-+..++.+...-                                    ...+..+...++
T Consensus       463 veGEPPYln---------E~PlrAlyLIa~ng------------------------------------~P~lk~~~klS~  497 (550)
T KOG0578|consen  463 VEGEPPYLN---------ENPLRALYLIATNG------------------------------------TPKLKNPEKLSP  497 (550)
T ss_pred             hcCCCCccC---------CChHHHHHHHhhcC------------------------------------CCCcCCccccCH
Confidence            999999931         22233232221111                                    111234556789


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .++|||.+||+.||.+|++|.|||+||||+..
T Consensus       498 ~~kdFL~~cL~~dv~~RasA~eLL~HpFl~~a  529 (550)
T KOG0578|consen  498 ELKDFLDRCLVVDVEQRASAKELLEHPFLKMA  529 (550)
T ss_pred             HHHHHHHHHhhcchhcCCCHHHHhcChhhhhc
Confidence            99999999999999999999999999999654

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.4e-50  Score=371.55  Aligned_cols=242  Identities=25%  Similarity=0.392  Sum_probs=201.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecc---cccchHHHHHHHHHHHHhhcCCCCCCcceeEecc-eeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKS---AQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD-HFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~---~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~-~~~~~  116 (530)
                      ...|+|+++||+|+||.||++++..+|+.||.|-++-   +.........|+.+|++|      +|||||++++ .|.. 
T Consensus        18 l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL------~HpNIVqYy~~~f~~-   90 (375)
T KOG0591|consen   18 LADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQL------NHPNIVQYYAHSFIE-   90 (375)
T ss_pred             HHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhc------CCchHHHHHHHhhhc-
Confidence            4679999999999999999999999999999997662   234467788999999999      8899999998 4543 


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHh--hCC--ceeccCCCCcEEEeeccCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADY--RGVPLHMVKEICFHILVGLDHLHR--ELS--IIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~--~~l~~~~~~~i~~qll~aL~~LH~--~~g--IvHrDIKp~NILl~~~~~~  189 (530)
                        +...++|||||| +|+|...|+..+.  +.+++.+++.++.||+.||..||+  . .  |+||||||.||+|+.    
T Consensus        91 --~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~-r~~VmHRDIKPaNIFl~~----  163 (375)
T KOG0591|consen   91 --DNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIP-RGTVMHRDIKPANIFLTA----  163 (375)
T ss_pred             --cchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcccc-ccceeeccCcchheEEcC----
Confidence              345699999999 9999999986544  349999999999999999999998  3 4  999999999999965    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (375)
T KOG0591|consen  164 --------------------------------------------------------------------------------  163 (375)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                      .+.|||+|||+++.....   ..+.+|||+||+||++.+.+|++++||
T Consensus       164 --------------------------------~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDi  211 (375)
T KOG0591|consen  164 --------------------------------NGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDI  211 (375)
T ss_pred             --------------------------------CCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhH
Confidence                                            567999999999876544   457899999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|||+.-.+||.+.+       ...+..                                         +|...
T Consensus       212 WslGCllyEMcaL~~PF~g~n-------~~~L~~-----------------------------------------KI~qg  243 (375)
T KOG0591|consen  212 WSLGCLLYEMCALQSPFYGDN-------LLSLCK-----------------------------------------KIEQG  243 (375)
T ss_pred             HHHHHHHHHHHhcCCCccccc-------HHHHHH-----------------------------------------HHHcC
Confidence            999999999999999997542       111211                                         11111


Q ss_pred             hc-cCC-hhcHHHHHHHHhhccCcCCCCCcCH
Q 045988          427 KY-DFS-EKDANDMADFLVPILDFVPEKRPTA  456 (530)
Q Consensus       427 ~~-~~~-~~~~~~~~dLl~~mL~~dP~~Rpta  456 (530)
                      .+ .+| .-.|.++..||.-|+..||+.||+.
T Consensus       244 d~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  244 DYPPLPDEHYSTDLRELINMCIAVDPEQRPDT  275 (375)
T ss_pred             CCCCCcHHHhhhHHHHHHHHHccCCcccCCCc
Confidence            11 133 4568899999999999999999985

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=3.4e-47  Score=378.77  Aligned_cols=279  Identities=31%  Similarity=0.495  Sum_probs=221.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|++.++||.|+||+||+|++..++..||+|+++...  .....+.+|+.+++++      +||||+++++++.    
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~----   73 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNL------KHANIVTLHDIIH----   73 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhC------CCCCEeeEEEEEc----
Confidence            578999999999999999999999999999999886532  2345677899999999      7888999999988    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      .....++||||+.++|.+++.... ..+++..++.++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        74 ~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~dlkp~Nil~~~-------------  138 (288)
T cd07871          74 TERCLTLVFEYLDSDLKQYLDNCG-NLMSMHNVKIFMFQLLRGLSYCHKR-KILHRDLKPQNLLINE-------------  138 (288)
T ss_pred             CCCeEEEEEeCCCcCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEECC-------------
Confidence            457899999999889999886432 3478999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (288)
T cd07871         139 --------------------------------------------------------------------------------  138 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                             ++.+||+|||++.....   ......||+.|+|||++.+ ..++.++|||||||++|
T Consensus       139 -----------------------~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~  195 (288)
T cd07871         139 -----------------------KGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILY  195 (288)
T ss_pred             -----------------------CCCEEECcCcceeeccCCCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHH
Confidence                                   45699999999865322   2344578999999999876 46899999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||.+.+      ....+..+...++.++...+........+..-.  +...   .   ...    ........
T Consensus       196 ~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~---~~~----~~~~~~~~  257 (288)
T cd07871         196 EMATGRPMFPGST------VKEELHLIFRLLGTPTEETWPGITSNEEFRSYL--FPQY---R---AQP----LINHAPRL  257 (288)
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHHHhCCCChHHhhccccchhhhccc--cCcc---C---CCc----hHHhCCCC
Confidence            9999999997543      567788888889988887765432221111100  0000   0   000    00112245


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      +.++.+||.+||++||.+|||++|+|+||||
T Consensus       258 ~~~~~dll~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         258 DTDGIDLLSSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             CHHHHHHHHHhcCcCcccCCCHHHHhcCCCC
Confidence            6789999999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-48  Score=383.92  Aligned_cols=253  Identities=26%  Similarity=0.431  Sum_probs=209.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---------------cchHHHHHHHHHHHHhhcCCCCCCcc
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---------------HYTEAALDEIKILKQIAEGDPDDKKC  105 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---------------~~~~~~~~Ei~il~~l~~~~~~~h~~  105 (530)
                      .++|++++.||+|.||.|-+|++..+++.||||++.+..               ...+.+.+||.||++|      .|||
T Consensus        96 lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl------~H~n  169 (576)
T KOG0585|consen   96 LNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKL------HHPN  169 (576)
T ss_pred             hhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhc------CCcC
Confidence            589999999999999999999999999999999987542               1236889999999999      7899


Q ss_pred             eeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCC-CCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEE
Q 045988          106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRG-VPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL  183 (530)
Q Consensus       106 Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~-l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl  183 (530)
                      ||+++++..++  ....+|||+||| .|.+...   ..... +++.+++.|++.++.||+|||.+ |||||||||+|+||
T Consensus       170 VV~LiEvLDDP--~s~~~YlVley~s~G~v~w~---p~d~~els~~~Ar~ylrDvv~GLEYLH~Q-giiHRDIKPsNLLl  243 (576)
T KOG0585|consen  170 VVKLIEVLDDP--ESDKLYLVLEYCSKGEVKWC---PPDKPELSEQQARKYLRDVVLGLEYLHYQ-GIIHRDIKPSNLLL  243 (576)
T ss_pred             eeEEEEeecCc--ccCceEEEEEeccCCccccC---CCCcccccHHHHHHHHHHHHHHHHHHHhc-CeeccccchhheEE
Confidence            99999998876  678999999999 6654432   22334 89999999999999999999998 99999999999999


Q ss_pred             eeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 045988          184 MSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSV  263 (530)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (530)
                      +.                                                                              
T Consensus       244 ~~------------------------------------------------------------------------------  245 (576)
T KOG0585|consen  244 SS------------------------------------------------------------------------------  245 (576)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            66                                                                              


Q ss_pred             ccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--------cccCCCCCCCCccCChhh
Q 045988          264 EDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--------KQFTNDIQTRQYRCPEVL  335 (530)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--------~~~~~~~gt~~y~aPE~l  335 (530)
                                                            ++.|||+|||.+....        ......+|||.|+|||++
T Consensus       246 --------------------------------------~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c  287 (576)
T KOG0585|consen  246 --------------------------------------DGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELC  287 (576)
T ss_pred             --------------------------------------CCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhh
Confidence                                                  6789999999997542        123446899999999999


Q ss_pred             cCC---C-CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcccc
Q 045988          336 LGS---K-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH  411 (530)
Q Consensus       336 ~~~---~-~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  411 (530)
                      .+.   . .+.+.|||||||+||+|+.|+.||-+..         .++.                               
T Consensus       288 ~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~---------~~~l-------------------------------  327 (576)
T KOG0585|consen  288 SGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDF---------ELEL-------------------------------  327 (576)
T ss_pred             cCCCCccccchhhhhhhhhhhHHHhhhccCCcccch---------HHHH-------------------------------
Confidence            873   2 3688999999999999999999995322         1111                               


Q ss_pred             chhcccCCchhhhhhhccCChh--cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          412 IRRLRFWPLNKVLIEKYDFSEK--DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                              ..+|....+.++..  +..+++|||.+||+.||.+|++..+|..|||....-
T Consensus       328 --------~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~g  379 (576)
T KOG0585|consen  328 --------FDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRDG  379 (576)
T ss_pred             --------HHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheecceeccCC
Confidence                    23334444444443  578999999999999999999999999999998763

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-47  Score=373.62  Aligned_cols=263  Identities=29%  Similarity=0.416  Sum_probs=218.1

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ..+.|++.++||.|..++||+|+.+.++..||||++.....  ....+.+|+..|+.+      +||||++++..|.   
T Consensus        24 n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~------~HPNIv~~~~sFv---   94 (516)
T KOG0582|consen   24 NAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLI------DHPNIVTYHCSFV---   94 (516)
T ss_pred             CccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhc------CCCCcceEEEEEE---
Confidence            46789999999999999999999999999999999887643  346788999999999      8999999999999   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .+..+|+||+|| +|+++++++.....++.|..+..|+++++.||.|||.+ |.||||||+.||||+.           
T Consensus        95 -v~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~-G~IHRdvKAgnILi~~-----------  161 (516)
T KOG0582|consen   95 -VDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN-GHIHRDVKAGNILIDS-----------  161 (516)
T ss_pred             -ecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc-CceecccccccEEEcC-----------
Confidence             458999999999 99999999988888899999999999999999999998 9999999999999966           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (516)
T KOG0582|consen  162 --------------------------------------------------------------------------------  161 (516)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-------ccCCCCCCCCccCChhhcC--CCCCCcchhH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-------QFTNDIQTRQYRCPEVLLG--SKYSTPADLW  347 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-------~~~~~~gt~~y~aPE~l~~--~~~~~~~DiW  347 (530)
                                               ++.|||+|||.+.....       .+...+||++|||||++..  ..|+.|+|||
T Consensus       162 -------------------------dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIw  216 (516)
T KOG0582|consen  162 -------------------------DGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIW  216 (516)
T ss_pred             -------------------------CCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhh
Confidence                                     78899999998743211       1266799999999999764  3599999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHH-HHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLA-LMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~-~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||++..||.+|..||...         ..+. .++.+-|.+|.-.. ..                             .
T Consensus       217 SfGITA~ELA~G~aPf~k~---------pPmkvLl~tLqn~pp~~~t-~~-----------------------------~  257 (516)
T KOG0582|consen  217 SFGITACELAHGHAPFSKY---------PPMKVLLLTLQNDPPTLLT-SG-----------------------------L  257 (516)
T ss_pred             hhhHHHHHHhcCCCCcccC---------ChHHHHHHHhcCCCCCccc-cc-----------------------------C
Confidence            9999999999999999632         2233 33444444442210 00                             0


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ..+.....+..++.+|..||+.||.+||||+++|+|+||+..
T Consensus       258 ~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk~~  299 (516)
T KOG0582|consen  258 DKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFKKA  299 (516)
T ss_pred             ChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHhhc
Confidence            011112335689999999999999999999999999999864

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-48  Score=360.16  Aligned_cols=300  Identities=25%  Similarity=0.350  Sum_probs=243.3

Q ss_pred             CCCEEEE-EEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQ-SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~-~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|.+- ++||-|-.|.|-.|.++.|++.||+|++...    .+..+|+++.-..+     .|||||.++++|......
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds----~KARrEVeLHw~~s-----~h~~iV~IidVyeNs~~~  130 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS----PKARREVELHWMAS-----GHPHIVSIIDVYENSYQG  130 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC----HHHHhHhhhhhhhc-----CCCceEEeehhhhhhccC
Confidence            4677774 6799999999999999999999999998774    45778998876664     899999999999987767


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ...+.+|||.| ||.|+..|+.+....+++.++..|++||+.|+.|||+. +|.||||||+|+|......          
T Consensus       131 rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~-nIAHRDlKpENLLyt~t~~----------  199 (400)
T KOG0604|consen  131 RKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSM-NIAHRDLKPENLLYTTTSP----------  199 (400)
T ss_pred             ceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhc-chhhccCChhheeeecCCC----------
Confidence            78899999999 99999999988888899999999999999999999995 9999999999999965211          


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       200 --------------------------------------------------------------------------------  199 (400)
T KOG0604|consen  200 --------------------------------------------------------------------------------  199 (400)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                             +-.+||+|||+|+...  ....+.+-||+|.|||++....|+...|+||+||++|-|
T Consensus       200 -----------------------na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIl  256 (400)
T KOG0604|consen  200 -----------------------NAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYIL  256 (400)
T ss_pred             -----------------------CcceEecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHh
Confidence                                   3468999999998765  445677889999999999988899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh----
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE----  432 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  432 (530)
                      |+|.+||........  ...                                          ...+|....+.|+.    
T Consensus       257 LCGyPPFYS~hg~ai--spg------------------------------------------Mk~rI~~gqy~FP~pEWs  292 (400)
T KOG0604|consen  257 LCGYPPFYSNHGLAI--SPG------------------------------------------MKRRIRTGQYEFPEPEWS  292 (400)
T ss_pred             hcCCCcccccCCccC--Chh------------------------------------------HHhHhhccCccCCChhHh
Confidence            999999964432111  111                                          12344445555543    


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCCCCCcccCCCCCCCCCccccccchhhHHHHHHHHhcccccc
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAID  512 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (530)
                      .+|.+++|+|+++|..+|.+|.|+.|++.|||++..+...      ..+..+...+.+......+.+|+|...+.++.++
T Consensus       293 ~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~~~~vp------~tpl~t~~~l~~a~e~w~dvqeem~~~lA~mrv~  366 (400)
T KOG0604|consen  293 CVSEAAKDLIRKLLKTEPTERLTIEEVMDHPWINQYEAVP------QTPLSTSRMLKEAVEAWDDVQEEMTETLATMRVD  366 (400)
T ss_pred             HHHHHHHHHHHHHhcCCchhheeHHHhhcCchhcccccCC------CCCchhhhhcchhhhhhHHHHHHHHHHHHhcccC
Confidence            5688999999999999999999999999999999776532      1122233344444555777888898888888776


Q ss_pred             C
Q 045988          513 G  513 (530)
Q Consensus       513 ~  513 (530)
                      .
T Consensus       367 ~  367 (400)
T KOG0604|consen  367 P  367 (400)
T ss_pred             c
Confidence            5

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.8e-49  Score=361.23  Aligned_cols=250  Identities=27%  Similarity=0.449  Sum_probs=209.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---------cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      .+|...+.||.|..++|-+|.++.+|+.+|+|++....         ...+...+|+.||+++.     .||+|+++.|+
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~-----GHP~II~l~D~   91 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVM-----GHPYIIDLQDV   91 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhc-----CCCcEEEeeee
Confidence            57888999999999999999999999999999876431         22455678999999997     89999999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      |+    ....+++|+|.| .|.|++++...-.  +++...+.||+||+.|+.|||.+ +||||||||+|||+++      
T Consensus        92 ye----s~sF~FlVFdl~prGELFDyLts~Vt--lSEK~tR~iMrqlfegVeylHa~-~IVHRDLKpENILldd------  158 (411)
T KOG0599|consen   92 YE----SDAFVFLVFDLMPRGELFDYLTSKVT--LSEKETRRIMRQLFEGVEYLHAR-NIVHRDLKPENILLDD------  158 (411)
T ss_pred             cc----CcchhhhhhhhcccchHHHHhhhhee--ecHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhheeecc------
Confidence            99    557999999999 9999999975444  99999999999999999999997 9999999999999976      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (411)
T KOG0599|consen  159 --------------------------------------------------------------------------------  158 (411)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcC------CCCCCc
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLG------SKYSTP  343 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~------~~~~~~  343 (530)
                                                    +.+++|.|||+|+...  +.....+|||+|.|||.+..      ..|+..
T Consensus       159 ------------------------------n~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~E  208 (411)
T KOG0599|consen  159 ------------------------------NMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKE  208 (411)
T ss_pred             ------------------------------ccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccch
Confidence                                          4579999999998764  44678899999999999863      348999


Q ss_pred             chhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhh
Q 045988          344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       344 ~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      +|+||+|||+|.|+.|++||-         ...++-.                                       +..+
T Consensus       209 VD~Wa~GVImyTLLaGcpPFw---------HRkQmlM---------------------------------------LR~I  240 (411)
T KOG0599|consen  209 VDEWACGVIMYTLLAGCPPFW---------HRKQMLM---------------------------------------LRMI  240 (411)
T ss_pred             hhHHHHHHHHHHHHcCCCchh---------HHHHHHH---------------------------------------HHHH
Confidence            999999999999999999993         1112111                                       1222


Q ss_pred             hhhhccC----ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          424 LIEKYDF----SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       424 ~~~~~~~----~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      +..++.|    +.+++...+|||.+||+.||.+|+|++|+|+||||..
T Consensus       241 meGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaHpff~q  288 (411)
T KOG0599|consen  241 MEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAHPFFIQ  288 (411)
T ss_pred             HhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcChHHHH
Confidence            2223322    3456788999999999999999999999999999953

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=4.4e-48  Score=361.86  Aligned_cols=303  Identities=29%  Similarity=0.425  Sum_probs=236.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCC----eEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTS----HYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~----~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ..|++++.||+|+||.||+|..+.++    +.||||.++..   ........||+.+++.|      .||||+.+..+|.
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl------~h~nvi~Lv~Vfl   97 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLREL------KHPNVISLVKVFL   97 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHh------cCCcchhHHHHHh
Confidence            57999999999999999999655543    47999988765   34567889999999999      7888999999998


Q ss_pred             ecCCCCcEEEEEEeccCcCHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          115 HSGPNGQHVCMVFEYLGENLLTLIKYADY---RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~~~~L~~~i~~~~~---~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      ..   +..++|++||+..+|..+|+.+..   +.++...++.|+.||+.|+.|||++ -|+||||||.|||+.....   
T Consensus        98 ~~---d~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N-WvlHRDLKPaNIlvmgdgp---  170 (438)
T KOG0666|consen   98 SH---DKKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN-WVLHRDLKPANILVMGDGP---  170 (438)
T ss_pred             cc---CceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh-heeeccCCcceEEEeccCC---
Confidence            52   578999999999999999987543   3489999999999999999999998 8999999999999966211   


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (438)
T KOG0666|consen  171 --------------------------------------------------------------------------------  170 (438)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc------CCCCCCCCccCChhhcCCC-CCCcc
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF------TNDIQTRQYRCPEVLLGSK-YSTPA  344 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~------~~~~gt~~y~aPE~l~~~~-~~~~~  344 (530)
                                                   ..+.|||+|||+++......      ...+-|.||+|||+++|.. |+.++
T Consensus       171 -----------------------------erG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~Ai  221 (438)
T KOG0666|consen  171 -----------------------------ERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAI  221 (438)
T ss_pred             -----------------------------ccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchh
Confidence                                         14789999999998765442      3346699999999999865 99999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCC---CCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCch
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNY---DRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~---~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      ||||+|||+.||++-.+.|.+....-.   .-..+++.+|++++|.+..+.|.......++.....+++....      .
T Consensus       222 DvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~------~  295 (438)
T KOG0666|consen  222 DVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYY------D  295 (438)
T ss_pred             hhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhc------C
Confidence            999999999999999999987543211   2257899999999999988877655444333222222211100      0


Q ss_pred             hh-hhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCC
Q 045988          422 KV-LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLL  472 (530)
Q Consensus       422 ~~-~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~  472 (530)
                      .. +..-+.....-++...+||.+||++||.+|+|+.++|+|+||.+.+.+.
T Consensus       296 n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~lpp  347 (438)
T KOG0666|consen  296 NVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDPLPP  347 (438)
T ss_pred             cchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhcccccccCCCCC
Confidence            00 1111111222345588999999999999999999999999999987653

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=2.4e-46  Score=384.49  Aligned_cols=307  Identities=29%  Similarity=0.443  Sum_probs=227.7

Q ss_pred             CCccccccCcEe--eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCC
Q 045988           28 GGYHAVRMGDTF--KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        28 ~~~~~~~~g~~~--~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      ++|+++.+|+.-  ..++|++.+.||+|+||.||+|.+..+|+.||+|++...   ......+.+|+.+++.+      +
T Consensus         5 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~   78 (359)
T cd07876           5 SQFYSVQVADSTFTVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCV------N   78 (359)
T ss_pred             CCcceecccchhhhhhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhC------C
Confidence            457888888731  258999999999999999999999999999999988643   23345677899999998      7


Q ss_pred             CcceeEecceeeecCC--CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          103 KKCVVKLLDHFKHSGP--NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~~--~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                      ||||++++++|.....  ....+|+||||++++|...+.    ..+++..+..++.||+.||+|||++ ||+||||||+|
T Consensus        79 h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~-~ivHrDlkp~N  153 (359)
T cd07876          79 HKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIH----MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSN  153 (359)
T ss_pred             CCCEeeeeeeeccCCCccccceeEEEEeCCCcCHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHH
Confidence            8889999999875321  224689999999888888764    2388999999999999999999997 99999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      ||++.                                                                           
T Consensus       154 Il~~~---------------------------------------------------------------------------  158 (359)
T cd07876         154 IVVKS---------------------------------------------------------------------------  158 (359)
T ss_pred             EEECC---------------------------------------------------------------------------
Confidence            99954                                                                           


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCC
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~  338 (530)
                                                               ++.++|+|||++.....  ......||+.|+|||++.+.
T Consensus       159 -----------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~  197 (359)
T cd07876         159 -----------------------------------------DCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGM  197 (359)
T ss_pred             -----------------------------------------CCCEEEecCCCccccccCccCCCCcccCCCCCchhccCC
Confidence                                                     46799999999965322  23456789999999999998


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc-cccccccCccccchhccc
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS-RDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  417 (530)
                      .++.++|||||||++|+|++|.+||.+..      ....+..+...+|.++..+....... ..+...............
T Consensus       198 ~~~~~~DiwSlG~il~el~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (359)
T cd07876         198 GYKENVDIWSVGCIMGELVKGSVIFQGTD------HIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEEL  271 (359)
T ss_pred             CCCcchhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhh
Confidence            99999999999999999999999997543      45667777777777665443211100 000000000000000000


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ++. -............++.+++||.+||++||.+|||+.|+|+||||+..
T Consensus       272 ~~~-~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  321 (359)
T cd07876         272 FPD-WIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYITVW  321 (359)
T ss_pred             ccc-cccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCchhhhh
Confidence            000 00000001122345778999999999999999999999999999863

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.8e-46  Score=388.65  Aligned_cols=290  Identities=20%  Similarity=0.326  Sum_probs=220.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|.++++||+|+||.||+|++..+++.||||....     ..+.+|+++|++|      .|||||+++++|..    
T Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~-----~~~~~E~~il~~l------~HpnIv~~~~~~~~----  154 (391)
T PHA03212         90 EKAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR-----GGTATEAHILRAI------NHPSIIQLKGTFTY----  154 (391)
T ss_pred             ccCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh-----hhhHHHHHHHHhC------CCCCCCCEeEEEEE----
Confidence            35789999999999999999999999999999997542     3467899999999      78899999999984    


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ....|+|||+++++|..++...  ..+++..++.|+.||+.||+|||++ |||||||||+|||++.              
T Consensus       155 ~~~~~lv~e~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~ylH~~-~IvHrDiKP~NIll~~--------------  217 (391)
T PHA03212        155 NKFTCLILPRYKTDLYCYLAAK--RNIAICDILAIERSVLRAIQYLHEN-RIIHRDIKAENIFINH--------------  217 (391)
T ss_pred             CCeeEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChHhEEEcC--------------
Confidence            4789999999999999888643  4589999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (391)
T PHA03212        218 --------------------------------------------------------------------------------  217 (391)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccc----cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY----KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~----~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                            .+.++|+|||+|+...    ......+||+.|+|||++.+..|+.++|||||||++|+
T Consensus       218 ----------------------~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~e  275 (391)
T PHA03212        218 ----------------------PGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFE  275 (391)
T ss_pred             ----------------------CCCEEEEeCCcccccccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHH
Confidence                                  4569999999996422    12334579999999999999899999999999999999


Q ss_pred             HHhCCCCCCCCCC-CCCCCChHHHHHHHHHhCCCchhhhcCCCcc-cccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          356 LATGDVLFDPHSG-DNYDRDEDHLALMMELLGMMPRKIAFGGRYS-RDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       356 lltG~~PF~~~~~-~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |++|..||..... ........++..+...+|..|..+....... ...+...     .......+....   .+.....
T Consensus       276 lltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~  347 (391)
T PHA03212        276 MATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGL-----AKKSSRKPGSRP---LWTNLYE  347 (391)
T ss_pred             HHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHH-----HhccCCCCCCCC---CHHHHhh
Confidence            9999987654322 2222345678888888888776543211100 0000000     000000000000   0000012


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      .+.++.+||.+||++||.+||||.|+|+||||+..+..
T Consensus       348 ~~~~l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~~~~  385 (391)
T PHA03212        348 LPIDLEYLICKMLAFDAHHRPSAEALLDFAAFQDIPDP  385 (391)
T ss_pred             hhhhHHHHHHHHhcCChhhCCCHHHHhcChhhccCCCC
Confidence            45688999999999999999999999999999876554

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=3.8e-46  Score=373.89  Aligned_cols=286  Identities=29%  Similarity=0.412  Sum_probs=218.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|++.++||+|+||+||+|++..+++.||||++....  .....+.+|+.+++.+      .||||+++++++.    
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~----   73 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGL------KHANIVLLHDIIH----   73 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhC------CCCCcCeEEEEEe----
Confidence            478999999999999999999999999999999987543  2234567899999999      7888999999998    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      .....|+||||++++|.+++... ...+++..++.++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        74 ~~~~~~lv~e~~~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dlkp~Nill~~-------------  138 (303)
T cd07869          74 TKETLTLVFEYVHTDLCQYMDKH-PGGLHPENVKLFLFQLLRGLSYIHQR-YILHRDLKPQNLLISD-------------  138 (303)
T ss_pred             cCCeEEEEEECCCcCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEECC-------------
Confidence            45789999999998999888643 34589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (303)
T cd07869         139 --------------------------------------------------------------------------------  138 (303)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~  354 (530)
                                             .+.+||+|||++....   .......||+.|+|||++.+. .++.++|||||||++|
T Consensus       139 -----------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~  195 (303)
T cd07869         139 -----------------------TGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFV  195 (303)
T ss_pred             -----------------------CCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHH
Confidence                                   4569999999986432   223446789999999998764 5899999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||.+..     .....+..+...++.+....+...... ..+.... +   .............     ....
T Consensus       196 ~l~~g~~pf~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~---~~~~~~~~~~~~~-----~~~~  260 (303)
T cd07869         196 EMIQGVAAFPGMK-----DIQDQLERIFLVLGTPNEDTWPGVHSL-PHFKPER-F---TLYSPKNLRQAWN-----KLSY  260 (303)
T ss_pred             HHHhCCCCCCCCc-----cHHHHHHHHHHHhCCCChhhccchhhc-ccccccc-c---cccCCccHHHHhh-----ccCC
Confidence            9999999997532     245667777777776655444322111 0010000 0   0000000000000     0123


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ++++.+||.+||++||.+|||+.|+|+||||+..+
T Consensus       261 ~~~~~dli~~mL~~dp~~R~s~~~~l~h~~f~~~~  295 (303)
T cd07869         261 VNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDLP  295 (303)
T ss_pred             ChHHHHHHHHHhccCchhccCHHHHhcCcccccCC
Confidence            46789999999999999999999999999998754

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=5.5e-46  Score=369.46  Aligned_cols=280  Identities=30%  Similarity=0.508  Sum_probs=216.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|++.+.||+|+||+||+|+++.+++.||+|+++...   .....+.+|+.+++.+      .||||++++++|.    
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~----   70 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTL------KQENIVELKEAFR----   70 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhC------CCccccchhhhEe----
Confidence            47999999999999999999999999999999887542   2345678899999998      7888999999998    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....+|+||||+.+++.+.+... ...+++..++.++.||+.||.|||+. ||+||||||+|||++.             
T Consensus        71 ~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dlkp~Nill~~-------------  135 (287)
T cd07848          71 RRGKLYLVFEYVEKNMLELLEEM-PNGVPPEKVRSYIYQLIKAIHWCHKN-DIVHRDIKPENLLISH-------------  135 (287)
T ss_pred             cCCEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEcC-------------
Confidence            45789999999966666665432 34589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (287)
T cd07848         136 --------------------------------------------------------------------------------  135 (287)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                             ++.++|+|||++.....    ......||+.|+|||++.+..++.++|||||||++|
T Consensus       136 -----------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~  192 (287)
T cd07848         136 -----------------------NDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILG  192 (287)
T ss_pred             -----------------------CCcEEEeeccCcccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHH
Confidence                                   45699999999975432    223457899999999999988999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|++||.+.+      ..+.+..+....|..|...+.... ....+.      ...   ..................
T Consensus       193 el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~---~~~~~~~~~~~~~~~~~~  256 (287)
T cd07848         193 ELSDGQPLFPGES------EIDQLFTIQKVLGPLPAEQMKLFY-SNPRFH------GLR---FPAVNHPQSLERRYLGIL  256 (287)
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHHhhCCCCHHHHHhhh-ccchhc------ccc---cCcccCcccHHHhhhccc
Confidence            9999999997543      456677777888887765442110 000000      000   000000000001112345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      +.++.+||.+||++||.+|||++|+|+||||
T Consensus       257 s~~~~dll~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         257 SGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             CHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            6789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.3e-47  Score=376.55  Aligned_cols=250  Identities=24%  Similarity=0.338  Sum_probs=208.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.+.||+|+||.||+|.+..+++.||||++....    .....+.+|+.+++++      .||||+++++++.   
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~---   71 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEV------SHPFIIRLFWTEH---   71 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhC------CCCcHhhhHhhhc---
Confidence            47999999999999999999999999999999986532    2345677899999999      7889999999988   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       +...+|+||||+ +++|.+++...  +.+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~NIli~~-----------  136 (291)
T cd05612          72 -DQRFLYMLMEYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEYLHSK-EIVYRDLKPENILLDK-----------  136 (291)
T ss_pred             -cCCeEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHeEECC-----------
Confidence             457999999999 88999998643  3589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (291)
T cd05612         137 --------------------------------------------------------------------------------  136 (291)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                               ++.++|+|||++..........+||+.|+|||++.+..++.++|||||||++|+|
T Consensus       137 -------------------------~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l  191 (291)
T cd05612         137 -------------------------EGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEM  191 (291)
T ss_pred             -------------------------CCCEEEEecCcchhccCCcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHH
Confidence                                     4569999999997665555566899999999999998899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||.+.+      .......+                                          ......++...+.
T Consensus       192 ~~g~~pf~~~~------~~~~~~~i------------------------------------------~~~~~~~~~~~~~  223 (291)
T cd05612         192 LVGYPPFFDDN------PFGIYEKI------------------------------------------LAGKLEFPRHLDL  223 (291)
T ss_pred             HhCCCCCCCCC------HHHHHHHH------------------------------------------HhCCcCCCccCCH
Confidence            99999996432      11111111                                          1112233445567


Q ss_pred             HHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      .+++||.+||+.||.+|++     +.++++||||+..
T Consensus       224 ~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~  260 (291)
T cd05612         224 YAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSV  260 (291)
T ss_pred             HHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCC
Confidence            8999999999999999995     9999999999854

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-46  Score=378.70  Aligned_cols=260  Identities=31%  Similarity=0.440  Sum_probs=216.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ...|.+.+.||+|.||.||+|+++.+|+.||+|++.+...    ..+.+.+|+.||++|.     .|||||.++++|+. 
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~-----~hpniv~l~~~~e~-  107 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLS-----GHPNIVQLKDAFED-  107 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhcc-----CCCCEEEEEEEEEc-
Confidence            5789999999999999999999999999999999877543    3468899999999994     38999999999994 


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                         ...+++|||+| ||.|++.+...   .+++..+..++.|++.|+.|||+. ||+||||||+|||+....+.      
T Consensus       108 ---~~~~~lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~-gvvHrDlKpEN~L~~~~~~~------  174 (382)
T KOG0032|consen  108 ---PDSVYLVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSL-GVVHRDLKPENLLLASKDEG------  174 (382)
T ss_pred             ---CCeEEEEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhC-CceeccCCHHHeeeccccCC------
Confidence               47999999999 99999999765   399999999999999999999995 99999999999999552110      


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (382)
T KOG0032|consen  175 --------------------------------------------------------------------------------  174 (382)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                                ...++++|||+|.....  .....+||+.|+|||++.+.+|+..+||||+||++
T Consensus       175 --------------------------~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~  228 (382)
T KOG0032|consen  175 --------------------------SGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVIL  228 (382)
T ss_pred             --------------------------CCcEEEeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHH
Confidence                                      24699999999987654  46778999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |.|++|.+||.+.+..      .....+.  .|..        .                            -....+..
T Consensus       229 yiLL~G~~PF~~~~~~------~~~~~i~--~~~~--------~----------------------------f~~~~w~~  264 (382)
T KOG0032|consen  229 YILLSGVPPFWGETEF------EIFLAIL--RGDF--------D----------------------------FTSEPWDD  264 (382)
T ss_pred             HHHhhCCCCCcCCChh------HHHHHHH--cCCC--------C----------------------------CCCCCccc
Confidence            9999999999765421      1111110  0100        0                            01123456


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ++..+++||++||..||.+|+||.++|+|||++...
T Consensus       265 is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~~  300 (382)
T KOG0032|consen  265 ISESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSIG  300 (382)
T ss_pred             cCHHHHHHHHHhcccCcccCCCHHHHhcCccccCCc
Confidence            688999999999999999999999999999998753

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-47  Score=370.40  Aligned_cols=259  Identities=27%  Similarity=0.404  Sum_probs=209.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .+|...+.||+|+||+||++.+..+|..+|+|.+..... ..+.+.+|+.+|.+|      .|||||++++......  .
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l------~~p~IV~~~G~~~~~~--~   88 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRL------NHPNIVQYYGSSSSRE--N   88 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhC------CCCCEEeeCCcccccc--C
Confidence            468899999999999999999999999999997665421 145688999999999      6888999999755321  1


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..++|.|||+ +|+|.+++..... .+++..++.+.+||+.||+|||++ |||||||||+|||++..             
T Consensus        89 ~~~~i~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~-g~vH~DiK~~NiLl~~~-------------  153 (313)
T KOG0198|consen   89 DEYNIFMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSK-GIVHCDIKPANILLDPS-------------  153 (313)
T ss_pred             eeeEeeeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhC-CEeccCcccceEEEeCC-------------
Confidence            4799999999 9999999986554 699999999999999999999998 99999999999999541             


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (313)
T KOG0198|consen  154 --------------------------------------------------------------------------------  153 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcCCC-CCCcchhHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACI  352 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~i  352 (530)
                                            ++.+||+|||++.....      ......||+.|||||++.... ...++|||||||+
T Consensus       154 ----------------------~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCt  211 (313)
T KOG0198|consen  154 ----------------------NGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCT  211 (313)
T ss_pred             ----------------------CCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCE
Confidence                                  25699999999976542      134578999999999998632 3459999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +.||+||++||...        ......+..+....                                     ..+.++.
T Consensus       212 VvEM~Tg~~PW~~~--------~~~~~~~~~ig~~~-------------------------------------~~P~ip~  246 (313)
T KOG0198|consen  212 VVEMLTGKPPWSEF--------FEEAEALLLIGRED-------------------------------------SLPEIPD  246 (313)
T ss_pred             EEeccCCCCcchhh--------cchHHHHHHHhccC-------------------------------------CCCCCCc
Confidence            99999999999532        11222222211000                                     1124566


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ..+.++++||.+||..||.+||||+++|.|||.+....
T Consensus       247 ~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~~~  284 (313)
T KOG0198|consen  247 SLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQNSI  284 (313)
T ss_pred             ccCHHHHHHHHHHhhcCcccCcCHHHHhhChhhhcccc
Confidence            78899999999999999999999999999999987544

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=1e-46  Score=382.48  Aligned_cols=252  Identities=24%  Similarity=0.361  Sum_probs=210.3

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +.++|.+.+.||+|+||.||+|++..+++.||||+++...    .....+.+|+.+|+++      .||||++++++|. 
T Consensus        16 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~-   88 (329)
T PTZ00263         16 KLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMEL------SHPFIVNMMCSFQ-   88 (329)
T ss_pred             CchheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC------CCCCCCcEEEEEE-
Confidence            3578999999999999999999999999999999987542    2345678899999998      7889999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .+..+|+||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.         
T Consensus        89 ---~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~dlkp~NIll~~---------  153 (329)
T PTZ00263         89 ---DENRVYFLLEFVVGGELFTHLRKA--GRFPNDVAKFYHAELVLAFEYLHSK-DIIYRDLKPENLLLDN---------  153 (329)
T ss_pred             ---cCCEEEEEEcCCCCChHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHEEECC---------
Confidence               457899999999 88999988743  4589999999999999999999997 9999999999999955         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (329)
T PTZ00263        154 --------------------------------------------------------------------------------  153 (329)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                                 ++.+||+|||++...........||+.|+|||++.+..++.++|||||||++|
T Consensus       154 ---------------------------~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  206 (329)
T PTZ00263        154 ---------------------------KGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLY  206 (329)
T ss_pred             ---------------------------CCCEEEeeccCceEcCCCcceecCChhhcCHHHHcCCCCCCcceeechHHHHH
Confidence                                       46799999999977655555668999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|..||...+      .......                                          +......++...
T Consensus       207 elltg~~pf~~~~------~~~~~~~------------------------------------------i~~~~~~~p~~~  238 (329)
T PTZ00263        207 EFIAGYPPFFDDT------PFRIYEK------------------------------------------ILAGRLKFPNWF  238 (329)
T ss_pred             HHHcCCCCCCCCC------HHHHHHH------------------------------------------HhcCCcCCCCCC
Confidence            9999999995432      1111111                                          111112233445


Q ss_pred             HHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      +..+.+||.+||+.||.+|++     ++++++||||+..
T Consensus       239 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~  277 (329)
T PTZ00263        239 DGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGA  277 (329)
T ss_pred             CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCCC
Confidence            678999999999999999997     7999999999863

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.3e-48  Score=348.74  Aligned_cols=257  Identities=24%  Similarity=0.393  Sum_probs=221.7

Q ss_pred             cEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           37 DTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        37 ~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..+..++|.+.+.||+|-||.||+|+.+.++-.||+|++.+.+    ....++.+|++|...|      .||||+++|++
T Consensus        17 ~~~~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L------~hpnilrlY~~   90 (281)
T KOG0580|consen   17 KTWTLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHL------RHPNILRLYGY   90 (281)
T ss_pred             cccchhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeeccc------CCccHHhhhhh
Confidence            3445689999999999999999999999999999999988764    3345678899998888      78899999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      |.    +...+||++||. +|.|+..+.......+++..+..+++|++.||.|||.+ +||||||||+|+|+..      
T Consensus        91 fh----d~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k-~VIhRdiKpenlLlg~------  159 (281)
T KOG0580|consen   91 FH----DSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLK-RVIHRDIKPENLLLGS------  159 (281)
T ss_pred             ee----ccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccC-CcccCCCCHHHhccCC------
Confidence            99    458999999999 99999999876777799999999999999999999997 9999999999999955      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (281)
T KOG0580|consen  160 --------------------------------------------------------------------------------  159 (281)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc-ccccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT-YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~-~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                    .+.+|++|||.+... .....+.+||..|.+||+..+..++..+|+|++|
T Consensus       160 ------------------------------~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lg  209 (281)
T KOG0580|consen  160 ------------------------------AGELKIADFGWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLG  209 (281)
T ss_pred             ------------------------------CCCeeccCCCceeecCCCCceeeecccccCCHhhcCCCCccchhhHHHHH
Confidence                                          567999999999765 4456778999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      ++.||++.|.+||...+      ..+...                                          ++..-.+.+
T Consensus       210 vl~yeflvg~ppFes~~------~~etYk------------------------------------------rI~k~~~~~  241 (281)
T KOG0580|consen  210 VLCYEFLVGLPPFESQS------HSETYK------------------------------------------RIRKVDLKF  241 (281)
T ss_pred             HHHHHHHhcCCchhhhh------hHHHHH------------------------------------------HHHHccccC
Confidence            99999999999996433      122222                                          222233456


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +..++.++.|||.+||..+|.+|.+..|++.|||+...
T Consensus       242 p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~a~  279 (281)
T KOG0580|consen  242 PSTISGGAADLISRLLVKNPIERLALTEVMDHPWIVAN  279 (281)
T ss_pred             CcccChhHHHHHHHHhccCccccccHHHHhhhHHHHhc
Confidence            67788999999999999999999999999999998753

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=6.6e-46  Score=380.64  Aligned_cols=306  Identities=28%  Similarity=0.449  Sum_probs=228.2

Q ss_pred             CccccccCcEe--eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCC
Q 045988           29 GYHAVRMGDTF--KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        29 ~~~~~~~g~~~--~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h  103 (530)
                      +|++|.+|+..  ..++|++.+.||+|+||.||+|.+..+++.||||++...   ......+.+|+.+++.+      .|
T Consensus         2 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h   75 (355)
T cd07874           2 QFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV------NH   75 (355)
T ss_pred             cceeeccCchhhhhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHh------CC
Confidence            57899998842  358999999999999999999999999999999988653   22345677899999998      78


Q ss_pred             cceeEecceeeecCC--CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcE
Q 045988          104 KCVVKLLDHFKHSGP--NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENV  181 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~--~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NI  181 (530)
                      |||++++++|.....  .....|+||||++++|...+..    .+++..+..++.||+.||+|||++ ||+||||||+||
T Consensus        76 ~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~-givHrDikp~Ni  150 (355)
T cd07874          76 KNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNI  150 (355)
T ss_pred             CchhceeeeeeccccccccceeEEEhhhhcccHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChHHE
Confidence            889999999875321  2246899999998888887742    388999999999999999999997 999999999999


Q ss_pred             EEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 045988          182 LLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGD  261 (530)
Q Consensus       182 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (530)
                      |++.                                                                            
T Consensus       151 ll~~----------------------------------------------------------------------------  154 (355)
T cd07874         151 VVKS----------------------------------------------------------------------------  154 (355)
T ss_pred             EECC----------------------------------------------------------------------------
Confidence            9954                                                                            


Q ss_pred             CcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCC
Q 045988          262 SVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                              ++.++|+|||++......  .....||+.|+|||++.+..
T Consensus       155 ----------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  194 (355)
T cd07874         155 ----------------------------------------DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  194 (355)
T ss_pred             ----------------------------------------CCCEEEeeCcccccCCCccccCCccccCCccCHHHHcCCC
Confidence                                                    457999999999764332  34567899999999999989


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc-cccccccCccccchhcccC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS-RDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  418 (530)
                      ++.++|||||||++|+|++|..||.+..      ..+....+...++.+..+++...... ..+................
T Consensus       195 ~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (355)
T cd07874         195 YKENVDIWSVGCIMGEMVRHKILFPGRD------YIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLF  268 (355)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhc
Confidence            9999999999999999999999997543      45566667777776655443222111 1111111111000000000


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      + ..............+..+++||.+||.+||.+|||+.|+|+||||...
T Consensus       269 ~-~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         269 P-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             c-ccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence            0 000000011122345678999999999999999999999999999854

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-46  Score=365.56  Aligned_cols=309  Identities=23%  Similarity=0.333  Sum_probs=219.4

Q ss_pred             cEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           37 DTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        37 ~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..+-.+.|++++.||.|.-|+||+|+.+.++..+|+|++.+..    ....++..|-+||..+      +||.++.+|..
T Consensus        72 ~~l~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~l------DHPFlPTLYa~  145 (459)
T KOG0610|consen   72 GSLGLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLL------DHPFLPTLYAS  145 (459)
T ss_pred             CccCHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhc------CCCccchhhhe
Confidence            4444578999999999999999999999999999999998764    2345667799999999      99999999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      |+    ...+.|+||||| ||+|..+.+....+.+++..+++++..++.||+|||- +|||.||||||||||...     
T Consensus       146 fe----t~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHm-lGivYRDLKPENILvred-----  215 (459)
T KOG0610|consen  146 FE----TDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHM-LGIVYRDLKPENILVRED-----  215 (459)
T ss_pred             ee----ccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHh-hceeeccCCcceeEEecC-----
Confidence            99    568999999999 9999999998888889999999999999999999998 599999999999999652     


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                     +++++.++...           ..|....  +.....         .  ..+.+.      ..++
T Consensus       216 ---------------GHIMLsDFDLS-----------~~~~~~P--t~~~s~---------~--~~~~~~------~~~~  250 (459)
T KOG0610|consen  216 ---------------GHIMLSDFDLS-----------LRCPVSP--TLVKSS---------S--PRSSGS------QPSC  250 (459)
T ss_pred             ---------------CcEEeeecccc-----------ccCCCCC--eeeccC---------C--CCCCCC------Cccc
Confidence                           23333322221           1110000  000000         0  000000      0011


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCc--------ccccccccCCCCCCCCccCChhhcCCCCCCc
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGN--------ACWTYKQFTNDIQTRQYRCPEVLLGSKYSTP  343 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~--------a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~  343 (530)
                      +        +..-.|........++      ..-| .|++.        |........++|||-.|.|||++.|..++.+
T Consensus       251 ~--------~~~~s~f~~r~~~~~~------~~~k-~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsA  315 (459)
T KOG0610|consen  251 R--------SRQPSCFSPRCLSSSK------KRKK-KDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSA  315 (459)
T ss_pred             c--------cccccccccchhcccc------cccc-ccccccccchhhhcCCCCccccccccccccccceeeecCCCCch
Confidence            1        1111111111000000      0000 22221        1122233567899999999999999999999


Q ss_pred             chhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhh
Q 045988          344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       344 ~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      +|+|+|||++||||.|..||.+.+..         +.+.++++..+                                  
T Consensus       316 VDWWtfGIflYEmLyG~TPFKG~~~~---------~Tl~NIv~~~l----------------------------------  352 (459)
T KOG0610|consen  316 VDWWTFGIFLYEMLYGTTPFKGSNNK---------ETLRNIVGQPL----------------------------------  352 (459)
T ss_pred             hhHHHHHHHHHHHHhCCCCcCCCCch---------hhHHHHhcCCC----------------------------------
Confidence            99999999999999999999876522         22333333322                                  


Q ss_pred             hhhhccCC--hhcHHHHHHHHhhccCcCCCCCcC----HHHHhcCCCCCCCC
Q 045988          424 LIEKYDFS--EKDANDMADFLVPILDFVPEKRPT----AAQCLTHPWINVGP  469 (530)
Q Consensus       424 ~~~~~~~~--~~~~~~~~dLl~~mL~~dP~~Rpt----a~elL~hp~f~~~~  469 (530)
                           .++  ..++.+++|||+++|.+||.+|..    |.||-+||||+.-.
T Consensus       353 -----~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVn  399 (459)
T KOG0610|consen  353 -----KFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVN  399 (459)
T ss_pred             -----cCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCCC
Confidence                 222  246789999999999999999999    99999999998654

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1.5e-45  Score=366.84  Aligned_cols=282  Identities=32%  Similarity=0.506  Sum_probs=218.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCC-CCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQ-TSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~-~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+|++.+.||+|+||.||+|++.. +++.||+|+++...   .......+|+.+++.+...   .||||+++++++....
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~hpniv~~~~~~~~~~   77 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF---EHPNVVRLFDVCTVSR   77 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhccc---CCCCcceEEEEEeccc
Confidence            479999999999999999999854 57899999876532   2234567888888877532   6999999999886432


Q ss_pred             -CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 -PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 -~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .....+++||||++++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        78 ~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~-~iiH~dlkp~Nil~~~-----------  145 (290)
T cd07862          78 TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILVTS-----------  145 (290)
T ss_pred             CCCCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEEcC-----------
Confidence             134679999999988999999766556689999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (290)
T cd07862         146 --------------------------------------------------------------------------------  145 (290)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                               ++.++|+|||++.....  ......||+.|+|||++.+..++.++|||||||++|
T Consensus       146 -------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~  200 (290)
T cd07862         146 -------------------------SGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFA  200 (290)
T ss_pred             -------------------------CCCEEEccccceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHH
Confidence                                     45799999999965432  234457899999999999889999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCC-cccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGR-YSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +|++|.+||.+..      ..+.+..+....+.+....+.... .....|....         ..+..       .+...
T Consensus       201 el~~g~~~f~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-------~~~~~  258 (290)
T cd07862         201 EMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKS---------AQPIE-------KFVTD  258 (290)
T ss_pred             HHHcCCCCcCCCC------HHHHHHHHHHHhCCCChhhchhhhcccchhccCCC---------CCCHH-------HHccC
Confidence            9999999997544      567777888777765543322111 0000110000         00000       11224


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+..+.+||.+||+.||++|||+.|+|+||||
T Consensus       259 ~~~~~~~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         259 IDELGKDLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             CCHHHHHHHHHHhccCchhcCCHHHHhcCCCC
Confidence            56788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1.2e-45  Score=388.53  Aligned_cols=285  Identities=27%  Similarity=0.424  Sum_probs=220.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC---
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG---  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~---  117 (530)
                      .++|++.++||+|+||.||+|.+..+++.||||.+....   ....+|+.+|+.+      .|||||+++++|....   
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~---~~~~~Ei~il~~l------~h~niv~l~~~~~~~~~~~  135 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP---QYKNRELLIMKNL------NHINIIFLKDYYYTECFKK  135 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc---chHHHHHHHHHhc------CCCCCcceeeeEeeccccc
Confidence            568999999999999999999999999999999876543   2345799999999      7888999998875421   


Q ss_pred             -CCCcEEEEEEeccCcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          118 -PNGQHVCMVFEYLGENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       118 -~~~~~~~lVmE~~~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                       ....++++||||++++|.+++...  ....+++..++.++.||+.||+|||++ |||||||||+||||+..        
T Consensus       136 ~~~~~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~-~IiHrDLKp~NILl~~~--------  206 (440)
T PTZ00036        136 NEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK-FICHRDLKPQNLLIDPN--------  206 (440)
T ss_pred             CCCceEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCcCHHHEEEcCC--------
Confidence             123468899999988998887643  234589999999999999999999997 99999999999999541        


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (440)
T PTZ00036        207 --------------------------------------------------------------------------------  206 (440)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCC-CCCCcchhHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFAC  351 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~  351 (530)
                                                 ...+||+|||+|....  ......+||+.|+|||++.+. .|+.++|||||||
T Consensus       207 ---------------------------~~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGv  259 (440)
T PTZ00036        207 ---------------------------THTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGC  259 (440)
T ss_pred             ---------------------------CCceeeeccccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHH
Confidence                                       2358999999997542  233456789999999998764 5999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|.+||.+.+      ..+.+..++..+|.++.+........   |... .+..+.       ...+  ...++
T Consensus       260 il~elltG~~pf~~~~------~~~~~~~i~~~~~~p~~~~~~~~~~~---~~~~-~~~~~~-------~~~l--~~~~p  320 (440)
T PTZ00036        260 IIAEMILGYPIFSGQS------SVDQLVRIIQVLGTPTEDQLKEMNPN---YADI-KFPDVK-------PKDL--KKVFP  320 (440)
T ss_pred             HHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHHHhchh---hhcc-cCCccC-------chhH--HHHhc
Confidence            9999999999997654      56788888888888766543221100   0000 000000       0000  11234


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ...++++.+||.+||++||.+|||+.|+|+||||..-.
T Consensus       321 ~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~  358 (440)
T PTZ00036        321 KGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLR  358 (440)
T ss_pred             cCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhh
Confidence            45678899999999999999999999999999997643

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.1e-45  Score=374.00  Aligned_cols=284  Identities=28%  Similarity=0.433  Sum_probs=219.2

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC-
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP-  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~-  118 (530)
                      +|++.++||+|+||.||+|++..+++.||||++....   .....+.+|+++++++      .||||+++++++..... 
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~~~~~   74 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLL------RHPDIVEIKHIMLPPSRR   74 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhC------CCCCEeeecceEeccCCC
Confidence            6999999999999999999999999999999876431   2234578899999999      78889999998865421 


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....+|+|||||+++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        75 ~~~~~~lv~e~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIll~~-------------  138 (338)
T cd07859          75 EFKDIYVVFELMESDLHQVIKAN--DDLTPEHHQFFLYQLLRALKYIHTA-NVFHRDLKPKNILANA-------------  138 (338)
T ss_pred             CCceEEEEEecCCCCHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEECC-------------
Confidence            22468999999998999988643  3489999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (338)
T cd07859         139 --------------------------------------------------------------------------------  138 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcC--CCCCCcchhHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLG--SKYSTPADLWSFA  350 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~--~~~~~~~DiWSlG  350 (530)
                                             ++.+||+|||++.....      .....+||+.|+|||++.+  ..++.++||||||
T Consensus       139 -----------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlG  195 (338)
T cd07859         139 -----------------------DCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIG  195 (338)
T ss_pred             -----------------------CCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHH
Confidence                                   46799999999864321      1234579999999999876  5789999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--cccccccCccccchhcccCCchhhhhhhc
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |++|+|++|++||.+..      ....+..+...+|.++..........  ..++..      .......    ....  
T Consensus       196 vvl~el~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~----~~~~--  257 (338)
T cd07859         196 CIFAEVLTGKPLFPGKN------VVHQLDLITDLLGTPSPETISRVRNEKARRYLSS------MRKKQPV----PFSQ--  257 (338)
T ss_pred             HHHHHHHcCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHh------hcccCCC----chHH--
Confidence            99999999999997543      45667778888888776554322110  000000      0000000    0000  


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                       .....++.+.+||.+||+.||++|||+.|+|+||||+....
T Consensus       258 -~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~~~~  298 (338)
T cd07859         258 -KFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAK  298 (338)
T ss_pred             -hcCCCChHHHHHHHHHcCcCcccCCCHHHHhcCchhhhcCc
Confidence             01234577899999999999999999999999999986544

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=3.2e-45  Score=364.07  Aligned_cols=281  Identities=33%  Similarity=0.518  Sum_probs=219.6

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC-C
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG-P  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~-~  118 (530)
                      +|++.+.||+|+||+||+|+++.+++.||+|+++...   .......+|+.+++.+.+.   +||||+++++++.... .
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~h~ni~~~~~~~~~~~~~   77 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAF---DHPNIVRLMDVCATSRTD   77 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhc---CCCCeeeeeeeeccccCC
Confidence            5999999999999999999999999999999887532   2234567899998888543   6999999999987532 2


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....+++||||+.++|.+++.......+++..++.++.||+.||.|||++ ||+||||||+|||++.             
T Consensus        78 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dikp~Nili~~-------------  143 (288)
T cd07863          78 RETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN-CIVHRDLKPENILVTS-------------  143 (288)
T ss_pred             CCceEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEECC-------------
Confidence            34678999999988999988765555699999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (288)
T cd07863         144 --------------------------------------------------------------------------------  143 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                             ++.++|+|||++......  .....||..|+|||++.+..++.++|||||||++|+|
T Consensus       144 -----------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  200 (288)
T cd07863         144 -----------------------GGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEM  200 (288)
T ss_pred             -----------------------CCCEEECccCccccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHH
Confidence                                   456999999999754322  3455789999999999988899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCC-cccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGR-YSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      ++|.+||.+..      ..+.+..+...++......+.... .....+....              .  ..........+
T Consensus       201 ~~g~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~  258 (288)
T cd07863         201 FRRKPLFCGNS------EADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRG--------------P--RPVQSVVPEIE  258 (288)
T ss_pred             HhCCcCcCCCC------HHHHHHHHHHHhCCCChhhCcccccccccccCCCC--------------C--CchHHhCcCcC
Confidence            99999996543      556777777777766544332111 0000110000              0  00001223456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ..+.+||.+||++||.+|||+.|+|.||||
T Consensus       259 ~~~~~li~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         259 ESGAQLLLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             HHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=2.4e-45  Score=377.80  Aligned_cols=307  Identities=28%  Similarity=0.434  Sum_probs=227.3

Q ss_pred             CCccccccCcEe--eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCC
Q 045988           28 GGYHAVRMGDTF--KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        28 ~~~~~~~~g~~~--~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      ++++++.+++..  ..++|++.+.||+|+||.||+|.+..+++.||||++...   ......+.+|+.+++.+      .
T Consensus         8 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~   81 (364)
T cd07875           8 NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCV------N   81 (364)
T ss_pred             ccceeeecCcchhchhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhc------C
Confidence            356777776642  257999999999999999999999999999999988653   23345677899999988      7


Q ss_pred             CcceeEecceeeecC--CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          103 KKCVVKLLDHFKHSG--PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~--~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                      ||||++++++|....  .....+|+||||++++|...+..    .++...+..++.||+.||+|||++ ||+||||||+|
T Consensus        82 h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dlkp~N  156 (364)
T cd07875          82 HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSN  156 (364)
T ss_pred             CCCccccceeecccccccccCeEEEEEeCCCCCHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhC-CeecCCCCHHH
Confidence            888999999886432  12346899999998898887742    378899999999999999999997 99999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      ||++.                                                                           
T Consensus       157 Ill~~---------------------------------------------------------------------------  161 (364)
T cd07875         157 IVVKS---------------------------------------------------------------------------  161 (364)
T ss_pred             EEECC---------------------------------------------------------------------------
Confidence            99954                                                                           


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCC
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~  338 (530)
                                                               ++.++|+|||++......  .....||+.|+|||++.+.
T Consensus       162 -----------------------------------------~~~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~  200 (364)
T cd07875         162 -----------------------------------------DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGM  200 (364)
T ss_pred             -----------------------------------------CCcEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCC
Confidence                                                     457999999999764332  3456789999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccc-ccccccCccccchhccc
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSR-DFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  417 (530)
                      .++.++|||||||++|+|++|..||.+..      ....+..+...+|.++..++....... .+...............
T Consensus       201 ~~~~~~DiwSlG~il~ell~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (364)
T cd07875         201 GYKENVDIWSVGCIMGEMIKGGVLFPGTD------HIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKL  274 (364)
T ss_pred             CCCchhhHHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhh
Confidence            99999999999999999999999997544      456677777777776655432221110 00000000000000000


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .+ ..............+..+++||.+||++||.+|||+.|+|+||||...
T Consensus       275 ~~-~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~~  324 (364)
T cd07875         275 FP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW  324 (364)
T ss_pred             Cc-cccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcCcccccc
Confidence            00 000000011122235678999999999999999999999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-46  Score=370.40  Aligned_cols=255  Identities=27%  Similarity=0.480  Sum_probs=223.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+-|.+.+.||+|.|+.|-+|++.-+|..||+|++.+..   .....++.|++.|+.+      +|||||++|+++.   
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLV------QHpNiVRLYEViD---   87 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLV------QHPNIVRLYEVID---   87 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHh------cCcCeeeeeehhc---
Confidence            578999999999999999999999999999999998764   3456788999999999      7888999999988   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ....+|||+|+- +|+|+++|..+. .++.+..++.|+.||+.|+.|||+ +.+|||||||+||.+..+          
T Consensus        88 -TQTKlyLiLELGD~GDl~DyImKHe-~Gl~E~La~kYF~QI~~AI~YCHq-LHVVHRDLKPENVVFFEK----------  154 (864)
T KOG4717|consen   88 -TQTKLYLILELGDGGDLFDYIMKHE-EGLNEDLAKKYFAQIVHAISYCHQ-LHVVHRDLKPENVVFFEK----------  154 (864)
T ss_pred             -ccceEEEEEEecCCchHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHHhh-hhhhcccCCcceeEEeee----------
Confidence             568899999999 889999998655 459999999999999999999998 699999999999999663          


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (864)
T KOG4717|consen  155 --------------------------------------------------------------------------------  154 (864)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccc--ccccCCCCCCCCccCChhhcCCCCC-CcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT--YKQFTNDIQTRQYRCPEVLLGSKYS-TPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~--~~~~~~~~gt~~y~aPE~l~~~~~~-~~~DiWSlG~il  353 (530)
                                               -+-|||.|||++...  .+..++.+|+..|-|||+++|..|+ +++|||||||||
T Consensus       155 -------------------------lGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVIL  209 (864)
T KOG4717|consen  155 -------------------------LGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVIL  209 (864)
T ss_pred             -------------------------cCceEeeeccccccCCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHH
Confidence                                     356999999999653  4567889999999999999999986 788999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |-|++|++||...+      +.+.+.                                          .|+..++.+|..
T Consensus       210 yMLVCGq~PFqeAN------DSETLT------------------------------------------mImDCKYtvPsh  241 (864)
T KOG4717|consen  210 YMLVCGQPPFQEAN------DSETLT------------------------------------------MIMDCKYTVPSH  241 (864)
T ss_pred             HHHHhCCCcccccc------chhhhh------------------------------------------hhhcccccCchh
Confidence            99999999996544      333333                                          344456677888


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .+.+++|||..||..||.+|.+.+||..|+|++...+
T Consensus       242 vS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D~  278 (864)
T KOG4717|consen  242 VSKECRDLIQSMLVRDPKKRASLEEIVSTSWLQAGDR  278 (864)
T ss_pred             hhHHHHHHHHHHHhcCchhhccHHHHhccccccCCCC
Confidence            8999999999999999999999999999999998754

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.2e-46  Score=362.74  Aligned_cols=252  Identities=24%  Similarity=0.421  Sum_probs=213.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ..+|++.+.||+|+||.|-+|++...|+.||||.+++...    ..-.+.+||+||..|      +||||+.+|++|+  
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsL------NHPhII~IyEVFE--  123 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSL------NHPHIIQIYEVFE--  123 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhc------CCCceeehhhhhc--
Confidence            4799999999999999999999999999999998887643    234578999999999      8999999999999  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        +.+.+.|||||. +|.|++++....  .+++.+++.|++||+.|+.|||.+ +++|||||.+||||+.          
T Consensus       124 --NkdKIvivMEYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHkn-rVvHRDLKLENILLD~----------  188 (668)
T KOG0611|consen  124 --NKDKIVIVMEYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHKN-RVVHRDLKLENILLDQ----------  188 (668)
T ss_pred             --CCceEEEEEEecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhc-cceecccchhheeecC----------
Confidence              668999999999 999999998544  499999999999999999999998 9999999999999976          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (668)
T KOG0611|consen  189 --------------------------------------------------------------------------------  188 (668)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCC-CCcchhHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFACI  352 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~-~~~~DiWSlG~i  352 (530)
                                                +.++||+|||++....  .-..+++|+|-|.+||++.|.+| ++.+|.|||||+
T Consensus       189 --------------------------N~NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvL  242 (668)
T KOG0611|consen  189 --------------------------NNNIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVL  242 (668)
T ss_pred             --------------------------CCCeeeeccchhhhhccccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHH
Confidence                                      5679999999996543  33678899999999999999998 789999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      ||.|+.|..||++..      ....+.+|                                          ....+ +.+
T Consensus       243 LYtLVyGtMPFDG~D------hk~lvrQI------------------------------------------s~GaY-rEP  273 (668)
T KOG0611|consen  243 LYTLVYGTMPFDGRD------HKRLVRQI------------------------------------------SRGAY-REP  273 (668)
T ss_pred             HHHHhhcccccCCch------HHHHHHHh------------------------------------------hcccc-cCC
Confidence            999999999997643      11111111                                          01111 112


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ..+.++.-||++||..||++|.|+.+|..|=|++-+..
T Consensus       274 ~~PSdA~gLIRwmLmVNP~RRATieDiAsHWWvNwgy~  311 (668)
T KOG0611|consen  274 ETPSDASGLIRWMLMVNPERRATIEDIASHWWVNWGYN  311 (668)
T ss_pred             CCCchHHHHHHHHHhcCcccchhHHHHhhhheeecccc
Confidence            34567889999999999999999999999999876643

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=3.7e-45  Score=363.54  Aligned_cols=256  Identities=25%  Similarity=0.347  Sum_probs=207.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .|++.+.||+|+||+||+|.+..+++.||+|++....    .....+.+|+.+++++      .|++|++++++|.    
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l------~~~~iv~~~~~~~----   70 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKV------NSRFVVSLAYAYE----   70 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhc------CCCcEEEEEEEEc----
Confidence            3889999999999999999999999999999876532    2234567899999998      7888999999988    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .....++||||+ +++|..++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        71 ~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~iiH~dikp~Nill~~------------  137 (285)
T cd05631          71 TKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE-RIVYRDLKPENILLDD------------  137 (285)
T ss_pred             cCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCCCHHHEEECC------------
Confidence            457899999999 88998887654445689999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (285)
T cd05631         138 --------------------------------------------------------------------------------  137 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                              +..++|+|||++....  .......||+.|+|||++.+..|+.++|||||||++|+
T Consensus       138 ------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~e  193 (285)
T cd05631         138 ------------------------RGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYE  193 (285)
T ss_pred             ------------------------CCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHH
Confidence                                    4569999999997532  22345679999999999999899999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||......      .....+.....                                      .....++...+
T Consensus       194 l~~g~~pf~~~~~~------~~~~~~~~~~~--------------------------------------~~~~~~~~~~s  229 (285)
T cd05631         194 MIQGQSPFRKRKER------VKREEVDRRVK--------------------------------------EDQEEYSEKFS  229 (285)
T ss_pred             HHhCCCCCCCCCcc------hhHHHHHHHhh--------------------------------------cccccCCccCC
Confidence            99999999754311      11111111100                                      01112334557


Q ss_pred             HHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVGP  469 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~~  469 (530)
                      .++.+||++||+.||.+||+     ++++++||||....
T Consensus       230 ~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~  268 (285)
T cd05631         230 EDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNIN  268 (285)
T ss_pred             HHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCC
Confidence            88999999999999999997     99999999998754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=9e-46  Score=321.35  Aligned_cols=279  Identities=30%  Similarity=0.467  Sum_probs=227.6

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|.-+++||+|.||+||+|++..+++.||+|.++..   ........+||-+|+.|      .|.|||+++++..    .
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkel------khknivrl~dvlh----s   72 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL------KHKNIVRLHDVLH----S   72 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHh------hhcceeehhhhhc----c
Confidence            577889999999999999999999999999987654   34567889999999999      6778999999988    5


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      +..+-+|+|||..+|..++... ++.+....++.++.|++.||.|+|++ ++.|||+||.|.||..              
T Consensus        73 dkkltlvfe~cdqdlkkyfdsl-ng~~d~~~~rsfmlqllrgl~fchsh-nvlhrdlkpqnllin~--------------  136 (292)
T KOG0662|consen   73 DKKLTLVFEFCDQDLKKYFDSL-NGDLDPEIVRSFMLQLLRGLGFCHSH-NVLHRDLKPQNLLINR--------------  136 (292)
T ss_pred             CceeEEeHHHhhHHHHHHHHhc-CCcCCHHHHHHHHHHHHhhhhhhhhh-hhhhccCCcceEEecc--------------
Confidence            5789999999999999999754 35599999999999999999999998 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (292)
T KOG0662|consen  137 --------------------------------------------------------------------------------  136 (292)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~e  355 (530)
                                            ++.+||+|||+|+...-.   ....+-|.||++|.++.|.. |++..|+||.|||+.|
T Consensus       137 ----------------------ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifae  194 (292)
T KOG0662|consen  137 ----------------------NGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAE  194 (292)
T ss_pred             ----------------------CCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHH
Confidence                                  678999999999765432   44557799999999999866 8999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          356 LAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       356 llt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |.. |++.|++..      -.+++.+|+.++|++.++.|.....-.+|          ......+.....   ..+-+..
T Consensus       195 lanagrplfpg~d------vddqlkrif~~lg~p~ed~wps~t~lpdy----------k~yp~ypattsw---sqivp~l  255 (292)
T KOG0662|consen  195 LANAGRPLFPGND------VDDQLKRIFRLLGTPTEDQWPSMTKLPDY----------KPYPIYPATTSW---SQIVPKL  255 (292)
T ss_pred             HhhcCCCCCCCCc------HHHHHHHHHHHhCCCccccCCccccCCCC----------cccCCccccchH---HHHhhhh
Confidence            975 788897654      67899999999999988877554432222          111110100000   0111233


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ...-+||++++|..+|.+|++|+++|+||||...
T Consensus       256 ns~grdllqkll~cnp~qrisaeaalqhpyf~d~  289 (292)
T KOG0662|consen  256 NSTGRDLLQKLLKCNPAQRISAEAALQHPYFSDF  289 (292)
T ss_pred             cchhHHHHHHHhccCcccccCHHHHhcCcccccc
Confidence            4567899999999999999999999999999864

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=7.8e-46  Score=375.13  Aligned_cols=244  Identities=25%  Similarity=0.385  Sum_probs=200.9

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||.||+|.+..+|+.||||+++...    .....+.+|+.+++++      .||||+++++.|.    ....+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~hp~i~~~~~~~~----~~~~~   70 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNT------RHPFLTALKYSFQ----THDRL   70 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC------CCCCCCCEEEEEE----cCCEE
Confidence            46999999999999999999999999987642    2234567899999988      7888999999998    55799


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      ||||||+ +++|..++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        71 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~lH~~-~ivHrDlkp~NIll~~-----------------  130 (323)
T cd05571          71 CFVMEYANGGELFFHLSR--ERVFSEDRARFYGAEIVSALGYLHSC-DVVYRDLKLENLMLDK-----------------  130 (323)
T ss_pred             EEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhC-CeEeCCCCHHHEEECC-----------------
Confidence            9999999 8899888864  34589999999999999999999997 9999999999999954                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (323)
T cd05571         131 --------------------------------------------------------------------------------  130 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.+||+|||++....   ......+||+.|+|||++.+..|+.++|||||||++|+|++|
T Consensus       131 -------------------~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg  191 (323)
T cd05571         131 -------------------DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  191 (323)
T ss_pred             -------------------CCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcC
Confidence                               4569999999986421   223445799999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||....       ...+...                                         +......++...++++.
T Consensus       192 ~~Pf~~~~-------~~~~~~~-----------------------------------------~~~~~~~~p~~~~~~~~  223 (323)
T cd05571         192 RLPFYNQD-------HEKLFEL-----------------------------------------ILMEEIRFPRTLSPEAK  223 (323)
T ss_pred             CCCCCCCC-------HHHHHHH-----------------------------------------HHcCCCCCCCCCCHHHH
Confidence            99995422       1111110                                         11111233445678899


Q ss_pred             HHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      +||.+||+.||++||     ++.++++||||...
T Consensus       224 ~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~  257 (323)
T cd05571         224 SLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASI  257 (323)
T ss_pred             HHHHHHccCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence            999999999999999     89999999999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.2e-44  Score=365.29  Aligned_cols=293  Identities=26%  Similarity=0.397  Sum_probs=212.5

Q ss_pred             EEEeccccceEEEEEEeCC--CCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQ--TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVC  124 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~--~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~  124 (530)
                      .++||+|+||+||+|+++.  +++.||+|.+..... .....+|+.+|+++      .||||++++++|...  .+..+|
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~E~~~l~~l------~h~niv~~~~~~~~~--~~~~~~   76 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI-SMSACREIALLREL------KHPNVISLQKVFLSH--ADRKVW   76 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC-cHHHHHHHHHHHhc------CCCCCcceeeeEecC--CCcEEE
Confidence            4689999999999999764  678999998876432 45678899999999      788899999998754  446899


Q ss_pred             EEEeccCcCHHHHHHhhc-------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          125 MVFEYLGENLLTLIKYAD-------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       125 lVmE~~~~~L~~~i~~~~-------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      +||||++++|..++....       ...+++..++.++.||+.||+|||++ ||+||||||+|||+....+         
T Consensus        77 lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~-~ivHrDlkp~Nil~~~~~~---------  146 (317)
T cd07868          77 LLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEGP---------  146 (317)
T ss_pred             EEEeccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC-CEEcCCCCHHHEEEecCCC---------
Confidence            999999999998876432       12488999999999999999999997 9999999999999954110         


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (317)
T cd07868         147 --------------------------------------------------------------------------------  146 (317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcCC-CCCCcchhHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFA  350 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG  350 (530)
                                             ..+.+||+|||++.....      .....+||+.|+|||++.+. .|+.++||||||
T Consensus       147 -----------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG  203 (317)
T cd07868         147 -----------------------ERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIG  203 (317)
T ss_pred             -----------------------CcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHH
Confidence                                   035699999999975432      12356789999999999874 589999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCC---CCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          351 CICFELATGDVLFDPHSGDNY---DRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~---~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |++|+|++|.+||........   .....++..+...+|.++...+...............+.... ...........  
T Consensus       204 ~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--  280 (317)
T cd07868         204 CIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNT-YTNCSLIKYME--  280 (317)
T ss_pred             HHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhhhhccc-cCcccccchHH--
Confidence            999999999999975443211   123567788888888777655433211100000000000000 00000000000  


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                       ......+..+.+||.+||++||.+|||++|+|+||||
T Consensus       281 -~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         281 -KHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             -hcCCCCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence             0011224568899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-44  Score=368.06  Aligned_cols=258  Identities=24%  Similarity=0.367  Sum_probs=209.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.++||+|+||.||+|++..+++.||||+++...    .....+.+|+.++..+      .||||+++++++.   
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~iv~~~~~~~---   71 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTT------KSEWLVKLLYAFQ---   71 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhC------CCCCCccEEEEEE---
Confidence            47999999999999999999999999999999987642    2345577899999888      6888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .+.++||||||+ +++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~~-----------  136 (333)
T cd05600          72 -DDEYLYLAMEYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALHEL-GYIHRDLKPENFLIDA-----------  136 (333)
T ss_pred             -cCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEECC-----------
Confidence             457899999999 89999998643  3589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (333)
T cd05600         137 --------------------------------------------------------------------------------  136 (333)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                               ++.+||+|||++..........+||+.|+|||++.+..++.++|||||||++|+|
T Consensus       137 -------------------------~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el  191 (333)
T cd05600         137 -------------------------SGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEF  191 (333)
T ss_pred             -------------------------CCCEEEEeCcCCcccccccCCcccCccccChhHhcCCCCCCccceecchHHHhhh
Confidence                                     4579999999997665555667899999999999998999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|.+||...+      ..+....+.........                            +.      ........++
T Consensus       192 l~g~~pf~~~~------~~~~~~~i~~~~~~~~~----------------------------~~------~~~~~~~~s~  231 (333)
T cd05600         192 LCGFPPFSGST------PNETWENLKYWKETLQR----------------------------PV------YDDPRFNLSD  231 (333)
T ss_pred             hhCCCCCCCCC------HHHHHHHHHhccccccC----------------------------CC------CCccccccCH
Confidence            99999996533      11222211110000000                            00      0000023467


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ++.+||.+||..+|.+||++.++++||||+..
T Consensus       232 ~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~  263 (333)
T cd05600         232 EAWDLITKLINDPSRRFGSLEDIKNHPFFKEV  263 (333)
T ss_pred             HHHHHHHHHhhChhhhcCCHHHHHhCcccCCC
Confidence            89999999999999999999999999999864

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.6e-45  Score=375.11  Aligned_cols=252  Identities=25%  Similarity=0.327  Sum_probs=208.1

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCC-eEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTS-HYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~-~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ..++|++.+.||+|+||.||+|.+..++ ..||+|++....    .....+.+|+.+++.+      +||||+++++++.
T Consensus        28 ~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~Iv~~~~~~~  101 (340)
T PTZ00426         28 KYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYI------NHPFCVNLYGSFK  101 (340)
T ss_pred             ChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC------CCCCCcceEEEEE
Confidence            3578999999999999999999876654 789999886532    2345677899999998      7889999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          ....+|+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++.        
T Consensus       102 ----~~~~~~lv~Ey~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDLkp~NILl~~--------  166 (340)
T PTZ00426        102 ----DESYLYLVLEFVIGGEFFTFLRRN--KRFPNDVGCFYAAQIVLIFEYLQSL-NIVYRDLKPENLLLDK--------  166 (340)
T ss_pred             ----eCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEccCCCHHHEEECC--------
Confidence                457899999999 88999998743  3589999999999999999999997 9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (340)
T PTZ00426        167 --------------------------------------------------------------------------------  166 (340)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                                  ++.++|+|||++..........+||+.|+|||++.+..++.++|||||||++
T Consensus       167 ----------------------------~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil  218 (340)
T PTZ00426        167 ----------------------------DGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFI  218 (340)
T ss_pred             ----------------------------CCCEEEecCCCCeecCCCcceecCChhhcCHHHHhCCCCCccccccchhhHH
Confidence                                        4679999999997655545566899999999999998899999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||...+      .......+                                          ......++..
T Consensus       219 ~ell~G~~Pf~~~~------~~~~~~~i------------------------------------------~~~~~~~p~~  250 (340)
T PTZ00426        219 YEILVGCPPFYANE------PLLIYQKI------------------------------------------LEGIIYFPKF  250 (340)
T ss_pred             HHHhcCCCCCCCCC------HHHHHHHH------------------------------------------hcCCCCCCCC
Confidence            99999999996432      11111111                                          1111223445


Q ss_pred             cHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      .++.+.+||++||+.||.+|+     +++++++||||..-
T Consensus       251 ~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~  290 (340)
T PTZ00426        251 LDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNI  290 (340)
T ss_pred             CCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence            567899999999999999995     89999999999864

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1.2e-44  Score=364.05  Aligned_cols=283  Identities=31%  Similarity=0.480  Sum_probs=221.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|.+.++||+|+||+||+|++..+++.||+|.++...  .....+.+|+.+++++      .|+||+++++++.    
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~----   74 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDL------KHANIVTLHDIVH----   74 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhC------CCCCcceEEEEEe----
Confidence            468999999999999999999999999999999877542  2234577899999999      7888999999998    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      .....|+||||+.++|.+++.... ..+++..++.++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        75 ~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~-~ivH~dlkp~Nill~~-------------  139 (309)
T cd07872          75 TDKSLTLVFEYLDKDLKQYMDDCG-NIMSMHNVKIFLYQILRGLAYCHRR-KVLHRDLKPQNLLINE-------------  139 (309)
T ss_pred             eCCeEEEEEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEECC-------------
Confidence            447899999999889998876432 3488999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (309)
T cd07872         140 --------------------------------------------------------------------------------  139 (309)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                             .+.++|+|||++.....   ......+|+.|+|||++.+ ..++.++|||||||++|
T Consensus       140 -----------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~  196 (309)
T cd07872         140 -----------------------RGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFF  196 (309)
T ss_pred             -----------------------CCCEEECccccceecCCCccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHH
Confidence                                   45699999999865322   2334568999999999875 45899999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||.+.+      ..+.+..+.+.+|.++...+........+.. ..         +.....  ..........
T Consensus       197 el~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~--~~~~~~~~~~  258 (309)
T cd07872         197 EMASGRPLFPGST------VEDELHLIFRLLGTPTEETWPGISSNDEFKN-YN---------FPKYKP--QPLINHAPRL  258 (309)
T ss_pred             HHHhCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHhhhcchhhhhh-hh---------cCccCC--CchhhhccCC
Confidence            9999999997544      4567788888888887766543221111110 00         000000  0001112345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +.++.+||.+||++||.+|||+.|+|+||||+...
T Consensus       259 ~~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~  293 (309)
T cd07872         259 DTEGIELLTKFLQYESKKRISAEEAMKHAYFRSLG  293 (309)
T ss_pred             CHHHHHHHHHhccCChhhCCCHHHHhcChhhhhcc
Confidence            67889999999999999999999999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-47  Score=372.11  Aligned_cols=254  Identities=28%  Similarity=0.401  Sum_probs=212.0

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ....|..++.||+|+||.||+|.+..+++.||||++....  ...+.+.+|+.+|..+      .++||.++|+.|.   
T Consensus        11 ~~~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~------~~~~it~yygsyl---   81 (467)
T KOG0201|consen   11 PELLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQC------DSPNITEYYGSYL---   81 (467)
T ss_pred             cccccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhc------CcchHHhhhhhee---
Confidence            3457888999999999999999999999999999988654  3457788999999999      6788999999999   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .+..++++|||| ||++.++++...  .+.+..+..++++++.||.|||.+ +.+|||||+.|||+..           
T Consensus        82 -~g~~LwiiMey~~gGsv~~lL~~~~--~~~E~~i~~ilre~l~~l~ylH~~-~kiHrDIKaanil~s~-----------  146 (467)
T KOG0201|consen   82 -KGTKLWIIMEYCGGGSVLDLLKSGN--ILDEFEIAVILREVLKGLDYLHSE-KKIHRDIKAANILLSE-----------  146 (467)
T ss_pred             -ecccHHHHHHHhcCcchhhhhccCC--CCccceeeeehHHHHHHhhhhhhc-ceecccccccceeEec-----------
Confidence             568999999999 999999986332  258999999999999999999998 9999999999999965           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (467)
T KOG0201|consen  147 --------------------------------------------------------------------------------  146 (467)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                               .+.|||+|||.+.....   ...+++|||+|||||++.+..|+.++||||||++.
T Consensus       147 -------------------------~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITa  201 (467)
T KOG0201|consen  147 -------------------------SGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITA  201 (467)
T ss_pred             -------------------------cCcEEEEecceeeeeechhhccccccccccccchhhhccccccchhhhhhhhHHH
Confidence                                     46799999999965432   23678999999999999998999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |||++|.+||....+         +..++-+-...                                      .+.+...
T Consensus       202 iEla~GePP~s~~hP---------mrvlflIpk~~--------------------------------------PP~L~~~  234 (467)
T KOG0201|consen  202 IELAKGEPPHSKLHP---------MRVLFLIPKSA--------------------------------------PPRLDGD  234 (467)
T ss_pred             HHHhcCCCCCcccCc---------ceEEEeccCCC--------------------------------------CCccccc
Confidence            999999999964331         11111111111                                      1122335


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .++.+++||..||..||+.||+|.++|+|+|++...
T Consensus       235 ~S~~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~a~  270 (467)
T KOG0201|consen  235 FSPPFKEFVEACLDKNPEFRPSAKELLKHKFIKRAK  270 (467)
T ss_pred             cCHHHHHHHHHHhhcCcccCcCHHHHhhhHHHHhcC
Confidence            678899999999999999999999999999998643

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.4e-44  Score=371.04  Aligned_cols=286  Identities=25%  Similarity=0.345  Sum_probs=210.9

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +...+|.+++.||+|+||.||+|.+..+++.||+|+....     ....|+.+++++      .|+||+++++++..   
T Consensus        63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~-----~~~~E~~~l~~l------~h~~iv~~~~~~~~---  128 (357)
T PHA03209         63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG-----TTLIEAMLLQNV------NHPSVIRMKDTLVS---  128 (357)
T ss_pred             hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc-----ccHHHHHHHHhC------CCCCCcChhheEEe---
Confidence            3456899999999999999999999999999999985443     235699999998      78889999999984   


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                       +...|+|||++.++|.+++... ...+++..+..|+.||+.||.|||++ |||||||||+|||+..             
T Consensus       129 -~~~~~lv~e~~~~~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~Nill~~-------------  192 (357)
T PHA03209        129 -GAITCMVLPHYSSDLYTYLTKR-SRPLPIDQALIIEKQILEGLRYLHAQ-RIIHRDVKTENIFIND-------------  192 (357)
T ss_pred             -CCeeEEEEEccCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEECC-------------
Confidence             4789999999988999988643 34589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (357)
T PHA03209        193 --------------------------------------------------------------------------------  192 (357)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                             ...++|+|||++....  .......||+.|+|||++.+..|+.++|||||||++|+|
T Consensus       193 -----------------------~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~el  249 (357)
T PHA03209        193 -----------------------VDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEM  249 (357)
T ss_pred             -----------------------CCCEEEecCccccccccCcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHH
Confidence                                   4568999999997532  223456789999999999998999999999999999999


Q ss_pred             HhCC-CCCCCCCCCC---CCCChHHHHHHHHHhCCCchhhhcC--CCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          357 ATGD-VLFDPHSGDN---YDRDEDHLALMMELLGMMPRKIAFG--GRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       357 ltG~-~PF~~~~~~~---~~~~~~~l~~i~~~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      +++. ++|.......   ......++..+...++..|..+...  ......++......+    .   +....   ....
T Consensus       250 l~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~---~~~~  319 (357)
T PHA03209        250 LAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLER----Q---PYTRY---PCFQ  319 (357)
T ss_pred             HHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCC----C---ccccc---HHHh
Confidence            9865 4444321110   0112345555666666665543311  001111110000000    0   00000   0000


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      ....+.++.+||.+||++||.+||||.|+|+||||+.
T Consensus       320 ~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~hp~f~~  356 (357)
T PHA03209        320 RVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYPMFAQ  356 (357)
T ss_pred             ccCCCchHHHHHHHHHcCCcccCcCHHHHhcCchhcc
Confidence            1134567789999999999999999999999999984

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=3.6e-44  Score=367.45  Aligned_cols=300  Identities=29%  Similarity=0.462  Sum_probs=229.0

Q ss_pred             CccccccCcEe--eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCC
Q 045988           29 GYHAVRMGDTF--KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        29 ~~~~~~~g~~~--~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h  103 (530)
                      |||||.+|+..  ..++|++.+.||+|+||.||+|.+..+++.||||++.+.   ......+.+|+.+++++      .|
T Consensus         1 ~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h   74 (353)
T cd07850           1 QFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLV------NH   74 (353)
T ss_pred             CceeecccchhhhhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhc------CC
Confidence            69999999833  268999999999999999999999999999999987643   22345667899999998      78


Q ss_pred             cceeEecceeeecC--CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcE
Q 045988          104 KCVVKLLDHFKHSG--PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENV  181 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~--~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NI  181 (530)
                      +||++++++|....  .+..+.|+||||++++|.+.+..    .+++..+..++.||+.||+|||++ ||+||||||+||
T Consensus        75 ~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~-gi~H~dlkp~Ni  149 (353)
T cd07850          75 KNIIGLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQM----DLDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNI  149 (353)
T ss_pred             CCCcceeeeeccCCCccccCcEEEEEeccCCCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHE
Confidence            88999999987432  12346899999998899888752    288999999999999999999997 999999999999


Q ss_pred             EEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 045988          182 LLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGD  261 (530)
Q Consensus       182 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (530)
                      |++.                                                                            
T Consensus       150 l~~~----------------------------------------------------------------------------  153 (353)
T cd07850         150 VVKS----------------------------------------------------------------------------  153 (353)
T ss_pred             EECC----------------------------------------------------------------------------
Confidence            9954                                                                            


Q ss_pred             CcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCC
Q 045988          262 SVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                              ++.++|+|||++......  .....+++.|+|||++.+..
T Consensus       154 ----------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  193 (353)
T cd07850         154 ----------------------------------------DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  193 (353)
T ss_pred             ----------------------------------------CCCEEEccCccceeCCCCCCCCCCcccccccCHHHHhCCC
Confidence                                                    456999999999764332  23456889999999999999


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccc-cccCccccchhcccC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF-NRHGDLRHIRRLRFW  418 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  418 (530)
                      ++.++|||||||++|+|++|..||....      .......+...+|.++.++..........+ ........      .
T Consensus       194 ~~~~~DvwslG~~l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  261 (353)
T cd07850         194 YKENVDIWSVGCIMGEMIRGTVLFPGTD------HIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAG------Y  261 (353)
T ss_pred             CCCchhhHhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCC------c
Confidence            9999999999999999999999996543      456677778888887766543322111111 00000000      0


Q ss_pred             Cchhhhhh------hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          419 PLNKVLIE------KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       419 ~~~~~~~~------~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      ++......      ........++.+.+||.+||++||.+|||+.|+|.||||+.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~  316 (353)
T cd07850         262 SFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINV  316 (353)
T ss_pred             chhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcChhHhh
Confidence            00000000      00012234677899999999999999999999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=2.3e-44  Score=370.25  Aligned_cols=251  Identities=24%  Similarity=0.364  Sum_probs=200.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++++.||+|+||+||+|.+..+++.||||++.+..    .....+.+|+.++.++      +|+||+++++.|.   
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~------~~~~iv~~~~~~~---   71 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEA------DSLWVVKMFYSFQ---   71 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhC------CCCCcceEEEEEe---
Confidence            47999999999999999999999999999999987642    2234567899999888      7888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       +...+||||||| +++|.+++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~-givHrDlKp~NILi~~-----------  136 (363)
T cd05628          72 -DKLNLYLIMEFLPGGDMMTLLMK--KDTLTEEETQFYIAETVLAIDSIHQL-GFIHRDIKPDNLLLDS-----------  136 (363)
T ss_pred             -cCCeEEEEEcCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC-CeEecCCCHHHeEECC-----------
Confidence             457899999999 8899999874  34599999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (363)
T cd05628         137 --------------------------------------------------------------------------------  136 (363)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------------------------------------
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------------------------------------  319 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------------------------------------  319 (530)
                                               ++.++|+|||++......                                     
T Consensus       137 -------------------------~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (363)
T cd05628         137 -------------------------KGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQ  191 (363)
T ss_pred             -------------------------CCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhcccc
Confidence                                     456899999988542110                                     


Q ss_pred             -cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCc
Q 045988          320 -FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRY  398 (530)
Q Consensus       320 -~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  398 (530)
                       ....+||+.|+|||++.+..|+.++|||||||++|+|++|.+||.+.+      .......+.....            
T Consensus       192 ~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~------~~~~~~~i~~~~~------------  253 (363)
T cd05628         192 LAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET------PQETYKKVMNWKE------------  253 (363)
T ss_pred             ccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHHcCcC------------
Confidence             123579999999999999999999999999999999999999996433      1112221111000            


Q ss_pred             ccccccccCccccchhcccCCchhhhhhhccCC--hhcHHHHHHHHhhccCcCCCC---CcCHHHHhcCCCCCCC
Q 045988          399 SRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS--EKDANDMADFLVPILDFVPEK---RPTAAQCLTHPWINVG  468 (530)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dLl~~mL~~dP~~---Rpta~elL~hp~f~~~  468 (530)
                                                  ...++  ...++++++||.+|++ +|.+   ||+++|+++||||+..
T Consensus       254 ----------------------------~~~~p~~~~~s~~~~~li~~l~~-~~~~r~~r~~~~ei~~hp~f~~~  299 (363)
T cd05628         254 ----------------------------TLIFPPEVPISEKAKDLILRFCC-EWEHRIGAPGVEEIKTNPFFEGV  299 (363)
T ss_pred             ----------------------------cccCCCcCCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhCCCCCCCC
Confidence                                        00111  1246789999999876 4554   5899999999999864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=5.5e-44  Score=368.76  Aligned_cols=284  Identities=29%  Similarity=0.461  Sum_probs=219.9

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++.++||+|+||.||+|.+..+++.||||.+....   .....+.+|+.+|+.+      .|+||+++++++......
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~~~~   74 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFF------KHDNVLSALDILQPPHID   74 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhC------CCCCcCCHhheecCCCcc
Confidence            4789999999999999999999999999999876432   2345678899999998      788899999999854211


Q ss_pred             -CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 -GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 -~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                       ...+|+||||++++|.+++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        75 ~~~~~~lv~e~~~~~l~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivH~dlkp~Nili~~-------------  138 (372)
T cd07853          75 PFEEIYVVTELMQSDLHKIIVS--PQPLSSDHVKVFLYQILRGLKYLHSA-GILHRDIKPGNLLVNS-------------  138 (372)
T ss_pred             ccceEEEEeeccccCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChHHEEECC-------------
Confidence             137899999998899888853  34589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (372)
T cd07853         139 --------------------------------------------------------------------------------  138 (372)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACIC  353 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il  353 (530)
                                             ++.++|+|||++.....    .....++|+.|+|||++.+. .|+.++|||||||++
T Consensus       139 -----------------------~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il  195 (372)
T cd07853         139 -----------------------NCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIF  195 (372)
T ss_pred             -----------------------CCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHH
Confidence                                   45799999999975322    23445789999999999875 489999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc-cccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS-RDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |+|++|++||.+.+      ..+++..+...+|.++.......... ..+.         .....  ........+.+..
T Consensus       196 ~el~~g~~pf~~~~------~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~  258 (372)
T cd07853         196 AELLGRRILFQAQS------PIQQLDLITDLLGTPSLEAMRSACEGARAHI---------LRGPH--KPPSLPVLYTLSS  258 (372)
T ss_pred             HHHHcCCCCCCCCC------HHHHHHHHHHHcCCCCHHHHHHhhHHHHHHH---------HhCCC--CCCchHHhcccCC
Confidence            99999999997554      56778888888887765433211100 0000         00000  0001111122334


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ..++++.+||.+||++||.+|||+.|+|+||||...
T Consensus       259 ~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  294 (372)
T cd07853         259 QATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEG  294 (372)
T ss_pred             CCCHHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCC
Confidence            457889999999999999999999999999999874

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.9e-45  Score=365.95  Aligned_cols=242  Identities=26%  Similarity=0.409  Sum_probs=199.3

Q ss_pred             eccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           50 LGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        50 LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ||+|+||.||+|++..+++.||||+++...    .....+.+|+.+|+++      +||||++++++|.    .....|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~----~~~~~~l   70 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQV------NCPFIVPLKFSFQ----SPEKLYL   70 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCcEeceeeEEe----cCCeEEE
Confidence            799999999999999999999999987532    2345567899999988      7889999999998    4578999


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccc
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLT  204 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~  204 (530)
                      ||||+ +++|.+++..  ...+++..+..++.||+.||.|||++ ||+||||||+|||++.                   
T Consensus        71 v~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~HrDlkp~Nili~~-------------------  128 (312)
T cd05585          71 VLAFINGGELFHHLQR--EGRFDLSRARFYTAELLCALENLHKF-NVIYRDLKPENILLDY-------------------  128 (312)
T ss_pred             EEcCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC-CeEeCCCCHHHeEECC-------------------
Confidence            99999 8999998864  34589999999999999999999997 9999999999999954                   


Q ss_pred             ccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 045988          205 KKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK  284 (530)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (530)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (312)
T cd05585         129 --------------------------------------------------------------------------------  128 (312)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCC
Q 045988          285 DCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDV  361 (530)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~  361 (530)
                                       ++.++|+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++|.+
T Consensus       129 -----------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~  191 (312)
T cd05585         129 -----------------QGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLP  191 (312)
T ss_pred             -----------------CCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCC
Confidence                             4579999999986432   12334579999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHH
Q 045988          362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADF  441 (530)
Q Consensus       362 PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL  441 (530)
                      ||....      ......                                          .+......++...++.+.+|
T Consensus       192 pf~~~~------~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~l  223 (312)
T cd05585         192 PFYDEN------VNEMYR------------------------------------------KILQEPLRFPDGFDRDAKDL  223 (312)
T ss_pred             CcCCCC------HHHHHH------------------------------------------HHHcCCCCCCCcCCHHHHHH
Confidence            996432      111111                                          11111223445567889999


Q ss_pred             HhhccCcCCCCCc---CHHHHhcCCCCCCC
Q 045988          442 LVPILDFVPEKRP---TAAQCLTHPWINVG  468 (530)
Q Consensus       442 l~~mL~~dP~~Rp---ta~elL~hp~f~~~  468 (530)
                      |.+||..||.+||   ++.|+|.||||...
T Consensus       224 i~~~L~~dp~~R~~~~~~~e~l~hp~~~~~  253 (312)
T cd05585         224 LIGLLSRDPTRRLGYNGAQEIKNHPFFSQL  253 (312)
T ss_pred             HHHHcCCCHHHcCCCCCHHHHHcCCCcCCC
Confidence            9999999999997   58999999999875

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=6e-44  Score=364.35  Aligned_cols=284  Identities=29%  Similarity=0.450  Sum_probs=220.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.+.||+|+||+||+|.+..+++.||||++....   .....+.+|+.+|+++      .||||++++++|....
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~   87 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHM------KHENVIGLLDVFTPAT   87 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhc------CCCchhhhhhhhcccc
Confidence            368999999999999999999999999999999887532   2234567899999999      7888999999886432


Q ss_pred             --CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          118 --PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       118 --~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        ......|++|++++++|..++.   ...+++..++.++.||+.||+|||++ ||+||||||+|||++.          
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrdikp~Nil~~~----------  153 (343)
T cd07878          88 SIENFNEVYLVTNLMGADLNNIVK---CQKLSDEHVQFLIYQLLRGLKYIHSA-GIIHRDLKPSNVAVNE----------  153 (343)
T ss_pred             cccccCcEEEEeecCCCCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC-CeecccCChhhEEECC----------
Confidence              1225689999999999988775   23499999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (343)
T cd07878         154 --------------------------------------------------------------------------------  153 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                                ++.+||+|||++..........+||+.|+|||++.+ ..++.++|||||||++|
T Consensus       154 --------------------------~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  207 (343)
T cd07878         154 --------------------------DCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA  207 (343)
T ss_pred             --------------------------CCCEEEcCCccceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHHHH
Confidence                                      457999999999876666667789999999999987 46899999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--cccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|++|..||.+..      ..+.+..+....|..+..........  ..+..         .....+.. ...   ....
T Consensus       208 el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~---~~~~  268 (343)
T cd07878         208 ELLKGKALFPGND------YIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQ---------SLPHMPQQ-DLK---KIFR  268 (343)
T ss_pred             HHHHCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhh---------ccccccch-hHH---Hhcc
Confidence            9999999996533      45667777777777665543211100  00000         00000000 000   0112


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ..++.+.+||.+||++||.+|||+.|+|.||||....
T Consensus       269 ~~~~~~~~li~~mL~~dp~~R~s~~ell~hp~~~~~~  305 (343)
T cd07878         269 GANPLAIDLLEKMLVLDSDKRISASEALAHPYFSQYH  305 (343)
T ss_pred             CCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhccC
Confidence            3456788999999999999999999999999998643

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-44  Score=371.63  Aligned_cols=253  Identities=24%  Similarity=0.381  Sum_probs=202.4

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.++||+|+||+||+|++..+++.||||++....    .....+.+|+.+|+.+      +||||++++++|.   
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l------~h~~iv~~~~~~~---   71 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEA------DNPWVVKLYYSFQ---   71 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCcceEEEEE---
Confidence            47999999999999999999999999999999987642    2334567899999998      6889999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .+.++||||||| +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~-~ivH~Dlkp~NIl~~~-----------  136 (364)
T cd05599          72 -DENYLYLIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIHKL-GYIHRDIKPDNLLLDA-----------  136 (364)
T ss_pred             -cCCeEEEEECCCCCcHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeEECC-----------
Confidence             557999999999 88999988643  3599999999999999999999997 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (364)
T cd05599         137 --------------------------------------------------------------------------------  136 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------------------------------------
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------------------------------------  319 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------------------------------------  319 (530)
                                               ++.++|+|||++......                                     
T Consensus       137 -------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (364)
T cd05599         137 -------------------------KGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRN  191 (364)
T ss_pred             -------------------------CCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhc
Confidence                                     456899999987532110                                     


Q ss_pred             ----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcC
Q 045988          320 ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFG  395 (530)
Q Consensus       320 ----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  395 (530)
                          ....+||+.|+|||++.+..|+.++|||||||++|+|++|.+||...+      .....   ..+.....      
T Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~------~~~~~---~~i~~~~~------  256 (364)
T cd05599         192 RRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDN------PQETY---RKIINWKE------  256 (364)
T ss_pred             ccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCC------HHHHH---HHHHcCCC------
Confidence                113469999999999999899999999999999999999999996432      11111   11110000      


Q ss_pred             CCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcC---HHHHhcCCCCCCC
Q 045988          396 GRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPT---AAQCLTHPWINVG  468 (530)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpt---a~elL~hp~f~~~  468 (530)
                         .               .           ........++++.+||.+||. +|.+|++   +.|+|+||||+..
T Consensus       257 ---~---------------~-----------~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~  302 (364)
T cd05599         257 ---T---------------L-----------QFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGV  302 (364)
T ss_pred             ---c---------------c-----------CCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCC
Confidence               0               0           000011346789999999997 9999998   9999999999864

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.1e-45  Score=371.28  Aligned_cols=253  Identities=26%  Similarity=0.439  Sum_probs=205.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|.+.+.||+|+||+||+|++..+++.||||+++...    .....+.+|+.++..+      .|+||++++++|.   
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~---   71 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADA------DSPWIVKLYYSFQ---   71 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhc------CCCCccchhhhee---
Confidence            47999999999999999999999999999999987642    3345677899999988      6888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .+.++|+||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+||||+.           
T Consensus        72 -~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-giiH~Dlkp~NIll~~-----------  136 (350)
T cd05573          72 -DEEHLYLVMEYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHKL-GFIHRDIKPDNILIDA-----------  136 (350)
T ss_pred             -cCCeEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEECC-----------
Confidence             457899999999 89999998754  4599999999999999999999996 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (350)
T cd05573         137 --------------------------------------------------------------------------------  136 (350)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--------------------------------cCCCC
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--------------------------------FTNDI  324 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--------------------------------~~~~~  324 (530)
                                               ++.++|+|||++......                                ....+
T Consensus       137 -------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (350)
T cd05573         137 -------------------------DGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTV  191 (350)
T ss_pred             -------------------------CCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccc
Confidence                                     456899999998653221                                23457


Q ss_pred             CCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccc
Q 045988          325 QTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN  404 (530)
Q Consensus       325 gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  404 (530)
                      ||+.|+|||++.+..++.++|||||||++|+|++|.+||....      .......+......                 
T Consensus       192 gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~------~~~~~~~i~~~~~~-----------------  248 (350)
T cd05573         192 GTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDT------LQETYNKIINWKES-----------------  248 (350)
T ss_pred             cCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCC------HHHHHHHHhccCCc-----------------
Confidence            8999999999999999999999999999999999999996433      11111111110000                 


Q ss_pred             ccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcC-HHHHhcCCCCCCC
Q 045988          405 RHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPT-AAQCLTHPWINVG  468 (530)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpt-a~elL~hp~f~~~  468 (530)
                                           .........++++.+||.+||. ||.+|++ +.++|+||||+..
T Consensus       249 ---------------------~~~p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~  291 (350)
T cd05573         249 ---------------------LRFPPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGI  291 (350)
T ss_pred             ---------------------ccCCCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCC
Confidence                                 0001111247889999999998 9999999 9999999999864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=1.2e-44  Score=367.29  Aligned_cols=244  Identities=27%  Similarity=0.404  Sum_probs=200.1

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||.||+|.+..+++.||+|++.+..    .....+.+|+++++.+      .||||+++++.+.    ....+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~----~~~~~   70 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNT------RHPFLTSLKYSFQ----TKDRL   70 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCcceEEEEE----cCCEE
Confidence            46999999999999999999999999987542    2345667899999888      7888999999998    45789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      ||||||+ +++|...+..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        71 ~lv~Ey~~~g~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDikp~NIll~~-----------------  130 (328)
T cd05593          71 CFVMEYVNGGELFFHLSR--ERVFSEDRTRFYGAEIVSALDYLHSG-KIVYRDLKLENLMLDK-----------------  130 (328)
T ss_pred             EEEEeCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC-CeEecccCHHHeEECC-----------------
Confidence            9999999 8899888764  34589999999999999999999997 9999999999999954                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (328)
T cd05593         131 --------------------------------------------------------------------------------  130 (328)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       131 -------------------~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG  191 (328)
T cd05593         131 -------------------DGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  191 (328)
T ss_pred             -------------------CCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhC
Confidence                               4579999999986432   223345799999999999988999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||....      .......                                          +......++...+.++.
T Consensus       192 ~~Pf~~~~------~~~~~~~------------------------------------------~~~~~~~~p~~~~~~~~  223 (328)
T cd05593         192 RLPFYNQD------HEKLFEL------------------------------------------ILMEDIKFPRTLSADAK  223 (328)
T ss_pred             CCCCCCCC------HHHHHHH------------------------------------------hccCCccCCCCCCHHHH
Confidence            99996432      1111111                                          11112233445678899


Q ss_pred             HHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      +||.+||..||.+|+     ++.|+++||||...
T Consensus       224 ~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~  257 (328)
T cd05593         224 SLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGV  257 (328)
T ss_pred             HHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence            999999999999997     89999999999763

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.4e-43  Score=372.01  Aligned_cols=298  Identities=23%  Similarity=0.317  Sum_probs=214.9

Q ss_pred             CCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCccee
Q 045988           28 GGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVV  107 (530)
Q Consensus        28 ~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv  107 (530)
                      |...|..++..+...+|.+.+.||+|+||.||+|.+..+++.||||...     .....+|+++|++|      +|+|||
T Consensus       155 g~~~~~~~~~~~~~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~-----~~~~~~E~~iL~~L------~HpnIv  223 (461)
T PHA03211        155 GCKPPSEVAKVVAGLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW-----YASSVHEARLLRRL------SHPAVL  223 (461)
T ss_pred             CCCCccchhcccccCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc-----ccCHHHHHHHHHHC------CCCCCC
Confidence            3344455556566778999999999999999999999999999999633     23456899999999      788899


Q ss_pred             EecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          108 KLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       108 ~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      ++++++..    +...|||||++.++|..++... ...+++..++.|+.||+.||.|||++ |||||||||+||||+.  
T Consensus       224 ~l~~~~~~----~~~~~lv~e~~~~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~yLH~~-gIvHrDLKP~NILl~~--  295 (461)
T PHA03211        224 ALLDVRVV----GGLTCLVLPKYRSDLYTYLGAR-LRPLGLAQVTAVARQLLSAIDYIHGE-GIIHRDIKTENVLVNG--  295 (461)
T ss_pred             cEEEEEEE----CCEEEEEEEccCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CEEECcCCHHHEEECC--
Confidence            99999884    4689999999988999988643 23589999999999999999999997 9999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       296 --------------------------------------------------------------------------------  295 (461)
T PHA03211        296 --------------------------------------------------------------------------------  295 (461)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCC
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYST  342 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~  342 (530)
                                                        ...++|+|||+++.....     .....||+.|+|||++.+..++.
T Consensus       296 ----------------------------------~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~  341 (461)
T PHA03211        296 ----------------------------------PEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTP  341 (461)
T ss_pred             ----------------------------------CCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCc
Confidence                                              456899999999754322     22356999999999999999999


Q ss_pred             cchhHHHHHHHHHHHhCCCCCCCCC-CCCCCCChHHHHHHHHHhCCCchhhhcCC--CcccccccccCccccchhcccCC
Q 045988          343 PADLWSFACICFELATGDVLFDPHS-GDNYDRDEDHLALMMELLGMMPRKIAFGG--RYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       343 ~~DiWSlG~il~elltG~~PF~~~~-~~~~~~~~~~l~~i~~~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      ++|||||||+||||++|..|+-... .........++..++...+.....+....  +....+......       ...+
T Consensus       342 ~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~  414 (461)
T PHA03211        342 SVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAAR-------NRRP  414 (461)
T ss_pred             hHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhc-------ccCC
Confidence            9999999999999999886543322 22222234455555554443221111000  000000000000       0000


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                        ......+......+.++.+||.+||++||.+|||+.|+|+||||+.
T Consensus       415 --~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        415 --AYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             --ccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhCcccCC
Confidence              0000000000123567899999999999999999999999999974

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=4.4e-44  Score=370.53  Aligned_cols=253  Identities=24%  Similarity=0.357  Sum_probs=199.6

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .|+++++||+|+||+||+|++..+++.||||++....    .....+.+|+.+++++      .|+||++++++|.    
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l------~h~~iv~l~~~~~----   71 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEA------DNEWVVKLYYSFQ----   71 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhc------CCCCeeeeEEEEe----
Confidence            6999999999999999999999999999999987643    2345677899999998      7888999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      +..++|+||||| +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+||||+.            
T Consensus        72 ~~~~~~lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~~LH~~-givHrDlKp~Nili~~------------  136 (381)
T cd05626          72 DKDNLYFVMDYIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVHKM-GFIHRDIKPDNILIDL------------  136 (381)
T ss_pred             cCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCcHHHEEECC------------
Confidence            457899999999 88999988643  4589999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (381)
T cd05626         137 --------------------------------------------------------------------------------  136 (381)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---------------------------------------
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---------------------------------------  318 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---------------------------------------  318 (530)
                                              .+.++|+|||++.....                                       
T Consensus       137 ------------------------~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (381)
T cd05626         137 ------------------------DGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTL  192 (381)
T ss_pred             ------------------------CCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchh
Confidence                                    45689999998642100                                       


Q ss_pred             -----------ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCC
Q 045988          319 -----------QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM  387 (530)
Q Consensus       319 -----------~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~  387 (530)
                                 .....+||+.|+|||++.+..|+.++|||||||++|+|++|.+||....      .......+......
T Consensus       193 ~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~------~~~~~~~i~~~~~~  266 (381)
T cd05626         193 EQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPT------PTETQLKVINWENT  266 (381)
T ss_pred             hccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCC------HHHHHHHHHccccc
Confidence                       0123579999999999999899999999999999999999999996432      11111111100000


Q ss_pred             CchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCc--CCCCCcCHHHHhcCCCC
Q 045988          388 MPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDF--VPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       388 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~--dP~~Rpta~elL~hp~f  465 (530)
                      .                                      ........++++.+||.+||+.  +|..|+++.++++||||
T Consensus       267 ~--------------------------------------~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f  308 (381)
T cd05626         267 L--------------------------------------HIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFF  308 (381)
T ss_pred             c--------------------------------------CCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCccc
Confidence            0                                      0011123568899999996655  44559999999999999


Q ss_pred             CCC
Q 045988          466 NVG  468 (530)
Q Consensus       466 ~~~  468 (530)
                      +..
T Consensus       309 ~~~  311 (381)
T cd05626         309 SEV  311 (381)
T ss_pred             CCC
Confidence            864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=7.3e-44  Score=361.97  Aligned_cols=291  Identities=22%  Similarity=0.320  Sum_probs=211.6

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      |..++|++++.||+|+||.||+|++..++..||+|++....  .....+.+|+++|+++      +||||+++++++.. 
T Consensus         2 l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~-   74 (331)
T cd06649           2 LKDDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC------NSPYIVGFYGAFYS-   74 (331)
T ss_pred             CCcccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHC------CCCCCCeEEEEEEE-
Confidence            34689999999999999999999999999999999887542  2346788999999999      78889999999984 


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                         +..+++||||+ +++|.+++...  ..+++..+..++.|++.||.|||++.+|+||||||+|||++.          
T Consensus        75 ---~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~----------  139 (331)
T cd06649          75 ---DGEISICMEHMDGGSLDQVLKEA--KRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNS----------  139 (331)
T ss_pred             ---CCEEEEEeecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcC----------
Confidence               46899999999 88999998743  348999999999999999999998536999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (331)
T cd06649         140 --------------------------------------------------------------------------------  139 (331)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                                ++.++|+|||++..... ......||+.|+|||++.+..++.++|||||||++|
T Consensus       140 --------------------------~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~  193 (331)
T cd06649         140 --------------------------RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV  193 (331)
T ss_pred             --------------------------CCcEEEccCcccccccccccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHH
Confidence                                      45699999999865432 234557999999999999989999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhh----cCCC-ccc---ccccccCccccchhcccCCchh-hhh
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIA----FGGR-YSR---DFFNRHGDLRHIRRLRFWPLNK-VLI  425 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~----~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~  425 (530)
                      +|++|+.||....       ..   .+...++.......    .... ...   ......+... ........+.. +..
T Consensus       194 el~tg~~p~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  262 (331)
T cd06649         194 ELAIGRYPIPPPD-------AK---ELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDS-RPAMAIFELLDYIVN  262 (331)
T ss_pred             HHHhCCCCCCCCC-------HH---HHHHHhcccccccccCCccccCccccccccccccccccc-ccchhHHHHHHHHHh
Confidence            9999999996432       11   12223332111000    0000 000   0000000000 00000000000 000


Q ss_pred             hh-ccC-ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          426 EK-YDF-SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       426 ~~-~~~-~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .. ... ....++++++||.+||.+||++|||+.|+|+||||+..
T Consensus       263 ~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~  307 (331)
T cd06649         263 EPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRS  307 (331)
T ss_pred             CCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcChHHhhc
Confidence            00 011 12356789999999999999999999999999999854

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.1e-43  Score=368.87  Aligned_cols=286  Identities=23%  Similarity=0.333  Sum_probs=217.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeC--CCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDT--QTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~--~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ..+|.++++||+|+||.||+|...  .+++.||+|.+....    ...+|+++|++|      +|||||+++++|.    
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~----~~~~E~~il~~l------~h~~iv~~~~~~~----  156 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGK----TPGREIDILKTI------SHRAIINLIHAYR----  156 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccc----cHHHHHHHHHhc------CCCCccceeeeEe----
Confidence            568999999999999999999754  356889999876542    346899999999      7888999999998    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      .....|+|||+++++|.+++.  ....+++..++.|+.||+.||.|||++ |||||||||+|||++.             
T Consensus       157 ~~~~~~lv~e~~~~~l~~~l~--~~~~l~~~~~~~i~~ql~~aL~~LH~~-givHrDlkp~Nill~~-------------  220 (392)
T PHA03207        157 WKSTVCMVMPKYKCDLFTYVD--RSGPLPLEQAITIQRRLLEALAYLHGR-GIIHRDVKTENIFLDE-------------  220 (392)
T ss_pred             eCCEEEEEehhcCCCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEcC-------------
Confidence            447899999999999999884  334599999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (392)
T PHA03207        221 --------------------------------------------------------------------------------  220 (392)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                             .+.++|+|||+++.....     ....+||+.|+|||++.+..|+.++|||||||++
T Consensus       221 -----------------------~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil  277 (392)
T PHA03207        221 -----------------------PENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVL  277 (392)
T ss_pred             -----------------------CCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHH
Confidence                                   456999999999654322     2345799999999999998999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|..||.+....   .....+..+.+.++..|..+.......  +......+.......+ .....     .....
T Consensus       278 ~el~~g~~pf~~~~~~---~~~~~l~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~-----~~~~~  346 (392)
T PHA03207        278 FEMSVKNVTLFGKQVK---SSSSQLRSIIRCMQVHPLEFPQNGSTN--LCKHFKQYAIVLRPPY-TIPPV-----IRKYG  346 (392)
T ss_pred             HHHHHCCCCCCCCCCC---CcHHHHHHHHHHhccCccccCCccchh--HHHHHHhhcccccCCc-cccch-----hhccC
Confidence            9999999999765432   256778888888876665432111100  0000000000000000 00000     00112


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .+.++.+||.+||++||.+|||+.|+|+||||+..|.
T Consensus       347 ~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~~~~  383 (392)
T PHA03207        347 MHMDVEYLIAKMLTFDQEFRPSAQDILSLPLFTKEPI  383 (392)
T ss_pred             cchhHHHHHHHHhccChhhCCCHHHHhhCchhhccch
Confidence            3567889999999999999999999999999997664

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=2.4e-44  Score=364.38  Aligned_cols=250  Identities=23%  Similarity=0.329  Sum_probs=203.1

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +|++++.||+|+||.||+|.+..+++.||||++.+..    ...+.+..|++++..+.     .|++|++++++|.    
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~~~~~~----   71 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPG-----KPPFLTQLHSCFQ----   71 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcC-----CCCceeeeEEEEE----
Confidence            5899999999999999999999999999999987542    23456677888888774     4556889999988    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....+|+||||+ +++|..++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        72 ~~~~~~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dlkp~Nill~~------------  136 (324)
T cd05587          72 TMDRLYFVMEYVNGGDLMYHIQQV--GKFKEPHAVFYAAEIAIGLFFLHSK-GIIYRDLKLDNVMLDA------------  136 (324)
T ss_pred             cCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEEcC------------
Confidence            457899999999 89999888643  3489999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (324)
T cd05587         137 --------------------------------------------------------------------------------  136 (324)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                              ++.++|+|||++...   .......+||+.|+|||++.+..++.++|||||||++|
T Consensus       137 ------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~  192 (324)
T cd05587         137 ------------------------EGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLY  192 (324)
T ss_pred             ------------------------CCCEEEeecCcceecCCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHH
Confidence                                    456999999998642   12233457999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|..||.+..      .......+.                                          .....++...
T Consensus       193 elltG~~pf~~~~------~~~~~~~i~------------------------------------------~~~~~~~~~~  224 (324)
T cd05587         193 EMLAGQPPFDGED------EDELFQSIM------------------------------------------EHNVSYPKSL  224 (324)
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHH------------------------------------------cCCCCCCCCC
Confidence            9999999996432      111111111                                          1112233455


Q ss_pred             HHHHHHHHhhccCcCCCCCcCH-----HHHhcCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTA-----AQCLTHPWINVG  468 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta-----~elL~hp~f~~~  468 (530)
                      +..+.+||.+||..||.+|+++     .++++||||...
T Consensus       225 ~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~  263 (324)
T cd05587         225 SKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRI  263 (324)
T ss_pred             CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence            6789999999999999999986     899999999864

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=3.5e-44  Score=371.55  Aligned_cols=252  Identities=24%  Similarity=0.379  Sum_probs=200.5

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +|.++++||+|+||+||+|++..+++.||||++.+..    .....+.+|+.+++++      +|+|||++++.|.    
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~------~h~~iv~~~~~~~----   71 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEA------DNEWVVRLYYSFQ----   71 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhC------CCCcCCeEEEEEE----
Confidence            6999999999999999999999999999999987643    2345677899999998      7888999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ++.++||||||| +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        72 ~~~~~~lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~al~~lH~~-~ivHrDlKp~NILl~~------------  136 (382)
T cd05625          72 DKDNLYFVMDYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVHKM-GFIHRDIKPDNILIDR------------  136 (382)
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEECC------------
Confidence            457899999999 88999988643  4589999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (382)
T cd05625         137 --------------------------------------------------------------------------------  136 (382)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc----------------------------------------
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY----------------------------------------  317 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~----------------------------------------  317 (530)
                                              ++.++|+|||++....                                        
T Consensus       137 ------------------------~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (382)
T cd05625         137 ------------------------DGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPL  192 (382)
T ss_pred             ------------------------CCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccch
Confidence                                    4568999999863210                                        


Q ss_pred             ----------cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCC
Q 045988          318 ----------KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM  387 (530)
Q Consensus       318 ----------~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~  387 (530)
                                ......+||+.|+|||++.+..|+.++|||||||++|+|++|.+||.+.+      .......+......
T Consensus       193 ~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~------~~~~~~~i~~~~~~  266 (382)
T cd05625         193 ERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQT------PLETQMKVINWQTS  266 (382)
T ss_pred             hhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCC------HHHHHHHHHccCCC
Confidence                      00123479999999999999999999999999999999999999996433      11111111100000


Q ss_pred             CchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcC---HHHHhcCCC
Q 045988          388 MPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPT---AAQCLTHPW  464 (530)
Q Consensus       388 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpt---a~elL~hp~  464 (530)
                                                            .........++++.+||.+|+ .||.+|++   +.|+++|||
T Consensus       267 --------------------------------------~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~  307 (382)
T cd05625         267 --------------------------------------LHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAHPF  307 (382)
T ss_pred             --------------------------------------cCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCC
Confidence                                                  000111235688999999976 59999997   999999999


Q ss_pred             CCCC
Q 045988          465 INVG  468 (530)
Q Consensus       465 f~~~  468 (530)
                      |+..
T Consensus       308 f~~~  311 (382)
T cd05625         308 FKTI  311 (382)
T ss_pred             cCCc
Confidence            9864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-44  Score=371.29  Aligned_cols=251  Identities=23%  Similarity=0.361  Sum_probs=199.7

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|.++++||+|+||+||+|.+..+++.||||++.+..    .....+.+|+++++++      +||||++++++|.   
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l------~hp~iv~~~~~~~---   71 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAES------DSPWVVSLYYSFQ---   71 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhC------CCCCcceEEEEEE---
Confidence            47999999999999999999999999999999876542    2234567899999888      7889999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       +..++||||||+ +++|.+++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~E~~~gg~L~~~l~~--~~~~~~~~~~~~~~ql~~aL~~LH~~-givHrDlkp~NIll~~-----------  136 (377)
T cd05629          72 -DAQYLYLIMEFLPGGDLMTMLIK--YDTFSEDVTRFYMAECVLAIEAVHKL-GFIHRDIKPDNILIDR-----------  136 (377)
T ss_pred             -cCCeeEEEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEECC-----------
Confidence             457999999999 8999998864  34589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (377)
T cd05629         137 --------------------------------------------------------------------------------  136 (377)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--------------------------------------
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--------------------------------------  318 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--------------------------------------  318 (530)
                                               ++.++|+|||++.....                                      
T Consensus       137 -------------------------~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (377)
T cd05629         137 -------------------------GGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSK  191 (377)
T ss_pred             -------------------------CCCEEEeecccccccccccccccccccccccccccccccccccccccccccccch
Confidence                                     45688888888742100                                      


Q ss_pred             ------------ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhC
Q 045988          319 ------------QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG  386 (530)
Q Consensus       319 ------------~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g  386 (530)
                                  .....+||+.|+|||++.+..|+.++|||||||++|+|++|.+||....      .......+.....
T Consensus       192 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~------~~~~~~~i~~~~~  265 (377)
T cd05629         192 DQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSEN------SHETYRKIINWRE  265 (377)
T ss_pred             hhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCC------HHHHHHHHHccCC
Confidence                        0012479999999999999899999999999999999999999996433      1122222211000


Q ss_pred             CCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC--hhcHHHHHHHHhhccCcCCCCC---cCHHHHhc
Q 045988          387 MMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS--EKDANDMADFLVPILDFVPEKR---PTAAQCLT  461 (530)
Q Consensus       387 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dLl~~mL~~dP~~R---pta~elL~  461 (530)
                                                              ...++  ...+.++.+||.+||+ +|.+|   +++.|+|.
T Consensus       266 ----------------------------------------~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~  304 (377)
T cd05629         266 ----------------------------------------TLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKS  304 (377)
T ss_pred             ----------------------------------------ccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhc
Confidence                                                    00111  1346789999999998 77775   59999999


Q ss_pred             CCCCCCC
Q 045988          462 HPWINVG  468 (530)
Q Consensus       462 hp~f~~~  468 (530)
                      ||||+.-
T Consensus       305 hp~~~~~  311 (377)
T cd05629         305 HPFFRGV  311 (377)
T ss_pred             CCCcCCC
Confidence            9999853

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=2.7e-44  Score=364.02  Aligned_cols=250  Identities=24%  Similarity=0.386  Sum_probs=202.9

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      |++.+.||+|+||.||+|.+..+++.||||++++..    ...+.+.+|++++..+...   .||||++++++|.    .
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l---~hp~i~~~~~~~~----~   73 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSE---RHPFLVNLFACFQ----T   73 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcccc---CCCChhceeeEEE----c
Confidence            789999999999999999999999999999987542    2235567787777655322   7999999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +..+|+||||+ +++|...+..   ..+++..+..++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        74 ~~~~~lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~-~ivHrdlkp~Nill~~-------------  136 (324)
T cd05589          74 EDHVCFVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHEN-KIVYRDLKLDNLLLDT-------------  136 (324)
T ss_pred             CCEEEEEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CeEecCCCHHHeEECC-------------
Confidence            57899999999 8888877742   3599999999999999999999997 9999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (324)
T cd05589         137 --------------------------------------------------------------------------------  136 (324)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             ++.+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+
T Consensus       137 -----------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~e  193 (324)
T cd05589         137 -----------------------EGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYE  193 (324)
T ss_pred             -----------------------CCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHH
Confidence                                   4579999999986421   22345679999999999999889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||.+..      .......+                                          ......++...+
T Consensus       194 l~~G~~pf~~~~------~~~~~~~i------------------------------------------~~~~~~~p~~~~  225 (324)
T cd05589         194 MLVGESPFPGDD------EEEVFDSI------------------------------------------VNDEVRYPRFLS  225 (324)
T ss_pred             HHhCCCCCCCCC------HHHHHHHH------------------------------------------HhCCCCCCCCCC
Confidence            999999996432      11111111                                          111122334557


Q ss_pred             HHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      ..+.+||.+||+.||.+||     ++.++++||||+..
T Consensus       226 ~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~  263 (324)
T cd05589         226 REAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDI  263 (324)
T ss_pred             HHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCC
Confidence            8899999999999999999     79999999999864

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=1.8e-44  Score=364.64  Aligned_cols=245  Identities=26%  Similarity=0.384  Sum_probs=199.3

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||+||+|.++.+++.||||++.+..    ........|+.++..+.     +||||++++++|.    ....+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~h~~iv~~~~~~~----~~~~~   71 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLAR-----NHPFLTQLYCCFQ----TPDRL   71 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcc-----CCCchhceeeEEE----cCCEE
Confidence            47999999999999999999999999987542    23455667888887663     6899999999998    45789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      |+||||+ +++|..++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        72 ~iv~Ey~~~g~L~~~i~~~--~~l~~~~~~~~~~ql~~~L~~lH~~-~ivH~dlkp~NIli~~-----------------  131 (320)
T cd05590          72 FFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEITSALMFLHDK-GIIYRDLKLDNVLLDH-----------------  131 (320)
T ss_pred             EEEEcCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCCHHHeEECC-----------------
Confidence            9999999 88998888643  4599999999999999999999997 9999999999999955                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (320)
T cd05590         132 --------------------------------------------------------------------------------  131 (320)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++....   .......||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       132 -------------------~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g  192 (320)
T cd05590         132 -------------------EGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCG  192 (320)
T ss_pred             -------------------CCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhC
Confidence                               4579999999986421   223445799999999999998899999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||.+..      .......+.                                          .....++...+.++.
T Consensus       193 ~~Pf~~~~------~~~~~~~i~------------------------------------------~~~~~~~~~~~~~~~  224 (320)
T cd05590         193 HAPFEAEN------EDDLFEAIL------------------------------------------NDEVVYPTWLSQDAV  224 (320)
T ss_pred             CCCCCCCC------HHHHHHHHh------------------------------------------cCCCCCCCCCCHHHH
Confidence            99996432      111111111                                          111123334567899


Q ss_pred             HHHhhccCcCCCCCcCH------HHHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRPTA------AQCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rpta------~elL~hp~f~~~  468 (530)
                      +||.+||+.||.+|+++      +++++||||+..
T Consensus       225 ~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~  259 (320)
T cd05590         225 DILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKEL  259 (320)
T ss_pred             HHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCCC
Confidence            99999999999999998      999999999763

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=2.1e-44  Score=364.64  Aligned_cols=245  Identities=24%  Similarity=0.384  Sum_probs=200.2

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||.||+|++..+|+.||+|+++...    .....+.+|+++++.+      .||||+++++.|.    ....+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~i~~~~~~~~----~~~~~   70 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT------RHPFLTALKYAFQ----THDRL   70 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC------CCCCCcceeeEEe----cCCEE
Confidence            47999999999999999999999999987542    2234567899999988      7888999999998    45789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      ||||||+ +++|..++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        71 ~lv~E~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~-----------------  130 (323)
T cd05595          71 CFVMEYANGGELFFHLSR--ERVFTEERARFYGAEIVSALEYLHSR-DVVYRDIKLENLMLDK-----------------  130 (323)
T ss_pred             EEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHEEEcC-----------------
Confidence            9999999 8899888764  33589999999999999999999997 9999999999999955                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (323)
T cd05595         131 --------------------------------------------------------------------------------  130 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++....   .......||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       131 -------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g  191 (323)
T cd05595         131 -------------------DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  191 (323)
T ss_pred             -------------------CCCEEecccHHhccccCCCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhC
Confidence                               4579999999986422   123345799999999999998999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||....      .......+                                          ......++...++++.
T Consensus       192 ~~Pf~~~~------~~~~~~~~------------------------------------------~~~~~~~p~~~~~~~~  223 (323)
T cd05595         192 RLPFYNQD------HERLFELI------------------------------------------LMEEIRFPRTLSPEAK  223 (323)
T ss_pred             CCCCCCCC------HHHHHHHH------------------------------------------hcCCCCCCCCCCHHHH
Confidence            99996432      11111111                                          1111223445678899


Q ss_pred             HHHhhccCcCCCCCc-----CHHHHhcCCCCCCCC
Q 045988          440 DFLVPILDFVPEKRP-----TAAQCLTHPWINVGP  469 (530)
Q Consensus       440 dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~~  469 (530)
                      +||.+||..||.+|+     ++.++++||||....
T Consensus       224 ~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~~  258 (323)
T cd05595         224 SLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSIN  258 (323)
T ss_pred             HHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCCCC
Confidence            999999999999998     899999999998643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=3e-44  Score=379.64  Aligned_cols=255  Identities=28%  Similarity=0.419  Sum_probs=208.2

Q ss_pred             ccCcEeeC--CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEe-cccccchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           34 RMGDTFKN--GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQ-KSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        34 ~~g~~~~~--~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~-~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      ..|.+|..  .+++|.+.|.+|||+.||+|.+...|..||+|.+ ..+....+.+.+||.+|++|.     .|+|||.++
T Consensus        27 ~~G~~~~Vg~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~-----gh~nIV~yi  101 (738)
T KOG1989|consen   27 FVGQTFTVGSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLS-----GHKNIVSYI  101 (738)
T ss_pred             CCceEEEECCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhc-----CCCceeeEe
Confidence            34555543  4577899999999999999999988899999954 345556788899999999996     799999999


Q ss_pred             ce-eeec-CCC-CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--ceeccCCCCcEEEe
Q 045988          111 DH-FKHS-GPN-GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELS--IIHTDLKPENVLLM  184 (530)
Q Consensus       111 ~~-~~~~-~~~-~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~g--IvHrDIKp~NILl~  184 (530)
                      |. .... +.. ...++|.|||| ++.|.++|+.+...+|++.+++.||+|+++||++||.. .  |||||||-|||||.
T Consensus       102 dss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls  180 (738)
T KOG1989|consen  102 DSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLS  180 (738)
T ss_pred             ccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEc
Confidence            93 3222 223 36789999999 69999999987777899999999999999999999984 6  99999999999996


Q ss_pred             eccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 045988          185 SMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVE  264 (530)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (530)
                      .                                                                               
T Consensus       181 ~-------------------------------------------------------------------------------  181 (738)
T KOG1989|consen  181 A-------------------------------------------------------------------------------  181 (738)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            5                                                                               


Q ss_pred             cccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc------------CCCCCCCCccCC
Q 045988          265 DQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF------------TNDIQTRQYRCP  332 (530)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~------------~~~~gt~~y~aP  332 (530)
                                                           ++.+||||||.|+......            -....|+.|+||
T Consensus       182 -------------------------------------~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsP  224 (738)
T KOG1989|consen  182 -------------------------------------DGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSP  224 (738)
T ss_pred             -------------------------------------CCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccCh
Confidence                                                 5679999999997532221            112459999999


Q ss_pred             hhhc---CCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcc
Q 045988          333 EVLL---GSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL  409 (530)
Q Consensus       333 E~l~---~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  409 (530)
                      |++.   +.+.+.|+|||+|||+||-|+....||....                                          
T Consensus       225 EMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg------------------------------------------  262 (738)
T KOG1989|consen  225 EMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG------------------------------------------  262 (738)
T ss_pred             HHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc------------------------------------------
Confidence            9975   6678999999999999999999999996432                                          


Q ss_pred             ccchhcccCCchhhhhhhccCCh--hcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          410 RHIRRLRFWPLNKVLIEKYDFSE--KDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                ...|+..++.+|.  .++..+.+||+.||+.||.+||++-|++.+
T Consensus       263 ----------~laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~  307 (738)
T KOG1989|consen  263 ----------KLAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEE  307 (738)
T ss_pred             ----------ceeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHH
Confidence                      1223444454544  678999999999999999999999998864

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5.1e-45  Score=365.74  Aligned_cols=252  Identities=27%  Similarity=0.445  Sum_probs=216.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|.+++++|+|+||.+++++++..++.|+||.+....   ...+....|+.+++++      .|||||.+.+.|... 
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~------~hP~iv~y~ds~~~~-   75 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKL------LHPNIVEYKDSFEED-   75 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhc------cCCCeeeeccchhcC-
Confidence            368999999999999999999999999999999877543   3455778999999998      788999999999963 


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        +..+||||+|| ||+|.+.|...+...++++.+..|+.||+.||.|||++ +|+|||||+.|||++.           
T Consensus        76 --~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~-~iLHRDlK~~Nifltk-----------  141 (426)
T KOG0589|consen   76 --GQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN-RVLHRDLKCANIFLTK-----------  141 (426)
T ss_pred             --CceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh-hhhcccchhhhhhccc-----------
Confidence              35699999999 99999999877766699999999999999999999987 9999999999999966           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (426)
T KOG0589|consen  142 --------------------------------------------------------------------------------  141 (426)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                               +..|+|+|||+|+.....   ..+.+||+.|++||++.+.+|+.++|||||||++
T Consensus       142 -------------------------~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~  196 (426)
T KOG0589|consen  142 -------------------------DKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCL  196 (426)
T ss_pred             -------------------------cCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchH
Confidence                                     456899999999876544   4567899999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh-ccCCh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK-YDFSE  432 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  432 (530)
                      |||++-+++|...+         ....+.++                                       .... ...+.
T Consensus       197 yEm~~lk~aF~a~~---------m~~Li~ki---------------------------------------~~~~~~Plp~  228 (426)
T KOG0589|consen  197 YEMCTLKPAFKASN---------MSELILKI---------------------------------------NRGLYSPLPS  228 (426)
T ss_pred             HHHHhcccccCccc---------hHHHHHHH---------------------------------------hhccCCCCCc
Confidence            99999999997543         22222221                                       1111 24556


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      ..+.+++.||..||..+|..||++.++|.+|.+.
T Consensus       229 ~ys~el~~lv~~~l~~~P~~RPsa~~LL~~P~l~  262 (426)
T KOG0589|consen  229 MYSSELRSLVKSMLRKNPEHRPSALELLRRPHLL  262 (426)
T ss_pred             cccHHHHHHHHHHhhcCCccCCCHHHHhhChhhh
Confidence            6789999999999999999999999999999876

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=3.5e-44  Score=370.71  Aligned_cols=253  Identities=23%  Similarity=0.364  Sum_probs=201.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|+++++||+|+||.||+|++..+++.||||++.+..    .....+.+|+.+|+++      .|+||+++++.|.   
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l------~h~~iv~~~~~~~---   71 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEA------DNEWVVKLYYSFQ---   71 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhC------CCCCcceEEEEEE---
Confidence            47999999999999999999999999999999986532    2345677899999998      7888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .+..+||||||| +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~Nill~~-----------  136 (376)
T cd05598          72 -DKDNLYFVMDYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVHKM-GFIHRDIKPDNILIDR-----------  136 (376)
T ss_pred             -cCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCCHHHEEECC-----------
Confidence             457999999999 89999998643  4589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (376)
T cd05598         137 --------------------------------------------------------------------------------  136 (376)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---------------------------------------
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---------------------------------------  317 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---------------------------------------  317 (530)
                                               ++.++|+|||+|....                                       
T Consensus       137 -------------------------~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (376)
T cd05598         137 -------------------------DGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERR  191 (376)
T ss_pred             -------------------------CCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhh
Confidence                                     4568999999873210                                       


Q ss_pred             -------cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCch
Q 045988          318 -------KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPR  390 (530)
Q Consensus       318 -------~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~  390 (530)
                             ......+||+.|+|||++.+..++.++|||||||++|+|++|.+||.+..      .......+...   ...
T Consensus       192 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~---~~~  262 (376)
T cd05598         192 RKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADT------PAETQLKVINW---ETT  262 (376)
T ss_pred             hhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCC------HHHHHHHHhcc---Ccc
Confidence                   00123479999999999999999999999999999999999999996433      11111111100   000


Q ss_pred             hhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCc---CHHHHhcCCCCCC
Q 045988          391 KIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRP---TAAQCLTHPWINV  467 (530)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rp---ta~elL~hp~f~~  467 (530)
                                                         .........++++.+||.+|+ .+|.+|+   ++.|+++||||+.
T Consensus       263 -----------------------------------~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~  306 (376)
T cd05598         263 -----------------------------------LHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKG  306 (376)
T ss_pred             -----------------------------------ccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCC
Confidence                                               000111235678899999976 5999999   9999999999986


Q ss_pred             C
Q 045988          468 G  468 (530)
Q Consensus       468 ~  468 (530)
                      .
T Consensus       307 ~  307 (376)
T cd05598         307 I  307 (376)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=2.4e-43  Score=353.19  Aligned_cols=284  Identities=30%  Similarity=0.488  Sum_probs=219.5

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      +.++|.+.++||+|+||.||+|.+..+++.||+|.+....  .....+.+|+.+++.+      .|+||+++++++.   
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~nI~~~~~~~~---   74 (301)
T cd07873           4 KLETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDL------KHANIVTLHDIIH---   74 (301)
T ss_pred             cccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhc------CCCCcceEEEEEe---
Confidence            3578999999999999999999999999999999876532  2344677899999999      7888999999998   


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       .....++||||++++|..++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        75 -~~~~~~lv~e~~~~~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~lH~~-~i~H~dlkp~Nil~~~------------  139 (301)
T cd07873          75 -TEKSLTLVFEYLDKDLKQYLDDC-GNSINMHNVKLFLFQLLRGLNYCHRR-KVLHRDLKPQNLLINE------------  139 (301)
T ss_pred             -cCCeEEEEEeccccCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCHHHEEECC------------
Confidence             44789999999988999888643 33588999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (301)
T cd07873         140 --------------------------------------------------------------------------------  139 (301)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il  353 (530)
                                              +..++|+|||++.....   ......+++.|+|||++.+. .++.++|||||||++
T Consensus       140 ------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l  195 (301)
T cd07873         140 ------------------------RGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIF  195 (301)
T ss_pred             ------------------------CCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHH
Confidence                                    45699999999865322   22344678999999998764 478899999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||...+      ....+..+...++.++...|........ +....         ........  .......
T Consensus       196 ~el~tg~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~--~~~~~~~  257 (301)
T cd07873         196 YEMSTGRPLFPGST------VEEQLHFIFRILGTPTEETWPGILSNEE-FKSYN---------YPKYRADC--LHNHAPR  257 (301)
T ss_pred             HHHHhCCCCCCCCC------HHHHHHHHHHHcCCCChhhchhhhcccc-ccccc---------cCcccccc--HHhhcCC
Confidence            99999999997543      4566777778887776655432211111 00000         00000000  0011234


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .++.+.+||.+||++||.+|||++|+|+||||..-.
T Consensus       258 ~~~~~~~li~~ml~~dp~~R~t~~eil~h~~f~~~~  293 (301)
T cd07873         258 LDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHCLG  293 (301)
T ss_pred             CCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccc
Confidence            567899999999999999999999999999997543

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=8.7e-44  Score=361.06  Aligned_cols=251  Identities=24%  Similarity=0.345  Sum_probs=200.9

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||.||+|.+..+++.||||++++..    .....+.+|+.++..+.     +||||++++++|.    ....+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~-----~hp~Iv~~~~~~~----~~~~~   71 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETAS-----NHPFLVGLHSCFQ----TESRL   71 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc-----CCCCCCceEEEEE----cCCEE
Confidence            47999999999999999999999999988642    22345678888888874     6899999999998    45789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      ||||||| +++|..++..  .+.+++..++.++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        72 ~lv~e~~~~g~L~~~~~~--~~~l~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nili~~-----------------  131 (329)
T cd05588          72 FFVIEFVSGGDLMFHMQR--QRKLPEEHARFYSAEISLALNFLHER-GIIYRDLKLDNVLLDA-----------------  131 (329)
T ss_pred             EEEEeCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEECC-----------------
Confidence            9999999 8899888763  34599999999999999999999997 9999999999999954                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (329)
T cd05588         132 --------------------------------------------------------------------------------  131 (329)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++...   .......+||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       132 -------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g  192 (329)
T cd05588         132 -------------------EGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAG  192 (329)
T ss_pred             -------------------CCCEEECcCccccccccCCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHC
Confidence                               456999999998642   1223456799999999999998999999999999999999999


Q ss_pred             CCCCCCCCCCCCC--CChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          360 DVLFDPHSGDNYD--RDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       360 ~~PF~~~~~~~~~--~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      ..||.........  .....+.                                         ..+......++...+..
T Consensus       193 ~~Pf~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~p~~~~~~  231 (329)
T cd05588         193 RSPFDIVGMSDNPDQNTEDYLF-----------------------------------------QVILEKQIRIPRSLSVK  231 (329)
T ss_pred             CCCcccccccccccccchHHHH-----------------------------------------HHHHcCCCCCCCCCCHH
Confidence            9999643321100  0011110                                         11111222344556788


Q ss_pred             HHHHHhhccCcCCCCCcC------HHHHhcCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPT------AAQCLTHPWINV  467 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpt------a~elL~hp~f~~  467 (530)
                      +.+||.+||+.||.+|++      +.++++||||..
T Consensus       232 ~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~  267 (329)
T cd05588         232 ASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRN  267 (329)
T ss_pred             HHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCC
Confidence            999999999999999997      799999999975

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=8.8e-44  Score=361.50  Aligned_cols=254  Identities=25%  Similarity=0.365  Sum_probs=202.0

Q ss_pred             CEEEEEEeccccceEEEEEEeC---CCCeEEEEEEecccc-----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~-----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +|++.++||+|+||+||+|++.   .+++.||+|++.+..     ...+.+.+|+.+++.+.     +|++|++++++|.
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~-----~~~~i~~~~~~~~   75 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVR-----QSPFLVTLHYAFQ   75 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhcc-----CCCCcccEEEEEe
Confidence            5899999999999999999864   478999999987532     22345678999998885     5889999999988


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          ....+|+||||+ +++|.+++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        76 ----~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivHrDlkp~Nili~~--------  140 (332)
T cd05614          76 ----TEAKLHLILDYVSGGEMFTHLYQ--RDNFSEDEVRFYSGEIILALEHLHKL-GIVYRDIKLENILLDS--------  140 (332)
T ss_pred             ----cCCEEEEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CcEecCCCHHHeEECC--------
Confidence                457899999999 8899998864  34589999999999999999999997 9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (332)
T cd05614         141 --------------------------------------------------------------------------------  140 (332)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCC-CCCcchhHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSK-YSTPADLWS  348 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWS  348 (530)
                                                  ++.++|+|||++.....    .....+||+.|+|||++.+.. ++.++||||
T Consensus       141 ----------------------------~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diws  192 (332)
T cd05614         141 ----------------------------EGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWS  192 (332)
T ss_pred             ----------------------------CCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCcccccc
Confidence                                        45799999999865321    123457999999999998754 789999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||.......   ....+..  .+                                       .....
T Consensus       193 lG~il~elltg~~pf~~~~~~~---~~~~~~~--~~---------------------------------------~~~~~  228 (332)
T cd05614         193 LGILIFELLTGASPFTLEGERN---TQSEVSR--RI---------------------------------------LKCDP  228 (332)
T ss_pred             chhhhhhhhcCCCCCCCCCCCC---CHHHHHH--HH---------------------------------------hcCCC
Confidence            9999999999999996432111   1111100  00                                       11112


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      .++...++.+.+||.+||..||.+||     +++++++||||+..
T Consensus       229 ~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~  273 (332)
T cd05614         229 PFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGL  273 (332)
T ss_pred             CCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence            23345678899999999999999999     88999999999864

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=4.1e-44  Score=361.39  Aligned_cols=245  Identities=26%  Similarity=0.391  Sum_probs=197.5

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      ++||+|+||.||+|+++.+|+.||+|+++...    ........|..++..+.     +||||++++++|.    ...++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~~~~~~----~~~~~   71 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAW-----ENPFLTHLYCTFQ----TKEHL   71 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhcc-----CCCCccCeeEEEE----eCCEE
Confidence            47999999999999999999999999987642    23445667777776543     7899999999998    45799


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      |+||||+ +++|..++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        72 ~lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivHrDlkp~Nil~~~-----------------  131 (316)
T cd05620          72 FFVMEFLNGGDLMFHIQDK--GRFDLYRATFYAAEIVCGLQFLHSK-GIIYRDLKLDNVMLDR-----------------  131 (316)
T ss_pred             EEEECCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEECC-----------------
Confidence            9999999 88998888643  4589999999999999999999997 9999999999999954                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (316)
T cd05620         132 --------------------------------------------------------------------------------  131 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++...   .......+||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       132 -------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g  192 (316)
T cd05620         132 -------------------DGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIG  192 (316)
T ss_pred             -------------------CCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhC
Confidence                               456999999998642   2223456799999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||.+.+      .......+.                                          .....++...+.++.
T Consensus       193 ~~Pf~~~~------~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~  224 (316)
T cd05620         193 QSPFHGDD------EDELFESIR------------------------------------------VDTPHYPRWITKESK  224 (316)
T ss_pred             CCCCCCCC------HHHHHHHHH------------------------------------------hCCCCCCCCCCHHHH
Confidence            99996432      111111110                                          011122334567899


Q ss_pred             HHHhhccCcCCCCCcCH-HHHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRPTA-AQCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rpta-~elL~hp~f~~~  468 (530)
                      +||.+||+.||.+|+++ +++++||||+..
T Consensus       225 ~li~~~l~~dP~~R~~~~~~~~~h~~f~~~  254 (316)
T cd05620         225 DILEKLFERDPTRRLGVVGNIRGHPFFKTI  254 (316)
T ss_pred             HHHHHHccCCHHHcCCChHHHHcCCCcCCC
Confidence            99999999999999997 589999999764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=3.7e-43  Score=354.24  Aligned_cols=293  Identities=26%  Similarity=0.409  Sum_probs=212.6

Q ss_pred             EEEeccccceEEEEEEeCC--CCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQ--TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVC  124 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~--~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~  124 (530)
                      ..+||+|+||+||+|++..  ++..||+|.+..... ...+.+|+.+|+++      .||||+++++++...  ....++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~-~~~~~~E~~~l~~l------~h~niv~~~~~~~~~--~~~~~~   76 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI-SMSACREIALLREL------KHPNVIALQKVFLSH--SDRKVW   76 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC-cHHHHHHHHHHHhC------CCCCeeeEEEEEecc--CCCeEE
Confidence            4689999999999998654  568999998876532 44677899999999      788899999998754  456899


Q ss_pred             EEEeccCcCHHHHHHhhc-------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          125 MVFEYLGENLLTLIKYAD-------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       125 lVmE~~~~~L~~~i~~~~-------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      +||||++++|.+++....       ...+++..++.++.||+.||+|||++ ||+||||||+|||+....+         
T Consensus        77 lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~-~ivH~Dlkp~Nil~~~~~~---------  146 (317)
T cd07867          77 LLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEGP---------  146 (317)
T ss_pred             EEEeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC-CEEcCCCCHHHEEEccCCC---------
Confidence            999999889998875422       12378899999999999999999997 9999999999999943110         


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (317)
T cd07867         147 --------------------------------------------------------------------------------  146 (317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCC-CCCCcchhHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGS-KYSTPADLWSFA  350 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG  350 (530)
                                             ..+.++|+|||++......      ....+||+.|+|||++.+. .++.++||||||
T Consensus       147 -----------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG  203 (317)
T cd07867         147 -----------------------ERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIG  203 (317)
T ss_pred             -----------------------CCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHH
Confidence                                   0356999999999754322      2345789999999999874 589999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCC---CCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          351 CICFELATGDVLFDPHSGDN---YDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~---~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |++|+|++|.+||.......   ......++..+...+|......|........+...........    ..........
T Consensus       204 ~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  279 (317)
T cd07867         204 CIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTT----YANSSLIKYM  279 (317)
T ss_pred             HHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhhhhcccc----cCCchhhhhh
Confidence            99999999999997544221   1123466777888888776655543322211111000000000    0000000000


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .......+..+.+||.+||+.||.+|||+.|+|+||||
T Consensus       280 ~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         280 EKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             hcccCCCChHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            11112335678899999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=6.6e-44  Score=361.03  Aligned_cols=250  Identities=22%  Similarity=0.325  Sum_probs=203.1

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +|.+.+.||+|+||.||+|++..+++.||||++.+...    .......|..++..+.     .|++|+++++++.    
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~~~~~~----   71 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSG-----KPPFLTQLHSCFQ----   71 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc-----CCCeEeeEEEEEe----
Confidence            58999999999999999999999999999999876431    2234566777776653     6888999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....+|+||||+ +++|..++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        72 ~~~~~~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~Nill~~------------  136 (323)
T cd05616          72 TMDRLYFVMEYVNGGDLMYQIQQV--GRFKEPHAVFYAAEIAIGLFFLHSK-GIIYRDLKLDNVMLDS------------  136 (323)
T ss_pred             cCCEEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEecCCCHHHeEECC------------
Confidence            457899999999 88999888643  4489999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (323)
T cd05616         137 --------------------------------------------------------------------------------  136 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                              ++.++|+|||++....   ......+||+.|+|||++.+..++.++|||||||++|
T Consensus       137 ------------------------~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~  192 (323)
T cd05616         137 ------------------------EGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLY  192 (323)
T ss_pred             ------------------------CCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHH
Confidence                                    4579999999986432   2234567999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|..||.+..      .......+.                                          .....++...
T Consensus       193 elltg~~Pf~~~~------~~~~~~~i~------------------------------------------~~~~~~p~~~  224 (323)
T cd05616         193 EMLAGQAPFEGED------EDELFQSIM------------------------------------------EHNVAYPKSM  224 (323)
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHH------------------------------------------hCCCCCCCcC
Confidence            9999999996432      111111111                                          1122334456


Q ss_pred             HHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      +.++.+||.+||+.||.+|++     ..++++||||+..
T Consensus       225 s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~  263 (323)
T cd05616         225 SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI  263 (323)
T ss_pred             CHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCC
Confidence            788999999999999999998     4899999999864

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=2.2e-44  Score=364.89  Aligned_cols=245  Identities=26%  Similarity=0.390  Sum_probs=198.5

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||.||+|.+..+++.||+|++....    .....+.+|+++++.+      .||||++++++|.    ....+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~------~hp~i~~~~~~~~----~~~~~   70 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS------RHPFLTALKYSFQ----THDRL   70 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCCceEEEEE----cCCEE
Confidence            46999999999999999999999999987642    2234556788888887      7889999999998    45789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      ||||||+ +++|..++..  ...+++..+..++.||+.||+|||+..||+||||||+|||++.                 
T Consensus        71 ~lv~E~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~-----------------  131 (325)
T cd05594          71 CFVMEYANGGELFFHLSR--ERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDK-----------------  131 (325)
T ss_pred             EEEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECC-----------------
Confidence            9999999 8899887763  3458999999999999999999997239999999999999954                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (325)
T cd05594         132 --------------------------------------------------------------------------------  131 (325)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++....   .......||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       132 -------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG  192 (325)
T cd05594         132 -------------------DGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  192 (325)
T ss_pred             -------------------CCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccC
Confidence                               4579999999986422   223345799999999999998999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||....      .......+                                          ......++...++++.
T Consensus       193 ~~Pf~~~~------~~~~~~~i------------------------------------------~~~~~~~p~~~~~~~~  224 (325)
T cd05594         193 RLPFYNQD------HEKLFELI------------------------------------------LMEEIRFPRTLSPEAK  224 (325)
T ss_pred             CCCCCCCC------HHHHHHHH------------------------------------------hcCCCCCCCCCCHHHH
Confidence            99996432      11111111                                          1111223445678899


Q ss_pred             HHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      +||.+||+.||.+|+     ++.++|+||||...
T Consensus       225 ~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~  258 (325)
T cd05594         225 SLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGI  258 (325)
T ss_pred             HHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcCCC
Confidence            999999999999997     99999999999863

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1.2e-43  Score=365.70  Aligned_cols=254  Identities=24%  Similarity=0.388  Sum_probs=204.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|++.++||+|+||.||+|++..+++.||+|++.+..    .....+.+|+.+++.+      +||||++++++|. 
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~------~h~~iv~~~~~~~-  113 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHA------NSEWIVQLHYAFQ-  113 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC------CCCCcceEEEEEe-
Confidence            3578999999999999999999999999999999987532    2234467899999888      7889999999988 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .+.++|+||||| +++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+|||++.         
T Consensus       114 ---~~~~~~lv~Ey~~gg~L~~~l~~---~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDLkp~NILl~~---------  177 (370)
T cd05596         114 ---DDKYLYMVMEYMPGGDLVNLMSN---YDIPEKWARFYTAEVVLALDAIHSM-GFIHRDVKPDNMLLDK---------  177 (370)
T ss_pred             ---cCCEEEEEEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEEcC---------
Confidence               557899999999 8999998864   3488999999999999999999997 9999999999999955         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (370)
T cd05596         178 --------------------------------------------------------------------------------  177 (370)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCC----CCCCcchh
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGS----KYSTPADL  346 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~----~~~~~~Di  346 (530)
                                                 ++.++|+|||++......    ....+||+.|+|||++.+.    .++.++||
T Consensus       178 ---------------------------~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di  230 (370)
T cd05596         178 ---------------------------SGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDW  230 (370)
T ss_pred             ---------------------------CCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceee
Confidence                                       467999999998654321    2345799999999999754    37899999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|.+||.+.+      .......+..   ...                                     
T Consensus       231 wSlGvilyelltG~~Pf~~~~------~~~~~~~i~~---~~~-------------------------------------  264 (370)
T cd05596         231 WSVGVFLYEMLVGDTPFYADS------LVGTYSKIMD---HKN-------------------------------------  264 (370)
T ss_pred             eehhHHHHHHHhCCCCcCCCC------HHHHHHHHHc---CCC-------------------------------------
Confidence            999999999999999996433      1111111110   000                                     


Q ss_pred             hccCC--hhcHHHHHHHHhhccCcCCCC--CcCHHHHhcCCCCCCCC
Q 045988          427 KYDFS--EKDANDMADFLVPILDFVPEK--RPTAAQCLTHPWINVGP  469 (530)
Q Consensus       427 ~~~~~--~~~~~~~~dLl~~mL~~dP~~--Rpta~elL~hp~f~~~~  469 (530)
                      .+.++  ...+.++.+||.+||..+|.+  |++++|+++||||+...
T Consensus       265 ~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~~~~  311 (370)
T cd05596         265 SLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKNDQ  311 (370)
T ss_pred             cCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcCcccCCCC
Confidence            00111  235788999999999999988  99999999999998643

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=4.6e-44  Score=361.84  Aligned_cols=244  Identities=25%  Similarity=0.376  Sum_probs=198.7

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      ++||+|+||.||+|++..+++.||||+++...    ........|.+++..+.     +||||++++++|.    ....+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~-----~hp~i~~~~~~~~----~~~~~   71 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAA-----KHPFLTALHCCFQ----TKDRL   71 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhcc-----CCCCccceeeEEE----cCCeE
Confidence            46999999999999999999999999987642    22345667888887653     7899999999998    45789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      |+||||+ +++|..++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        72 ~lv~E~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDikp~Nill~~-----------------  131 (321)
T cd05591          72 FFVMEYVNGGDLMFQIQRS--RKFDEPRSRFYAAEVTLALMFLHRH-GVIYRDLKLDNILLDA-----------------  131 (321)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEECC-----------------
Confidence            9999999 88998888643  4589999999999999999999997 9999999999999955                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (321)
T cd05591         132 --------------------------------------------------------------------------------  131 (321)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++....   .......||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       132 -------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg  192 (321)
T cd05591         132 -------------------EGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAG  192 (321)
T ss_pred             -------------------CCCEEEeecccceecccCCccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcC
Confidence                               4579999999986422   223445789999999999998999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||...+      ....+..+.                                          .....++...+.++.
T Consensus       193 ~~Pf~~~~------~~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~  224 (321)
T cd05591         193 QPPFEADN------EDDLFESIL------------------------------------------HDDVLYPVWLSKEAV  224 (321)
T ss_pred             CCCCCCCC------HHHHHHHHH------------------------------------------cCCCCCCCCCCHHHH
Confidence            99996433      112221111                                          111122334567899


Q ss_pred             HHHhhccCcCCCCCc-------CHHHHhcCCCCCC
Q 045988          440 DFLVPILDFVPEKRP-------TAAQCLTHPWINV  467 (530)
Q Consensus       440 dLl~~mL~~dP~~Rp-------ta~elL~hp~f~~  467 (530)
                      +||.+||+.||.+|+       ++.++++||||..
T Consensus       225 ~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~  259 (321)
T cd05591         225 SILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKE  259 (321)
T ss_pred             HHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccCC
Confidence            999999999999999       9999999999975

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=1.2e-43  Score=365.48  Aligned_cols=255  Identities=25%  Similarity=0.385  Sum_probs=202.5

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++.+..    .....+.+|+.+++.+      .||||++++++|. 
T Consensus        41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~------~hp~iv~~~~~~~-  113 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA------NSPWVVQLFCAFQ-  113 (370)
T ss_pred             CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC------CCCCEeeEEEEEE-
Confidence            3578999999999999999999999999999999986532    2234567899999888      7889999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         ++.++|+||||| +++|.+++...   .+++..++.++.||+.||+|||++ ||+||||||+|||++.         
T Consensus       114 ---~~~~~~lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~~-~IvHrDLKp~NILl~~---------  177 (370)
T cd05621         114 ---DDKYLYMVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHSM-GLIHRDVKPDNMLLDK---------  177 (370)
T ss_pred             ---cCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHEEECC---------
Confidence               557999999999 89999988642   489999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (370)
T cd05621         178 --------------------------------------------------------------------------------  177 (370)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCC----CCCcchh
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSK----YSTPADL  346 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~----~~~~~Di  346 (530)
                                                 ++.+||+|||++......    ....+||+.|+|||++.+..    ++.++||
T Consensus       178 ---------------------------~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~Di  230 (370)
T cd05621         178 ---------------------------HGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDW  230 (370)
T ss_pred             ---------------------------CCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCE
Confidence                                       467999999999754322    23557999999999997643    7899999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|.+||.+.+      .......+.......                                      
T Consensus       231 wSlG~ilyell~G~~Pf~~~~------~~~~~~~i~~~~~~~--------------------------------------  266 (370)
T cd05621         231 WSVGVFLFEMLVGDTPFYADS------LVGTYSKIMDHKNSL--------------------------------------  266 (370)
T ss_pred             EeehHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCccc--------------------------------------
Confidence            999999999999999996432      111222221100000                                      


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCC--CcCHHHHhcCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEK--RPTAAQCLTHPWINVG  468 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~--Rpta~elL~hp~f~~~  468 (530)
                      .+......+..+++||.+||..++.+  |+++.|+++||||+..
T Consensus       267 ~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~~  310 (370)
T cd05621         267 NFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKND  310 (370)
T ss_pred             CCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcCcccCCC
Confidence            00111234678999999999865544  8899999999999864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1e-43  Score=358.58  Aligned_cols=245  Identities=27%  Similarity=0.418  Sum_probs=196.6

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||.||+|.+..+++.||||+++...    ...+....|..++..+.     .||||+++++++.    .+..+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~hp~i~~~~~~~~----~~~~~   71 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAW-----EHPFLTHLFCTFQ----TKEHL   71 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhcc-----CCCCccceeeEEE----cCCEE
Confidence            47999999999999999999999999987642    22344556777665542     7999999999998    45789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      |+||||+ +++|..++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        72 ~lv~e~~~gg~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~-~ivH~dlkp~Nill~~-----------------  131 (316)
T cd05592          72 FFVMEYLNGGDLMFHIQSS--GRFDEARARFYAAEIICGLQFLHKK-GIIYRDLKLDNVLLDK-----------------  131 (316)
T ss_pred             EEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEeCCCCHHHeEECC-----------------
Confidence            9999999 89998888643  3599999999999999999999997 9999999999999954                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (316)
T cd05592         132 --------------------------------------------------------------------------------  131 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       132 -------------------~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G  192 (316)
T cd05592         132 -------------------DGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIG  192 (316)
T ss_pred             -------------------CCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhC
Confidence                               4579999999986432   223445799999999999998899999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||.+..      .......+   ..                                       ....++...+.++.
T Consensus       193 ~~Pf~~~~------~~~~~~~i---~~---------------------------------------~~~~~~~~~~~~~~  224 (316)
T cd05592         193 QSPFHGED------EDELFDSI---LN---------------------------------------DRPHFPRWISKEAK  224 (316)
T ss_pred             CCCCCCCC------HHHHHHHH---Hc---------------------------------------CCCCCCCCCCHHHH
Confidence            99996433      11111111   10                                       11122334567889


Q ss_pred             HHHhhccCcCCCCCcCH-HHHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRPTA-AQCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rpta-~elL~hp~f~~~  468 (530)
                      +||.+||..||.+||++ .+++.||||...
T Consensus       225 ~ll~~~l~~~P~~R~~~~~~l~~h~~~~~~  254 (316)
T cd05592         225 DCLSKLFERDPTKRLGVDGDIRQHPFFRGI  254 (316)
T ss_pred             HHHHHHccCCHHHcCCChHHHHcCcccCCC
Confidence            99999999999999986 588999999864

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=2.2e-43  Score=358.12  Aligned_cols=252  Identities=26%  Similarity=0.368  Sum_probs=200.2

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||+||+|++..+++.||+|++++..    .....+.+|+.++.++.     +||||++++++|.    ....+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~hp~iv~~~~~~~----~~~~~   71 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS-----NHPFLVGLHSCFQ----TESRL   71 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcC-----CCCcCCceeeEEE----eCCEE
Confidence            47999999999999999999999999987642    22345667888877663     6899999999998    44789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      |+||||+ +++|..++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        72 ~lv~E~~~~~~L~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dikp~Nili~~-----------------  131 (329)
T cd05618          72 FFVIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEISLALNYLHER-GIIYRDLKLDNVLLDS-----------------  131 (329)
T ss_pred             EEEEeCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEECC-----------------
Confidence            9999999 8899887753  34599999999999999999999997 9999999999999955                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (329)
T cd05618         132 --------------------------------------------------------------------------------  131 (329)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++....   .......||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       132 -------------------~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g  192 (329)
T cd05618         132 -------------------EGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAG  192 (329)
T ss_pred             -------------------CCCEEEeeCCccccccCCCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhC
Confidence                               4579999999986422   223445799999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCC--CCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          360 DVLFDPHSGDNY--DRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       360 ~~PF~~~~~~~~--~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      ..||........  ......+.                                         ..+......++...+..
T Consensus       193 ~~Pf~~~~~~~~~~~~~~~~~~-----------------------------------------~~i~~~~~~~p~~~~~~  231 (329)
T cd05618         193 RSPFDIVGSSDNPDQNTEDYLF-----------------------------------------QVILEKQIRIPRSLSVK  231 (329)
T ss_pred             CCCCccCCCcCCcccccHHHHH-----------------------------------------HHHhcCCCCCCCCCCHH
Confidence            999963221111  00111110                                         11111223345566788


Q ss_pred             HHHHHhhccCcCCCCCcC------HHHHhcCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPT------AAQCLTHPWINVG  468 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpt------a~elL~hp~f~~~  468 (530)
                      +.+||.+||+.||.+||+      +.++++||||+..
T Consensus       232 ~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~  268 (329)
T cd05618         232 AASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  268 (329)
T ss_pred             HHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCCC
Confidence            999999999999999998      5899999999764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.8e-43  Score=347.76  Aligned_cols=255  Identities=24%  Similarity=0.358  Sum_probs=206.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .|++.++||+|+||+||+|.+..+++.||+|++....    .....+.+|+.+++.+      +|+||+++++.+.    
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~----   70 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV------NSRFVVSLAYAYE----   70 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhc------CCCCEeeeeeeec----
Confidence            4899999999999999999999999999999886532    1234467899999999      7888999999988    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .+..+|+||||+ +++|..++.......+++..+..++.||+.||.|||++ ||+||||||+|||++.            
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~~------------  137 (285)
T cd05605          71 TKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE-RIVYRDLKPENILLDD------------  137 (285)
T ss_pred             CCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC-CcEecCCCHHHEEECC------------
Confidence            457899999999 88998887654445699999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (285)
T cd05605         138 --------------------------------------------------------------------------------  137 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                              ...++|+|||++.....  .....+|++.|+|||++.+..++.++||||+||++|+
T Consensus       138 ------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~e  193 (285)
T cd05605         138 ------------------------YGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYE  193 (285)
T ss_pred             ------------------------CCCEEEeeCCCceecCCCCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHH
Confidence                                    45699999999865322  2234578999999999998889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||.+...      ......+...+.                                      .....++...+
T Consensus       194 l~~g~~pf~~~~~------~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~  229 (285)
T cd05605         194 MIEGKSPFRQRKE------KVKREEVERRVK--------------------------------------EDQEEYSEKFS  229 (285)
T ss_pred             HHHCCCCCCCCch------hhHHHHHHHHhh--------------------------------------hcccccCcccC
Confidence            9999999964321      111111111110                                      01112233456


Q ss_pred             HHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      ..+.+||.+||..||.+||     +++++++||||...
T Consensus       230 ~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~  267 (285)
T cd05605         230 EAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTA  267 (285)
T ss_pred             HHHHHHHHHHccCCHHHhcCCCCCCHHHHhcCcCccCC
Confidence            7899999999999999999     99999999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1.2e-43  Score=357.91  Aligned_cols=245  Identities=28%  Similarity=0.429  Sum_probs=197.3

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||.||+|++..+++.||||+++...    ........|..++..+.     .||||+++++++.    ....+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~hp~iv~~~~~~~----~~~~~   71 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-----EHPFLTHLYCTFQ----TKENL   71 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhcc-----CCCcCcceEEEEE----eCCEE
Confidence            47999999999999999999999999987642    23345566777776542     7999999999998    44789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      |+||||+ +++|..++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        72 ~lv~ey~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~LH~~-~ivHrdikp~Nil~~~-----------------  131 (316)
T cd05619          72 FFVMEYLNGGDLMFHIQSC--HKFDLPRATFYAAEIICGLQFLHSK-GIVYRDLKLDNILLDT-----------------  131 (316)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEeCCCCHHHEEECC-----------------
Confidence            9999999 89999988643  3489999999999999999999997 9999999999999954                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (316)
T cd05619         132 --------------------------------------------------------------------------------  131 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++...   ........||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       132 -------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G  192 (316)
T cd05619         132 -------------------DGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIG  192 (316)
T ss_pred             -------------------CCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhC
Confidence                               456999999998642   1223445789999999999998999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||....      .......+ .                                         .....++...+.++.
T Consensus       193 ~~pf~~~~------~~~~~~~i-~-----------------------------------------~~~~~~~~~~~~~~~  224 (316)
T cd05619         193 QSPFHGHD------EEELFQSI-R-----------------------------------------MDNPCYPRWLTREAK  224 (316)
T ss_pred             CCCCCCCC------HHHHHHHH-H-----------------------------------------hCCCCCCccCCHHHH
Confidence            99996432      11111111 0                                         001112233567889


Q ss_pred             HHHhhccCcCCCCCcCHH-HHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRPTAA-QCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rpta~-elL~hp~f~~~  468 (530)
                      +||.+||+.||.+||++. ++++||||+..
T Consensus       225 ~li~~~l~~~P~~R~~~~~~l~~h~~~~~~  254 (316)
T cd05619         225 DILVKLFVREPERRLGVKGDIRQHPFFREI  254 (316)
T ss_pred             HHHHHHhccCHhhcCCChHHHHcCcccCCC
Confidence            999999999999999996 99999999874

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.2e-43  Score=360.17  Aligned_cols=254  Identities=25%  Similarity=0.376  Sum_probs=203.0

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|.+.+.||+|+||+||+|.+..+++.||||+++....    ....+.+|+.+++.+      +|+||+++++++.   
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~------~~~~i~~~~~~~~---   71 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSIS------NSPWIPQLQYAFQ---   71 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCcceeeEEe---
Confidence            479999999999999999999999999999999886432    344567788888877      7888999999988   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ....+||||||+ +++|.+++.... ..+++..++.++.||+.||.|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~lH~~-~i~H~Dlkp~NIll~~-----------  137 (330)
T cd05601          72 -DKDNLYLVMEYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLAIHSVHQM-GYVHRDIKPENVLIDR-----------  137 (330)
T ss_pred             -cCCeEEEEECCCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeEcccCchHheEECC-----------
Confidence             457899999999 899999987542 4599999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (330)
T cd05601         138 --------------------------------------------------------------------------------  137 (330)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhc------CCCCCCcchh
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLL------GSKYSTPADL  346 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~------~~~~~~~~Di  346 (530)
                                               .+.++|+|||++......    .....||+.|+|||++.      +..++.++||
T Consensus       138 -------------------------~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di  192 (330)
T cd05601         138 -------------------------TGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDW  192 (330)
T ss_pred             -------------------------CCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCccee
Confidence                                     467999999999654322    22347899999999987      4568899999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|..||...+      .......+......                                      .
T Consensus       193 wslG~il~el~~g~~Pf~~~~------~~~~~~~i~~~~~~--------------------------------------~  228 (330)
T cd05601         193 WSLGVIAYEMIYGRSPFHEGT------SAKTYNNIMNFQRF--------------------------------------L  228 (330)
T ss_pred             ecccceeeeeccCCCCCCCCC------HHHHHHHHHcCCCc--------------------------------------c
Confidence            999999999999999996432      11112111110000                                      0


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .+......+.++.+||.+||+ ||.+|||+.++++||||...
T Consensus       229 ~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~  269 (330)
T cd05601         229 KFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKI  269 (330)
T ss_pred             CCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCC
Confidence            001112356789999999998 99999999999999999864

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2.2e-43  Score=362.62  Aligned_cols=251  Identities=24%  Similarity=0.385  Sum_probs=201.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++++.||+|+||+||+|.+..+++.||||++....    .....+.+|+.++..+      +|++|+++++.|.   
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~iv~~~~~~~---   71 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEA------DGAWVVKMFYSFQ---   71 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC------CCCCEeeEEEEEE---
Confidence            46999999999999999999999999999999987532    2345667799999888      7888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       +..++||||||| +++|.+++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~E~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~~L~~lH~~-givHrDLkp~NIli~~-----------  136 (360)
T cd05627          72 -DKRNLYLIMEFLPGGDMMTLLMK--KDTLSEEATQFYIAETVLAIDAIHQL-GFIHRDIKPDNLLLDA-----------  136 (360)
T ss_pred             -cCCEEEEEEeCCCCccHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEccCCCHHHEEECC-----------
Confidence             557899999999 8899999864  34589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (360)
T cd05627         137 --------------------------------------------------------------------------------  136 (360)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------------------------------------
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------------------------------------  319 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------------------------------------  319 (530)
                                               ++.++|+|||++......                                     
T Consensus       137 -------------------------~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (360)
T cd05627         137 -------------------------KGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQ  191 (360)
T ss_pred             -------------------------CCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccc
Confidence                                     456899999987532110                                     


Q ss_pred             -cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCc
Q 045988          320 -FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRY  398 (530)
Q Consensus       320 -~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  398 (530)
                       ....+||+.|+|||++.+..|+.++|||||||++|+|++|.+||....      .......+....             
T Consensus       192 ~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~------~~~~~~~i~~~~-------------  252 (360)
T cd05627         192 LAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET------PQETYRKVMNWK-------------  252 (360)
T ss_pred             cccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCC------HHHHHHHHHcCC-------------
Confidence             123579999999999999999999999999999999999999996433      111111111000             


Q ss_pred             ccccccccCccccchhcccCCchhhhhhhccCC--hhcHHHHHHHHhhccCcCCCCCc---CHHHHhcCCCCCCC
Q 045988          399 SRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS--EKDANDMADFLVPILDFVPEKRP---TAAQCLTHPWINVG  468 (530)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dLl~~mL~~dP~~Rp---ta~elL~hp~f~~~  468 (530)
                                                 ....++  ...++++++||.+|+ .||.+|+   ++.|+++||||+..
T Consensus       253 ---------------------------~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~  299 (360)
T cd05627         253 ---------------------------ETLVFPPEVPISEKAKDLILRFC-TDSENRIGSNGVEEIKSHPFFEGV  299 (360)
T ss_pred             ---------------------------CceecCCCCCCCHHHHHHHHHhc-cChhhcCCCCCHHHHhcCCCCCCC
Confidence                                       000111  124678999999977 5999998   48999999999864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.3e-43  Score=358.17  Aligned_cols=245  Identities=25%  Similarity=0.368  Sum_probs=199.4

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||+||+|.+..+++.||||++++..    .......+|+.++..+.     .||||++++++|.    ....+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~-----~h~~i~~~~~~~~----~~~~~   71 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAG-----KHPFLTQLHSCFQ----TKDRL   71 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhcc-----CCCCccceeeEEE----cCCEE
Confidence            47999999999999999999999999988642    23445677888887764     6899999999998    45789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      |+||||+ +++|...+...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++.                 
T Consensus        72 ~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~Nill~~-----------------  131 (318)
T cd05570          72 FFVMEYVNGGDLMFHIQRS--GRFDEPRARFYAAEIVLGLQFLHER-GIIYRDLKLDNVLLDS-----------------  131 (318)
T ss_pred             EEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEccCCCHHHeEECC-----------------
Confidence            9999999 88998887643  3599999999999999999999997 9999999999999955                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (318)
T cd05570         132 --------------------------------------------------------------------------------  131 (318)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       132 -------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G  192 (318)
T cd05570         132 -------------------EGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAG  192 (318)
T ss_pred             -------------------CCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhC
Confidence                               4569999999986421   223345689999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||.+.+      .......+                                          ......++...+..+.
T Consensus       193 ~~pf~~~~------~~~~~~~i------------------------------------------~~~~~~~~~~~~~~~~  224 (318)
T cd05570         193 QSPFEGDD------EDELFQSI------------------------------------------LEDEVRYPRWLSKEAK  224 (318)
T ss_pred             CCCCCCCC------HHHHHHHH------------------------------------------HcCCCCCCCcCCHHHH
Confidence            99996432      11111111                                          0111123344567899


Q ss_pred             HHHhhccCcCCCCCcCH-----HHHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRPTA-----AQCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rpta-----~elL~hp~f~~~  468 (530)
                      +||.+||+.||.+||++     .+++.||||+..
T Consensus       225 ~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~  258 (318)
T cd05570         225 SILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREI  258 (318)
T ss_pred             HHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence            99999999999999999     999999999764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=4.5e-43  Score=355.52  Aligned_cols=252  Identities=24%  Similarity=0.345  Sum_probs=202.4

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||+||+|.+..+++.||+|++++..    .....+.+|+.++.++.     .||+|++++++|.    ....+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~i~~~~~~~~----~~~~~   71 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQAS-----SNPFLVGLHSCFQ----TTSRL   71 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhc-----CCCCEeeEEEEEE----eCCEE
Confidence            47999999999999999999999999988642    22345678888888874     6899999999998    45789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      |+||||+ +++|..++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        72 ~lv~e~~~~~~L~~~~~~--~~~l~~~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~Nili~~-----------------  131 (327)
T cd05617          72 FLVIEYVNGGDLMFHMQR--QRKLPEEHARFYAAEICIALNFLHER-GIIYRDLKLDNVLLDA-----------------  131 (327)
T ss_pred             EEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEEeC-----------------
Confidence            9999999 8899888763  34599999999999999999999997 9999999999999965                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (327)
T cd05617         132 --------------------------------------------------------------------------------  131 (327)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       132 -------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g  192 (327)
T cd05617         132 -------------------DGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAG  192 (327)
T ss_pred             -------------------CCCEEEeccccceeccCCCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhC
Confidence                               4569999999986421   223456799999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||..............+....                                         ......++...+..+.
T Consensus       193 ~~pf~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~p~~~~~~~~  231 (327)
T cd05617         193 RSPFDIITDNPDMNTEDYLFQVI-----------------------------------------LEKPIRIPRFLSVKAS  231 (327)
T ss_pred             CCCCCccCCCcccccHHHHHHHH-----------------------------------------HhCCCCCCCCCCHHHH
Confidence            99997544322211111111111                                         1111233445667899


Q ss_pred             HHHhhccCcCCCCCcC------HHHHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRPT------AAQCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rpt------a~elL~hp~f~~~  468 (530)
                      +||.+||..||.+|++      ..++++||||+.-
T Consensus       232 ~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~  266 (327)
T cd05617         232 HVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSI  266 (327)
T ss_pred             HHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCC
Confidence            9999999999999998      5799999999864

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-46  Score=345.67  Aligned_cols=255  Identities=27%  Similarity=0.401  Sum_probs=215.7

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      .-|.++++||+|+||.||+|.++.+|+.+|||.+.-... ...+..|+.||.++      +.|+||++|+.|.    ...
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sD-LQEIIKEISIMQQC------~S~yVVKYYGSYF----K~s  101 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTD-LQEIIKEISIMQQC------KSKYVVKYYGSYF----KHS  101 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccch-HHHHHHHHHHHHHc------CCchhhhhhhhhc----cCC
Confidence            347899999999999999999999999999998776544 67788999999999      7889999999887    457


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      .++|||||| .|++.+.+. .+...+++.++..+++..+.||+|||. +.-||||||..|||+..               
T Consensus       102 DLWIVMEYCGAGSiSDI~R-~R~K~L~E~EIs~iL~~TLKGL~YLH~-~~KIHRDIKAGNILLNT---------------  164 (502)
T KOG0574|consen  102 DLWIVMEYCGAGSISDIMR-ARRKPLSEQEISAVLRDTLKGLQYLHD-LKKIHRDIKAGNILLNT---------------  164 (502)
T ss_pred             ceEeehhhcCCCcHHHHHH-HhcCCccHHHHHHHHHHHHhHHHHHHH-HHHHHhhcccccEEEcc---------------
Confidence            899999999 788888776 455679999999999999999999998 48899999999999955               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (502)
T KOG0574|consen  165 --------------------------------------------------------------------------------  164 (502)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                           ++..||+|||.|.....   ...+..|||.|||||++..-.|++++||||||++..||.
T Consensus       165 ---------------------~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMA  223 (502)
T KOG0574|consen  165 ---------------------DGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMA  223 (502)
T ss_pred             ---------------------cchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhh
Confidence                                 67899999999965433   356778999999999999888999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      .|++||.         +.+-+..|+-+-..+|+.                                    +.-+...+++
T Consensus       224 EG~PPYs---------DIHPMRAIFMIPT~PPPT------------------------------------F~KPE~WS~~  258 (502)
T KOG0574|consen  224 EGRPPYS---------DIHPMRAIFMIPTKPPPT------------------------------------FKKPEEWSSE  258 (502)
T ss_pred             cCCCCcc---------cccccceeEeccCCCCCC------------------------------------CCChHhhhhH
Confidence            9999996         333344444333333321                                    2234566889


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      +-|||++||..+|++|.||.++++|||++..+.
T Consensus       259 F~DFi~~CLiK~PE~R~TA~~L~~H~FiknA~g  291 (502)
T KOG0574|consen  259 FNDFIRSCLIKKPEERKTALRLCEHTFIKNAPG  291 (502)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhhhhcCCCc
Confidence            999999999999999999999999999997763

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=1.7e-42  Score=348.33  Aligned_cols=295  Identities=29%  Similarity=0.385  Sum_probs=225.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|+++....   ......+|+.+++++      .|+||+++++++... 
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~-   78 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNL------RHPNIVELKEVVVGK-   78 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhC------CCCCCcceEEEEecC-
Confidence            4789999999999999999999999999999998764422   223456899999999      788899999998743 


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ....+++||||++++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+||+++.            
T Consensus        79 -~~~~~~lv~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nil~~~------------  143 (309)
T cd07845          79 -HLDSIFLVMEYCEQDLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHEN-FIIHRDLKVSNLLLTD------------  143 (309)
T ss_pred             -CCCeEEEEEecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEECC------------
Confidence             335789999999889998887533 4589999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (309)
T cd07845         144 --------------------------------------------------------------------------------  143 (309)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il  353 (530)
                                              .+.++|+|||.+.....   ......+++.|+|||++.+ ..++.++|||||||++
T Consensus       144 ------------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il  199 (309)
T cd07845         144 ------------------------KGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCIL  199 (309)
T ss_pred             ------------------------CCCEEECccceeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHH
Confidence                                    45699999999975432   2333456888999999876 4589999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||...+      ....+..+...++..+..++........ .   +...    ....+.... ..   ....
T Consensus       200 ~el~~g~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~----~~~~~~~~~-~~---~~~~  261 (309)
T cd07845         200 AELLAHKPLLPGKS------EIEQLDLIIQLLGTPNESIWPGFSDLPL-V---GKFT----LPKQPYNNL-KH---KFPW  261 (309)
T ss_pred             HHHHhCCCCCCCCC------HHHHHHHHHHhcCCCChhhchhhhcccc-c---cccc----ccCCCCCch-HH---hccc
Confidence            99999999997543      5667777788877766554432211000 0   0000    000000000 00   0112


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCCCCCcccC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAAT  479 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~~~~~~  479 (530)
                      .++.+.+||.+||++||.+|||+.|+|.||||+..+-+..|..+++
T Consensus       262 ~~~~~~~li~~ml~~dp~~R~t~~~il~h~~f~~~~~~~~~~~~~~  307 (309)
T cd07845         262 LSEAGLRLLNFLLMYDPKKRATAEEALESSYFKEKPLPCEPEMMPT  307 (309)
T ss_pred             cCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccCCCCCCCCcCCC
Confidence            3678899999999999999999999999999998877666555544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.4e-42  Score=344.43  Aligned_cols=277  Identities=30%  Similarity=0.467  Sum_probs=212.3

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|.+.+.||+|+||.||+|++..+++.||||+++...   .....+.+|+.+++++      .||||+++++++.    .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   70 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKEL------QHPNIVCLQDVLM----Q   70 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhc------CCCCEeeeEEEEe----e
Confidence            5899999999999999999999999999999876532   2235678899999999      6888999999998    4


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADY-RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~-~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +...|+||||+.++|.+++..... ..+++..++.++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        71 ~~~~~~v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dl~p~nil~~~-------------  136 (285)
T cd07861          71 ESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR-RVLHRDLKPQNLLIDN-------------  136 (285)
T ss_pred             CCeEEEEEecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCCHHHEEEcC-------------
Confidence            478999999998899888865433 4589999999999999999999997 9999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (285)
T cd07861         137 --------------------------------------------------------------------------------  136 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~  354 (530)
                                             ++.++|+|||++.....   ......+++.|+|||++.+. .++.++|||||||++|
T Consensus       137 -----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~  193 (285)
T cd07861         137 -----------------------KGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFA  193 (285)
T ss_pred             -----------------------CCcEEECcccceeecCCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHH
Confidence                                   46799999999864322   12344678999999998764 4789999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|++||.+..      ..+.+..+...++......+........+.....         .+.....    .......
T Consensus       194 ~l~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~----~~~~~~~  254 (285)
T cd07861         194 EMATKKPLFHGDS------EIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFP---------KWKKGSL----RSAVKNL  254 (285)
T ss_pred             HHHHCCCCCCCCC------HHHHHHHHHHHhCCCChhhhhcchhhHHHHhhcc---------ccCcchh----HHhcCCC
Confidence            9999999996543      3455555666666554444322111111000000         0000000    0112235


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ++++.+||.+||+.||.+|||+.++|.||||
T Consensus       255 ~~~~~~li~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         255 DEDGLDLLEKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             CHHHHHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence            7888999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.2e-43  Score=357.21  Aligned_cols=245  Identities=27%  Similarity=0.393  Sum_probs=198.4

Q ss_pred             EEEeccccceEEEEEEeC---CCCeEEEEEEecccc-----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           47 QSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~-----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +++||+|+||.||+|++.   .+++.||||+++...     .....+.+|+.+|+.+      .||||+++++.|.    
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l------~hp~iv~~~~~~~----   70 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAV------KHPFIVDLIYAFQ----   70 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhC------CCCchhceeeEEe----
Confidence            368999999999999864   468999999987532     2234567899999998      7889999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .+..+|+||||+ +++|.+++..  ...+.+..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~~------------  135 (323)
T cd05584          71 TGGKLYLILEYLSGGELFMHLER--EGIFMEDTACFYLSEISLALEHLHQQ-GIIYRDLKPENILLDA------------  135 (323)
T ss_pred             cCCeEEEEEeCCCCchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEECC------------
Confidence            446899999999 8899988864  34488999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (323)
T cd05584         136 --------------------------------------------------------------------------------  135 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                              ++.++|+|||++....   .......||+.|+|||++.+..++.++|||||||++|
T Consensus       136 ------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  191 (323)
T cd05584         136 ------------------------QGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMY  191 (323)
T ss_pred             ------------------------CCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHH
Confidence                                    4679999999986422   1223457999999999999988999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||....      ....+..+                                          ......++...
T Consensus       192 ell~G~~pf~~~~------~~~~~~~~------------------------------------------~~~~~~~~~~~  223 (323)
T cd05584         192 DMLTGAPPFTAEN------RKKTIDKI------------------------------------------LKGKLNLPPYL  223 (323)
T ss_pred             HHhcCCCCCCCCC------HHHHHHHH------------------------------------------HcCCCCCCCCC
Confidence            9999999996432      11111111                                          11112334456


Q ss_pred             HHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      ++.+.+||.+||+.||.+||     ++.++++||||...
T Consensus       224 ~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~  262 (323)
T cd05584         224 TPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHV  262 (323)
T ss_pred             CHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCC
Confidence            78899999999999999999     89999999999764

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=8.3e-43  Score=354.44  Aligned_cols=291  Identities=22%  Similarity=0.307  Sum_probs=210.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      +..++|++.++||+|+||.||+|.+..++..+|+|++....  .....+.+|+++++.+      +|+||++++++|.. 
T Consensus         2 l~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~-   74 (333)
T cd06650           2 LKDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC------NSPYIVGFYGAFYS-   74 (333)
T ss_pred             cchhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHC------CCCcccceeEEEEE-
Confidence            34689999999999999999999999999999999877542  2345688999999999      78889999999984 


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                         ..++|+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++.+|+||||||+|||++.          
T Consensus        75 ---~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~----------  139 (333)
T cd06650          75 ---DGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNS----------  139 (333)
T ss_pred             ---CCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcC----------
Confidence               47899999999 88999998743  348899999999999999999997437999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (333)
T cd06650         140 --------------------------------------------------------------------------------  139 (333)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                                ++.++|+|||++..... ......||..|+|||++.+..++.++|||||||++|
T Consensus       140 --------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~  193 (333)
T cd06650         140 --------------------------RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV  193 (333)
T ss_pred             --------------------------CCCEEEeeCCcchhhhhhccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHH
Confidence                                      45699999999865432 234457899999999999888999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc-------hhhhhhh
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL-------NKVLIEK  427 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  427 (530)
                      +|++|+.||.....          ..+...++............... ................+.       ..+....
T Consensus       194 ~l~~g~~p~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (333)
T cd06650         194 EMAIGRYPIPPPDA----------KELELMFGCPVEGDPAESETSPR-PRPPGRPLSSYGPDSRPPMAIFELLDYIVNEP  262 (333)
T ss_pred             HHHHCCCCCCCcch----------hHHHHHhcCcccCCccccccCcc-cCCccchhhhhcccccccccHHHHHHHHhcCC
Confidence            99999999964321          11222222111100000000000 000000000000000000       0000000


Q ss_pred             -ccCC-hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          428 -YDFS-EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       428 -~~~~-~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                       ...+ ...+.++.+||.+||++||.+|||+.|+|.||||+..
T Consensus       263 ~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~  305 (333)
T cd06650         263 PPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRS  305 (333)
T ss_pred             CccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhCHHHhcC
Confidence             0111 1246789999999999999999999999999999854

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=3.9e-43  Score=355.39  Aligned_cols=250  Identities=23%  Similarity=0.329  Sum_probs=202.4

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +|.+.+.||+|+||+||+|.++.+++.||||++.+..    ........|+.++..+.     +|++|++++++|.    
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~~~~~~----   71 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQD-----KPPFLTQLHSCFQ----   71 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc-----CCCchhheeeEEe----
Confidence            4789999999999999999999999999999987542    22345667888887764     5677889999988    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....+|+||||+ +++|..++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        72 ~~~~~~lv~Ey~~~g~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~-~ivHrDikp~Nill~~------------  136 (323)
T cd05615          72 TVDRLYFVMEYVNGGDLMYHIQQV--GKFKEPQAVFYAAEISVGLFFLHRR-GIIYRDLKLDNVMLDS------------  136 (323)
T ss_pred             cCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEECC------------
Confidence            447899999999 88999888643  4499999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (323)
T cd05615         137 --------------------------------------------------------------------------------  136 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                              ++.++|+|||++.....   ......||+.|+|||++.+..++.++|||||||++|
T Consensus       137 ------------------------~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~  192 (323)
T cd05615         137 ------------------------EGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLY  192 (323)
T ss_pred             ------------------------CCCEEEeccccccccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHH
Confidence                                    45699999999864321   223456899999999999989999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||.+..      .......+.                                          .....++...
T Consensus       193 elltG~~pf~~~~------~~~~~~~i~------------------------------------------~~~~~~p~~~  224 (323)
T cd05615         193 EMLAGQPPFDGED------EDELFQSIM------------------------------------------EHNVSYPKSL  224 (323)
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHH------------------------------------------hCCCCCCccC
Confidence            9999999996432      111111111                                          1112233445


Q ss_pred             HHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      +.++.+|+.+||+.||.+|++     ..++++||||...
T Consensus       225 ~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~  263 (323)
T cd05615         225 SKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRI  263 (323)
T ss_pred             CHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCC
Confidence            678999999999999999997     5899999999864

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=5.2e-43  Score=358.86  Aligned_cols=253  Identities=25%  Similarity=0.359  Sum_probs=199.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ..+|+++++||+|+||.||+|++..+++.||||++....  .....+.+|+++++.+      .|+||++++++|.    
T Consensus        73 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~----  142 (353)
T PLN00034         73 LSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDV------NHPNVVKCHDMFD----  142 (353)
T ss_pred             HHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhC------CCCCcceeeeEec----
Confidence            367999999999999999999999999999999986542  2345678999999998      7888999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....+++||||+ +++|...      ....+..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus       143 ~~~~~~lv~e~~~~~~L~~~------~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~------------  203 (353)
T PLN00034        143 HNGEIQVLLEFMDGGSLEGT------HIADEQFLADVARQILSGIAYLHRR-HIVHRDIKPSNLLINS------------  203 (353)
T ss_pred             cCCeEEEEEecCCCCccccc------ccCCHHHHHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEEcC------------
Confidence            457899999999 7776532      2366788899999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (353)
T PLN00034        204 --------------------------------------------------------------------------------  203 (353)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcC-----CCCCCcchhHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLG-----SKYSTPADLWSF  349 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~-----~~~~~~~DiWSl  349 (530)
                                              ++.+||+|||++......   ....+||..|+|||++..     ..++.++|||||
T Consensus       204 ------------------------~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Dvwsl  259 (353)
T PLN00034        204 ------------------------AKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSL  259 (353)
T ss_pred             ------------------------CCCEEEcccccceecccccccccccccCccccCccccccccccCcCCCcchhHHHH
Confidence                                    457999999999754322   245679999999998843     234678999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|+.||....      ..+....+..+...                                      ....
T Consensus       260 Gvil~el~~g~~pf~~~~------~~~~~~~~~~~~~~--------------------------------------~~~~  295 (353)
T PLN00034        260 GVSILEFYLGRFPFGVGR------QGDWASLMCAICMS--------------------------------------QPPE  295 (353)
T ss_pred             HHHHHHHHhCCCCCCCCC------CccHHHHHHHHhcc--------------------------------------CCCC
Confidence            999999999999996222      11111111111000                                      0111


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .+...+.++.+||.+||..||++|||+.|+|+||||.....
T Consensus       296 ~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~hp~~~~~~~  336 (353)
T PLN00034        296 APATASREFRHFISCCLQREPAKRWSAMQLLQHPFILRAQP  336 (353)
T ss_pred             CCCccCHHHHHHHHHHccCChhhCcCHHHHhcCcccccCCc
Confidence            22345678999999999999999999999999999997643

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=6.9e-43  Score=346.31  Aligned_cols=248  Identities=26%  Similarity=0.338  Sum_probs=197.9

Q ss_pred             eccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           50 LGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        50 LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ||+|+||+||+|.+..+++.||+|++.....    ..+.+..|+.+++.+      +|+||++++++|.    .....|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l------~~~~i~~~~~~~~----~~~~~~l   70 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKV------HSRFIVSLAYAFQ----TKTDLCL   70 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhC------CCCcEeeeeEEEc----CCCeEEE
Confidence            7999999999999999999999998865422    234567899999998      7888999999988    4578999


Q ss_pred             EEecc-CcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          126 VFEYL-GENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      ||||+ +++|..++...  ....+++..+..++.||+.||+|||++ ||+||||||+|||++.                 
T Consensus        71 v~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nili~~-----------------  132 (280)
T cd05608          71 VMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR-RIIYRDLKPENVLLDN-----------------  132 (280)
T ss_pred             EEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEECC-----------------
Confidence            99999 88998777432  234589999999999999999999997 9999999999999954                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (280)
T cd05608         133 --------------------------------------------------------------------------------  132 (280)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                         ++.++|+|||++......   .....||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       133 -------------------~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g  193 (280)
T cd05608         133 -------------------DGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAA  193 (280)
T ss_pred             -------------------CCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhC
Confidence                               456899999998653221   2345789999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||.......      ....+...                                      +......++...+..+.
T Consensus       194 ~~pf~~~~~~~------~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~  229 (280)
T cd05608         194 RGPFRARGEKV------ENKELKQR--------------------------------------ILNDSVTYPDKFSPASK  229 (280)
T ss_pred             CCCCCCCCcch------hHHHHHHh--------------------------------------hcccCCCCcccCCHHHH
Confidence            99996533110      00111000                                      00011123345678899


Q ss_pred             HHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      +||.+||+.||++||     +++++++||||+..
T Consensus       230 ~li~~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~  263 (280)
T cd05608         230 SFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDL  263 (280)
T ss_pred             HHHHHHhcCCHHHhcCCCCCCHHHHhcChhhhcC
Confidence            999999999999999     89999999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-44  Score=364.25  Aligned_cols=257  Identities=28%  Similarity=0.443  Sum_probs=215.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc-ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .+-|.|+..||.|+||.||+|..+.++...|-|++... ....+.++-||.||..+      +||+||++++.|...   
T Consensus        31 ~d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~C------dHP~ivkLl~ayy~e---  101 (1187)
T KOG0579|consen   31 RDHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAEC------DHPVIVKLLSAYYFE---  101 (1187)
T ss_pred             HHHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcC------CChHHHHHHHHHhcc---
Confidence            35688999999999999999999999999999987643 45678889999999999      899999999999854   


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                       +.++|+.|||+|+--+.+.-.-.+.+.+.+++.+++|+|.||.|||++ +|||||||..|||++-              
T Consensus       102 -nkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~-~iIHRDLKAGNiL~Tl--------------  165 (1187)
T KOG0579|consen  102 -NKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQ-NIIHRDLKAGNILLTL--------------  165 (1187)
T ss_pred             -CceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhc-chhhhhccccceEEEe--------------
Confidence             689999999955444444334456799999999999999999999998 9999999999999966              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (1187)
T KOG0579|consen  166 --------------------------------------------------------------------------------  165 (1187)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhc-----CCCCCCcchhHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLL-----GSKYSTPADLWSFAC  351 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~-----~~~~~~~~DiWSlG~  351 (530)
                                            ++.++|+|||.+...   .+...+++|||+|||||+..     ..+|+.++||||||+
T Consensus       166 ----------------------dGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGI  223 (1187)
T KOG0579|consen  166 ----------------------DGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGI  223 (1187)
T ss_pred             ----------------------cCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhh
Confidence                                  678999999998543   23467789999999999875     457999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      +|.||..+.+|..         +...+..+..+....|+.++                                    .|
T Consensus       224 TLIEMAqiEPPHh---------elnpMRVllKiaKSePPTLl------------------------------------qP  258 (1187)
T KOG0579|consen  224 TLIEMAQIEPPHH---------ELNPMRVLLKIAKSEPPTLL------------------------------------QP  258 (1187)
T ss_pred             HHHHHhccCCCcc---------ccchHHHHHHHhhcCCCccc------------------------------------Cc
Confidence            9999999999985         44556666666555554332                                    34


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ...+..+.|||.+||..||..||+++++|+||||+..+
T Consensus       259 S~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~~~~  296 (1187)
T KOG0579|consen  259 SHWSRSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQNAP  296 (1187)
T ss_pred             chhhhHHHHHHHHHHhcCCccCCCHHHHhhCcccccCC
Confidence            45567899999999999999999999999999998544

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-43  Score=352.04  Aligned_cols=248  Identities=25%  Similarity=0.400  Sum_probs=202.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeE-EEEEEecccccc---hHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHY-VALKVQKSAQHY---TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~-vAiK~~~~~~~~---~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +......+.+.||+|+||+||++..  .|+. ||+|++......   ...+.+|+.+|.+|      +|||||++++++.
T Consensus        38 i~~~~l~~~~~iG~G~~g~V~~~~~--~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l------~HpNIV~f~G~~~  109 (362)
T KOG0192|consen   38 IDPDELPIEEVLGSGSFGTVYKGKW--RGTDVVAVKIISDPDFDDESRKAFRREASLLSRL------RHPNIVQFYGACT  109 (362)
T ss_pred             cChHHhhhhhhcccCCceeEEEEEe--CCceeEEEEEecchhcChHHHHHHHHHHHHHHhC------CCCCeeeEEEEEc
Confidence            3455677788899999999999964  4555 999998865322   45899999999998      7889999999998


Q ss_pred             ecCCCCc-EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC-ceeccCCCCcEEEeeccCCCC
Q 045988          115 HSGPNGQ-HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELS-IIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       115 ~~~~~~~-~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~g-IvHrDIKp~NILl~~~~~~~~  191 (530)
                      ..    . .++|||||+ +|+|..++.......++...+..|+.||+.|+.|||++ + ||||||||+|||++.      
T Consensus       110 ~~----~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~-~~iIHrDLK~~NiLv~~------  178 (362)
T KOG0192|consen  110 SP----PGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE-GPIIHRDLKSDNILVDL------  178 (362)
T ss_pred             CC----CCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CCeeecccChhhEEEcC------
Confidence            53    3 699999999 99999999765456699999999999999999999997 9 999999999999965      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (362)
T KOG0192|consen  179 --------------------------------------------------------------------------------  178 (362)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhccc-ceEEecCCcccccc---cccCCCCCCCCccCChhhc--CCCCCCcch
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDL-KCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLL--GSKYSTPAD  345 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~--~~~~~~~~D  345 (530)
                                                    .. .+||+|||+++...   ...+...||+.|||||++.  ...|+.++|
T Consensus       179 ------------------------------~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~D  228 (362)
T KOG0192|consen  179 ------------------------------KGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSD  228 (362)
T ss_pred             ------------------------------CCCEEEECCCccceeeccccccccCCCCCccccChhhhcCCCCcCCccch
Confidence                                          33 79999999997655   3445578999999999999  568999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      |||||++||||+||+.||....      . .+++..+..-+.                                      
T Consensus       229 vySFgIvlWEl~t~~~Pf~~~~------~-~~~~~~v~~~~~--------------------------------------  263 (362)
T KOG0192|consen  229 VYSFGIVLWELLTGEIPFEDLA------P-VQVASAVVVGGL--------------------------------------  263 (362)
T ss_pred             hhhHHHHHHHHHHCCCCCCCCC------H-HHHHHHHHhcCC--------------------------------------
Confidence            9999999999999999997543      1 122111111111                                      


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                       ...++...++.+..||.+||..||.+||+..+++.
T Consensus       264 -Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~  298 (362)
T KOG0192|consen  264 -RPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVS  298 (362)
T ss_pred             -CCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHH
Confidence             12234446788999999999999999999998876

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.9e-45  Score=332.96  Aligned_cols=290  Identities=28%  Similarity=0.432  Sum_probs=230.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecc---cccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKS---AQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~---~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+.|.-..+||+|.||.||+|+.+.+|+.||+|++..   ........++|+++|..|      .|+|++.+++++....
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~l------kHenv~nliEic~tk~   89 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLL------KHENVVNLIEICRTKA   89 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHh------cchhHHHHHHHHhhcc
Confidence            4678889999999999999999999999999996443   345677889999999999      6677888888776532


Q ss_pred             ----CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          118 ----PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       118 ----~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          .....+|+||.+|..+|..++.... ..++..+++.+|.+|+.||.|+|++ .|+|||+||+|+||+.        
T Consensus        90 Tp~~r~r~t~ylVf~~cehDLaGlLsn~~-vr~sls~Ikk~Mk~Lm~GL~~iHr~-kilHRDmKaaNvLIt~--------  159 (376)
T KOG0669|consen   90 TPTNRDRATFYLVFDFCEHDLAGLLSNRK-VRFSLSEIKKVMKGLMNGLYYIHRN-KILHRDMKAANVLITK--------  159 (376)
T ss_pred             CCcccccceeeeeHHHhhhhHHHHhcCcc-ccccHHHHHHHHHHHHHHHHHHHHh-hHHhhcccHhhEEEcC--------
Confidence                1234699999999999999997543 3499999999999999999999997 9999999999999966        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (376)
T KOG0669|consen  160 --------------------------------------------------------------------------------  159 (376)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-------cccCCCCCCCCccCChhhcCCC-CCCcch
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-------KQFTNDIQTRQYRCPEVLLGSK-YSTPAD  345 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-------~~~~~~~gt~~y~aPE~l~~~~-~~~~~D  345 (530)
                                                  ++.+||+|||+++...       ...+..+-|.||++||.++|.. |+++.|
T Consensus       160 ----------------------------dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iD  211 (376)
T KOG0669|consen  160 ----------------------------DGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPID  211 (376)
T ss_pred             ----------------------------CceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcch
Confidence                                        6789999999996432       2256667799999999999854 999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchh---
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK---  422 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  422 (530)
                      ||..|||+.+|++|.+.|.+.+      +..++..|..++|...+++|......          .-+..+...|+.+   
T Consensus       212 iWgAgCimaeMwtrspimqgnt------eqqql~~Is~LcGs~tkevWP~~d~l----------pL~~sie~ePl~~~~~  275 (376)
T KOG0669|consen  212 IWGAGCIMAEMWTRSPIMQGNT------EQQQLHLISQLCGSITKEVWPNVDNL----------PLYQSIELEPLPKGQK  275 (376)
T ss_pred             hHhHHHHHHHHHccCccccCCh------HHHHHHHHHHHhccCCcccCCCcccc----------hHHHhccCCCCCcchh
Confidence            9999999999999999998766      78899999999999988887554321          1111111111100   


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ...+...-+-.-.+++.|||.+||.+||.+|+.++++|+|.||...|.
T Consensus       276 rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp~  323 (376)
T KOG0669|consen  276 RKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWKDPM  323 (376)
T ss_pred             hhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhchhhhhcCCc
Confidence            000000001122467889999999999999999999999999997765

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-44  Score=337.38  Aligned_cols=255  Identities=24%  Similarity=0.358  Sum_probs=219.4

Q ss_pred             cEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           37 DTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        37 ~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..+..++|..+++||+|.||.|.+|+.+.+++.||||++++.-    ......+.|-++|+..      .||.+..+-..
T Consensus       163 ~kvTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~------~HPFLt~LKYs  236 (516)
T KOG0690|consen  163 NKVTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNC------RHPFLTSLKYS  236 (516)
T ss_pred             ceeccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhc------cCcHHHHhhhh
Confidence            3445688999999999999999999999999999999988752    3344556788899888      78989999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      |+    ..+++|+||||+ ||.|+-.+..  .+.+++..++.+-..|++||.|||++ +||.||||.+|.|++.      
T Consensus       237 FQ----t~drlCFVMeyanGGeLf~HLsr--er~FsE~RtRFYGaEIvsAL~YLHs~-~ivYRDlKLENLlLDk------  303 (516)
T KOG0690|consen  237 FQ----TQDRLCFVMEYANGGELFFHLSR--ERVFSEDRTRFYGAEIVSALGYLHSR-NIVYRDLKLENLLLDK------  303 (516)
T ss_pred             hc----cCceEEEEEEEccCceEeeehhh--hhcccchhhhhhhHHHHHHhhhhhhC-Ceeeeechhhhheecc------
Confidence            98    668999999999 9998877764  45599999999999999999999998 9999999999999976      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       304 --------------------------------------------------------------------------------  303 (516)
T KOG0690|consen  304 --------------------------------------------------------------------------------  303 (516)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccc---cccccCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~---~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                    ++.+||.|||+++.   ......+++|||.|.|||++....|+.++|+|.
T Consensus       304 ------------------------------DGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG  353 (516)
T KOG0690|consen  304 ------------------------------DGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWG  353 (516)
T ss_pred             ------------------------------CCceEeeecccchhcccccceeccccCChhhcCchhhccccccceeehhh
Confidence                                          78899999999964   234467789999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      +||++|||++|++||....       .+.+                                         +.-|+.+.+
T Consensus       354 ~GVVMYEMmCGRLPFyn~d-------h~kL-----------------------------------------FeLIl~ed~  385 (516)
T KOG0690|consen  354 VGVVMYEMMCGRLPFYNKD-------HEKL-----------------------------------------FELILMEDL  385 (516)
T ss_pred             hhHHHHHHHhccCcccccc-------hhHH-----------------------------------------HHHHHhhhc
Confidence            9999999999999995322       1111                                         234555667


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      .||...+++++.||..+|..||.+|..     |.||.+|+||..-
T Consensus       386 kFPr~ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v  430 (516)
T KOG0690|consen  386 KFPRTLSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASV  430 (516)
T ss_pred             cCCccCCHHHHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccC
Confidence            788899999999999999999999985     8999999999753

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=1.9e-42  Score=343.37  Aligned_cols=277  Identities=30%  Similarity=0.452  Sum_probs=212.8

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++.++||+|+||.||+|++..+|+.||+|.++...   .....+.+|+.+++++      +|+||+++++++.    +
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l------~h~~i~~~~~~~~----~   70 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL------KHKNIVRLYDVLH----S   70 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhc------CCCCeeeHHHHhc----c
Confidence            5999999999999999999999999999999886532   2234567899999999      7888999999998    4


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ....++||||++++|.+++... ...+++..++.++.||+.||.|||++ ||+||||||+|||++.              
T Consensus        71 ~~~~~lv~e~~~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~-~i~H~dl~~~nil~~~--------------  134 (284)
T cd07839          71 DKKLTLVFEYCDQDLKKYFDSC-NGDIDPEIVKSFMFQLLKGLAFCHSH-NVLHRDLKPQNLLINK--------------  134 (284)
T ss_pred             CCceEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHEEEcC--------------
Confidence            5789999999988998887643 24489999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (284)
T cd07839         135 --------------------------------------------------------------------------------  134 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~e  355 (530)
                                            ++.++|+|||++.....   ......+++.|+|||++.+.. ++.++|||||||++|+
T Consensus       135 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~  192 (284)
T cd07839         135 ----------------------NGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAE  192 (284)
T ss_pred             ----------------------CCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHH
Confidence                                  45699999999865332   233456789999999987754 7999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....     .....+..+...++..+...+........+ ......           ... ..........+
T Consensus       193 l~tg~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~-~~~~~~~~~~~  254 (284)
T cd07839         193 LANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEESWPGVSKLPDY-KPYPMY-----------PAT-TSLVNVVPKLN  254 (284)
T ss_pred             HHhcCCCCcCCC-----CHHHHHHHHHHHhCCCChHHhHHhhhcccc-cccCCC-----------CCc-chhhhhcccCC
Confidence            999998864322     245667777777776665443221110000 000000           000 00001123456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      +++.+||.+||..||.+|||++++|.||||
T Consensus       255 ~~~~~li~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         255 STGRDLLQNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             HHHHHHHHHHhcCChhhcCCHHHHhcCCCC
Confidence            889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=2.1e-42  Score=337.92  Aligned_cols=252  Identities=32%  Similarity=0.588  Sum_probs=204.7

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHH---HHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA---ALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~---~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      |++++.||+|+||+||+|.+..+++.||+|++.........   ..+|+.+++++      .|+||+++++++..    .
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l------~~~~i~~~~~~~~~----~   70 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRL------RHPNIVQILDVFQD----D   70 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHH------TBTTBCHEEEEEEE----S
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccc------cccccccccccccc----c
Confidence            89999999999999999999999999999998876543332   34599999999      67889999999985    5


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...++||||+ +++|.+++.  ....+++..+..++.||+.||++||++ ||+||||||+|||++.              
T Consensus        71 ~~~~~v~~~~~~~~L~~~l~--~~~~~~~~~~~~~~~qi~~~L~~Lh~~-~i~H~dikp~NIl~~~--------------  133 (260)
T PF00069_consen   71 NYLYIVMEYCPGGSLQDYLQ--KNKPLSEEEILKIAYQILEALAYLHSK-GIVHRDIKPENILLDE--------------  133 (260)
T ss_dssp             SEEEEEEEEETTEBHHHHHH--HHSSBBHHHHHHHHHHHHHHHHHHHHT-TEEESSBSGGGEEEST--------------
T ss_pred             cccccccccccccccccccc--ccccccccccccccccccccccccccc-cccccccccccccccc--------------
Confidence            7899999999 559999997  344589999999999999999999997 9999999999999964              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (260)
T PF00069_consen  134 --------------------------------------------------------------------------------  133 (260)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccc---cccccCCCCCCCCccCChhhc-CCCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACW---TYKQFTNDIQTRQYRCPEVLL-GSKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~---~~~~~~~~~gt~~y~aPE~l~-~~~~~~~~DiWSlG~il~e  355 (530)
                                            ++.++|+|||.+..   .........++..|+|||++. +..++.++|||||||++|+
T Consensus       134 ----------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~  191 (260)
T PF00069_consen  134 ----------------------NGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYE  191 (260)
T ss_dssp             ----------------------TSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHH
T ss_pred             ----------------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                  56789999999964   234456678899999999998 7789999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....      ..+....+..........                                   .........
T Consensus       192 l~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~  230 (260)
T PF00069_consen  192 LLTGKLPFEESN------SDDQLEIIEKILKRPLPS-----------------------------------SSQQSREKS  230 (260)
T ss_dssp             HHHSSSSSTTSS------HHHHHHHHHHHHHTHHHH-----------------------------------HTTSHTTSH
T ss_pred             cccccccccccc------chhhhhhhhhcccccccc-----------------------------------cccccchhH
Confidence            999999996431      223333333322211110                                   001111223


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ..+.+||.+||+.||.+||++.++++||||
T Consensus       231 ~~l~~li~~~l~~~p~~R~~~~~l~~~~~~  260 (260)
T PF00069_consen  231 EELRDLIKKMLSKDPEQRPSAEELLKHPWF  260 (260)
T ss_dssp             HHHHHHHHHHSSSSGGGSTTHHHHHTSGGG
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhcCCCC
Confidence            789999999999999999999999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=1.3e-42  Score=357.98  Aligned_cols=256  Identities=24%  Similarity=0.369  Sum_probs=201.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++.+..    .....+.+|+.+++.+      .||||+++++.+. 
T Consensus        41 ~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~------~hp~iv~~~~~~~-  113 (371)
T cd05622          41 KAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA------NSPWVVQLFYAFQ-  113 (371)
T ss_pred             chhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC------CCCCCCeEEEEEE-
Confidence            3589999999999999999999999999999999986532    2234466788888887      7889999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .+.++|+||||| +++|.+++..   ..+++..++.++.||+.||+|||++ ||+||||||+|||++.         
T Consensus       114 ---~~~~~~lv~Ey~~gg~L~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDLkp~NIll~~---------  177 (371)
T cd05622         114 ---DDRYLYMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSM-GFIHRDVKPDNMLLDK---------  177 (371)
T ss_pred             ---cCCEEEEEEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC-CEEeCCCCHHHEEECC---------
Confidence               457899999999 8899998864   3489999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (371)
T cd05622         178 --------------------------------------------------------------------------------  177 (371)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCC----CCCcchh
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSK----YSTPADL  346 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~----~~~~~Di  346 (530)
                                                 ++.++|+|||++......    ....+||+.|+|||++.+..    ++.++||
T Consensus       178 ---------------------------~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~Di  230 (371)
T cd05622         178 ---------------------------SGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDW  230 (371)
T ss_pred             ---------------------------CCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccce
Confidence                                       467999999999754321    23557999999999997643    7899999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|.+||...+      .......+......                                      .
T Consensus       231 wSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~~~~--------------------------------------~  266 (371)
T cd05622         231 WSVGVFLYEMLVGDTPFYADS------LVGTYSKIMNHKNS--------------------------------------L  266 (371)
T ss_pred             eehhHHHHHHHhCCCCCCCCC------HHHHHHHHHcCCCc--------------------------------------c
Confidence            999999999999999996432      11111111110000                                      0


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCC--CcCHHHHhcCCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEK--RPTAAQCLTHPWINVGP  469 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~--Rpta~elL~hp~f~~~~  469 (530)
                      .+......+..+.+||.+||..++.+  |+++.++++||||+..+
T Consensus       267 ~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~~~~~~  311 (371)
T cd05622         267 TFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQ  311 (371)
T ss_pred             cCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCcccCCCC
Confidence            00112245788999999999844433  78999999999998754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.2e-42  Score=349.85  Aligned_cols=257  Identities=21%  Similarity=0.341  Sum_probs=199.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.+.||+|+||+||+|++..+++.||||++.+..    .....+.+|+.++..+      +|+||++++++|.   
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~---   71 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNG------DRRWITNLHYAFQ---   71 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC------CCCCCCceEEEEe---
Confidence            47999999999999999999999999999999987532    2234567788888887      7888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .+.++|+||||+ +++|.+++... ...+++..++.++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nill~~-----------  137 (331)
T cd05597          72 -DENNLYLVMDYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVLAIDSVHQL-GYVHRDIKPDNVLLDK-----------  137 (331)
T ss_pred             -cCCeEEEEEecCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC-CeEECCCCHHHEEECC-----------
Confidence             457999999999 99999998643 33589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (331)
T cd05597         138 --------------------------------------------------------------------------------  137 (331)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcC-----CCCCCcchhH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLG-----SKYSTPADLW  347 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~-----~~~~~~~DiW  347 (530)
                                               ++.++|+|||++......    ....+||+.|+|||++..     ..++.++|||
T Consensus       138 -------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diw  192 (331)
T cd05597         138 -------------------------NGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWW  192 (331)
T ss_pred             -------------------------CCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceee
Confidence                                     457999999998653222    122468999999999973     3578899999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|..||...+      ..+....+.......                                     ..
T Consensus       193 slG~~l~el~~g~~Pf~~~~------~~~~~~~i~~~~~~~-------------------------------------~~  229 (331)
T cd05597         193 SLGVCMYEMLYGETPFYAES------LVETYGKIMNHKEHF-------------------------------------QF  229 (331)
T ss_pred             hhhhHHHHHhhCCCCCCCCC------HHHHHHHHHcCCCcc-------------------------------------cC
Confidence            99999999999999996432      111111111000000                                     00


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCC--CcCHHHHhcCCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEK--RPTAAQCLTHPWINVGP  469 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~--Rpta~elL~hp~f~~~~  469 (530)
                      .......+..+.+||++||+.++.+  |+++.++|+||||....
T Consensus       230 ~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~~~  273 (331)
T cd05597         230 PPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEGID  273 (331)
T ss_pred             CCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCCCCCCCC
Confidence            0011235678999999999765544  78999999999998643

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-44  Score=381.28  Aligned_cols=252  Identities=27%  Similarity=0.421  Sum_probs=208.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +.++|.|+++||+|+||.|.+++++.+++.||+|++++.    ......|..|-.||..-      +.++|+.++..|+ 
T Consensus        73 ~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~------ns~Wiv~LhyAFQ-  145 (1317)
T KOG0612|consen   73 KAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFG------NSEWIVQLHYAFQ-  145 (1317)
T ss_pred             CHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcC------CcHHHHHHHHHhc-
Confidence            468999999999999999999999999999999998873    23345567778887655      6889999999999 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         +..++|+||||| ||+|..++....  .+++..+++|+..|+.||+-||+ +|+|||||||+||||+.         
T Consensus       146 ---D~~~LYlVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~-mgyVHRDiKPDNvLld~---------  210 (1317)
T KOG0612|consen  146 ---DERYLYLVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHS-MGYVHRDIKPDNVLLDK---------  210 (1317)
T ss_pred             ---CccceEEEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHh-ccceeccCCcceeEecc---------
Confidence               568999999999 999999998544  69999999999999999999999 79999999999999966         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (1317)
T KOG0612|consen  211 --------------------------------------------------------------------------------  210 (1317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhc----C-CCCCCcch
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLL----G-SKYSTPAD  345 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~----~-~~~~~~~D  345 (530)
                                                 .+.+||+|||.+......    ....||||.|++||++.    + +.|+..+|
T Consensus       211 ---------------------------~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecD  263 (1317)
T KOG0612|consen  211 ---------------------------SGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECD  263 (1317)
T ss_pred             ---------------------------cCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccc
Confidence                                       678999999998553321    34568999999999996    3 45999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      +|||||++|||+.|..||..          +.+..   .+|                                   +|+.
T Consensus       264 wWSlGV~~YEMlyG~TPFYa----------dslve---TY~-----------------------------------KIm~  295 (1317)
T KOG0612|consen  264 WWSLGVFMYEMLYGETPFYA----------DSLVE---TYG-----------------------------------KIMN  295 (1317)
T ss_pred             hhhhHHHHHHHHcCCCcchH----------HHHHH---HHH-----------------------------------HHhc
Confidence            99999999999999999953          22222   111                                   1111


Q ss_pred             h--hccCC--hhcHHHHHHHHhhccCcCCCCCcC---HHHHhcCCCCCCCC
Q 045988          426 E--KYDFS--EKDANDMADFLVPILDFVPEKRPT---AAQCLTHPWINVGP  469 (530)
Q Consensus       426 ~--~~~~~--~~~~~~~~dLl~~mL~~dP~~Rpt---a~elL~hp~f~~~~  469 (530)
                      .  .+.||  ..+|.++++||+++|+ +|+.|..   +.++-.||||...+
T Consensus       296 hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~HpFF~g~~  345 (1317)
T KOG0612|consen  296 HKESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKNHPFFEGID  345 (1317)
T ss_pred             hhhhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHHHhCccccCCC
Confidence            1  22333  3478999999999886 5899999   99999999998765

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.7e-43  Score=351.11  Aligned_cols=257  Identities=24%  Similarity=0.387  Sum_probs=199.9

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEec-c--cccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK-S--AQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~-~--~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +++..|+++++||+||.+.||++..-. ...||+|.+. .  +......+.+|+..|.+|.     .|.+||++||+-. 
T Consensus       358 Vkg~~Yeilk~iG~GGSSkV~kV~~s~-~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLk-----g~~~IIqL~DYEv-  430 (677)
T KOG0596|consen  358 VKGREYEILKQIGSGGSSKVFKVLNSD-KQIYALKKVVLLEADNQTLDGYRNEIALLNKLK-----GHDKIIQLYDYEV-  430 (677)
T ss_pred             ECcchhhHHHhhcCCCcceeeeeecCC-CcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhc-----CCceEEEEeeeec-
Confidence            467889999999999999999997543 4556665333 2  2234567889999999997     7788999999977 


Q ss_pred             cCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                         .+.++||||||-..+|...++... ..++...++.|..||+.|+.++|.+ ||||.||||.|+|+.           
T Consensus       431 ---~d~~lYmvmE~Gd~DL~kiL~k~~-~~~~~~~lk~ywkqML~aV~~IH~~-gIVHSDLKPANFLlV-----------  494 (677)
T KOG0596|consen  431 ---TDGYLYMVMECGDIDLNKILKKKK-SIDPDWFLKFYWKQMLLAVKTIHQH-GIVHSDLKPANFLLV-----------  494 (677)
T ss_pred             ---cCceEEEEeecccccHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHh-ceeecCCCcccEEEE-----------
Confidence               568999999999999999997543 3345468999999999999999998 999999999999994           


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       495 --------------------------------------------------------------------------------  494 (677)
T KOG0596|consen  495 --------------------------------------------------------------------------------  494 (677)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCC-----------
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSK-----------  339 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~-----------  339 (530)
                                                .+.+||+|||+|......     ..+.+||+.||+||.+....           
T Consensus       495 --------------------------kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~K  548 (677)
T KOG0596|consen  495 --------------------------KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIK  548 (677)
T ss_pred             --------------------------eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCccee
Confidence                                      467999999999765443     34568999999999986322           


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      .+.++||||||||||+|+.|++||..        -....+.+..+..+--                              
T Consensus       549 i~r~SDvWSLGCILYqMvYgktPf~~--------~~n~~aKl~aI~~P~~------------------------------  590 (677)
T KOG0596|consen  549 ISRKSDVWSLGCILYQMVYGKTPFGQ--------IINQIAKLHAITDPNH------------------------------  590 (677)
T ss_pred             ecCccchhhhhhHHHHHHhcCCchHH--------HHHHHHHHHhhcCCCc------------------------------
Confidence            56889999999999999999999952        1223444433322100                              


Q ss_pred             chhhhhhhccCChhc-HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          420 LNKVLIEKYDFSEKD-ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~-~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                             .++|+.-- ..++.++++.||.+||.+|||+.|+|+|||++--+
T Consensus       591 -------~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLqhpFl~~~~  634 (677)
T KOG0596|consen  591 -------EIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQHPFLQIQP  634 (677)
T ss_pred             -------cccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhcCccccccc
Confidence                   01122111 12389999999999999999999999999998543

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=4.9e-43  Score=354.65  Aligned_cols=244  Identities=25%  Similarity=0.325  Sum_probs=194.2

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHH-HHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKI-LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~i-l~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      +.||+|+||+||+|++..+|+.||||++.....    ....+..|..+ ++.+      .||||+++++.|.    ....
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l------~hp~iv~~~~~~~----~~~~   70 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNV------KHPFLVGLHYSFQ----TADK   70 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhC------CCCCCCCeeEEEE----eCCE
Confidence            479999999999999999999999999875421    12334455443 3445      7899999999998    4578


Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      +|+||||+ +++|..++..  ...+++..++.++.||+.||.|||++ ||+||||||+|||++.                
T Consensus        71 ~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~-givH~dikp~NIll~~----------------  131 (323)
T cd05575          71 LYFVLDYVNGGELFFHLQR--ERSFPEPRARFYAAEIASALGYLHSL-NIIYRDLKPENILLDS----------------  131 (323)
T ss_pred             EEEEEcCCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCCHHHeEECC----------------
Confidence            99999999 8899888864  34589999999999999999999997 9999999999999955                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (323)
T cd05575         132 --------------------------------------------------------------------------------  131 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT  358 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt  358 (530)
                                          ++.+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++
T Consensus       132 --------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~  191 (323)
T cd05575         132 --------------------QGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLY  191 (323)
T ss_pred             --------------------CCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhc
Confidence                                4579999999986422   22344578999999999999899999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |.+||....      .......   ++                                       .....+....+..+
T Consensus       192 g~~pf~~~~------~~~~~~~---i~---------------------------------------~~~~~~~~~~~~~~  223 (323)
T cd05575         192 GLPPFYSRD------TAEMYDN---IL---------------------------------------NKPLRLKPNISVSA  223 (323)
T ss_pred             CCCCCCCCC------HHHHHHH---HH---------------------------------------cCCCCCCCCCCHHH
Confidence            999996432      1111111   11                                       11112333457789


Q ss_pred             HHHHhhccCcCCCCCcCH----HHHhcCCCCCCC
Q 045988          439 ADFLVPILDFVPEKRPTA----AQCLTHPWINVG  468 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta----~elL~hp~f~~~  468 (530)
                      .+||.+||+.||.+||++    .+++.||||...
T Consensus       224 ~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~~~  257 (323)
T cd05575         224 RHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSI  257 (323)
T ss_pred             HHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcCCC
Confidence            999999999999999997    699999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=4.2e-42  Score=341.63  Aligned_cols=255  Identities=24%  Similarity=0.367  Sum_probs=204.1

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .|++.+.||+|+||+||+|.+..+++.||+|.+.....    ....+.+|+.+++++      +|++|+.+++.+.    
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l------~~~~i~~~~~~~~----   70 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKV------NSRFVVSLAYAYE----   70 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhC------CCCCeeeeeEEEe----
Confidence            47889999999999999999999999999998765421    123466899999998      6788999999988    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .....|+||||+ +++|.+++.......+++..+..++.||+.||.|||+. ||+||||||+||+++.            
T Consensus        71 ~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~iiH~dikp~Nil~~~------------  137 (285)
T cd05630          71 TKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE-RIVYRDLKPENILLDD------------  137 (285)
T ss_pred             cCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCCCHHHEEECC------------
Confidence            447899999999 88999888655555699999999999999999999996 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (285)
T cd05630         138 --------------------------------------------------------------------------------  137 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                              ...++|+|||++.....  ......||..|+|||++.+..++.++|||||||++|+
T Consensus       138 ------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~  193 (285)
T cd05630         138 ------------------------HGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYE  193 (285)
T ss_pred             ------------------------CCCEEEeeccceeecCCCccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHH
Confidence                                    35689999999865322  2234578999999999999899999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||.......   .......+.   ...                                      ...++...+
T Consensus       194 l~~g~~Pf~~~~~~~---~~~~~~~~~---~~~--------------------------------------~~~~~~~~~  229 (285)
T cd05630         194 MIAGQSPFQQRKKKI---KREEVERLV---KEV--------------------------------------QEEYSEKFS  229 (285)
T ss_pred             HHhCCCCCCCCCccc---hHHHHHhhh---hhh--------------------------------------hhhcCccCC
Confidence            999999996432100   001111110   000                                      001223456


Q ss_pred             HHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      +++.+||.+||+.||.+|||     +.|+++||||+..
T Consensus       230 ~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~~~  267 (285)
T cd05630         230 PDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQI  267 (285)
T ss_pred             HHHHHHHHHHhhcCHHHccCCCCCchHHHHcChhhhcc
Confidence            78999999999999999999     9999999999863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=7.7e-43  Score=354.73  Aligned_cols=258  Identities=26%  Similarity=0.413  Sum_probs=220.8

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccc---hHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY---TEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~---~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ++....+.|.+.+.||+|.|+.|.+|++..++..||||++.++...   ...+.+|+++|+.|      +|||||+++.+
T Consensus        50 ~~~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l------~HPnIvkl~~v  123 (596)
T KOG0586|consen   50 DDSNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSL------NHPNIVKLFSV  123 (596)
T ss_pred             cccccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhc------CCcceeeeeee
Confidence            4444568899999999999999999999999999999999987643   34578999999999      88999999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      ..    ....+|+||||+ ++.+++++...  +.+.+..++.++.|++.|++|||++ +|||||||.+||||+.      
T Consensus       124 ~~----t~~~lylV~eya~~ge~~~yl~~~--gr~~e~~ar~~F~q~vsaveYcH~k-~ivHrdLk~eNilL~~------  190 (596)
T KOG0586|consen  124 IE----TEATLYLVMEYASGGELFDYLVKH--GRMKEKEARAKFRQIVSAVEYCHSK-NIVHRDLKAENILLDE------  190 (596)
T ss_pred             ee----ecceeEEEEEeccCchhHHHHHhc--ccchhhhhhhhhHHHHHHHHHHhhc-ceeccccchhhccccc------
Confidence            98    558999999999 99999999754  3478899999999999999999998 9999999999999966      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (596)
T KOG0586|consen  191 --------------------------------------------------------------------------------  190 (596)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCC-CCcchhHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKY-STPADLWS  348 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~-~~~~DiWS  348 (530)
                                                    +.++||+|||++....  ....+.+|++.|.|||++.+..| ++.+|+||
T Consensus       191 ------------------------------~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Ws  240 (596)
T KOG0586|consen  191 ------------------------------NMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWS  240 (596)
T ss_pred             ------------------------------ccceeeeccccceeecccccccccCCCCCccChHhhcCcccCCcceehhh
Confidence                                          4569999999997644  33567899999999999999887 68999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      +|++||.|+.|.+||++..-...                                                ..+.+..++
T Consensus       241 lgvvly~LV~GsLPFDG~~lk~L------------------------------------------------r~rvl~gk~  272 (596)
T KOG0586|consen  241 LGVVLYALVEGSLPFDGQNLKEL------------------------------------------------RPRVLRGKY  272 (596)
T ss_pred             hhhhheeeeecccccCCcccccc------------------------------------------------cchheeeee
Confidence            99999999999999986552221                                                122333344


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .++...+-++.+||++||.++|.+|++.++++.|+|......
T Consensus       273 rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~W~n~~~~  314 (596)
T KOG0586|consen  273 RIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDRWRNDLLE  314 (596)
T ss_pred             cccceeechhHHHHHHhhccCccccCCHHHhhhhcccchhhh
Confidence            455566788999999999999999999999999999987654

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.8e-42  Score=369.83  Aligned_cols=296  Identities=21%  Similarity=0.257  Sum_probs=205.3

Q ss_pred             cccCcEeeCCCEEEEEEeccccceEEEEEEeCCC-CeEEEEE------------------EecccccchHHHHHHHHHHH
Q 045988           33 VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQT-SHYVALK------------------VQKSAQHYTEAALDEIKILK   93 (530)
Q Consensus        33 ~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~-~~~vAiK------------------~~~~~~~~~~~~~~Ei~il~   93 (530)
                      +..++.+ .++|+++++||+|+||+||+|..+.. +..+++|                  .+.........+.+|+.+|+
T Consensus       140 ~~~~~~~-~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~  218 (501)
T PHA03210        140 LKHDDEF-LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALG  218 (501)
T ss_pred             cccchhh-hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHH
Confidence            3445555 57899999999999999999876432 2222222                  12222223456788999999


Q ss_pred             HhhcCCCCCCcceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 045988           94 QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADY---RGVPLHMVKEICFHILVGLDHLHRELS  170 (530)
Q Consensus        94 ~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~---~~l~~~~~~~i~~qll~aL~~LH~~~g  170 (530)
                      ++      +|+|||++++++..    ....|+||++++++|..++.....   .......++.|+.||+.||+|||++ |
T Consensus       219 ~l------~HpnIv~l~~~~~~----~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~-g  287 (501)
T PHA03210        219 RL------NHENILKIEEILRS----EANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK-K  287 (501)
T ss_pred             hC------CCCCcCcEeEEEEE----CCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC-C
Confidence            99      78889999999984    468999999999899888753321   1234677889999999999999997 9


Q ss_pred             ceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCC
Q 045988          171 IIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPD  250 (530)
Q Consensus       171 IvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (530)
                      ||||||||+|||++.                                                                 
T Consensus       288 IiHrDLKP~NILl~~-----------------------------------------------------------------  302 (501)
T PHA03210        288 LIHRDIKLENIFLNC-----------------------------------------------------------------  302 (501)
T ss_pred             eecCCCCHHHEEECC-----------------------------------------------------------------
Confidence            999999999999954                                                                 


Q ss_pred             CCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCC
Q 045988          251 HTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQT  326 (530)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt  326 (530)
                                                                         ++.+||+|||++......    ....+||
T Consensus       303 ---------------------------------------------------~~~vkL~DFGla~~~~~~~~~~~~~~~gt  331 (501)
T PHA03210        303 ---------------------------------------------------DGKIVLGDFGTAMPFEKEREAFDYGWVGT  331 (501)
T ss_pred             ---------------------------------------------------CCCEEEEeCCCceecCcccccccccccCC
Confidence                                                               456999999999754322    2345799


Q ss_pred             CCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccccc
Q 045988          327 RQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH  406 (530)
Q Consensus       327 ~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  406 (530)
                      +.|+|||++.+..|+.++|||||||++|||++|.+++.....   .....++..++..++....++.....   .+|+-.
T Consensus       332 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~i  405 (501)
T PHA03210        332 VATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGG---GKPGKQLLKIIDSLSVCDEEFPDPPC---KLFDYI  405 (501)
T ss_pred             cCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCC---CCHHHHHHHHHHhcccChhhcCCcHH---HHHHHh
Confidence            999999999999999999999999999999999865432211   12345556666555544333211000   000000


Q ss_pred             CccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ......   ........+...    ...+.++.+||.+||++||.+|||+.|+|.||||....
T Consensus       406 ~~~~~~---~~~~~~~~~~~~----~~~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~~~  461 (501)
T PHA03210        406 DSAEID---HAGHSVPPLIRN----LGLPADFEYPLVKMLTFDWHLRPGAAELLALPLFSAEE  461 (501)
T ss_pred             hhhhcc---cCccchhhHHHh----cCCChHHHHHHHHHhccCcccCcCHHHHhhChhhhcCC
Confidence            000000   000000000011    12356788999999999999999999999999998654

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=7.6e-43  Score=352.94  Aligned_cols=243  Identities=23%  Similarity=0.329  Sum_probs=192.9

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHH-HHHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIK-ILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~-il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      ++||+|+||.||+|++..+++.||+|++.+...    ....+..|+. +++.+      .||||+++++.|.    ....
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~------~h~~iv~~~~~~~----~~~~   70 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNL------KHPFLVGLHYSFQ----TAEK   70 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhC------CCCCccceeeEEE----cCCE
Confidence            479999999999999999999999999875421    2233445554 35555      7899999999988    4578


Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      .|+||||+ +++|...+..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.                
T Consensus        71 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~lH~~-~ivH~Dlkp~NIll~~----------------  131 (321)
T cd05603          71 LYFVLDYVNGGELFFHLQR--ERCFLEPRARFYAAEVASAIGYLHSL-NIIYRDLKPENILLDS----------------  131 (321)
T ss_pred             EEEEEcCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeEECC----------------
Confidence            99999999 8899887763  34589999999999999999999997 9999999999999955                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (321)
T cd05603         132 --------------------------------------------------------------------------------  131 (321)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT  358 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt  358 (530)
                                          ++.+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++
T Consensus       132 --------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~  191 (321)
T cd05603         132 --------------------QGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLY  191 (321)
T ss_pred             --------------------CCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhc
Confidence                                4579999999986421   22344578999999999998889999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |.+||...+       ...+  ...+.                                       .....++...+..+
T Consensus       192 g~~pf~~~~-------~~~~--~~~i~---------------------------------------~~~~~~~~~~~~~~  223 (321)
T cd05603         192 GLPPFYSRD-------VSQM--YDNIL---------------------------------------HKPLQLPGGKTVAA  223 (321)
T ss_pred             CCCCCCCCC-------HHHH--HHHHh---------------------------------------cCCCCCCCCCCHHH
Confidence            999996432       1111  11111                                       11122344556789


Q ss_pred             HHHHhhccCcCCCCCcCH----HHHhcCCCCCC
Q 045988          439 ADFLVPILDFVPEKRPTA----AQCLTHPWINV  467 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta----~elL~hp~f~~  467 (530)
                      .+||.+||+.||.+|+++    .++++||||..
T Consensus       224 ~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~~  256 (321)
T cd05603         224 CDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSP  256 (321)
T ss_pred             HHHHHHHccCCHhhcCCCCCCHHHHhCCCCcCC
Confidence            999999999999999975    59999999975

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-43  Score=317.39  Aligned_cols=254  Identities=28%  Similarity=0.405  Sum_probs=203.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc-ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++.||.|.++||+|||+.||++....+++.||+|.+.-. ....+..++|++..+++      +||||++++++......
T Consensus        19 n~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf------~s~~vl~l~dh~l~~~~   92 (302)
T KOG2345|consen   19 NNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKF------NSPNVLRLVDHQLREEK   92 (302)
T ss_pred             cCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhh------CCcchHHHHHHHHHhhc
Confidence            578999999999999999999999999999999976543 35678889999999999      78889999998765433


Q ss_pred             -CCcEEEEEEecc-CcCHHHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHHhhCC--ceeccCCCCcEEEeeccCCCCC
Q 045988          119 -NGQHVCMVFEYL-GENLLTLIKYADYRG--VPLHMVKEICFHILVGLDHLHRELS--IIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       119 -~~~~~~lVmE~~-~~~L~~~i~~~~~~~--l~~~~~~~i~~qll~aL~~LH~~~g--IvHrDIKp~NILl~~~~~~~~~  192 (530)
                       .....||+++|+ .|+|.+.+.....++  +++.++.+|+.+|+.||++||+. .  ++||||||.|||+.+       
T Consensus        93 D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~-------  164 (302)
T KOG2345|consen   93 DGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSD-------  164 (302)
T ss_pred             cCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecC-------
Confidence             335799999999 999999998765544  99999999999999999999996 7  999999999999955       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (302)
T KOG2345|consen  165 --------------------------------------------------------------------------------  164 (302)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc------------cccCCCCCCCCccCChhhcCCC-
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY------------KQFTNDIQTRQYRCPEVLLGSK-  339 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~------------~~~~~~~gt~~y~aPE~l~~~~-  339 (530)
                                                   .+.++|.|||.++...            +...+..+|..|+|||.+.-+. 
T Consensus       165 -----------------------------~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~  215 (302)
T KOG2345|consen  165 -----------------------------SGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSH  215 (302)
T ss_pred             -----------------------------CCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccC
Confidence                                         4578999999996532            1234446799999999997543 


Q ss_pred             --CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          340 --YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       340 --~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                        .+.++|||||||+||.|+.|..||+..-..                                    .+.+.-      
T Consensus       216 ~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~------------------------------------GgSlaL------  253 (302)
T KOG2345|consen  216 CTITERTDIWSLGCTLYAMMFGESPFERIYQQ------------------------------------GGSLAL------  253 (302)
T ss_pred             cccccccchhhhhHHHHHHHHcCCcchHHhhc------------------------------------CCeEEE------
Confidence              688999999999999999999999532110                                    000000      


Q ss_pred             CCchhhhhhhcc--CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          418 WPLNKVLIEKYD--FSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       418 ~~~~~~~~~~~~--~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                          .+...++.  -....+..+.+||+.||+.||.+||++.+++.+
T Consensus       254 ----Av~n~q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  254 ----AVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             ----eeeccccccCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHH
Confidence                00011111  122367899999999999999999999999875

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-43  Score=327.59  Aligned_cols=267  Identities=25%  Similarity=0.406  Sum_probs=212.7

Q ss_pred             EEE-EEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           44 YVV-QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        44 y~i-~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      |++ .+.||+|+|+.|--|....+|+.||+|++.+.. +...++.+|++++.++.     .|+||++++++|+    ++.
T Consensus        79 YkLt~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cq-----gh~nilqLiefFE----dd~  149 (463)
T KOG0607|consen   79 YKLTSELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQ-----GHKNILQLIEFFE----DDT  149 (463)
T ss_pred             HHhHHHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhc-----CCccHHHHHHHhc----ccc
Confidence            444 477999999999999999999999999988764 45678899999999987     8999999999999    558


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      .+|||||.| ||.|+..|.....  +++.++.++++.|+.||+|||.+ ||.||||||+|||-.+...            
T Consensus       150 ~FYLVfEKm~GGplLshI~~~~~--F~E~EAs~vvkdia~aLdFlH~k-gIAHRDlKPENiLC~~pn~------------  214 (463)
T KOG0607|consen  150 RFYLVFEKMRGGPLLSHIQKRKH--FNEREASRVVKDIASALDFLHTK-GIAHRDLKPENILCESPNK------------  214 (463)
T ss_pred             eEEEEEecccCchHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHhhc-CcccccCCccceeecCCCC------------
Confidence            999999999 9999999986554  99999999999999999999998 9999999999999854110            


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (463)
T KOG0607|consen  215 --------------------------------------------------------------------------------  214 (463)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccc----------cccccCCCCCCCCccCChhhc---C--CCCCCcch
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACW----------TYKQFTNDIQTRQYRCPEVLL---G--SKYSTPAD  345 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~----------~~~~~~~~~gt~~y~aPE~l~---~--~~~~~~~D  345 (530)
                                           -.-||||||.+..-          ......+.+|+..|||||+..   +  ..|+.+.|
T Consensus       215 ---------------------vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCD  273 (463)
T KOG0607|consen  215 ---------------------VSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCD  273 (463)
T ss_pred             ---------------------cCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhcccccccccccc
Confidence                                 12389999988742          123355678999999999864   2  34899999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      .||||||||-||+|.+||.+....+-..+..                              ...+.-...   -+..|-.
T Consensus       274 lwSLGvIlYImLsGYpPFvG~Cg~dCGWdrG------------------------------e~Cr~CQ~~---LFesIQE  320 (463)
T KOG0607|consen  274 LWSLGVILYIMLSGYPPFVGHCGADCGWDRG------------------------------EVCRVCQNK---LFESIQE  320 (463)
T ss_pred             HHHHHHHHHHHHhCCCCccCccCCcCCccCC------------------------------CccHHHHHH---HHHHHhc
Confidence            9999999999999999998876543321110                              000000000   0233444


Q ss_pred             hhccCCh----hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          426 EKYDFSE----KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       426 ~~~~~~~----~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ..+.||.    .++.+.+|||..+|..|+.+|.+|.++|+|||++..
T Consensus       321 GkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnhPw~~~~  367 (463)
T KOG0607|consen  321 GKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQRC  367 (463)
T ss_pred             cCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCCcccccc
Confidence            5556654    467889999999999999999999999999999864

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=8.5e-42  Score=375.59  Aligned_cols=278  Identities=22%  Similarity=0.368  Sum_probs=209.1

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      |+.+ .++|.++++||+|+||+||+|.+..++..||+|++....   .....+.+|+.+|++|      .|||||+++++
T Consensus         8 ge~~-l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L------~HPNIVrl~d~   80 (1021)
T PTZ00266          8 GESR-LNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMREL------KHKNIVRYIDR   80 (1021)
T ss_pred             Cccc-cCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHc------CCCCcCeEEEE
Confidence            4555 579999999999999999999999999999999887532   2345678899999999      78889999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhh------CCceeccCCCCcEEE
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRE------LSIIHTDLKPENVLL  183 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~------~gIvHrDIKp~NILl  183 (530)
                      |...  ....+||||||+ +++|..+|....  ...+++..++.|+.||+.||+|||+.      .+||||||||+||||
T Consensus        81 f~de--~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL  158 (1021)
T PTZ00266         81 FLNK--ANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFL  158 (1021)
T ss_pred             EEec--CCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEe
Confidence            8754  346899999999 889999986532  24599999999999999999999983      149999999999999


Q ss_pred             eeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 045988          184 MSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSV  263 (530)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (530)
                      ............                                                                    
T Consensus       159 ~s~~~~lg~i~~--------------------------------------------------------------------  170 (1021)
T PTZ00266        159 STGIRHIGKITA--------------------------------------------------------------------  170 (1021)
T ss_pred             ecCccccccccc--------------------------------------------------------------------
Confidence            542100000000                                                                    


Q ss_pred             ccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcC--CC
Q 045988          264 EDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLG--SK  339 (530)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~--~~  339 (530)
                                                     ..........++|+|||++.....  .....+||+.|+|||++.+  ..
T Consensus       171 -------------------------------~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~  219 (1021)
T PTZ00266        171 -------------------------------QANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKS  219 (1021)
T ss_pred             -------------------------------cccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCC
Confidence                                           000000134589999999965432  2345679999999999965  34


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      ++.++||||||||||+|++|.+||....      ....   ++..+...|.                             
T Consensus       220 ~s~KSDVWSLG~ILYELLTGk~PF~~~~------~~~q---li~~lk~~p~-----------------------------  261 (1021)
T PTZ00266        220 YDDKSDMWALGCIIYELCSGKTPFHKAN------NFSQ---LISELKRGPD-----------------------------  261 (1021)
T ss_pred             CCchhHHHHHHHHHHHHHHCCCCCCcCC------cHHH---HHHHHhcCCC-----------------------------
Confidence            8999999999999999999999996322      1111   1111111100                             


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                               ......+.++.+||..||.++|.+||++.|+|.||||+..
T Consensus       262 ---------lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i  301 (1021)
T PTZ00266        262 ---------LPIKGKSKELNILIKNLLNLSAKERPSALQCLGYQIIKNV  301 (1021)
T ss_pred             ---------CCcCCCCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhc
Confidence                     0011235789999999999999999999999999999754

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=4.4e-43  Score=354.19  Aligned_cols=244  Identities=27%  Similarity=0.390  Sum_probs=198.3

Q ss_pred             EEeccccceEEEEEEeC---CCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           48 SKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      +.||+|+||.||++++.   .+|+.||+|++.....   ......+|+++|+++      +||||++++++|.    ...
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~----~~~   71 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEV------NHPFIVKLHYAFQ----TEG   71 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhC------CCCCcccEEEEEE----cCC
Confidence            67999999999999863   5789999999876432   234567799999998      7889999999998    457


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      .+|+||||+ +++|.+++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.               
T Consensus        72 ~~~lv~e~~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~---------------  133 (318)
T cd05582          72 KLYLILDFLRGGDLFTRLSK--EVMFTEEDVKFYLAELALALDHLHSL-GIIYRDLKPENILLDE---------------  133 (318)
T ss_pred             EEEEEEcCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHeEECC---------------
Confidence            899999999 8999998864  34589999999999999999999997 9999999999999954               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (318)
T cd05582         134 --------------------------------------------------------------------------------  133 (318)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                           ++.++|+|||++.....   ......||+.|+|||++.+..++.++|||||||++|+|+
T Consensus       134 ---------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~  192 (318)
T cd05582         134 ---------------------EGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEML  192 (318)
T ss_pred             ---------------------CCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeec
Confidence                                 45699999999865322   233457899999999999888999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|..||....      ....+..+.                                          .....++...++.
T Consensus       193 tg~~p~~~~~------~~~~~~~i~------------------------------------------~~~~~~p~~~~~~  224 (318)
T cd05582         193 TGSLPFQGKD------RKETMTMIL------------------------------------------KAKLGMPQFLSPE  224 (318)
T ss_pred             cCCCCCCCCC------HHHHHHHHH------------------------------------------cCCCCCCCCCCHH
Confidence            9999996432      111111111                                          1112234456788


Q ss_pred             HHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      +.+||++||+.||.+||+     +.+++.||||...
T Consensus       225 ~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~  260 (318)
T cd05582         225 AQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTI  260 (318)
T ss_pred             HHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCC
Confidence            999999999999999999     7889999999864

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.6e-43  Score=353.60  Aligned_cols=245  Identities=26%  Similarity=0.388  Sum_probs=192.3

Q ss_pred             eccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           50 LGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        50 LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ||+|+||+||+|++..+++.||||++.+...    .......|..++.++..   ..||||+++++.|.    ....+|+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~---~~~p~i~~~~~~~~----~~~~~~l   73 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLL---DESPFIVGLKFSFQ----TDSDLYL   73 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhcc---CCCCcCcceEEEEe----cCCeEEE
Confidence            7999999999999999999999999865321    22334556677665532   26899999999998    4578999


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccc
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLT  204 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~  204 (530)
                      ||||+ +++|..++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.                   
T Consensus        74 v~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~qil~al~~LH~~-~ivHrDlkp~Nili~~-------------------  131 (330)
T cd05586          74 VTDYMSGGELFWHLQK--EGRFSEDRAKFYIAELVLALEHLHKY-DIVYRDLKPENILLDA-------------------  131 (330)
T ss_pred             EEcCCCCChHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeEECC-------------------
Confidence            99999 8899888864  34599999999999999999999997 9999999999999954                   


Q ss_pred             ccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 045988          205 KKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK  284 (530)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (330)
T cd05586         132 --------------------------------------------------------------------------------  131 (330)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHHHHHhCC
Q 045988          285 DCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGD  360 (530)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~elltG~  360 (530)
                                       ++.++|+|||++....   ......+||+.|+|||++.+. .++.++|||||||++|+|++|.
T Consensus       132 -----------------~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~  194 (330)
T cd05586         132 -----------------TGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGW  194 (330)
T ss_pred             -----------------CCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCC
Confidence                             4569999999986432   223456799999999999764 4899999999999999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC-hhcHHHHH
Q 045988          361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS-EKDANDMA  439 (530)
Q Consensus       361 ~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  439 (530)
                      .||.+..      .......+.  .+                                        ...++ ...++++.
T Consensus       195 ~Pf~~~~------~~~~~~~i~--~~----------------------------------------~~~~~~~~~~~~~~  226 (330)
T cd05586         195 SPFYAED------TQQMYRNIA--FG----------------------------------------KVRFPKNVLSDEGR  226 (330)
T ss_pred             CCCCCCC------HHHHHHHHH--cC----------------------------------------CCCCCCccCCHHHH
Confidence            9996432      111111110  00                                        00111 12467889


Q ss_pred             HHHhhccCcCCCCCc----CHHHHhcCCCCCCC
Q 045988          440 DFLVPILDFVPEKRP----TAAQCLTHPWINVG  468 (530)
Q Consensus       440 dLl~~mL~~dP~~Rp----ta~elL~hp~f~~~  468 (530)
                      +||.+||+.||.+||    ++.++++||||...
T Consensus       227 ~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~  259 (330)
T cd05586         227 QFVKGLLNRNPQHRLGAHRDAVELKEHPFFADI  259 (330)
T ss_pred             HHHHHHcCCCHHHCCCCCCCHHHHhcCccccCC
Confidence            999999999999998    79999999999864

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=1.1e-41  Score=337.80  Aligned_cols=277  Identities=32%  Similarity=0.532  Sum_probs=214.6

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++++.||.|+||.||+|++..+++.||||.+....   .....+.+|+++++++      +||||+++++++.    .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~----~   70 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL------NHPNIVKLLDVIH----T   70 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhc------CCCCCcchhhhcc----c
Confidence            4899999999999999999999999999999876542   2235678899999999      7888999999988    4


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      +...++||||+.++|.+++.......+++..+..++.||+.||+|||++ ||+||||+|+||+++.              
T Consensus        71 ~~~~~~v~e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~-~i~H~~l~p~nill~~--------------  135 (284)
T cd07860          71 ENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH-RVLHRDLKPQNLLINT--------------  135 (284)
T ss_pred             CCcEEEEeeccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEECC--------------
Confidence            5789999999988899988765556689999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (284)
T cd07860         136 --------------------------------------------------------------------------------  135 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~e  355 (530)
                                            ++.++|+|||.+.....   ......+++.|+|||++.+.. ++.++|||||||++|+
T Consensus       136 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~  193 (284)
T cd07860         136 ----------------------EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAE  193 (284)
T ss_pred             ----------------------CCCEEEeeccchhhcccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHH
Confidence                                  45699999999865332   223445788999999987654 6889999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||.+.+      ....+..+.+.++..+...+........+.....   .      +.... . .  ......+
T Consensus       194 l~tg~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~-~-~--~~~~~~~  254 (284)
T cd07860         194 MVTRRALFPGDS------EIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFP---K------WARQD-F-S--KVVPPLD  254 (284)
T ss_pred             HHHCCCCCCCCC------HHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcc---c------ccccC-H-H--HHcccCC
Confidence            999999996543      4556677777777666554322110000000000   0      00000 0 0  0112346


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ..+.+||.+||+.||.+|||+.++|.||||
T Consensus       255 ~~~~~li~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         255 EDGRDLLSQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             HHHHHHHHHhcCCCcccCCCHHHHhcCCCC
Confidence            778999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1e-41  Score=363.04  Aligned_cols=258  Identities=25%  Similarity=0.314  Sum_probs=206.1

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|.+.+.||+|+||+||+|.+..+++.||||++....   .....+.+|+.++..+      .|+||+++++.|....
T Consensus        31 ~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~------~h~~iv~~~~~~~~~~  104 (496)
T PTZ00283         31 AKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNC------DFFSIVKCHEDFAKKD  104 (496)
T ss_pred             CCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcC------CCCcEEEeecceeccc
Confidence            579999999999999999999999999999999986542   2344567788888877      7888999998876542


Q ss_pred             CC----CcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          118 PN----GQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       118 ~~----~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ..    ...+++||||+ +++|.+++....  ...+++..+..++.||+.||+|||++ ||+||||||+|||++.     
T Consensus       105 ~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~-~IiHrDLKP~NILl~~-----  178 (496)
T PTZ00283        105 PRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK-HMIHRDIKSANILLCS-----  178 (496)
T ss_pred             ccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEeC-----
Confidence            11    12578999999 899999886432  24589999999999999999999997 9999999999999965     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (496)
T PTZ00283        179 --------------------------------------------------------------------------------  178 (496)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcCCCCCCcch
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                     ++.+||+|||++.....     .....+||+.|+|||++.+..|+.++|
T Consensus       179 -------------------------------~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~D  227 (496)
T PTZ00283        179 -------------------------------NGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKAD  227 (496)
T ss_pred             -------------------------------CCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHH
Confidence                                           45799999999865322     123457999999999999989999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|+|++|..||.+..      ....+.   ..+..                                      
T Consensus       228 VwSlGvilyeLltG~~Pf~~~~------~~~~~~---~~~~~--------------------------------------  260 (496)
T PTZ00283        228 MFSLGVLLYELLTLKRPFDGEN------MEEVMH---KTLAG--------------------------------------  260 (496)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCC------HHHHHH---HHhcC--------------------------------------
Confidence            9999999999999999996432      111111   11000                                      


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ....++...++++.+||.+||+.||.+||++.++|+|||++..
T Consensus       261 ~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~~  303 (496)
T PTZ00283        261 RYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNMPICKLF  303 (496)
T ss_pred             CCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhCHHHHHh
Confidence            0001234557889999999999999999999999999998754

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=1e-42  Score=352.66  Aligned_cols=244  Identities=23%  Similarity=0.309  Sum_probs=193.6

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHH-HHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKI-LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~i-l~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      +.||+|+||+||+|.+..+|+.||+|++.+..    .....+..|..+ ++.+      .||||++++++|.    ....
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~------~hp~iv~~~~~~~----~~~~   70 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNV------KHPFLVGLHYSFQ----TTEK   70 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhC------CCCCCccEEEEEe----cCCE
Confidence            46999999999999999999999999987542    122334455544 3444      7899999999998    4578


Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      .|+||||+ +++|...+..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.                
T Consensus        71 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH~~-givH~Dlkp~NIll~~----------------  131 (325)
T cd05604          71 LYFVLDFVNGGELFFHLQR--ERSFPEPRARFYAAEIASALGYLHSI-NIVYRDLKPENILLDS----------------  131 (325)
T ss_pred             EEEEEcCCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHeEECC----------------
Confidence            99999999 8899887763  34589999999999999999999997 9999999999999955                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (325)
T cd05604         132 --------------------------------------------------------------------------------  131 (325)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT  358 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt  358 (530)
                                          ++.++|+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++
T Consensus       132 --------------------~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~  191 (325)
T cd05604         132 --------------------QGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLY  191 (325)
T ss_pred             --------------------CCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhc
Confidence                                4579999999986422   22345579999999999999899999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |.+||....      .......   ++                                       .....+....+..+
T Consensus       192 G~~pf~~~~------~~~~~~~---~~---------------------------------------~~~~~~~~~~~~~~  223 (325)
T cd05604         192 GLPPFYCRD------VAEMYDN---IL---------------------------------------HKPLVLRPGASLTA  223 (325)
T ss_pred             CCCCCCCCC------HHHHHHH---HH---------------------------------------cCCccCCCCCCHHH
Confidence            999996432      1111111   11                                       11112233456788


Q ss_pred             HHHHhhccCcCCCCCcCH----HHHhcCCCCCCC
Q 045988          439 ADFLVPILDFVPEKRPTA----AQCLTHPWINVG  468 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta----~elL~hp~f~~~  468 (530)
                      .+||.+||..||.+||++    .+++.||||+..
T Consensus       224 ~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~  257 (325)
T cd05604         224 WSILEELLEKDRQRRLGAKEDFLEIQEHPFFESL  257 (325)
T ss_pred             HHHHHHHhccCHHhcCCCCCCHHHHhcCCCcCCC
Confidence            999999999999999986    599999999863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=1.7e-42  Score=351.03  Aligned_cols=244  Identities=23%  Similarity=0.311  Sum_probs=193.2

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHH-HHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKI-LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~i-l~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      +.||+|+||+||+|++..+++.||+|++.....    ....+..|..+ ++.+      .||||++++++|.    ....
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~------~h~~Iv~~~~~~~----~~~~   70 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNV------KHPFLVGLHFSFQ----TADK   70 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhC------CCCCCCceeEEEE----cCCe
Confidence            479999999999999999999999999875431    12233444443 3444      7899999999998    4578


Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      +|+||||+ +++|..++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.                
T Consensus        71 ~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~-giiHrDlkp~Nili~~----------------  131 (325)
T cd05602          71 LYFVLDYINGGELFYHLQR--ERCFLEPRARFYAAEIASALGYLHSL-NIVYRDLKPENILLDS----------------  131 (325)
T ss_pred             EEEEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEECC----------------
Confidence            99999999 8899988864  34588999999999999999999997 9999999999999954                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (325)
T cd05602         132 --------------------------------------------------------------------------------  131 (325)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT  358 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt  358 (530)
                                          ++.++|+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++
T Consensus       132 --------------------~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~  191 (325)
T cd05602         132 --------------------QGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLY  191 (325)
T ss_pred             --------------------CCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhc
Confidence                                4569999999986422   22345579999999999999899999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |.+||....      .......+.                                          .....+....+..+
T Consensus       192 g~~pf~~~~------~~~~~~~i~------------------------------------------~~~~~~~~~~~~~~  223 (325)
T cd05602         192 GLPPFYSRN------TAEMYDNIL------------------------------------------NKPLQLKPNITNSA  223 (325)
T ss_pred             CCCCCCCCC------HHHHHHHHH------------------------------------------hCCcCCCCCCCHHH
Confidence            999996432      111111111                                          11112334567889


Q ss_pred             HHHHhhccCcCCCCCcCHH----HHhcCCCCCCC
Q 045988          439 ADFLVPILDFVPEKRPTAA----QCLTHPWINVG  468 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta~----elL~hp~f~~~  468 (530)
                      .+||.+||+.||.+|+++.    ++++|+||...
T Consensus       224 ~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~~~  257 (325)
T cd05602         224 RHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPI  257 (325)
T ss_pred             HHHHHHHcccCHHHCCCCCCCHHHHhcCcccCCC
Confidence            9999999999999999876    89999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=1.9e-41  Score=336.87  Aligned_cols=256  Identities=24%  Similarity=0.345  Sum_probs=205.7

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .|++.+.||+|+||+||+|.+..+++.||+|++....    .....+.+|+.+|+++      .|++|+.+++.|.    
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l------~~~~i~~~~~~~~----   70 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKV------NSQFVVNLAYAYE----   70 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHc------CCcCceeEEEEEe----
Confidence            4788999999999999999999999999999886542    1234467899999999      6788999999988    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .+...|+||||+ +++|..++.......+++..+..++.||+.||.|||++ ||+||||||+|||++.            
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~-~iiH~dikp~Nili~~------------  137 (285)
T cd05632          71 TKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE-NTVYRDLKPENILLDD------------  137 (285)
T ss_pred             cCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCCHHHEEECC------------
Confidence            457899999999 78898888655555699999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (285)
T cd05632         138 --------------------------------------------------------------------------------  137 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                              ...++|+|||++.....  ......|+..|+|||++.+..++.++|||||||++|+
T Consensus       138 ------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~  193 (285)
T cd05632         138 ------------------------YGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYE  193 (285)
T ss_pred             ------------------------CCCEEEecCCcceecCCCCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHH
Confidence                                    45699999999865322  2344578999999999998889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....      .......+.....                                      .....++...+
T Consensus       194 l~~g~~P~~~~~------~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~  229 (285)
T cd05632         194 MIEGQSPFRGRK------EKVKREEVDRRVL--------------------------------------ETEEVYSAKFS  229 (285)
T ss_pred             HHhCCCCCCCCC------HHHHHHHHHHhhh--------------------------------------ccccccCccCC
Confidence            999999996432      1111111111100                                      00011233456


Q ss_pred             HHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVGP  469 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~~  469 (530)
                      ..+.+|+.+||..||.+||+     +.+++.||||+...
T Consensus       230 ~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~  268 (285)
T cd05632         230 EEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMN  268 (285)
T ss_pred             HHHHHHHHHHccCCHhHcCCCcccChHHHHcChhhhcCC
Confidence            78899999999999999999     89999999998754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=3.2e-41  Score=337.07  Aligned_cols=282  Identities=33%  Similarity=0.477  Sum_probs=216.7

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccc------hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY------TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~------~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      +|++.+.||+|+||.||+|.+..+++.||||.+......      ...+..|+.+++++      .|+||+++++++.  
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~--   72 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQEL------KHPNIIGLLDVFG--   72 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhc------CCCCChhhhheee--
Confidence            589999999999999999999999999999988765322      34556799999988      7888999999998  


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        .....++||||++++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        73 --~~~~~~lv~e~~~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dl~p~nill~~-----------  137 (298)
T cd07841          73 --HKSNINLVFEFMETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSN-WILHRDLKPNNLLIAS-----------  137 (298)
T ss_pred             --cCCEEEEEEcccCCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCChhhEEEcC-----------
Confidence              457899999999889999986433 3589999999999999999999997 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (298)
T cd07841         138 --------------------------------------------------------------------------------  137 (298)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcC-CCCCCcchhHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACI  352 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~i  352 (530)
                                               ++.++|+|||++......   .....+++.|+|||.+.+ ..++.++|||||||+
T Consensus       138 -------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~i  192 (298)
T cd07841         138 -------------------------DGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCI  192 (298)
T ss_pred             -------------------------CCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHH
Confidence                                     457999999999754322   233456889999999865 457899999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|.+||....      ..+.+..+...++.+....+........+. ...        ...+ ..    ......
T Consensus       193 l~e~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~-~~----~~~~~~  252 (298)
T cd07841         193 FAELLLRVPFLPGDS------DIDQLGKIFEALGTPTEENWPGVTSLPDYV-EFK--------PFPP-TP----LKQIFP  252 (298)
T ss_pred             HHHHHcCCccccCCc------cHHHHHHHHHHcCCCchhhhhhcccccccc-ccc--------ccCC-cc----hhhhcc
Confidence            999999988886533      445566666666655544332211110000 000        0000 00    001123


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLL  472 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~  472 (530)
                      ..+..+.+||.+||.+||.+|||+.|+|.||||+..+...
T Consensus       253 ~~~~~~~~li~~~l~~~P~~R~s~~e~l~~~~~~~~~~~~  292 (298)
T cd07841         253 AASDDALDLLQRLLTLNPNKRITARQALEHPYFSNDPAPT  292 (298)
T ss_pred             cccHHHHHHHHHHhcCCcccCcCHHHHhhCccccCCCCCC
Confidence            4567899999999999999999999999999999877644

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=1.2e-41  Score=335.41  Aligned_cols=257  Identities=26%  Similarity=0.404  Sum_probs=205.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC-
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN-  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~-  119 (530)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++.........+.+|+.+++++.     +|+||+++++.|...... 
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~~~~~~~~~~   79 (272)
T cd06637           5 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYS-----HHRNIATYYGAFIKKNPPG   79 (272)
T ss_pred             hhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhc-----CCCCeeeEeeEEeecCCCC
Confidence            47899999999999999999999999999999998776655667889999998884     588999999998764322 


Q ss_pred             -CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          120 -GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       120 -~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ...+|+||||+ +++|.+++.......+++..+..++.||+.||+|||++ +|+||||||+||+++.            
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~-~ivh~dl~~~nili~~------------  146 (272)
T cd06637          80 MDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH-KVIHRDIKGQNVLLTE------------  146 (272)
T ss_pred             CCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCCHHHEEECC------------
Confidence             35799999999 78999998765555689999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (272)
T cd06637         147 --------------------------------------------------------------------------------  146 (272)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhc-----CCCCCCcchhHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLL-----GSKYSTPADLWSF  349 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~-----~~~~~~~~DiWSl  349 (530)
                                              +..++|+|||++.....   ......|++.|+|||++.     +..|+.++|||||
T Consensus       147 ------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl  202 (272)
T cd06637         147 ------------------------NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSL  202 (272)
T ss_pred             ------------------------CCCEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHH
Confidence                                    45699999999865432   233457899999999986     3358889999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|..||....         ............                                     ....
T Consensus       203 Gv~l~el~~g~~p~~~~~---------~~~~~~~~~~~~-------------------------------------~~~~  236 (272)
T cd06637         203 GITAIEMAEGAPPLCDMH---------PMRALFLIPRNP-------------------------------------APRL  236 (272)
T ss_pred             HHHHHHHHhCCCCccccC---------HHHHHHHHhcCC-------------------------------------CCCC
Confidence            999999999999995321         011000000000                                     0000


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .....+..+.+||.+||..||.+|||+.+++.||||
T Consensus       237 ~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~~  272 (272)
T cd06637         237 KSKKWSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI  272 (272)
T ss_pred             CCCCcCHHHHHHHHHHcCCChhhCCCHHHHhhCCCC
Confidence            112345688999999999999999999999999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-41  Score=334.74  Aligned_cols=282  Identities=31%  Similarity=0.501  Sum_probs=213.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|++.+.||+|+||.||+|.++.+++.||||.+....  .....+.+|+.+++++      +|+||+++++++.    
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~----   73 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDL------KHANIVTLHDIIH----   73 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhC------CCcceeeEEEEEe----
Confidence            478999999999999999999999999999999876542  2234567899999999      7888999999988    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ...+.|+||||++++|.+++.... ..+++..++.++.||+.||.|||++ ||+||||||+|||++.             
T Consensus        74 ~~~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH~~-~i~H~dl~p~nil~~~-------------  138 (291)
T cd07844          74 TKKTLTLVFEYLDTDLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCHQR-RVLHRDLKPQNLLISE-------------  138 (291)
T ss_pred             cCCeEEEEEecCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeecccCCHHHEEEcC-------------
Confidence            457999999999879999886433 3589999999999999999999997 9999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (291)
T cd07844         139 --------------------------------------------------------------------------------  138 (291)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                             ++.++|+|||.+.....   ......++..|+|||++.+ ..++.++||||+||++|
T Consensus       139 -----------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~  195 (291)
T cd07844         139 -----------------------RGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFY  195 (291)
T ss_pred             -----------------------CCCEEECccccccccCCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHH
Confidence                                   45699999999865321   1223356889999999876 45899999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|..||....     ...+.+..+.+.++.+....+........+.....        ....... ...... .-..
T Consensus       196 ~l~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~-~~~~  260 (291)
T cd07844         196 EMATGRPLFPGST-----DVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSF--------PFYPPRP-LINHAP-RLDR  260 (291)
T ss_pred             HHHhCCCCCCCCc-----cHHHHHHHHHHhcCCCChhhhhhhhhccccccccc--------cccCChh-HHHhCc-CCCC
Confidence            9999999996432     13456677777777766554432221111100000        0000000 001000 0011


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ..++.+||.+||++||.+|||+.|+|.||||
T Consensus       261 ~~~~~~li~~~L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         261 IPHGEELALKFLQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             chhHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            2678899999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=1.6e-41  Score=344.85  Aligned_cols=256  Identities=20%  Similarity=0.348  Sum_probs=198.3

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.++||+|+||.||++.+..+++.||+|++.+..    .....+..|+.++..+      .|++|+++++.+.   
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~---   71 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG------DNQWITTLHYAFQ---   71 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhC------CCCCEeeEEEEEe---
Confidence            47999999999999999999999999999999986532    2233456788887776      7888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       +...+|+||||+ +++|.+++.... ..+++..++.++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~~~~qi~~al~~lH~~-~iiHrDlkp~Nili~~-----------  137 (332)
T cd05623          72 -DENNLYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVIAIDSVHQL-HYVHRDIKPDNILMDM-----------  137 (332)
T ss_pred             -cCCEEEEEEeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHEEECC-----------
Confidence             457899999999 899999997532 3489999999999999999999996 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (332)
T cd05623         138 --------------------------------------------------------------------------------  137 (332)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhc-----CCCCCCcchhH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLL-----GSKYSTPADLW  347 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~-----~~~~~~~~DiW  347 (530)
                                               ++.++|+|||++......    ....+||+.|+|||++.     ...++.++|||
T Consensus       138 -------------------------~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Dvw  192 (332)
T cd05623         138 -------------------------NGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWW  192 (332)
T ss_pred             -------------------------CCCEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEE
Confidence                                     456999999998643211    22357999999999986     34588999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|..||...+         ....+..+...... .                                 ..
T Consensus       193 SlGvil~ell~g~~Pf~~~~---------~~~~~~~i~~~~~~-~---------------------------------~~  229 (332)
T cd05623         193 SLGVCMYEMLYGETPFYAES---------LVETYGKIMNHKER-F---------------------------------QF  229 (332)
T ss_pred             eeHHHHHHHhcCCCCCCCCC---------HHHHHHHHhCCCcc-c---------------------------------cC
Confidence            99999999999999996432         11111111110000 0                                 00


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCC--CcCHHHHhcCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEK--RPTAAQCLTHPWINVG  468 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~--Rpta~elL~hp~f~~~  468 (530)
                      .......++++.+||++||+.++.+  |+++.|+++||||..-
T Consensus       230 p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~~  272 (332)
T cd05623         230 PAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGI  272 (332)
T ss_pred             CCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCCC
Confidence            0111235688999999999765554  6899999999999853

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-43  Score=351.88  Aligned_cols=251  Identities=24%  Similarity=0.373  Sum_probs=209.6

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .|.-++.||.|+||.||-|++..+...||||.+.-+    ......++.|++.|.+|      .|||+|.+-++|.    
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l------~HPntieYkgCyL----   96 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQL------RHPNTIEYKGCYL----   96 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhc------cCCCcccccceee----
Confidence            577789999999999999999999999999976532    34467788999999999      7888999999998    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      .....|||||||-|+-.+++.-++ .++.+-++..|+.+.+.||+|||+. +.||||||..|||++.             
T Consensus        97 re~TaWLVMEYClGSAsDlleVhk-KplqEvEIAAi~~gaL~gLaYLHS~-~~IHRDiKAGNILLse-------------  161 (948)
T KOG0577|consen   97 REHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSH-NRIHRDIKAGNILLSE-------------  161 (948)
T ss_pred             ccchHHHHHHHHhccHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHh-hHHhhhccccceEecC-------------
Confidence            457899999999777777776544 4599999999999999999999997 9999999999999966             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (948)
T KOG0577|consen  162 --------------------------------------------------------------------------------  161 (948)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhc---CCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLL---GSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~---~~~~~~~~DiWSlG~il~e  355 (530)
                                             .+.|||+|||.|.... +..+++|||+|||||+++   .+.|+-++||||||+++.|
T Consensus       162 -----------------------~g~VKLaDFGSAsi~~-PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIE  217 (948)
T KOG0577|consen  162 -----------------------PGLVKLADFGSASIMA-PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE  217 (948)
T ss_pred             -----------------------CCeeeeccccchhhcC-chhcccCCccccchhHheeccccccCCccceeeccchhhh
Confidence                                   5789999999997653 456789999999999997   3469999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |...+||+-         +...+..++.+..+.++.+                                     .....+
T Consensus       218 LAERkPPlF---------nMNAMSALYHIAQNesPtL-------------------------------------qs~eWS  251 (948)
T KOG0577|consen  218 LAERKPPLF---------NMNAMSALYHIAQNESPTL-------------------------------------QSNEWS  251 (948)
T ss_pred             hhhcCCCcc---------CchHHHHHHHHHhcCCCCC-------------------------------------CCchhH
Confidence            999999863         3334444444433222211                                     134567


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +.|+.|+..||+.-|.+|||++++|+|+|+...
T Consensus       252 ~~F~~Fvd~CLqKipqeRptse~ll~H~fv~R~  284 (948)
T KOG0577|consen  252 DYFRNFVDSCLQKIPQERPTSEELLKHRFVLRE  284 (948)
T ss_pred             HHHHHHHHHHHhhCcccCCcHHHHhhcchhccC
Confidence            899999999999999999999999999998754

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=1.8e-41  Score=335.60  Aligned_cols=248  Identities=27%  Similarity=0.382  Sum_probs=196.4

Q ss_pred             eccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           50 LGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        50 LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ||+|+||.||+|.++.+|+.||+|.+.....    .......|+++++++      +||||+++++.|.    .+.+.|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l------~hp~i~~~~~~~~----~~~~~~l   70 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKV------NSPFIVNLAYAFE----SKTHLCL   70 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhc------CCCcEEEEEEEEe----cCCeEEE
Confidence            7999999999999999999999998864321    233456799999998      7888999999998    4578999


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccc
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLT  204 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~  204 (530)
                      ||||+ +++|..++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.                   
T Consensus        71 v~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dikp~Nili~~-------------------  130 (277)
T cd05607          71 VMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSM-DIVYRDMKPENVLLDD-------------------  130 (277)
T ss_pred             EEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC-CEEEccCChHhEEEcC-------------------
Confidence            99999 88998888655555689999999999999999999997 9999999999999954                   


Q ss_pred             ccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 045988          205 KKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK  284 (530)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (530)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (277)
T cd05607         131 --------------------------------------------------------------------------------  130 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCC
Q 045988          285 DCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL  362 (530)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~P  362 (530)
                                       +..++|+|||++.....  ......|++.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       131 -----------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p  193 (277)
T cd05607         131 -----------------QGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTP  193 (277)
T ss_pred             -----------------CCCEEEeeceeeeecCCCceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCC
Confidence                             45689999999865432  22345789999999999988899999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc-CChhcHHHHHHH
Q 045988          363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD-FSEKDANDMADF  441 (530)
Q Consensus       363 F~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dL  441 (530)
                      |......     ............                                       .... .....+.++.+|
T Consensus       194 ~~~~~~~-----~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~l  229 (277)
T cd05607         194 FKDHKEK-----VAKEELKRRTLE---------------------------------------DEVKFEHQNFTEESKDI  229 (277)
T ss_pred             CCCCcch-----hhHHHHHHHhhc---------------------------------------cccccccccCCHHHHHH
Confidence            9643211     000000000000                                       0000 012346789999


Q ss_pred             HhhccCcCCCCCcCH----HHHhcCCCCCCC
Q 045988          442 LVPILDFVPEKRPTA----AQCLTHPWINVG  468 (530)
Q Consensus       442 l~~mL~~dP~~Rpta----~elL~hp~f~~~  468 (530)
                      |.+||+.||.+||++    .+++.||||+.-
T Consensus       230 i~~~L~~~P~~R~~~~~~~~~~~~h~~f~~~  260 (277)
T cd05607         230 CRLFLAKKPEDRLGSREKNDDPRKHEFFKTI  260 (277)
T ss_pred             HHHHhccCHhhCCCCccchhhhhcChhhcCC
Confidence            999999999999999    778899999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=6.3e-41  Score=336.47  Aligned_cols=289  Identities=28%  Similarity=0.433  Sum_probs=216.0

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      .++.+  ++|++.++||+|+||.||+|.+..+++.||||++....   .......+|+++++++      .||||+++++
T Consensus         7 ~~~~~--~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~   78 (310)
T cd07865           7 FCDEV--SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLL------KHENVVNLIE   78 (310)
T ss_pred             ccchh--hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhC------CCCCccceEE
Confidence            44444  68999999999999999999999999999999876432   2234556899999999      7888999999


Q ss_pred             eeeecCC----CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          112 HFKHSGP----NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       112 ~~~~~~~----~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      ++.....    .....++||||++++|.+++.... ..+++..+..++.||+.||+|||++ ||+|+||||+|||++.  
T Consensus        79 ~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~i~H~dl~p~nil~~~--  154 (310)
T cd07865          79 ICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKN-VKFTLSEIKKVMKMLLNGLYYIHRN-KILHRDMKAANILITK--  154 (310)
T ss_pred             EEecccccccCCCceEEEEEcCCCcCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEECC--
Confidence            8775421    235679999999889988886432 3589999999999999999999997 9999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (310)
T cd07865         155 --------------------------------------------------------------------------------  154 (310)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcCCC-
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLGSK-  339 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~~~-  339 (530)
                                                        .+.++|+|||++......       .....++..|+|||++.+.. 
T Consensus       155 ----------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  200 (310)
T cd07865         155 ----------------------------------DGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERD  200 (310)
T ss_pred             ----------------------------------CCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcc
Confidence                                              456999999998643221       22346788999999987654 


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      ++.++|||||||++|+|++|.+||.+..      ....+..+..+.|..+..++..... ...+........        
T Consensus       201 ~~~~~Di~slG~~l~el~t~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------  265 (310)
T cd07865         201 YGPPIDMWGAGCIMAEMWTRSPIMQGNT------EQHQLTLISQLCGSITPEVWPGVDK-LELFKKMELPQG--------  265 (310)
T ss_pred             cCchhhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChhhcccccc-hhhhhhccCCCc--------
Confidence            7899999999999999999999996543      4556667777788777665433211 111111000000        


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ......... .+...+..+.+||.+||+.||.+|||++|+|+||||
T Consensus       266 ~~~~~~~~l-~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h~~f  310 (310)
T cd07865         266 QKRKVKERL-KPYVKDPHALDLIDKLLVLDPAKRIDADTALNHDFF  310 (310)
T ss_pred             cchhhHHhc-ccccCCHHHHHHHHHHhcCChhhccCHHHHhcCCCC
Confidence            000000000 011234678899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=3.1e-41  Score=339.21  Aligned_cols=285  Identities=22%  Similarity=0.319  Sum_probs=207.4

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|++.++||+|+||.||+|.+..++..||+|++....  .....+.+|+++++++      .||||+++++.|.    .
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~----~   70 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHEC------NSPYIVGFYGAFY----S   70 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEe----e
Confidence            36999999999999999999999999999999877542  2345678899999999      7888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +..+|+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++.+|+||||||+|||++.             
T Consensus        71 ~~~~~lv~ey~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~-------------  135 (308)
T cd06615          71 DGEISICMEHMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNS-------------  135 (308)
T ss_pred             CCEEEEEeeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEec-------------
Confidence            57999999999 88999998744  458999999999999999999997448999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (308)
T cd06615         136 --------------------------------------------------------------------------------  135 (308)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                             ++.++|+|||.+..... ......|++.|+|||++.+..++.++|||||||++|+|+
T Consensus       136 -----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~  192 (308)
T cd06615         136 -----------------------RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMA  192 (308)
T ss_pred             -----------------------CCcEEEccCCCcccccccccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHH
Confidence                                   45689999999865322 234567899999999998888999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--cccccccCccccchhcccCCchhhhh-hhccCC-hh
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFNRHGDLRHIRRLRFWPLNKVLI-EKYDFS-EK  433 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~  433 (530)
                      +|..||....       ..   .....++..+..........  ...+............    ...... .....+ ..
T Consensus       193 ~g~~p~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  258 (308)
T cd06615         193 IGRYPIPPPD-------AK---ELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFEL----LDYIVNEPPPKLPSGA  258 (308)
T ss_pred             hCCCCCCCcc-------hh---hHHHhhcCccccccccCCcccccCCCCCccchhhHHHH----HHHHhcCCCccCcCcc
Confidence            9999996432       11   11122222111110000000  0000000000000000    000000 000111 12


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .+.++.+||.+||..||++|||+.++|+||||...
T Consensus       259 ~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~  293 (308)
T cd06615         259 FSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRA  293 (308)
T ss_pred             cCHHHHHHHHHHccCChhhCcCHHHHhcChhhhhc
Confidence            56789999999999999999999999999999753

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=3.6e-41  Score=334.30  Aligned_cols=277  Identities=32%  Similarity=0.509  Sum_probs=215.7

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++.+.||+|+||.||+|.+..+|+.||+|++....   .....+.+|+.+++++      .||||+++++++.    .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~----~   70 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQAC------QHPYVVKLLDVFP----H   70 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhC------CCCCCcceeeEEe----c
Confidence            5999999999999999999999999999999877543   2345778899999998      6888999999998    4


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      +...++||||++++|.+++.... ..+++..++.++.||+.||+|||++ ||+|+||||+||+++.              
T Consensus        71 ~~~~~~v~e~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~ni~~~~--------------  134 (286)
T cd07832          71 GSGFVLVMEYMPSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHAN-GIMHRDLKPANLLISA--------------  134 (286)
T ss_pred             CCeeEEEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCcCHHHEEEcC--------------
Confidence            57899999999999999886543 5589999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (286)
T cd07832         135 --------------------------------------------------------------------------------  134 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICF  354 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~  354 (530)
                                            ...++|+|||.+......    .....|+..|+|||++.+. .++.++|||||||++|
T Consensus       135 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~  192 (286)
T cd07832         135 ----------------------DGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFA  192 (286)
T ss_pred             ----------------------CCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHH
Confidence                                  456899999998754322    3445789999999998764 4689999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchh-hhhhhccCChh
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK-VLIEKYDFSEK  433 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  433 (530)
                      +|++|.+||.+..      +...+..+...++.+....+......          ..+....+..... ...   .....
T Consensus       193 ~l~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~~~  253 (286)
T cd07832         193 ELLNGSPLFPGEN------DIEQLAIVFRTLGTPNEETWPGLTSL----------PDYNKITFPESKPIPLE---EIFPD  253 (286)
T ss_pred             HHHcCCcCcCCCC------HHHHHHHHHHHcCCCChHHHhhccCc----------chhhcccCCCCCcchHH---HhCCC
Confidence            9999998886543      45666777777776655443221110          0000000000000 000   11123


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      .+..+.+||.+||..||.+|||++++|+||||.
T Consensus       254 ~~~~~~~li~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         254 ASPEALDLLKGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             ccHHHHHHHHHHhccChhhCCCHHHHhhCcCcC
Confidence            457899999999999999999999999999994

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=5.8e-41  Score=334.11  Aligned_cols=282  Identities=27%  Similarity=0.384  Sum_probs=212.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|.+.+.||+|+||.||+|.+..+++.||||++....  .....+.+|+.+++.+      .|+||+++++++.    
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~~~~~----   73 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGL------KHANIVLLHDIIH----   73 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhc------CCCCEeEEEEEEe----
Confidence            368999999999999999999999999999999886543  2234567899999999      7888999999988    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      .+...|+||||++++|.+.+.... ..+++..++.++.||+.||.|||++ ||+||||||+|||++.             
T Consensus        74 ~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dlkp~Nil~~~-------------  138 (291)
T cd07870          74 TKETLTFVFEYMHTDLAQYMIQHP-GGLHPYNVRLFMFQLLRGLAYIHGQ-HILHRDLKPQNLLISY-------------  138 (291)
T ss_pred             cCCeEEEEEecccCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChHHEEEcC-------------
Confidence            457899999999888888775432 3478889999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (291)
T cd07870         139 --------------------------------------------------------------------------------  138 (291)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~  354 (530)
                                             ++.++|+|||++.....   ......+++.|+|||++.+. .++.++|||||||++|
T Consensus       139 -----------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~  195 (291)
T cd07870         139 -----------------------LGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFI  195 (291)
T ss_pred             -----------------------CCcEEEeccccccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHH
Confidence                                   45699999999865322   22344678999999998764 4788999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|..||....     .....+..+...+|.++...+........+......      .............    ...
T Consensus       196 ~l~~g~~~f~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~  260 (291)
T cd07870         196 EMLQGQPAFPGVS-----DVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFL------PCKPQQLRVVWKR----LSR  260 (291)
T ss_pred             HHHhCCCCCCCch-----hHHHHHHHHHHHcCCCChhhhhhhhhcccccchhcc------ccCCcchhhhccc----cCC
Confidence            9999999996443     235667777777776655443222111111000000      0000000000000    012


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      +..+.+||.+||..||.+|||+.|+|.||||
T Consensus       261 ~~~~~~ll~~~l~~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         261 PPKAEDLASQMLMMFPKDRISAQDALLHPYF  291 (291)
T ss_pred             ChHHHHHHHHHhCcCcccCcCHHHHhcCCCC
Confidence            5678899999999999999999999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=1.8e-41  Score=344.45  Aligned_cols=256  Identities=20%  Similarity=0.324  Sum_probs=199.3

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.++||+|+||.||+|++..+++.||+|++.+..    .....+.+|+.++..+      .|++|++++++|.   
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~l~~~~~---   71 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNG------DCQWITTLHYAFQ---   71 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhC------CCCCEeeEEEEEE---
Confidence            47999999999999999999999999999999987532    2233466788888777      7888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ...+.||||||+ +++|.+++.... ..+++..++.++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~L~~lH~~-~iiHrDlkp~Nill~~-----------  137 (331)
T cd05624          72 -DENYLYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLAIHSIHQL-HYVHRDIKPDNVLLDM-----------  137 (331)
T ss_pred             -cCCEEEEEEeCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCchHHEEEcC-----------
Confidence             457999999999 999999987532 3589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (331)
T cd05624         138 --------------------------------------------------------------------------------  137 (331)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcC-----CCCCCcchhH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLG-----SKYSTPADLW  347 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~-----~~~~~~~DiW  347 (530)
                                               ++.++|+|||++......    .....||+.|+|||++.+     ..++.++|||
T Consensus       138 -------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Diw  192 (331)
T cd05624         138 -------------------------NGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWW  192 (331)
T ss_pred             -------------------------CCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEE
Confidence                                     456999999998654322    123469999999999875     4588999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|+.||...+      .......+.......                                     ..
T Consensus       193 SlGvil~ell~g~~Pf~~~~------~~~~~~~i~~~~~~~-------------------------------------~~  229 (331)
T cd05624         193 SLGVCMYEMLYGETPFYAES------LVETYGKIMNHEERF-------------------------------------QF  229 (331)
T ss_pred             eeehhhhhhhhCCCCccCCC------HHHHHHHHHcCCCcc-------------------------------------cC
Confidence            99999999999999996432      111111111000000                                     00


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCC--CcCHHHHhcCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEK--RPTAAQCLTHPWINVG  468 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~--Rpta~elL~hp~f~~~  468 (530)
                      .......+..+.+||.+||+.++.+  |++++++++||||...
T Consensus       230 p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~~  272 (331)
T cd05624         230 PSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGI  272 (331)
T ss_pred             CCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCCC
Confidence            0011234678999999999976654  5689999999999853

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=2.2e-41  Score=359.87  Aligned_cols=251  Identities=27%  Similarity=0.365  Sum_probs=203.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCC-CeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQT-SHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~-~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..|.+.+.||+|+||.||+|.+..+ +..||+|.+.... .....+.+|+.+|+.+      +|||||+++++|..    
T Consensus        67 ~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l------~Hpniv~~~~~~~~----  136 (478)
T PTZ00267         67 HMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAAC------DHFGIVKHFDDFKS----  136 (478)
T ss_pred             eeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhC------CCCCEeEEEEEEEE----
Confidence            4599999999999999999998887 7889999765433 2234567799999998      78899999999984    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      ...+||||||+ +++|.+++...  ....+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus       137 ~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~-~ivHrDlkp~NIll~~-----------  204 (478)
T PTZ00267        137 DDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR-KMMHRDLKSANIFLMP-----------  204 (478)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC-CEEECCcCHHhEEECC-----------
Confidence            47899999999 89999887543  233588999999999999999999997 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       205 --------------------------------------------------------------------------------  204 (478)
T PTZ00267        205 --------------------------------------------------------------------------------  204 (478)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                               .+.+||+|||++......     ....+||+.|+|||++.+..++.++|||||||
T Consensus       205 -------------------------~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~  259 (478)
T PTZ00267        205 -------------------------TGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGV  259 (478)
T ss_pred             -------------------------CCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHH
Confidence                                     457999999999754322     23456999999999999989999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHh-CCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELL-GMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      ++|+|++|..||...+         ....+..++ +..                                       ..+
T Consensus       260 ~l~el~tg~~Pf~~~~---------~~~~~~~~~~~~~---------------------------------------~~~  291 (478)
T PTZ00267        260 ILYELLTLHRPFKGPS---------QREIMQQVLYGKY---------------------------------------DPF  291 (478)
T ss_pred             HHHHHHhCCCCCCCCC---------HHHHHHHHHhCCC---------------------------------------CCC
Confidence            9999999999996432         111111111 000                                       012


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      +...+.++.+||.+||..||++||++.++|.|||++.
T Consensus       292 ~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~~~~~~~  328 (478)
T PTZ00267        292 PCPVSSGMKALLDPLLSKNPALRPTTQQLLHTEFLKY  328 (478)
T ss_pred             CccCCHHHHHHHHHHhccChhhCcCHHHHHhCHHHHH
Confidence            2345678999999999999999999999999999864

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=5.8e-41  Score=334.63  Aligned_cols=283  Identities=30%  Similarity=0.449  Sum_probs=218.3

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|++.+.||+|+||+||+|.+..+++.||||.+....   .....+.+|+++++++      .|+||+++++++.    
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----   71 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEM------QHGNIVRLQDVVH----   71 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhc------cCCCEeeEEEEEe----
Confidence            57999999999999999999999999999999876542   2235677899999999      7888999999998    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ...+.|+||||++++|.+.+.......+++..+..++.||+.||+|||++ ||+||||||+||+++..            
T Consensus        72 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i~H~dl~p~nill~~~------------  138 (294)
T PLN00009         72 SEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH-RVLHRDLKPQNLLIDRR------------  138 (294)
T ss_pred             cCCeEEEEEecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCcceEEEECC------------
Confidence            45799999999988998888654444468889999999999999999997 99999999999999541            


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (294)
T PLN00009        139 --------------------------------------------------------------------------------  138 (294)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                             ...+||+|||++.....   ......+++.|+|||++.+ ..++.++|||||||++|
T Consensus       139 -----------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~  195 (294)
T PLN00009        139 -----------------------TNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFA  195 (294)
T ss_pred             -----------------------CCEEEEcccccccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHH
Confidence                                   34589999999864322   2334567899999999876 45789999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||....      ..+.+..+...++.++...|........+......         +.....    .......
T Consensus       196 ~l~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~  256 (294)
T PLN00009        196 EMVNQKPLFPGDS------EIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPK---------WPPKDL----ATVVPTL  256 (294)
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHHHhCCCChhhccccccchhhhhhccc---------CCCCCH----HHhCcCC
Confidence            9999999996533      34556666777777666655432221111110000         000000    0112345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +..+.+||.+||+.||.+||++.++|.||||....
T Consensus       257 ~~~~~~~i~~~l~~~P~~Rps~~~~l~~~~~~~~~  291 (294)
T PLN00009        257 EPAGVDLLSKMLRLDPSKRITARAALEHEYFKDLG  291 (294)
T ss_pred             ChHHHHHHHHHccCChhhCcCHHHHhcCchHhHHh
Confidence            67899999999999999999999999999998643

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=2.2e-41  Score=335.57  Aligned_cols=257  Identities=26%  Similarity=0.391  Sum_probs=205.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC--C
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG--P  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~--~  118 (530)
                      .+.|++.+.||.|+||.||+|.+..+++.||+|++.........+..|+.+++++.     +|+||++++++|....  .
T Consensus        15 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~~~~~~~~~~   89 (282)
T cd06636          15 AGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYS-----HHRNIATYYGAFIKKSPPG   89 (282)
T ss_pred             hhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhc-----CCCcEEEEeeehhcccccC
Confidence            47899999999999999999999999999999998776555567788999998884     6899999999986432  1


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....+|+||||+ +++|.+++.......+++..+..++.||+.||.|||++ ||+||||||+||++..            
T Consensus        90 ~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-~ivH~dl~~~nili~~------------  156 (282)
T cd06636          90 HDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH-KVIHRDIKGQNVLLTE------------  156 (282)
T ss_pred             CCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEECC------------
Confidence            356899999999 77999998765555688999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (282)
T cd06636         157 --------------------------------------------------------------------------------  156 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhc-----CCCCCCcchhHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLL-----GSKYSTPADLWSF  349 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~-----~~~~~~~~DiWSl  349 (530)
                                              +..++|+|||++.....   ......|++.|+|||++.     ...++.++|||||
T Consensus       157 ------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~Dvwsl  212 (282)
T cd06636         157 ------------------------NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSL  212 (282)
T ss_pred             ------------------------CCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHH
Confidence                                    45689999999865432   233457899999999986     3458889999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|.+||....         ....+.......+.                                     ..
T Consensus       213 G~~l~el~~g~~p~~~~~---------~~~~~~~~~~~~~~-------------------------------------~~  246 (282)
T cd06636         213 GITAIEMAEGAPPLCDMH---------PMRALFLIPRNPPP-------------------------------------KL  246 (282)
T ss_pred             HHHHHHHHhCCCCccccC---------HHhhhhhHhhCCCC-------------------------------------CC
Confidence            999999999999995322         11111111000000                                     00


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .....+.++.+||.+||..||.+||++.|+|.||||
T Consensus       247 ~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~~~~  282 (282)
T cd06636         247 KSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI  282 (282)
T ss_pred             cccccCHHHHHHHHHHhCCChhhCcCHHHHhcCCCC
Confidence            112346789999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=2.3e-41  Score=344.59  Aligned_cols=252  Identities=23%  Similarity=0.358  Sum_probs=195.5

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEe-----CCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWD-----TQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~-----~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..++|++.++||+|+||.||+|.+     ..+++.||+|+++...  .....+.+|+.+|.++.     +||||+++++
T Consensus         4 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~niv~~~~   78 (338)
T cd05102           4 FPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIG-----NHLNVVNLLG   78 (338)
T ss_pred             cchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhc-----cCcceeeEEe
Confidence            3457899999999999999999975     2346789999987542  23456788999999985     6889999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhc------------------------------------------------
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD------------------------------------------------  142 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~------------------------------------------------  142 (530)
                      ++...   +..+++||||+ +++|.+++....                                                
T Consensus        79 ~~~~~---~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (338)
T cd05102          79 ACTKP---NGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSG  155 (338)
T ss_pred             EecCC---CCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCc
Confidence            88743   35789999999 899999886432                                                


Q ss_pred             ------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccccccccc
Q 045988          143 ------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLV  210 (530)
Q Consensus       143 ------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (530)
                                  ...+++..+..++.||+.||+|||++ ||+||||||+|||++.                         
T Consensus       156 ~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDiKp~Nil~~~-------------------------  209 (338)
T cd05102         156 STNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASR-KCIHRDLAARNILLSE-------------------------  209 (338)
T ss_pred             ccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHC-CEECCCCccceEEEcC-------------------------
Confidence                        12377888999999999999999997 9999999999999955                         


Q ss_pred             CCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCC
Q 045988          211 LDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPS  290 (530)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (530)
                                                                                                      
T Consensus       210 --------------------------------------------------------------------------------  209 (338)
T cd05102         210 --------------------------------------------------------------------------------  209 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCC
Q 045988          291 RSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFD  364 (530)
Q Consensus       291 ~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~  364 (530)
                                 +..++|+|||++......     .....+++.|+|||++.+..|+.++|||||||++|+|++ |..||.
T Consensus       210 -----------~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~  278 (338)
T cd05102         210 -----------NNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYP  278 (338)
T ss_pred             -----------CCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCC
Confidence                       456999999999653221     123345678999999999899999999999999999997 999996


Q ss_pred             CCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhh
Q 045988          365 PHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVP  444 (530)
Q Consensus       365 ~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~  444 (530)
                      +...     .......+.  -+.                                       ....+...++.+.+||.+
T Consensus       279 ~~~~-----~~~~~~~~~--~~~---------------------------------------~~~~~~~~~~~l~~li~~  312 (338)
T cd05102         279 GVQI-----NEEFCQRLK--DGT---------------------------------------RMRAPENATPEIYRIMLA  312 (338)
T ss_pred             CCCc-----cHHHHHHHh--cCC---------------------------------------CCCCCCCCCHHHHHHHHH
Confidence            5321     111111100  000                                       011223456789999999


Q ss_pred             ccCcCCCCCcCHHHHhc
Q 045988          445 ILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       445 mL~~dP~~Rpta~elL~  461 (530)
                      ||+.||.+|||+.|+++
T Consensus       313 cl~~dp~~RPs~~el~~  329 (338)
T cd05102         313 CWQGDPKERPTFSALVE  329 (338)
T ss_pred             HccCChhhCcCHHHHHH
Confidence            99999999999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=4.1e-41  Score=335.19  Aligned_cols=251  Identities=26%  Similarity=0.412  Sum_probs=209.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....    .....+.+|+++++++      +||||+++++++.   
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~---   71 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSI------RHPFLVNLYGSFQ---   71 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCccceeeEEE---
Confidence            47999999999999999999999999999999887532    2345678899999999      7889999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .+...|+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||+|.|||++.           
T Consensus        72 -~~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qil~~l~~lH~~-~i~H~dl~p~nili~~-----------  136 (290)
T cd05580          72 -DDSNLYLVMEYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLHSL-DIVYRDLKPENLLLDS-----------  136 (290)
T ss_pred             -cCCeEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHEEECC-----------
Confidence             457899999999 99999998754  4589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (290)
T cd05580         137 --------------------------------------------------------------------------------  136 (290)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                               ++.++|+|||++...........|++.|+|||.+.+..++.++|||||||++|+|
T Consensus       137 -------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  191 (290)
T cd05580         137 -------------------------DGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEM  191 (290)
T ss_pred             -------------------------CCCEEEeeCCCccccCCCCCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHH
Confidence                                     4569999999997655555556789999999999888899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||....      .......+.                                          .....++...+.
T Consensus       192 ~~g~~p~~~~~------~~~~~~~~~------------------------------------------~~~~~~~~~~~~  223 (290)
T cd05580         192 LAGYPPFFDDN------PIQIYEKIL------------------------------------------EGKVRFPSFFSP  223 (290)
T ss_pred             HhCCCCCCCCC------HHHHHHHHh------------------------------------------cCCccCCccCCH
Confidence            99999996432      111111111                                          111123344567


Q ss_pred             HHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRP-----TAAQCLTHPWINVGP  469 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~~  469 (530)
                      .+.+||.+||..||.+|+     +++|+++||||..-.
T Consensus       224 ~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~  261 (290)
T cd05580         224 DAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGID  261 (290)
T ss_pred             HHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccCC
Confidence            899999999999999999     999999999998654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=3.8e-41  Score=342.47  Aligned_cols=287  Identities=27%  Similarity=0.438  Sum_probs=223.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++....   .....+.+|+.+|+++      .||||++++++|....
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~~   77 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHF------KHDNIIAIRDILRPPG   77 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhc------CCCCccCHHHhccccC
Confidence            368999999999999999999999999999999887542   2345667899999999      6888999999988655


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .....+|+||||++++|..++..  ...+++..+..++.||+.||.|||++ ||+||||||+|||++.            
T Consensus        78 ~~~~~~~lv~e~~~~~l~~~~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~Nil~~~------------  142 (334)
T cd07855          78 ADFKDVYVVMDLMESDLHHIIHS--DQPLTEEHIRYFLYQLLRGLKYIHSA-NVIHRDLKPSNLLVNE------------  142 (334)
T ss_pred             CCCceEEEEEehhhhhHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEcC------------
Confidence            45678999999998899888863  34489999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (334)
T cd07855         143 --------------------------------------------------------------------------------  142 (334)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcC-CCCCCcchhHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLG-SKYSTPADLWSF  349 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSl  349 (530)
                                              ++.++|+|||++......       ....+|+..|+|||++.+ ..++.++|||||
T Consensus       143 ------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~sl  198 (334)
T cd07855         143 ------------------------DCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSV  198 (334)
T ss_pred             ------------------------CCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHH
Confidence                                    467999999998643211       124478999999999876 458999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--cccccccCccccchhcccCCchhhhhhh
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||++|+|++|++||.+..      ....+..+...+|.++..+.......  ..++.....           ......  
T Consensus       199 G~~l~el~~g~~pf~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--  259 (334)
T cd07855         199 GCIFAEMLGRRQLFPGKN------YVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPR-----------KQPVPW--  259 (334)
T ss_pred             HHHHHHHHcCCCccCCCC------hHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhccc-----------CCCCCH--
Confidence            999999999999996543      45677788888888877654322110  000000000           000000  


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      ..+....+.++.+||.+||+.||.+||++.++|.||||...+..
T Consensus       260 ~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~~  303 (334)
T cd07855         260 SKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHDP  303 (334)
T ss_pred             HHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccCC
Confidence            00112347889999999999999999999999999999866543

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=9.5e-41  Score=333.03  Aligned_cols=284  Identities=31%  Similarity=0.506  Sum_probs=212.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|++.+.||+|+||.||+|.+..+++.||||++....   .....+.+|+.+++.+.     +|+||+++++++.....
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~-----~~~~i~~~~~~~~~~~~   75 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLS-----ESIYIVRLLDVEHVEEK   75 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHcc-----CCCCccceeeeEeecCC
Confidence            47999999999999999999999999999999876542   22356788999999985     56899999999875432


Q ss_pred             -CCcEEEEEEeccCcCHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          119 -NGQHVCMVFEYLGENLLTLIKYADY---RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       119 -~~~~~~lVmE~~~~~L~~~i~~~~~---~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                       .....|+||||+.++|.+++.....   ..+++..++.++.||+.||.|||++ ||+||||||+|||++..        
T Consensus        76 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~-~i~H~dl~~~nil~~~~--------  146 (295)
T cd07837          76 NGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH-GVMHRDLKPQNLLVDKQ--------  146 (295)
T ss_pred             CCCceEEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCChHHEEEecC--------
Confidence             2234899999997799998865432   3489999999999999999999997 99999999999999541        


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (295)
T cd07837         147 --------------------------------------------------------------------------------  146 (295)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcC-CCCCCcchhHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFA  350 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG  350 (530)
                                                 ...++|+|||.+.....   ......+++.|+|||++.+ ..++.++||||||
T Consensus       147 ---------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG  199 (295)
T cd07837         147 ---------------------------KGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVG  199 (295)
T ss_pred             ---------------------------CCeEEEeecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHH
Confidence                                       34689999999864322   2233467889999999865 4579999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+.+      ....+..+...++.++...+........+.          ....+.....    ...
T Consensus       200 ~~l~~l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~----~~~  259 (295)
T cd07837         200 CIFAEMSRKQPLFPGDS------ELQQLLHIFKLLGTPTEQVWPGVSKLRDWH----------EFPQWKPQDL----SRA  259 (295)
T ss_pred             HHHHHHHcCCCCCCCCC------HHHHHHHHHHHhCCCChhhCcchhhccchh----------hcCcccchhH----HHh
Confidence            99999999999997543      445555666666655544332111100000          0000000000    011


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      ....+..+.+||.+||.+||.+||++.|+|.||||+
T Consensus       260 ~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         260 VPDLSPEGLDLLQKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             ccccCHHHHHHHHHHccCChhhcCCHHHHhcCCCcC
Confidence            123567899999999999999999999999999995

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=8.1e-41  Score=336.75  Aligned_cols=297  Identities=27%  Similarity=0.429  Sum_probs=216.6

Q ss_pred             CEEEEEEeccccceEEEEEEeCC--CCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQ--TSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~--~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      +|.+.++||+|+||.||+|.+..  +++.||||++....    .......+|+.+++++      +||||+++++++...
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~   74 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLREL------KHENVVSLVEVFLEH   74 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhc------CCCCccceEEEEeCC
Confidence            58999999999999999999988  89999999887632    3346678899999998      788899999999854


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYADY---RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~~~---~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                        ....+|+||||++++|.+++.....   ..+++..++.++.||+.||+|||++ ||+||||||+|||++...+     
T Consensus        75 --~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~h~dlkp~Nil~~~~~~-----  146 (316)
T cd07842          75 --ADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN-WVLHRDLKPANILVMGEGP-----  146 (316)
T ss_pred             --CCceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC-CEeeCCCCHHHEEEcCCCC-----
Confidence              3478999999998889888764432   2589999999999999999999997 9999999999999954110     


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (316)
T cd07842         147 --------------------------------------------------------------------------------  146 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCC-CCCCcchh
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGS-KYSTPADL  346 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~-~~~~~~Di  346 (530)
                                                 ..+.+||+|||++......      .....+++.|+|||++.+. .++.++||
T Consensus       147 ---------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv  199 (316)
T cd07842         147 ---------------------------ERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDI  199 (316)
T ss_pred             ---------------------------ccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHH
Confidence                                       0457999999998754322      2234678999999998764 58999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCC---CCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDN---YDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~---~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      |||||++|+|++|.+||.+.....   .......+..++..++..+...+........+... ..   .......+. ..
T Consensus       200 ~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~-~~  274 (316)
T cd07842         200 WAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTL-MK---DFKTKTYPS-NS  274 (316)
T ss_pred             HHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhh-hh---hccCCCCCC-cc
Confidence            999999999999999997654322   11123456666777776655433211111111000 00   000000000 00


Q ss_pred             hhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       424 ~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      +..........+..+.+||.+||.+||.+|||+.|++.||||
T Consensus       275 ~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         275 LAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence            011111112456789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=1.6e-41  Score=344.19  Aligned_cols=286  Identities=20%  Similarity=0.239  Sum_probs=198.6

Q ss_pred             EEEEeccc--cceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           46 VQSKLGWG--HFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        46 i~~~LG~G--~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ++++||+|  +|++||++.++.+|+.||||.+....   .....+.+|+.+++.+      +||||++++++|..    +
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l------~hpniv~~~~~~~~----~   71 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLF------NHPNIVPYRATFIA----D   71 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhc------CCCCeeeEEEEEEE----C
Confidence            56789999  78999999999999999999987542   2345567799999988      78899999999984    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...|+||||+ +++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||++.              
T Consensus        72 ~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~iiH~dlkp~Nil~~~--------------  136 (327)
T cd08227          72 NELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM-GYVHRSVKASHILISV--------------  136 (327)
T ss_pred             CEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCChhhEEEec--------------
Confidence            7899999999 88999998765555689999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (327)
T cd08227         137 --------------------------------------------------------------------------------  136 (327)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----------ccCCCCCCCCccCChhhcC--CCCCCcchhH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----------QFTNDIQTRQYRCPEVLLG--SKYSTPADLW  347 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----------~~~~~~gt~~y~aPE~l~~--~~~~~~~DiW  347 (530)
                                            +..++++||+.+.....          ......++..|+|||++.+  ..|+.++|||
T Consensus       137 ----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diw  194 (327)
T cd08227         137 ----------------------DGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIY  194 (327)
T ss_pred             ----------------------CCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHH
Confidence                                  34567777765432110          0122356778999999976  4589999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCC--------CcccccccccCccccchhcccCC
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGG--------RYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      ||||++|+|++|..||.....      ..  ..+....+..+.......        ......++  .............
T Consensus       195 slG~il~el~~g~~pf~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  264 (327)
T cd08227         195 SVGITACELANGHVPFKDMPA------TQ--MLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGAN--SGLGESTTVSTPR  264 (327)
T ss_pred             HHHHHHHHHHHCCCCCCCcch------hH--HHHHHhcCCccccccccchhhhhcccCCcccCCc--CCCCcccccCCcC
Confidence            999999999999999964321      11  111112222221100000        00000000  0000000000000


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ...............++.+.+||.+||++||.+|||++|+|+||||+..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f~~~  313 (327)
T cd08227         265 PSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQI  313 (327)
T ss_pred             ccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChhhhhc
Confidence            0000000111233456789999999999999999999999999999853

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-41  Score=338.49  Aligned_cols=255  Identities=24%  Similarity=0.360  Sum_probs=204.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+|++.+.||+|+||+||+|.+..+++.||||.+.....    ....+.+|+++++.+      .|+||+++++.+.   
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~---   71 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATL------DHPFLPTLYASFQ---   71 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhC------CCCCchhheeeee---
Confidence            379999999999999999999999999999998876432    345677899999998      6888999999987   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .+...|+||||+ +++|.+++.......+++..+..++.||+.||+|||+. ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nili~~-----------  138 (316)
T cd05574          72 -TETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLL-GIVYRDLKPENILLHE-----------  138 (316)
T ss_pred             -cCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHC-CeeccCCChHHeEEcC-----------
Confidence             457899999999 88999998755445699999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (316)
T cd05574         139 --------------------------------------------------------------------------------  138 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--------------------------------ccCCCC
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--------------------------------QFTNDI  324 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--------------------------------~~~~~~  324 (530)
                                               ++.++|+|||++.....                                .....+
T Consensus       139 -------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (316)
T cd05574         139 -------------------------SGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFV  193 (316)
T ss_pred             -------------------------CCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCc
Confidence                                     34688888887753211                                012346


Q ss_pred             CCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccc
Q 045988          325 QTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN  404 (530)
Q Consensus       325 gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  404 (530)
                      ||..|+|||++.+..++.++|||||||++|+|++|..||....      ....+.   .+....+               
T Consensus       194 g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~------~~~~~~---~~~~~~~---------------  249 (316)
T cd05574         194 GTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSN------RDETFS---NILKKEV---------------  249 (316)
T ss_pred             CccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCc------hHHHHH---HHhcCCc---------------
Confidence            8899999999999889999999999999999999999996433      111111   1110000               


Q ss_pred             ccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcC----HHHHhcCCCCCCCC
Q 045988          405 RHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPT----AAQCLTHPWINVGP  469 (530)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpt----a~elL~hp~f~~~~  469 (530)
                                            .+......+..+.+||.+||+.||++|||    ++|+|+||||+...
T Consensus       250 ----------------------~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~  296 (316)
T cd05574         250 ----------------------TFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVN  296 (316)
T ss_pred             ----------------------cCCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcCC
Confidence                                  00011124678999999999999999999    99999999998754

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=6.7e-41  Score=331.80  Aligned_cols=254  Identities=24%  Similarity=0.369  Sum_probs=199.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|+++++||+|+||.||+|.+..+++.||||++....  .....+.+|+++++++      +||||+++++.+..    
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~----   70 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKC------DSPYIIGFYGAFFV----   70 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhC------CCCCeeeEEEEEEE----
Confidence            36889999999999999999999999999999886542  2345678899999998      78889999999984    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....++||||+ +++|..+      ..+++..+..++.||+.||+|||++ ||+|+||||+|||++.             
T Consensus        71 ~~~~~lv~e~~~~~~l~~~------~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nill~~-------------  130 (279)
T cd06619          71 ENRISICTEFMDGGSLDVY------RKIPEHVLGRIAVAVVKGLTYLWSL-KILHRDVKPSNMLVNT-------------  130 (279)
T ss_pred             CCEEEEEEecCCCCChHHh------hcCCHHHHHHHHHHHHHHHHHHHHC-CEeeCCCCHHHEEECC-------------
Confidence            47899999999 6666433      2378899999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (279)
T cd06619         131 --------------------------------------------------------------------------------  130 (279)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                             ++.++|+|||++..... .....+||..|+|||++.+..++.++|||||||++|+|+
T Consensus       131 -----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~  187 (279)
T cd06619         131 -----------------------RGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELA  187 (279)
T ss_pred             -----------------------CCCEEEeeCCcceecccccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHH
Confidence                                   45699999999865432 234567899999999999888999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhC-CCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLG-MMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      +|..||............  . ....... ..+.                                     .......++
T Consensus       188 ~g~~pf~~~~~~~~~~~~--~-~~~~~~~~~~~~-------------------------------------~~~~~~~~~  227 (279)
T cd06619         188 LGRFPYPQIQKNQGSLMP--L-QLLQCIVDEDPP-------------------------------------VLPVGQFSE  227 (279)
T ss_pred             hCCCCchhhcccccccch--H-HHHHHHhccCCC-------------------------------------CCCCCcCCH
Confidence            999999643211110000  0 0000000 0000                                     000123457


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ++.+||.+||+.||.+||++.|++.||||...
T Consensus       228 ~~~~li~~~l~~~P~~Rp~~~eil~~~~~~~~  259 (279)
T cd06619         228 KFVHFITQCMRKQPKERPAPENLMDHPFIVQY  259 (279)
T ss_pred             HHHHHHHHHhhCChhhCCCHHHHhcCcccccc
Confidence            88999999999999999999999999999754

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-42  Score=337.81  Aligned_cols=261  Identities=26%  Similarity=0.372  Sum_probs=219.1

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .+..+.|...++||+|+||.||-|+.+.||+.||+|.+.+..    ......++|-.||.++      +.+.||.+-..|
T Consensus       181 pvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV------~s~FiVslaYAf  254 (591)
T KOG0986|consen  181 PVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKV------SSPFIVSLAYAF  254 (591)
T ss_pred             hccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHh------ccCcEEEEeeee
Confidence            344578999999999999999999999999999999765432    2345578899999999      667899999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      +    +.+.+|+||..| ||+|.-.|.+....++++..+++++.+|+.||++||+. +||.||+||+||||++       
T Consensus       255 e----Tkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~-~iVYRDLKPeNILLDd-------  322 (591)
T KOG0986|consen  255 E----TKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRR-RIVYRDLKPENILLDD-------  322 (591)
T ss_pred             c----CCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhc-ceeeccCChhheeecc-------
Confidence            8    568999999999 99998888777777899999999999999999999997 9999999999999977       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       323 --------------------------------------------------------------------------------  322 (591)
T KOG0986|consen  323 --------------------------------------------------------------------------------  322 (591)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                   .+.++|+|+|+|+...  +..+..+||.+|||||++.+..|+..+|+||||
T Consensus       323 -----------------------------~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lG  373 (591)
T KOG0986|consen  323 -----------------------------HGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLG  373 (591)
T ss_pred             -----------------------------CCCeEeeccceEEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHH
Confidence                                         6789999999998643  456777999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |+||+|+.|..||......      ..-..+-                                      ..++.....+
T Consensus       374 CllYemi~G~sPFr~~KeK------vk~eEvd--------------------------------------rr~~~~~~ey  409 (591)
T KOG0986|consen  374 CLLYEMIAGHSPFRQRKEK------VKREEVD--------------------------------------RRTLEDPEEY  409 (591)
T ss_pred             hHHHHHHcccCchhhhhhh------hhHHHHH--------------------------------------HHHhcchhhc
Confidence            9999999999999533210      1111111                                      1223334456


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVGP  469 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~~  469 (530)
                      +...++++++|++.+|+.||.+|..     ++++.+||||+.-.
T Consensus       410 ~~kFS~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~ln  453 (591)
T KOG0986|consen  410 SDKFSEEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDLN  453 (591)
T ss_pred             ccccCHHHHHHHHHHHccCHHHhccCCCcCcchhhhCcccccCC
Confidence            6778999999999999999999975     78999999998743

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-40  Score=339.37  Aligned_cols=285  Identities=29%  Similarity=0.449  Sum_probs=216.1

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC-
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG-  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~-  117 (530)
                      .++|++.++||+|+||.||+|.+..+|+.||||++...  ......+.+|+.+++++      .|+||+++++++.... 
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~~~   77 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRF------KHENIIGILDIIRPPSF   77 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhC------CCCCcCchhheeecccc
Confidence            46899999999999999999999999999999988643  22345677899999999      6888999999876432 


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .....+|+||||++++|..++..   ..+++..++.++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        78 ~~~~~~~lv~e~~~~~l~~~~~~---~~l~~~~~~~i~~ql~~aL~~LH~~-~ivH~dlkp~Nill~~------------  141 (336)
T cd07849          78 ESFNDVYIVQELMETDLYKLIKT---QHLSNDHIQYFLYQILRGLKYIHSA-NVLHRDLKPSNLLLNT------------  141 (336)
T ss_pred             cccceEEEEehhcccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEECC------------
Confidence            12356899999998898887753   3489999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (336)
T cd07849         142 --------------------------------------------------------------------------------  141 (336)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcC-CCCCCcchhHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLG-SKYSTPADLWSFA  350 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG  350 (530)
                                              .+.++|+|||++......      .....||+.|+|||++.+ ..++.++||||||
T Consensus       142 ------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG  197 (336)
T cd07849         142 ------------------------NCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVG  197 (336)
T ss_pred             ------------------------CCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHH
Confidence                                    456999999998653221      233578999999998765 4689999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--cccccccCccccchhcccCCchhhhhhhc
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |++|+|++|++||.+..      ....+..+...++.++.+.+......  ..++..         ....+  ....  .
T Consensus       198 vil~el~~G~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~--~  258 (336)
T cd07849         198 CILAEMLSNRPLFPGKD------YLHQLNLILGVLGTPSQEDLNCIISLRARNYIKS---------LPFKP--KVPW--N  258 (336)
T ss_pred             HHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhh---------cCcCC--cccH--H
Confidence            99999999999996432      45567777777776655433211100  000000         00000  0000  0


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ......++.+.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       259 ~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~  300 (336)
T cd07849         259 KLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHD  300 (336)
T ss_pred             HHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCC
Confidence            011234678999999999999999999999999999987654

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.1e-40  Score=339.41  Aligned_cols=291  Identities=30%  Similarity=0.431  Sum_probs=219.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|.+.+.||+|+||+||+|++..+++.||||.+...   ......+.+|+.+++.+      +|+||+++++++....
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~ni~~~~~~~~~~~   77 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHL------DHENVIAIKDIMPPPH   77 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhc------CCCCccchHHheeccc
Confidence            46899999999999999999999999999999987643   22344567899999998      7888999999887532


Q ss_pred             -CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 -PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 -~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ......|+||||++++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++.           
T Consensus        78 ~~~~~~~~lv~e~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-~i~H~dlkp~Nil~~~-----------  143 (337)
T cd07858          78 REAFNDVYIVYELMDTDLHQIIRSS--QTLSDDHCQYFLYQLLRGLKYIHSA-NVLHRDLKPSNLLLNA-----------  143 (337)
T ss_pred             ccccCcEEEEEeCCCCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEcC-----------
Confidence             122468999999998999888643  4599999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (337)
T cd07858         144 --------------------------------------------------------------------------------  143 (337)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcC-CCCCCcchhHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACI  352 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~i  352 (530)
                                               +..++|+|||++......   .....++..|+|||++.+ ..++.++|||||||+
T Consensus       144 -------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~i  198 (337)
T cd07858         144 -------------------------NCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCI  198 (337)
T ss_pred             -------------------------CCCEEECcCccccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHH
Confidence                                     456999999999754322   234568899999999875 458999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|.+||.+..      .......+...+|..+...+......       ............+....    .....
T Consensus       199 l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~----~~~~~  261 (337)
T cd07858         199 FAELLGRKPLFPGKD------YVHQLKLITELLGSPSEEDLGFIRNE-------KARRYIRSLPYTPRQSF----ARLFP  261 (337)
T ss_pred             HHHHHcCCCCCCCCC------hHHHHHHHHHHhCCCChHHhhhcCch-------hhhHHHHhcCcccccCH----HHHcc
Confidence            999999999996532      45566777777777665443110000       00000000000000000    01123


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE  473 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~  473 (530)
                      ..++.+.+||++||++||.+|||+.|+|+||||........
T Consensus       262 ~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~~~  302 (337)
T cd07858         262 HANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDPSD  302 (337)
T ss_pred             cCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCccc
Confidence            46788999999999999999999999999999987554433

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-42  Score=343.05  Aligned_cols=253  Identities=30%  Similarity=0.409  Sum_probs=213.9

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      -+.||+|.||+||-|.++.+|+.||||++.+..   .....+.+|+.||..+      .||.||.+--.|+    +.+.+
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l------~HPGiV~le~M~E----T~erv  638 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNL------HHPGIVNLECMFE----TPERV  638 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhc------CCCCeeEEEEeec----CCceE
Confidence            488999999999999999999999999988643   3356788999999999      8899999999998    55899


Q ss_pred             EEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccc
Q 045988          124 CMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLL  203 (530)
Q Consensus       124 ~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~  203 (530)
                      ++|||.+.|+.++.|-....+.+++...++++.||+.||.|||-+ ||||+||||+|||+.+...               
T Consensus       639 FVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~k-nIvHCDLKPENVLLas~~~---------------  702 (888)
T KOG4236|consen  639 FVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFK-NIVHCDLKPENVLLASASP---------------  702 (888)
T ss_pred             EEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc-ceeeccCCchheeeccCCC---------------
Confidence            999999999999988777777899999999999999999999997 9999999999999955210               


Q ss_pred             cccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccccc
Q 045988          204 TKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGIN  283 (530)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (530)
                                                                                                      
T Consensus       703 --------------------------------------------------------------------------------  702 (888)
T KOG4236|consen  703 --------------------------------------------------------------------------------  702 (888)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCC
Q 045988          284 KDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDV  361 (530)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~  361 (530)
                                        -.++||||||+|+...+.  ..+.+|||.|.|||++..+.|+...|+||+|||+|.-++|.+
T Consensus       703 ------------------FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTF  764 (888)
T KOG4236|consen  703 ------------------FPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTF  764 (888)
T ss_pred             ------------------CCceeeccccceeecchhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccc
Confidence                              246999999999987644  467799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHH
Q 045988          362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADF  441 (530)
Q Consensus       362 PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL  441 (530)
                      ||..        +++.-.+|++.-=+.|                                      ...+.++++.+.||
T Consensus       765 PFNE--------dEdIndQIQNAaFMyP--------------------------------------p~PW~eis~~Aidl  798 (888)
T KOG4236|consen  765 PFNE--------DEDINDQIQNAAFMYP--------------------------------------PNPWSEISPEAIDL  798 (888)
T ss_pred             cCCC--------ccchhHHhhccccccC--------------------------------------CCchhhcCHHHHHH
Confidence            9953        2223333332211111                                      12234678899999


Q ss_pred             HhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          442 LVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       442 l~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      |..+|+..=.+|.|.+..|.|||++...
T Consensus       799 In~LLqVkm~kRysvdk~lsh~Wlq~yq  826 (888)
T KOG4236|consen  799 INNLLQVKMRKRYSVDKSLSHPWLQDYQ  826 (888)
T ss_pred             HHHHHHHHHHHhcchHhhccchhhhcch
Confidence            9999999999999999999999998654

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=1.2e-40  Score=325.24  Aligned_cols=250  Identities=24%  Similarity=0.382  Sum_probs=202.1

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++.+.||+|+||.||+|.+..+++.||+|.+....   .....+.+|+++++++      .|+||+++++.+..   .
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~---~   71 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQL------KHPNIVAYRESWEG---E   71 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhC------CCCCeeeeeeeecC---C
Confidence            5999999999999999999999999999999876532   2344577899999988      67889999988763   2


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ...+|+||||+ +++|.+.+.......+++.++..++.||+.||++||++ ||+||||||+||+++.             
T Consensus        72 ~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~-~i~H~di~p~nil~~~-------------  137 (257)
T cd08223          72 DGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK-HILHRDLKTQNVFLTR-------------  137 (257)
T ss_pred             CCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCchhEEEec-------------
Confidence            35789999999 78999988765555689999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (257)
T cd08223         138 --------------------------------------------------------------------------------  137 (257)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             ...++|+|||.+.....   ......+++.|+|||++.+..++.++|||||||++|+
T Consensus       138 -----------------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~  194 (257)
T cd08223         138 -----------------------TNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYE  194 (257)
T ss_pred             -----------------------CCcEEEecccceEEecccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHH
Confidence                                   45799999999865422   2234568899999999999889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....      .......+..  +..                                       ...+...+
T Consensus       195 l~~g~~~~~~~~------~~~~~~~~~~--~~~---------------------------------------~~~~~~~~  227 (257)
T cd08223         195 MATLKHAFNAKD------MNSLVYRIIE--GKL---------------------------------------PPMPKDYS  227 (257)
T ss_pred             HHcCCCCCCCCC------HHHHHHHHHh--cCC---------------------------------------CCCccccC
Confidence            999999996322      1111111100  000                                       01223456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      +.+.+||.+||..||.+||++.++++||||
T Consensus       228 ~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         228 PELGELIATMLSKRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             HHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            789999999999999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-40  Score=328.76  Aligned_cols=280  Identities=31%  Similarity=0.497  Sum_probs=215.7

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|++.++||+|+||.||+|.+..+++.||+|+++..   ......+.+|+++++++      .|+||+++++++..   
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~---   71 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQL------RHENIVNLKEAFRR---   71 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhc------CCCCeeehhheEEE---
Confidence            4799999999999999999999999999999987653   23346788999999999      68889999999984   


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                       +...++||||+++++...+... ...+++..+..++.||+.||+|||++ ||+||||||+||+++.             
T Consensus        72 -~~~~~iv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~~~ni~~~~-------------  135 (288)
T cd07833          72 -KGRLYLVFEYVERTLLELLEAS-PGGLPPDAVRSYIWQLLQAIAYCHSH-NIIHRDIKPENILVSE-------------  135 (288)
T ss_pred             -CCEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEECC-------------
Confidence             4789999999966666554432 34489999999999999999999997 9999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (288)
T cd07833         136 --------------------------------------------------------------------------------  135 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACIC  353 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il  353 (530)
                                             ++.++|+|||.+.....    ......++..|+|||++.+. .++.++|||||||++
T Consensus       136 -----------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l  192 (288)
T cd07833         136 -----------------------SGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIM  192 (288)
T ss_pred             -----------------------CCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHH
Confidence                                   46799999999865432    23446788999999999888 789999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||.+.+      ..+.+..+...++..+..........       ......   ..............++..
T Consensus       193 ~~l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~  256 (288)
T cd07833         193 AELLDGEPLFPGDS------DIDQLYLIQKCLGPLPPSHQELFSSN-------PRFAGV---AFPEPSQPESLERRYPGK  256 (288)
T ss_pred             HHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHhhhcccC-------cccccc---ccCCCCCcHHHHHhcCCc
Confidence            99999999997543      45566667777776665433221110       000000   000000000001122334


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+..+.+||++||..||.+|||++++++||||
T Consensus       257 ~~~~~~~li~~~l~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         257 VSSPALDFLKACLRMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             cchHHHHHHHHHhccCchhcccHHHHhcCCCC
Confidence            57889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=2.6e-40  Score=328.14  Aligned_cols=278  Identities=31%  Similarity=0.497  Sum_probs=205.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....   .....+.+|+.+++++      .|+||+++++++.    
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~----   70 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQL------KHPNLVNLIEVFR----   70 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhC------CCCCEeeeeeEEe----
Confidence            47999999999999999999999999999999876432   2234567899999998      7888999999998    


Q ss_pred             CCcEEEEEEeccCc-CHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~~~-~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .....++||||+.+ .|..++.  ....+++..++.++.||+.||+|||+. ||+||||||+||+++.            
T Consensus        71 ~~~~~~~v~e~~~~~~l~~~~~--~~~~~~~~~~~~~~~ql~~~l~~LH~~-~i~H~dl~p~nil~~~------------  135 (286)
T cd07847          71 RKRKLHLVFEYCDHTVLNELEK--NPRGVPEHLIKKIIWQTLQAVNFCHKH-NCIHRDVKPENILITK------------  135 (286)
T ss_pred             eCCEEEEEEeccCccHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCChhhEEEcC------------
Confidence            44789999999944 4444443  223489999999999999999999996 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (286)
T cd07847         136 --------------------------------------------------------------------------------  135 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il  353 (530)
                                              ++.++|+|||++......   .....++..|+|||++.+ ..++.++|||||||++
T Consensus       136 ------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~  191 (286)
T cd07847         136 ------------------------QGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVF  191 (286)
T ss_pred             ------------------------CCcEEECccccceecCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHH
Confidence                                    456999999999754322   234567889999999876 4588999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||.+..      ..+.+..+...++.......... ....++....      ..........    ......
T Consensus       192 ~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~----~~~~~~  254 (286)
T cd07847         192 AELLTGQPLWPGKS------DVDQLYLIRKTLGDLIPRHQQIF-STNQFFKGLS------IPEPETREPL----ESKFPN  254 (286)
T ss_pred             HHHHhCCCCCCCCC------hHHHHHHHHHHhCCCChHHhhhc-cccccccccc------CCCcccccCH----HHHhcc
Confidence            99999999997543      34455555555554433211000 0000000000      0000000000    001123


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+..+.+||.+||+.||++||++.|+|.||||
T Consensus       255 ~~~~~~~li~~~l~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         255 ISSPALSFLKGCLQMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             CCHHHHHHHHHHhcCCccccCCHHHHhcCCCC
Confidence            46789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=2.6e-40  Score=327.86  Aligned_cols=277  Identities=29%  Similarity=0.471  Sum_probs=212.5

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      +|++.++||.|++|.||+|++..+|+.||||+++...  .....+.+|+.+++++      .|+||+++++.+..    .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~----~   70 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKEL------KHENIVRLHDVIHT----E   70 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhh------cCCCEeeeeeeEee----C
Confidence            5899999999999999999999999999999887543  2345677899999999      68889999999984    4


Q ss_pred             cEEEEEEeccCcCHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADY-RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~-~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...+|||||+.++|.+++..... ..+++..+..++.||+.||+|||++ ||+||||||+||+++.              
T Consensus        71 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~h~dl~p~ni~~~~--------------  135 (284)
T cd07836          71 NKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN-RVLHRDLKPQNLLINK--------------  135 (284)
T ss_pred             CcEEEEEecCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEECC--------------
Confidence            68999999998899998865432 3489999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (284)
T cd07836         136 --------------------------------------------------------------------------------  135 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~e  355 (530)
                                            ++.++|+|||.+.....   ......++..|+|||++.+. .++.++|||||||++|+
T Consensus       136 ----------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~  193 (284)
T cd07836         136 ----------------------RGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAE  193 (284)
T ss_pred             ----------------------CCcEEEeecchhhhhcCCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHH
Confidence                                  45799999999864322   22345678999999998764 47899999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||.+.+      .......+.+..+.+....+........+.....           .....  ....+....+
T Consensus       194 l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~~~~  254 (284)
T cd07836         194 MITGRPLFPGTN------NEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFP-----------RYPPQ--DLQQLFPHAD  254 (284)
T ss_pred             HHhCCCCCCCCC------cHHHHHHHHHHhCCCChhhHHHHhcCchhccccc-----------CCChH--HHHHHhhhcC
Confidence            999999997543      4455666666655554433321111111100000           00000  0011122346


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ..+.++|.+||+.||.+||++.++|+||||
T Consensus       255 ~~~~~~i~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         255 PLGIDLLHRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             cHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            789999999999999999999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-40  Score=325.39  Aligned_cols=249  Identities=24%  Similarity=0.378  Sum_probs=201.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc------chHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +.|.+.+.||+|+||.||+|.+..+++.||+|.+.....      ....+.+|+.+++++      +||||+++++++. 
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~-   74 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNL------QHERIVQYYGCLR-   74 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhC------CCCCeeeeEEEEc-
Confidence            469999999999999999999999999999998764321      234577899999998      7888999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         ....+++||||+ +++|.+++...  ..+++..+..++.||+.||.|||+. ||+||||||+||+++.         
T Consensus        75 ---~~~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dl~p~nilv~~---------  139 (263)
T cd06625          75 ---DDETLSIFMEYMPGGSVKDQLKAY--GALTETVTRKYTRQILEGVEYLHSN-MIVHRDIKGANILRDS---------  139 (263)
T ss_pred             ---cCCeEEEEEEECCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC---------
Confidence               446999999999 88999988643  3488999999999999999999996 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (263)
T cd06625         140 --------------------------------------------------------------------------------  139 (263)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 ++.++|+|||.+......      .....|+..|+|||++.+..++.++||||
T Consensus       140 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  192 (263)
T cd06625         140 ---------------------------AGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWS  192 (263)
T ss_pred             ---------------------------CCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHH
Confidence                                       456999999998643211      13356788999999999988999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||....         ....+......                                     ....
T Consensus       193 lG~il~el~~g~~p~~~~~---------~~~~~~~~~~~-------------------------------------~~~~  226 (263)
T cd06625         193 VGCTVVEMLTEKPPWAEFE---------AMAAIFKIATQ-------------------------------------PTNP  226 (263)
T ss_pred             HHHHHHHHHhCCCCccccc---------hHHHHHHHhcc-------------------------------------CCCC
Confidence            9999999999999995321         11111111000                                     0011


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .++...+..+.+||.+||..||.+|||+.++|+||||
T Consensus       227 ~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  263 (263)
T cd06625         227 QLPSHVSPDARNFLRRTFVENAKKRPSAEELLRHFFV  263 (263)
T ss_pred             CCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhCCCC
Confidence            2334456789999999999999999999999999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-40  Score=327.08  Aligned_cols=258  Identities=25%  Similarity=0.381  Sum_probs=206.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC--C
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG--P  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~--~  118 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.........+.+|+.+++++.     .|+||+++++.|....  .
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~~~~~~~~~~   79 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYS-----NHPNIATFYGAFIKKNPPG   79 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhc-----CCCChheEEEEEEecCCCC
Confidence            47999999999999999999999989999999998877665677889999999984     5889999999998654  2


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                      .+..+|+||||+ +++|.+++....  ...+++..+..++.||+.||.|||++ ||+|+||+|+||+++.          
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~-~i~H~~l~p~ni~~~~----------  148 (275)
T cd06608          80 NDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN-KVIHRDIKGQNILLTK----------  148 (275)
T ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCHHHEEEcc----------
Confidence            356799999999 789998886543  34589999999999999999999997 9999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (275)
T cd06608         149 --------------------------------------------------------------------------------  148 (275)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcC-----CCCCCcchhH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLG-----SKYSTPADLW  347 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~-----~~~~~~~DiW  347 (530)
                                                ++.++|+|||++.....   ......|+..|+|||++..     ..++.++|||
T Consensus       149 --------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~  202 (275)
T cd06608         149 --------------------------NAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVW  202 (275)
T ss_pred             --------------------------CCeEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHH
Confidence                                      45699999999864322   2344568999999999864     2477899999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|.+||....         ....+.......+.                                    .
T Consensus       203 slG~il~~l~~g~~p~~~~~---------~~~~~~~~~~~~~~------------------------------------~  237 (275)
T cd06608         203 SLGITAIELADGKPPLCDMH---------PMRALFKIPRNPPP------------------------------------T  237 (275)
T ss_pred             HhHHHHHHHHhCCCCccccc---------hHHHHHHhhccCCC------------------------------------C
Confidence            99999999999999995322         11111111110000                                    0


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ...+...+..+.+||.+||..||.+|||+.++++|||+
T Consensus       238 ~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~~~~  275 (275)
T cd06608         238 LKSPENWSKKFNDFISECLIKNYEQRPFMEELLEHPFI  275 (275)
T ss_pred             CCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhcCCCC
Confidence            01122345789999999999999999999999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.4e-40  Score=330.37  Aligned_cols=259  Identities=26%  Similarity=0.434  Sum_probs=204.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|++++.||+|+||.||+|.+..+++.||+|.++..  ......+.+|+.+++++      .|+||+++++.+.    .
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~----~   70 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKA------VSPYIVDFYGAFF----I   70 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhc------CCCcHHhhhhhee----c
Confidence            3689999999999999999999999999999987653  22245678899999998      7888999999988    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYAD-YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~-~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....|+||||+ +++|..++.... ...+++..+..++.||+.||.|||++.||+||||||+|||++.            
T Consensus        71 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~------------  138 (286)
T cd06622          71 EGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNG------------  138 (286)
T ss_pred             CCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECC------------
Confidence            47899999999 889988876431 2358999999999999999999996459999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (286)
T cd06622         139 --------------------------------------------------------------------------------  138 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCC------CCCCcchhHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGS------KYSTPADLWSFA  350 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~------~~~~~~DiWSlG  350 (530)
                                              +..++|+|||.+..... ......+++.|+|||++.+.      .++.++||||||
T Consensus       139 ------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG  194 (286)
T cd06622         139 ------------------------NGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLG  194 (286)
T ss_pred             ------------------------CCCEEEeecCCcccccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHhHH
Confidence                                    45699999999865422 23345688899999998643      358899999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|..||....      .......+..+....+                                      ..+
T Consensus       195 ~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~--------------------------------------~~~  230 (286)
T cd06622         195 LSILEMALGRYPYPPET------YANIFAQLSAIVDGDP--------------------------------------PTL  230 (286)
T ss_pred             HHHHHHHhCCCCCCCcc------hhhHHHHHHHHhhcCC--------------------------------------CCC
Confidence            99999999999996432      1111111111111111                                      122


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      +...+.++.+||.+||+.||.+||++.+++.||||.....
T Consensus       231 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~~~~~~~~  270 (286)
T cd06622         231 PSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWLVKYKN  270 (286)
T ss_pred             CcccCHHHHHHHHHHcccCcccCCCHHHHhcChhhhhccC
Confidence            3346788999999999999999999999999999986543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=3.1e-40  Score=329.99  Aligned_cols=261  Identities=28%  Similarity=0.423  Sum_probs=208.7

Q ss_pred             cccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           33 VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        33 ~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..|+..  .+|++.+.||+|+||.||+|.+..+++.||+|.+.... ...+.+.+|+.+++.+      .|+||+++++
T Consensus        13 ~~~~~~~--~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~------~h~~v~~~~~   84 (296)
T cd06654          13 VSVGDPK--KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN------KNPNIVNYLD   84 (296)
T ss_pred             cccCCcc--cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhC------CCCCEeeEEE
Confidence            4555554  69999999999999999999999999999999877543 3346678899999988      7888999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      .|..    +.+.|+||||+ +++|.+++..   ..+++.++..++.||+.||+|||++ ||+||||||+|||++.     
T Consensus        85 ~~~~----~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~ql~~aL~~LH~~-gi~H~dLkp~Nill~~-----  151 (296)
T cd06654          85 SYLV----GDELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLGM-----  151 (296)
T ss_pred             EEEe----CCEEEEeecccCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEcC-----
Confidence            9884    47899999999 8899998853   3488999999999999999999997 9999999999999954     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (296)
T cd06654         152 --------------------------------------------------------------------------------  151 (296)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                     +..++|+|||.+.....   ......|++.|+|||.+.+..++.++|||
T Consensus       152 -------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~  200 (296)
T cd06654         152 -------------------------------DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIW  200 (296)
T ss_pred             -------------------------------CCCEEECccccchhccccccccCcccCCccccCHHHHcCCCCCccchHH
Confidence                                           45689999999865322   22345789999999999988899999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|..||.....      ...+..+. ..+..                                      .
T Consensus       201 s~Gvil~~l~~g~~pf~~~~~------~~~~~~~~-~~~~~--------------------------------------~  235 (296)
T cd06654         201 SLGIMAIEMIEGEPPYLNENP------LRALYLIA-TNGTP--------------------------------------E  235 (296)
T ss_pred             HHHHHHHHHHhCCCCCCCCCH------HHhHHHHh-cCCCC--------------------------------------C
Confidence            999999999999999954321      11111100 00000                                      0


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ...+...+..+.+||.+||..||.+|||+.++|.||||.....
T Consensus       236 ~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~~  278 (296)
T cd06654         236 LQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKP  278 (296)
T ss_pred             CCCccccCHHHHHHHHHHCcCCcccCcCHHHHhhChhhhccCC
Confidence            0112345577899999999999999999999999999987543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-40  Score=328.54  Aligned_cols=276  Identities=30%  Similarity=0.480  Sum_probs=212.8

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      |++.+.||.|++|.||+|.+..+|+.||+|++....   .....+.+|+.+++.+      +|+||+++++++.    .+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l------~~~~iv~~~~~~~----~~   70 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKEL------NHPNIVRLLDVVH----SE   70 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhc------CCCCccCHhheec----cC
Confidence            678899999999999999999999999999887543   2235677899999999      6888999999998    45


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ...|+||||++++|.+++.......+++..+..++.||+.||+|||++ +++||||+|+||+++.               
T Consensus        71 ~~~~iv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~-~~~H~dl~p~nil~~~---------------  134 (283)
T cd07835          71 NKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH-RVLHRDLKPQNLLIDR---------------  134 (283)
T ss_pred             CeEEEEEeccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCHHHEEEcC---------------
Confidence            799999999988999988765544589999999999999999999997 9999999999999954               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (283)
T cd07835         135 --------------------------------------------------------------------------------  134 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFEL  356 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~el  356 (530)
                                           ++.++|+|||.+.....   ......++..|+|||++.+. .++.++|||||||++|+|
T Consensus       135 ---------------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l  193 (283)
T cd07835         135 ---------------------EGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEM  193 (283)
T ss_pred             ---------------------CCcEEEeecccccccCCCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHH
Confidence                                 45699999999864322   22344678899999988764 578999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|.+||...+      ....+..+.+.++.+....+........+.......         ....    ........+.
T Consensus       194 ~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~  254 (283)
T cd07835         194 VNRRPLFPGDS------EIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKW---------ARQD----LSKVVPNLDE  254 (283)
T ss_pred             HhCCCCCCCCC------HHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccc---------cccc----hhhhcCCCCH
Confidence            99999996543      344555566666666554432221111110000000         0000    0011234567


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+.+||.+||+.||.+|||+.|++.||||
T Consensus       255 ~~~~li~~~l~~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         255 DGLDLLSKMLVYDPAKRISAKAALQHPYF  283 (283)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHhcCCCC
Confidence            89999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-41  Score=345.28  Aligned_cols=252  Identities=26%  Similarity=0.399  Sum_probs=206.8

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEeccc-ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV  126 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lV  126 (530)
                      -+||+|+||+||-|++..+....|||-+... .....-+..||.+.++|      .|.|||++++.+.    .+.++-|.
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~L------rHkNIVrYLGs~s----enGf~kIF  650 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTL------RHKNIVRYLGSVS----ENGFFKIF  650 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHH------hhHhHHHHhhccC----CCCeEEEE
Confidence            3699999999999999999999999976543 44455677899999999      5677999999977    45699999


Q ss_pred             Eecc-CcCHHHHHHhhccCCC--CHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccc
Q 045988          127 FEYL-GENLLTLIKYADYRGV--PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLL  203 (530)
Q Consensus       127 mE~~-~~~L~~~i~~~~~~~l--~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~  203 (530)
                      ||.+ ||+|.+++.. .++++  .+.++-.+.+||++||.|||.+ .|||||||-+||||..-                 
T Consensus       651 MEqVPGGSLSsLLrs-kWGPlKDNEstm~fYtkQILeGLkYLHen-~IVHRDIKGDNVLvNTy-----------------  711 (1226)
T KOG4279|consen  651 MEQVPGGSLSSLLRS-KWGPLKDNESTMNFYTKQILEGLKYLHEN-KIVHRDIKGDNVLVNTY-----------------  711 (1226)
T ss_pred             eecCCCCcHHHHHHh-ccCCCccchhHHHHHHHHHHHHhhhhhhc-ceeeccccCCcEEEeec-----------------
Confidence            9999 9999999874 55667  8899999999999999999998 99999999999999552                 


Q ss_pred             cccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccccc
Q 045988          204 TKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGIN  283 (530)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (530)
                                                                                                      
T Consensus       712 --------------------------------------------------------------------------------  711 (1226)
T KOG4279|consen  712 --------------------------------------------------------------------------------  711 (1226)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCC--CCCcchhHHHHHHHHHHHh
Q 045988          284 KDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSK--YSTPADLWSFACICFELAT  358 (530)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~--~~~~~DiWSlG~il~ellt  358 (530)
                                        .+.+||+|||.++...   ....++.||..|||||++..++  |+.++|||||||++.||.|
T Consensus       712 ------------------SGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMAT  773 (1226)
T KOG4279|consen  712 ------------------SGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMAT  773 (1226)
T ss_pred             ------------------cceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeecc
Confidence                              4679999999997532   3345678999999999998654  9999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |++||....       ..+ +.|+++ |               +|                     ...+++|...+.++
T Consensus       774 GrPPF~Elg-------spq-AAMFkV-G---------------my---------------------KvHP~iPeelsaea  808 (1226)
T KOG4279|consen  774 GRPPFVELG-------SPQ-AAMFKV-G---------------MY---------------------KVHPPIPEELSAEA  808 (1226)
T ss_pred             CCCCeeecC-------Chh-Hhhhhh-c---------------ce---------------------ecCCCCcHHHHHHH
Confidence            999995321       111 122211 1               11                     11235677889999


Q ss_pred             HHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          439 ADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      +.||.+|+.+||.+||+|.++|..||++.+++.
T Consensus       809 k~FilrcFepd~~~R~sA~~LL~DpFlq~~~kk  841 (1226)
T KOG4279|consen  809 KNFILRCFEPDPCDRPSAKDLLQDPFLQHNNKK  841 (1226)
T ss_pred             HHHHHHHcCCCcccCccHHHhccCcccccCCCC
Confidence            999999999999999999999999999988543

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=5.2e-40  Score=327.30  Aligned_cols=259  Identities=25%  Similarity=0.390  Sum_probs=203.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC-C
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP-N  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~-~  119 (530)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++.........+.+|+.+++++.     +||||+++++++..... .
T Consensus        21 ~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~-----~h~ni~~~~~~~~~~~~~~   95 (291)
T cd06639          21 TDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLP-----NHPNVVKFYGMFYKADKLV   95 (291)
T ss_pred             CCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhc-----CCCCeEEEEEEEEeccccC
Confidence            47899999999999999999999999999999998765544566778999998884     68899999999875421 2


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      +...|+||||+ +++|.+++...  ....+++..++.++.|++.||.|||++ ||+||||||+||+++.           
T Consensus        96 ~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dlkp~nili~~-----------  163 (291)
T cd06639          96 GGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN-RIIHRDVKGNNILLTT-----------  163 (291)
T ss_pred             CCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEEcC-----------
Confidence            35799999999 88999988642  234589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (291)
T cd06639         164 --------------------------------------------------------------------------------  163 (291)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-----CCCCcchhHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-----KYSTPADLWS  348 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-----~~~~~~DiWS  348 (530)
                                               +..++|+|||++.....   ......|+..|+|||++...     .++.++||||
T Consensus       164 -------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~s  218 (291)
T cd06639         164 -------------------------EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWS  218 (291)
T ss_pred             -------------------------CCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHH
Confidence                                     45689999999865322   12345688999999998643     3688999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|++||....         ....+.......+.                                    ..
T Consensus       219 lGvi~~el~~g~~p~~~~~---------~~~~~~~~~~~~~~------------------------------------~~  253 (291)
T cd06639         219 LGITAIELGDGDPPLFDMH---------PVKTLFKIPRNPPP------------------------------------TL  253 (291)
T ss_pred             HHHHHHHHhhCCCCCCCCc---------HHHHHHHHhcCCCC------------------------------------CC
Confidence            9999999999999995322         11111111111100                                    00


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      ..+...+..+.+||.+||..||++||++.|+|+||||+
T Consensus       254 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~~~~~  291 (291)
T cd06639         254 LHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFIK  291 (291)
T ss_pred             CcccccCHHHHHHHHHHhhcChhhCcCHHHHhcCcccC
Confidence            11223446789999999999999999999999999995

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=2e-40  Score=330.46  Aligned_cols=256  Identities=30%  Similarity=0.428  Sum_probs=202.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ..+.|+++++||.|+||.||+|.+..+++.||+|++.... .....+.+|+.+++.+      .|+||+++++.+..   
T Consensus        10 ~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~---   80 (292)
T cd06644          10 PNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATC------NHPYIVKLLGAFYW---   80 (292)
T ss_pred             cchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhC------CCCcEeeeEEEEEe---
Confidence            4578999999999999999999999999999999987543 3345677899999998      78889999999884   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ....|+||||+ +++|..++... ...+++..+..++.||+.||+|||++ ||+||||||+||+++.            
T Consensus        81 -~~~~~lv~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~dlkp~Nili~~------------  145 (292)
T cd06644          81 -DGKLWIMIEFCPGGAVDAIMLEL-DRGLTEPQIQVICRQMLEALQYLHSM-KIIHRDLKAGNVLLTL------------  145 (292)
T ss_pred             -CCeEEEEEecCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHhcC-CeeecCCCcceEEEcC------------
Confidence             46899999999 77777776533 34589999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (292)
T cd06644         146 --------------------------------------------------------------------------------  145 (292)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhc-----CCCCCCcchhHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLL-----GSKYSTPADLWSF  349 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~-----~~~~~~~~DiWSl  349 (530)
                                              ++.++|+|||.+......   .....+++.|+|||++.     ...++.++|||||
T Consensus       146 ------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~sl  201 (292)
T cd06644         146 ------------------------DGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSL  201 (292)
T ss_pred             ------------------------CCCEEEccCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhH
Confidence                                    456999999988643221   23446789999999985     3457889999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|.+||...+         ....+.......+.                                    ...
T Consensus       202 G~il~el~~g~~p~~~~~---------~~~~~~~~~~~~~~------------------------------------~~~  236 (292)
T cd06644         202 GITLIEMAQIEPPHHELN---------PMRVLLKIAKSEPP------------------------------------TLS  236 (292)
T ss_pred             HHHHHHHhcCCCCCcccc---------HHHHHHHHhcCCCc------------------------------------cCC
Confidence            999999999999995432         11111111111100                                    001


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .+...+.++.+||.+||..||++||++.++|+||||..-
T Consensus       237 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  275 (292)
T cd06644         237 QPSKWSMEFRDFLKTALDKHPETRPSAAQLLEHPFVSSV  275 (292)
T ss_pred             CCcccCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccc
Confidence            123445678999999999999999999999999999753

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2.6e-40  Score=329.73  Aligned_cols=281  Identities=32%  Similarity=0.458  Sum_probs=214.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|++.+.||.|+||.||+|.+..+++.||||.++....   ....+.+|+.+++++      .||||+++++++...  
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~~~~~~~--   76 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKL------QHPNIVTVKEVVVGS--   76 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhc------CCCCEEEEEEEEEec--
Confidence            579999999999999999999999999999998875432   233567899999999      688899999998743  


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +....|+||||++++|.+++.... ..+++..++.++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        77 ~~~~~~lv~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~i~H~dl~p~nili~~-------------  141 (293)
T cd07843          77 NLDKIYMVMEYVEHDLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHDN-WILHRDLKTSNLLLNN-------------  141 (293)
T ss_pred             CCCcEEEEehhcCcCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCCHHHEEECC-------------
Confidence            337899999999889999886533 3589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (293)
T cd07843         142 --------------------------------------------------------------------------------  141 (293)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~  354 (530)
                                             .+.++|+|||.+......   .....+++.|+|||.+.+.. ++.++|||||||++|
T Consensus       142 -----------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~  198 (293)
T cd07843         142 -----------------------RGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFA  198 (293)
T ss_pred             -----------------------CCcEEEeecCceeeccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHH
Confidence                                   456999999998754332   23456788999999987644 689999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh-
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK-  433 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  433 (530)
                      +|++|.+||...+      ....+..+...++.++...|...........  ..+   ....   ... .  ...++.. 
T Consensus       199 ~l~~g~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~---~~~-~--~~~~~~~~  261 (293)
T cd07843         199 ELLTKKPLFPGKS------EIDQLNKIFKLLGTPTEKIWPGFSELPGAKK--KTF---TKYP---YNQ-L--RKKFPALS  261 (293)
T ss_pred             HHHhCCCCCCCCC------hHHHHHHHHHHhCCCchHHHHHhhccchhcc--ccc---cccc---chh-h--hccccccC
Confidence            9999999997544      4556666777777665544422110000000  000   0000   000 0  0112222 


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .++.+.+||++||+.||++|||+.|+|.||||
T Consensus       262 ~~~~~~~li~~~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         262 LSDNGFDLLNRLLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             CChHHHHHHHHHhccCccccCCHHHHhcCCCC
Confidence            47789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=4e-40  Score=326.05  Aligned_cols=276  Identities=31%  Similarity=0.497  Sum_probs=210.3

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      |++.++||+|+||.||+|.+..+++.||+|+++...  .......+|+.++.++.     +|+||+++++++...  ...
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~~~~~~~--~~~   73 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLS-----PHPNILRLIEVLFDR--KTG   73 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcC-----CCCCccceEEEEecC--CCC
Confidence            788999999999999999999999999999887642  22233457888888774     589999999998853  336


Q ss_pred             EEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          122 HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       122 ~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      .+++||||+.++|.+.+.... ..+++..+..++.||+.||+|||++ ||+||||||+||+++.                
T Consensus        74 ~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~-~i~H~dl~p~ni~l~~----------------  135 (282)
T cd07831          74 RLALVFELMDMNLYELIKGRK-RPLPEKRVKSYMYQLLKSLDHMHRN-GIFHRDIKPENILIKD----------------  135 (282)
T ss_pred             cEEEEEecCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CceecccCHHHEEEcC----------------
Confidence            899999999889998886433 3589999999999999999999997 9999999999999943                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (282)
T cd07831         136 --------------------------------------------------------------------------------  135 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHHHHHh
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELAT  358 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~ellt  358 (530)
                                           +.++|+|||.+.....  ......+++.|+|||++.. ..++.++|||||||++|+|++
T Consensus       136 ---------------------~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~  194 (282)
T cd07831         136 ---------------------DILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILS  194 (282)
T ss_pred             ---------------------CCeEEEecccccccccCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHc
Confidence                                 3589999999975432  2344568999999998754 457899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh-hhhccCChhcHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL-IEKYDFSEKDAND  437 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  437 (530)
                      |.+||.+.+      ..+....+...+|..+..+.........     ..+      .   ..... ..........+..
T Consensus       195 ~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~---~~~~~~~~~~~~~~~~~~~  254 (282)
T cd07831         195 LFPLFPGTN------ELDQIAKIHDVLGTPDAEVLKKFRKSRH-----MNY------N---FPSKKGTGLRKLLPNASAE  254 (282)
T ss_pred             CCcCCCCCC------HHHHHHHHHHHcCCCCHHHHHhhccccc-----ccc------c---CcccccccHHHHcccccHH
Confidence            999996543      4556677777777777655311110000     000      0   00000 0000112245789


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      +.+||.+||.+||.+||++.++|.||||
T Consensus       255 ~~~li~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         255 GLDLLKKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             HHHHHHHHhccCcccccCHHHHhhCCCC
Confidence            9999999999999999999999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=4e-40  Score=335.03  Aligned_cols=286  Identities=30%  Similarity=0.465  Sum_probs=217.5

Q ss_pred             CCCEEE-EEEeccccceEEEEEEeCCCCeEEEEEEecccccch---------------HHHHHHHHHHHHhhcCCCCCCc
Q 045988           41 NGRYVV-QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYT---------------EAALDEIKILKQIAEGDPDDKK  104 (530)
Q Consensus        41 ~~~y~i-~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~---------------~~~~~Ei~il~~l~~~~~~~h~  104 (530)
                      .++|.. .+.||.|+||+||+|.+..+++.||||+++......               ..+.+|+.+++.+      .|+
T Consensus         7 ~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~   80 (335)
T PTZ00024          7 SERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEI------KHE   80 (335)
T ss_pred             ccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhC------CCc
Confidence            467865 577999999999999999999999999876543211               2467899999999      788


Q ss_pred             ceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          105 CVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       105 ~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                      ||+++++++.    .+...|+||||+.++|.+++..  ...+++..+..++.||+.||+|||++ ||+||||||+||+++
T Consensus        81 ~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~l~~--~~~~~~~~~~~~~~ql~~aL~~LH~~-~i~H~dl~~~nill~  153 (335)
T PTZ00024         81 NIMGLVDVYV----EGDFINLVMDIMASDLKKVVDR--KIRLTESQVKCILLQILNGLNVLHKW-YFMHRDLSPANIFIN  153 (335)
T ss_pred             ceeeeeEEEe----cCCcEEEEEeccccCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC-CeecccccHHHeEEC
Confidence            8999999998    4579999999998899998864  33489999999999999999999997 999999999999995


Q ss_pred             eccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 045988          185 SMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVE  264 (530)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (530)
                      .                                                                               
T Consensus       154 ~-------------------------------------------------------------------------------  154 (335)
T PTZ00024        154 S-------------------------------------------------------------------------------  154 (335)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            4                                                                               


Q ss_pred             cccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-----------------cccCCCCCCC
Q 045988          265 DQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-----------------KQFTNDIQTR  327 (530)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-----------------~~~~~~~gt~  327 (530)
                                                           .+.++|+|||.+....                 .......+++
T Consensus       155 -------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (335)
T PTZ00024        155 -------------------------------------KGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTL  197 (335)
T ss_pred             -------------------------------------CCCEEECCccceeeccccccccccccccccccccccccccccc
Confidence                                                 4568999999886432                 1122345688


Q ss_pred             CccCChhhcCC-CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccccc
Q 045988          328 QYRCPEVLLGS-KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH  406 (530)
Q Consensus       328 ~y~aPE~l~~~-~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  406 (530)
                      .|+|||++.+. .++.++|||||||++|+|++|.+||....      ....+..++..++.++...+........+ ...
T Consensus       198 ~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~  270 (335)
T PTZ00024        198 WYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGEN------EIDQLGRIFELLGTPNEDNWPQAKKLPLY-TEF  270 (335)
T ss_pred             CCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCchhhCcchhhcccc-ccc
Confidence            99999998764 47899999999999999999999996543      45667777777777665543222111000 000


Q ss_pred             CccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCCCCC
Q 045988          407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPS  475 (530)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~~  475 (530)
                      ...          ......   ......+..+.+||.+||..||.+|||++|+|.||||+..+....+.
T Consensus       271 ~~~----------~~~~~~---~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~~~~~~~~  326 (335)
T PTZ00024        271 TPR----------KPKDLK---TIFPNASDDAIDLLQSLLKLNPLERISAKEALKHEYFKSDPLPCDPS  326 (335)
T ss_pred             CcC----------CcccHH---HhCcCCChHHHHHHHHHcCCCchhccCHHHHhcCcccCCCCCCCCcc
Confidence            000          000000   11123467899999999999999999999999999999776554433

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=2.8e-40  Score=330.43  Aligned_cols=255  Identities=27%  Similarity=0.431  Sum_probs=205.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .+|++.+.||+|+||.||+|.+..+++.||||.+.... ...+.+.+|+.+++.+      .|+||+++++.|.    .+
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~----~~   88 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMREN------KNPNIVNYLDSYL----VG   88 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhC------CCCCEeeEEEEEe----cC
Confidence            78999999999999999999999999999999886543 3345677899999888      7888999999998    45


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      .+.|+||||+ +++|.+++..   ..+++..+..++.||+.||.|||+. ||+||||||+|||++.              
T Consensus        89 ~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~l~~~L~~LH~~-~i~H~dL~p~Nili~~--------------  150 (297)
T cd06656          89 DELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALDFLHSN-QVIHRDIKSDNILLGM--------------  150 (297)
T ss_pred             CEEEEeecccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEECC--------------
Confidence            7899999999 8899998853   3488999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (297)
T cd06656         151 --------------------------------------------------------------------------------  150 (297)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            ++.++|+|||.+......   .....+++.|+|||.+.+..++.++|+|||||++|+|
T Consensus       151 ----------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l  208 (297)
T cd06656         151 ----------------------DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM  208 (297)
T ss_pred             ----------------------CCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence                                  456999999998653222   2345788999999999988899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||.......      .+..+ ...+.                                      .....+...+.
T Consensus       209 ~tg~~pf~~~~~~~------~~~~~-~~~~~--------------------------------------~~~~~~~~~~~  243 (297)
T cd06656         209 VEGEPPYLNENPLR------ALYLI-ATNGT--------------------------------------PELQNPERLSA  243 (297)
T ss_pred             HhCCCCCCCCCcch------heeee-ccCCC--------------------------------------CCCCCccccCH
Confidence            99999996432110      00000 00000                                      00112234457


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      .+.+||.+||..||.+||++.++|.||||......
T Consensus       244 ~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~~~  278 (297)
T cd06656         244 VFRDFLNRCLEMDVDRRGSAKELLQHPFLKLAKPL  278 (297)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhcCchhcccccc
Confidence            78999999999999999999999999999866543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=7.6e-40  Score=334.09  Aligned_cols=287  Identities=29%  Similarity=0.428  Sum_probs=218.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||||++....   .....+.+|+.+|+++      .|+||++++++|....
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~   87 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM------KHENVIGLLDVFTPDL   87 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhc------CCCCccceeeeecCCc
Confidence            578999999999999999999999999999999876432   2234677899999999      7888999999987542


Q ss_pred             CC--CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          118 PN--GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       118 ~~--~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                      ..  ....++||||++++|..++..   ..+++..++.++.||+.||+|||++ ||+||||||+|||++.          
T Consensus        88 ~~~~~~~~~lv~e~~~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~LH~~-gi~H~dlkp~Nill~~----------  153 (343)
T cd07880          88 SLDRFHDFYLVMPFMGTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYIHAA-GIIHRDLKPGNLAVNE----------  153 (343)
T ss_pred             cccccceEEEEEecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC----------
Confidence            11  135799999999899888753   3589999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (343)
T cd07880         154 --------------------------------------------------------------------------------  153 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                                ++.++|+|||++...........+++.|+|||++.+ ..++.++|+|||||++|
T Consensus       154 --------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~  207 (343)
T cd07880         154 --------------------------DCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMA  207 (343)
T ss_pred             --------------------------CCCEEEeecccccccccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHH
Confidence                                      456999999999766555556678999999999876 35889999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||....      .......+....+..+..+.........       .......  +.....  ....+....
T Consensus       208 ~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~--~~~~~~~~~  270 (343)
T cd07880         208 EMLTGKPLFKGHD------HLDQLMEIMKVTGTPSKEFVQKLQSEDA-------KNYVKKL--PRFRKK--DFRSLLPNA  270 (343)
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHhhcchhH-------HHHHHhc--cccCcc--hHHHhccCC
Confidence            9999999996433      3445555666666655544322111000       0000000  000000  001122345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ++.+.+||.+||+.||.+|||+.++|.||||+....
T Consensus       271 ~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~  306 (343)
T cd07880         271 NPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHD  306 (343)
T ss_pred             ChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcC
Confidence            678999999999999999999999999999986543

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1e-39  Score=333.49  Aligned_cols=287  Identities=30%  Similarity=0.429  Sum_probs=218.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+.+++++      +|+||+++++++....
T Consensus        16 ~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l------~h~~iv~~~~~~~~~~   89 (345)
T cd07877          16 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM------KHENVIGLLDVFTPAR   89 (345)
T ss_pred             cCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHc------CCCcccceeeeeeecc
Confidence            478999999999999999999999999999999886532   2245677899999998      7888999999886432


Q ss_pred             C--CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          118 P--NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       118 ~--~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                      .  .....|+++++++++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+||+++.          
T Consensus        90 ~~~~~~~~~lv~~~~~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIll~~----------  155 (345)
T cd07877          90 SLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAVNE----------  155 (345)
T ss_pred             cccccccEEEEehhcccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCChHHEEEcC----------
Confidence            1  2245889999999999888753   3489999999999999999999997 9999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (345)
T cd07877         156 --------------------------------------------------------------------------------  155 (345)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                                ++.++|+|||++...........+++.|+|||++.+ ..++.++|||||||++|
T Consensus       156 --------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~  209 (345)
T cd07877         156 --------------------------DCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA  209 (345)
T ss_pred             --------------------------CCCEEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHH
Confidence                                      456999999999876555556678999999999876 46889999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||....      ....+..+....+..+..+..........       .........+.. ...   ......
T Consensus       210 el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~---~~~~~~  272 (345)
T cd07877         210 ELLTGRTLFPGTD------HIDQLKLILRLVGTPGAELLKKISSESAR-------NYIQSLTQMPKM-NFA---NVFIGA  272 (345)
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHhhcccHhHH-------HHHHHhcccCCc-chh---hhcCCC
Confidence            9999999996433      34566677777776665554221110000       000000000000 000   001124


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ++.+.+||.+||+.||.+||++.++|.||||+....
T Consensus       273 ~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~~~~  308 (345)
T cd07877         273 NPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  308 (345)
T ss_pred             CHHHHHHHHHHcCCChhhcCCHHHHhcChhhhhcCC
Confidence            678899999999999999999999999999987543

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=9.2e-42  Score=306.96  Aligned_cols=280  Identities=24%  Similarity=0.407  Sum_probs=220.8

Q ss_pred             cccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           31 HAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        31 ~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      +.+..|.   .++|++.+++|+|-|+.||.|.+..+++.++||+++.-.  ...+.+|+.||..|.     .||||++++
T Consensus        30 ~~i~wg~---~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk--kkKIkREikIL~nL~-----gg~NIi~L~   99 (338)
T KOG0668|consen   30 LVIDWGN---QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK--KKKIKREIKILQNLR-----GGPNIIKLL   99 (338)
T ss_pred             eeeeccc---cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH--HHHHHHHHHHHHhcc-----CCCCeeehh
Confidence            4455563   478999999999999999999999999999999988754  567889999999996     789999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ++..++  ......||+||. ..+...+..     .++...++.++++|+.||.|||+. ||+|||+||.|+||+..   
T Consensus       100 DiV~Dp--~SktpaLiFE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS~-GImHRDVKPhNvmIdh~---  168 (338)
T KOG0668|consen  100 DIVKDP--ESKTPSLIFEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHSM-GIMHRDVKPHNVMIDHE---  168 (338)
T ss_pred             hhhcCc--cccCchhHhhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHhc-CcccccCCcceeeechh---
Confidence            999876  557889999999 556555542     378889999999999999999995 99999999999999662   


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (338)
T KOG0668|consen  169 --------------------------------------------------------------------------------  168 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccc--cccccCCCCCCCCccCChhhcCCC-CCCcchh
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSK-YSTPADL  346 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~--~~~~~~~~~gt~~y~aPE~l~~~~-~~~~~Di  346 (530)
                                                      ...++|+|+|+|-.  .....+-.+.+++|--||++.... |+.+.|+
T Consensus       169 --------------------------------~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~  216 (338)
T KOG0668|consen  169 --------------------------------LRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDM  216 (338)
T ss_pred             --------------------------------hceeeeeecchHhhcCCCceeeeeeehhhcCCchheeechhccccHHH
Confidence                                            34689999999965  334456678899999999998654 8999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchh--------------hhcCCCcccccccccCccccc
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRK--------------IAFGGRYSRDFFNRHGDLRHI  412 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~--------------~~~~~~~~~~~~~~~~~~~~~  412 (530)
                      |||||+|+.|+..+-||-..     ..+.+++..|..++|+.--.              ....++.++..|.+.-     
T Consensus       217 WS~GcmlA~miFrkepFFhG-----~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi-----  286 (338)
T KOG0668|consen  217 WSLGCMLASMIFRKEPFFHG-----HDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFI-----  286 (338)
T ss_pred             HHHHHHHHHHHhccCcccCC-----CCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhC-----
Confidence            99999999999999887322     23789999999999964211              0001111111111100     


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                                 ..+   --.-.++++.|||.++|.+|-.+|+||.|++.||||..
T Consensus       287 -----------~~~---n~hl~~peaiDlldklLrYDHqeRlTakEam~HpyF~~  327 (338)
T KOG0668|consen  287 -----------NSE---NQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHPYFAP  327 (338)
T ss_pred             -----------Ccc---ccccCChHHHHHHHHHHhhccccccchHHHhcCchHHH
Confidence                       000   00123588999999999999999999999999999974

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=8.4e-40  Score=318.94  Aligned_cols=249  Identities=24%  Similarity=0.412  Sum_probs=203.7

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|.+.+.||+|+||.||+|.+..+++.||+|.+...   ......+.+|+++++.+      .||||+++++.+.    .
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   70 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKL------DSSYIIRYYESFL----D   70 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhc------CCCCeehheeeec----c
Confidence            488999999999999999999999999999987643   23456678899999998      7888999999988    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....|+||||+ +++|.+++.......++...+..++.||+.||.|||++ ||+||||||+||+++.             
T Consensus        71 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~-~i~h~dl~~~nili~~-------------  136 (256)
T cd08529          71 KGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK-KILHRDIKSLNLFLDA-------------  136 (256)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcceEEEeC-------------
Confidence            47899999999 89999999765455689999999999999999999997 9999999999999965             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (256)
T cd08529         137 --------------------------------------------------------------------------------  136 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             +..++|+|||++......   .....|++.|+|||++.+..++.++|||||||++|+
T Consensus       137 -----------------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  193 (256)
T cd08529         137 -----------------------YDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYE  193 (256)
T ss_pred             -----------------------CCCEEEcccccceeccCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHH
Confidence                                   456999999998654322   233468899999999999889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....      .......+..  +..                                       ...+...+
T Consensus       194 l~~g~~p~~~~~------~~~~~~~~~~--~~~---------------------------------------~~~~~~~~  226 (256)
T cd08529         194 CCTGKHPFDANN------QGALILKIIR--GVF---------------------------------------PPVSQMYS  226 (256)
T ss_pred             HHhCCCCCCCCC------HHHHHHHHHc--CCC---------------------------------------CCCccccC
Confidence            999999996432      1111111100  000                                       01122345


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ..+.++|.+||+.+|++||++.+++.|||+
T Consensus       227 ~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         227 QQLAQLIDQCLTKDYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHhhCCCC
Confidence            789999999999999999999999999996

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=5.2e-40  Score=326.23  Aligned_cols=258  Identities=26%  Similarity=0.406  Sum_probs=202.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC-CC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG-PN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~-~~  119 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.........+.+|+.+++.+.     +|+||+++++++.... ..
T Consensus        17 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~~~~~~~~~~~   91 (286)
T cd06638          17 SDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALS-----DHPNVVKFYGMYYKKDVKN   91 (286)
T ss_pred             ccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHh-----cCCCeeeeeeeeeecccCC
Confidence            47999999999999999999999999999999988765444566788999999985     5889999999875432 24


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      +...++||||+ +++|.+++...  ....+++..+..++.|++.||.|||++ +|+||||||+||+++.           
T Consensus        92 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nili~~-----------  159 (286)
T cd06638          92 GDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN-KTIHRDVKGNNILLTT-----------  159 (286)
T ss_pred             CCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC-CccccCCCHHhEEECC-----------
Confidence            56899999999 88999887532  223488999999999999999999997 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (286)
T cd06638         160 --------------------------------------------------------------------------------  159 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcC-----CCCCCcchhHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLG-----SKYSTPADLWS  348 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~-----~~~~~~~DiWS  348 (530)
                                               +..++|+|||++.....   ......|++.|+|||++..     ..++.++||||
T Consensus       160 -------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~s  214 (286)
T cd06638         160 -------------------------EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWS  214 (286)
T ss_pred             -------------------------CCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhh
Confidence                                     45689999999865332   2234568999999999853     44788999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||.....         ...+.......+.                                    ..
T Consensus       215 lGvi~~el~~g~~p~~~~~~---------~~~~~~~~~~~~~------------------------------------~~  249 (286)
T cd06638         215 LGITAIELGDGDPPLADLHP---------MRALFKIPRNPPP------------------------------------TL  249 (286)
T ss_pred             HHHHHHHHhcCCCCCCCCch---------hHHHhhccccCCC------------------------------------cc
Confidence            99999999999999953221         1111111000000                                    00


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ..+...+..+.+||.+||+.||.+|||+.|+|+|+||
T Consensus       250 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~~~  286 (286)
T cd06638         250 HQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             cCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcccC
Confidence            1112235679999999999999999999999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=4.3e-40  Score=330.57  Aligned_cols=283  Identities=31%  Similarity=0.430  Sum_probs=213.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|.+.++||+|+||.||+|.+..+++.||||++....   .......+|+++++.+      +|+||+++++.+....
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~~   80 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKL------KHPNVVPLIDMAVERP   80 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhc------CCCCccchhhheeccc
Confidence            479999999999999999999999999999999876432   2234567899999999      7888999999886542


Q ss_pred             C----CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          118 P----NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       118 ~----~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .    ....+++||||++++|...+... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        81 ~~~~~~~~~~~lv~~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~l~~al~~lH~~-~i~H~dl~p~nil~~~--------  150 (311)
T cd07866          81 DKSKRKRGSVYMVTPYMDHDLSGLLENP-SVKLTESQIKCYMLQLLEGINYLHEN-HILHRDIKAANILIDN--------  150 (311)
T ss_pred             ccccccCceEEEEEecCCcCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEECC--------
Confidence            1    23578999999988888877643 23599999999999999999999997 9999999999999955        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (311)
T cd07866         151 --------------------------------------------------------------------------------  150 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--------------cCCCCCCCCccCChhhcCC-
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--------------FTNDIQTRQYRCPEVLLGS-  338 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--------------~~~~~gt~~y~aPE~l~~~-  338 (530)
                                                  ++.++|+|||++......              .+...+++.|+|||++.+. 
T Consensus       151 ----------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  202 (311)
T cd07866         151 ----------------------------QGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGER  202 (311)
T ss_pred             ----------------------------CCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCC
Confidence                                        457899999998643211              1234568889999998764 


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccC
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (530)
                      .++.++|||||||++|+|++|.+||.+.+      .......+....+.++...+...........       ....  .
T Consensus       203 ~~~~~~Dv~slG~il~el~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~  267 (311)
T cd07866         203 RYTTAVDIWGIGCVFAEMFTRRPILQGKS------DIDQLHLIFKLCGTPTEETWPGWRSLPGCEG-------VHSF--T  267 (311)
T ss_pred             ccCchhHhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChhhchhhhhcccccc-------cccC--C
Confidence            58999999999999999999999997544      4566777777777665543322111110000       0000  0


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .........   .......+.+||.+||..||.+|||+.|+|.||||
T Consensus       268 ~~~~~~~~~---~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         268 NYPRTLEER---FGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             CCCccHHHH---cccCChhHHHHHHHHcccCcccCcCHHHHhcCCCC
Confidence            000001110   11234678999999999999999999999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=8.5e-40  Score=331.64  Aligned_cols=289  Identities=29%  Similarity=0.470  Sum_probs=222.5

Q ss_pred             CcEe-eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           36 GDTF-KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        36 g~~~-~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      |+.+ ..++|++.+.||.|+||.||+|.+..+++.||||.+.+.   ......+.+|+.+++.+      .||||+++++
T Consensus         3 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~   76 (328)
T cd07856           3 GTVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHL------RHENIISLSD   76 (328)
T ss_pred             cceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhc------CCCCeeeEee
Confidence            4443 357899999999999999999999999999999986542   22346677899999999      7888999999


Q ss_pred             eeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +|...   ....|+||||++++|..++..   ..+++..+..++.||+.||+|||++ ||+||||||.|||++.      
T Consensus        77 ~~~~~---~~~~~lv~e~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~aL~~LH~~-~iiH~dl~p~Nili~~------  143 (328)
T cd07856          77 IFISP---LEDIYFVTELLGTDLHRLLTS---RPLEKQFIQYFLYQILRGLKYVHSA-GVVHRDLKPSNILINE------  143 (328)
T ss_pred             eEecC---CCcEEEEeehhccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEeECC------
Confidence            98742   357899999998899888752   3488899999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (328)
T cd07856         144 --------------------------------------------------------------------------------  143 (328)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CCCCCcchhHHHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFA  350 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG  350 (530)
                                                    .+.++|+|||.+...........++..|+|||++.+ ..++.++||||||
T Consensus       144 ------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG  193 (328)
T cd07856         144 ------------------------------NCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAG  193 (328)
T ss_pred             ------------------------------CCCEEeCccccccccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHH
Confidence                                          456999999999765544555678899999999866 5689999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||....      .......+.+.+|.+|.++........       .+..+...........    ...
T Consensus       194 ~il~el~tg~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~  256 (328)
T cd07856         194 CIFAEMLEGKPLFPGKD------HVNQFSIITDLLGTPPDDVINTICSEN-------TLRFVQSLPKREPVPF----SEK  256 (328)
T ss_pred             HHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhccchh-------hHHHHhhccccCCCcH----HHH
Confidence            99999999999996443      355667777888888877653221110       0000000000000000    001


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ....+..+.+||++||+.+|++|||+.++|.||||.....
T Consensus       257 ~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~~~~~~~~~  296 (328)
T cd07856         257 FKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYLAPYHD  296 (328)
T ss_pred             cCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCCccccccC
Confidence            1234678999999999999999999999999999986544

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=4.2e-40  Score=335.86  Aligned_cols=285  Identities=28%  Similarity=0.444  Sum_probs=205.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|.+.+.||.|+||.||+|.+..+++.||+|++.... .....+.+|+++++++      .||||+++++.+...+..
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l------~h~~i~~~~~~~~~~~~~   77 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRL------DHDNIVKVYEVLGPSGSD   77 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhc------CCCcchhhHhhhcccccc
Confidence            479999999999999999999999999999999876543 3345678899999999      788899999887754321


Q ss_pred             ----------CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          120 ----------GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       120 ----------~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                                ....|+||||++++|.+++..   ..+++..++.++.||+.||.|||++ ||+||||||+||+++..   
T Consensus        78 ~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~-givH~dikp~Nili~~~---  150 (342)
T cd07854          78 LTEDVGSLTELNSVYIVQEYMETDLANVLEQ---GPLSEEHARLFMYQLLRGLKYIHSA-NVLHRDLKPANVFINTE---  150 (342)
T ss_pred             cccccccccccceEEEEeecccccHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEcCC---
Confidence                      136899999998898888753   3489999999999999999999997 99999999999999531   


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (342)
T cd07854         151 --------------------------------------------------------------------------------  150 (342)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcC-CCCCC
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLG-SKYST  342 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~-~~~~~  342 (530)
                                                      ...++|+|||.+......      .....++..|+|||++.+ ..++.
T Consensus       151 --------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  198 (342)
T cd07854         151 --------------------------------DLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTK  198 (342)
T ss_pred             --------------------------------CceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCc
Confidence                                            345899999998654221      123367889999998765 45889


Q ss_pred             cchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchh
Q 045988          343 PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       343 ~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      ++|||||||++|+|++|..||....      .......+..............      +.....   .......+....
T Consensus       199 ~~DiwSlGvil~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~  263 (342)
T cd07854         199 AIDMWAAGCIFAEMLTGKPLFAGAH------ELEQMQLILESVPVVREEDRNE------LLNVIP---SFVRNDGGEPRR  263 (342)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCChHHhhh------hhhhhh---hhhhhcccccCC
Confidence            9999999999999999999996433      2222222222221111111000      000000   000000000000


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ..   ..+....+.++.+||.+||+.||.+|||+.|+|.||||+..
T Consensus       264 ~~---~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~~  306 (342)
T cd07854         264 PL---RDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYMSCY  306 (342)
T ss_pred             CH---HHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCccccc
Confidence            00   01122356789999999999999999999999999999853

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.7e-40  Score=336.40  Aligned_cols=287  Identities=31%  Similarity=0.461  Sum_probs=220.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|.+.+.||+|+||.||+|++..+++.||||++...   ......+.+|+.+++++      .|+||+++++++....
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~   87 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHM------DHENVIGLLDVFTPAS   87 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhc------cCCCHHHHHHHhhccc
Confidence            57899999999999999999999999999999987643   22345567899999998      7888999999887432


Q ss_pred             C--CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          118 P--NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       118 ~--~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                      .  .....|+|+||++++|.+++..   ..+++..+..++.||+.||+|||+. ||+||||||+||+++.          
T Consensus        88 ~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~~-gi~H~dlkp~Nill~~----------  153 (343)
T cd07851          88 SLEDFQDVYLVTHLMGADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHSA-GIIHRDLKPSNIAVNE----------  153 (343)
T ss_pred             cccccccEEEEEecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEECC----------
Confidence            1  2245899999999999998863   3589999999999999999999996 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (343)
T cd07851         154 --------------------------------------------------------------------------------  153 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                                ++.++|+|||++...........++..|+|||++.+ ..++.++|||||||++|
T Consensus       154 --------------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~  207 (343)
T cd07851         154 --------------------------DCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA  207 (343)
T ss_pred             --------------------------CCCEEEccccccccccccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHH
Confidence                                      456999999999766555566678999999999865 36789999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|+.||....      ....+..+...++.+++.++.+.....  .   .  ......... ......   ......
T Consensus       208 elltg~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~--~---~--~~~~~~~~~-~~~~~~---~~~~~~  270 (343)
T cd07851         208 ELLTGKTLFPGSD------HIDQLKRIMNLVGTPDEELLQKISSES--A---R--NYIQSLPQM-PKKDFK---EVFSGA  270 (343)
T ss_pred             HHHhCCCCCCCCC------hHHHHHHHHHhcCCCCHHHHhhccchh--H---H--HHHHhcccc-CCCCHH---HHhccC
Confidence            9999999996433      456677777777777766543221100  0   0  000000000 000000   011234


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      +..+.+||.+||+.||.+|||+.+||.||||.....
T Consensus       271 s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~~~  306 (343)
T cd07851         271 NPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEYHD  306 (343)
T ss_pred             CHHHHHHHHHhCCCChhhCCCHHHHhcCCCccccCC
Confidence            678999999999999999999999999999986543

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.4e-40  Score=334.69  Aligned_cols=286  Identities=30%  Similarity=0.430  Sum_probs=222.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC-C
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG-P  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~-~  118 (530)
                      +|++.+.||.|+||.||+|.+..+++.||||.+....   .....+.+|+.+++.+      +|+||+++++++.... .
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~~~~   74 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHL------RHENIIGLLDILRPPSPE   74 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhc------CCcchhhhhhhhcccCcc
Confidence            6999999999999999999999999999999877542   3345788899999999      6888999999988542 1


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....+|+||||++++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        75 ~~~~~~lv~e~~~~~l~~~l~~~--~~l~~~~~~~i~~~l~~~l~~LH~~-gi~H~dlkp~nili~~-------------  138 (330)
T cd07834          75 DFNDVYIVTELMETDLHKVIKSP--QPLTDDHIQYFLYQILRGLKYLHSA-NVIHRDLKPSNILVNS-------------  138 (330)
T ss_pred             cccceEEEecchhhhHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC-------------
Confidence            22478999999988898888643  3599999999999999999999997 9999999999999965             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (330)
T cd07834         139 --------------------------------------------------------------------------------  138 (330)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCC-CCCCcchhHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGS-KYSTPADLWSFAC  351 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~  351 (530)
                                             ++.++|+|||.+......      .....+++.|+|||++.+. .++.++|||||||
T Consensus       139 -----------------------~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~  195 (330)
T cd07834         139 -----------------------NCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGC  195 (330)
T ss_pred             -----------------------CCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHH
Confidence                                   457999999999754322      3345689999999999887 7899999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|.+||....      .......+...+|.++...+....       .......+..........    .....
T Consensus       196 il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~----~~~~~  258 (330)
T cd07834         196 IFAELLTRKPLFPGRD------YIDQLNLIVEVLGTPSEEDLKFIT-------SEKARNYLKSLPKKPKKP----LSKLF  258 (330)
T ss_pred             HHHHHHcCCCCcCCCC------HHHHHHHHHHhcCCCChhHhhhcc-------ccchhhHHhhcccCCcch----hHHhc
Confidence            9999999999997654      456677788888877765543111       000000000000000000    00112


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ...+..+.+||.+||++||.+|||+.++|.||||+....
T Consensus       259 ~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         259 PGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             ccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence            235778999999999999999999999999999986543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=4.7e-40  Score=325.92  Aligned_cols=258  Identities=25%  Similarity=0.352  Sum_probs=200.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|++.+.||+|+||.||+|.+..+|+.||||.++....  .......|+.++.+..     +||||+++++++.    .
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~iv~~~~~~~----~   71 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSV-----DCPYTVTFYGALF----R   71 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHc-----CCCCeeeeeEEEe----c
Confidence            479999999999999999999999999999998875432  2334556766644432     7899999999998    4


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ...+|+||||+.++|.+++....  ...+++..+..++.||+.||+|||++.+|+||||||+|||++.            
T Consensus        72 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~------------  139 (283)
T cd06617          72 EGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINR------------  139 (283)
T ss_pred             CCcEEEEhhhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECC------------
Confidence            46799999999989988886532  2358999999999999999999998558999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (283)
T cd06617         140 --------------------------------------------------------------------------------  139 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcC----CCCCCcchhHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLG----SKYSTPADLWSFAC  351 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~----~~~~~~~DiWSlG~  351 (530)
                                              +..++|+|||.+......  .+...|+..|+|||++.+    ..++.++|+|||||
T Consensus       140 ------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~  195 (283)
T cd06617         140 ------------------------NGQVKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGI  195 (283)
T ss_pred             ------------------------CCCEEEeecccccccccccccccccCCccccChhhcCCcccccccCccccchhhHH
Confidence                                    456999999998754322  233568899999999865    45789999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|..||....     .....+.....  +..+.                                      ...
T Consensus       196 ~l~~l~~g~~p~~~~~-----~~~~~~~~~~~--~~~~~--------------------------------------~~~  230 (283)
T cd06617         196 TMIELATGRFPYDSWK-----TPFQQLKQVVE--EPSPQ--------------------------------------LPA  230 (283)
T ss_pred             HHHHHHhCCCCCCccc-----cCHHHHHHHHh--cCCCC--------------------------------------CCc
Confidence            9999999999995311     11122211110  00000                                      001


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ...+.++.+||.+||..+|.+||++.+++.||||....
T Consensus       231 ~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  268 (283)
T cd06617         231 EKFSPEFQDFVNKCLKKNYKERPNYPELLQHPFFELHL  268 (283)
T ss_pred             cccCHHHHHHHHHHccCChhhCcCHHHHhcCchhhhcc
Confidence            12467899999999999999999999999999998754

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=5.4e-40  Score=326.00  Aligned_cols=278  Identities=30%  Similarity=0.486  Sum_probs=207.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|++.++||+|+||.||+|.+..+++.||+|++.....   ..+.+.+|+++++.+      .||||+++++++.    
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----   70 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQL------RHENLVNLIEVFR----   70 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhc------CCcchhhHHHhcc----
Confidence            479999999999999999999998999999998765432   245677899999998      7888999999997    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .+...|+||||+ ++.|..++..  ...+++..+..++.||+.||+|||++ ||+||||+|+||+++.            
T Consensus        71 ~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~h~~l~p~ni~~~~------------  135 (286)
T cd07846          71 RKKRLYLVFEFVDHTVLDDLEKY--PNGLDESRVRKYLFQILRGIEFCHSH-NIIHRDIKPENILVSQ------------  135 (286)
T ss_pred             cCCeEEEEEecCCccHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEECC------------
Confidence            557899999999 5555555432  23489999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (286)
T cd07846         136 --------------------------------------------------------------------------------  135 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il  353 (530)
                                              ++.++|+|||++.....   ......++..|+|||++.+. .++.++|||||||++
T Consensus       136 ------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l  191 (286)
T cd07846         136 ------------------------SGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLV  191 (286)
T ss_pred             ------------------------CCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccccCchHhHHHHHHHH
Confidence                                    45699999999865322   23345688999999998764 478899999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||...+      ..+.+..+....+........       .+..........   . +..............
T Consensus       192 ~el~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~  254 (286)
T cd07846         192 TEMLTGEPLFPGDS------DIDQLYHIIKCLGNLIPRHQE-------IFQKNPLFAGMR---L-PEVKEIEPLEKRFPK  254 (286)
T ss_pred             HHHHcCCCCCCCCc------hHHHHHHHHHHhCCCchhhHH-------HhccchHhhccc---c-ccccCcchHHHhCCC
Confidence            99999999996433      345566666666554332110       000000000000   0 000000000011234


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+..+.+||.+||..||.+||++.++|+||||
T Consensus       255 ~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         255 LSGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             cCHHHHHHHHHHhcCCcccchhHHHHhcCCCC
Confidence            57889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-41  Score=311.79  Aligned_cols=273  Identities=24%  Similarity=0.337  Sum_probs=214.1

Q ss_pred             CCCccccccCcEe--eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCC
Q 045988           27 RGGYHAVRMGDTF--KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        27 ~~~~~~~~~g~~~--~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      ..||--+--|+..  ..+..+.+..||.|+.|+||+++.+.+|...|+|.+..+..  ...+++..+.++.+..     +
T Consensus        75 ~tg~lti~~g~r~~~dindl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~-----d  149 (391)
T KOG0983|consen   75 QTGYLTIGGGQRYQADINDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSH-----D  149 (391)
T ss_pred             CceeEEecCCcccccChHHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhcc-----C
Confidence            4444444334333  23456778999999999999999999999999998876543  3445566666665432     6


Q ss_pred             CcceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEE
Q 045988          103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NIL  182 (530)
                      .|+||+++++|.    .+..++|.||.|..-+..+++. ..+++++..+-.+...++.||.||-.+.|||||||||+|||
T Consensus       150 cpyIV~c~GyFi----~n~dV~IcMelMs~C~ekLlkr-ik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNIL  224 (391)
T KOG0983|consen  150 CPYIVQCFGYFI----TNTDVFICMELMSTCAEKLLKR-IKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNIL  224 (391)
T ss_pred             CCeeeeeeeEEe----eCchHHHHHHHHHHHHHHHHHH-hcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceE
Confidence            899999999999    4567899999997766666654 34569999999999999999999998889999999999999


Q ss_pred             EeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 045988          183 LMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDS  262 (530)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (530)
                      ++.                                                                             
T Consensus       225 lDe-----------------------------------------------------------------------------  227 (391)
T KOG0983|consen  225 LDE-----------------------------------------------------------------------------  227 (391)
T ss_pred             Ecc-----------------------------------------------------------------------------
Confidence            976                                                                             


Q ss_pred             cccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcC---
Q 045988          263 VEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLG---  337 (530)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~---  337 (530)
                                                             .+++||||||++-...  ...+...|.+.|||||.+.-   
T Consensus       228 ---------------------------------------~GniKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~  268 (391)
T KOG0983|consen  228 ---------------------------------------RGNIKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDK  268 (391)
T ss_pred             ---------------------------------------CCCEEeecccccceeecccccccccCCccccCccccCCCCC
Confidence                                                   5789999999996543  33566789999999999964   


Q ss_pred             CCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          338 SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       338 ~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                      ..|+-++||||||++++||.||.+||.+..     .+.+.+..+.+   ..|+.+                         
T Consensus       269 ~kYDiRaDVWSlGITlveLaTg~yPy~~c~-----tdFe~ltkvln---~ePP~L-------------------------  315 (391)
T KOG0983|consen  269 PKYDIRADVWSLGITLVELATGQYPYKGCK-----TDFEVLTKVLN---EEPPLL-------------------------  315 (391)
T ss_pred             CccchhhhhhhhccchhhhhcccCCCCCCC-----ccHHHHHHHHh---cCCCCC-------------------------
Confidence            359999999999999999999999997654     24455554433   222211                         


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                                 ......++++.+|+..||+.|+.+||.-.++|+|||+....
T Consensus       316 -----------~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h~Fi~~ye  356 (391)
T KOG0983|consen  316 -----------PGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEHPFIKRYE  356 (391)
T ss_pred             -----------CcccCcCHHHHHHHHHHhhcCcccCcchHHHhcCcceeecc
Confidence                       11122578999999999999999999999999999998644

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.2e-39  Score=322.21  Aligned_cols=266  Identities=27%  Similarity=0.369  Sum_probs=205.4

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|...++||.|+||.||+|.+..+++.||+|++.....  ....+.+|+++++++      .||||++++++|...  .
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~--~   72 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSC------KSPYIVKYYGAFLDE--S   72 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhC------CCCCeeeeeeEEEcc--C
Confidence            479999999999999999999999999999998875432  456788999999998      788899999998754  3


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      ...+|+||||+ +++|.+++....  ...+++..+..++.||+.||+|||+. |++|+||+|+||+++.           
T Consensus        73 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~-~i~H~dl~~~nil~~~-----------  140 (287)
T cd06621          73 SSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR-KIIHRDIKPSNILLTR-----------  140 (287)
T ss_pred             CCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEec-----------
Confidence            45789999999 889988875422  34488999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (287)
T cd06621         141 --------------------------------------------------------------------------------  140 (287)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                               +..++|+|||++...... .....++..|+|||.+.+..++.++|||||||++|+
T Consensus       141 -------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~  195 (287)
T cd06621         141 -------------------------KGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLE  195 (287)
T ss_pred             -------------------------CCeEEEeeccccccccccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHH
Confidence                                     456999999998653322 234467889999999998889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||...... .....+...   .+.......+                                ..........+
T Consensus       196 l~~g~~p~~~~~~~-~~~~~~~~~---~~~~~~~~~~--------------------------------~~~~~~~~~~~  239 (287)
T cd06621         196 VAQNRFPFPPEGEP-PLGPIELLS---YIVNMPNPEL--------------------------------KDEPGNGIKWS  239 (287)
T ss_pred             HHhCCCCCCcccCC-CCChHHHHH---HHhcCCchhh--------------------------------ccCCCCCCchH
Confidence            99999999754321 001111111   1111000000                                00000011235


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +.+.+||.+||..||.+|||+.|++.||||+..
T Consensus       240 ~~~~~li~~~l~~~p~~Rpt~~eil~~~~~~~~  272 (287)
T cd06621         240 EEFKDFIKQCLEKDPTRRPTPWDMLEHPWIKAQ  272 (287)
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHHhCcccccc
Confidence            778999999999999999999999999999643

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=1.4e-39  Score=325.40  Aligned_cols=254  Identities=28%  Similarity=0.439  Sum_probs=205.4

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .+|++.+.||.|+||.||+|.+..+++.||||.+.... ...+.+.+|+.+++.+      .|+||+++++.+.    .+
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~----~~   88 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKEL------KNPNIVNFLDSFL----VG   88 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhc------CCCceeeeeeeEe----cC
Confidence            57999999999999999999999999999999876432 3356678899999998      7888999999998    45


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...|+||||+ +++|..++..   ..+++..+..++.||+.||+|||++ ||+||||||+||+++.              
T Consensus        89 ~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~-~i~H~dL~p~Nili~~--------------  150 (296)
T cd06655          89 DELFVVMEYLAGGSLTDVVTE---TCMDEAQIAAVCRECLQALEFLHAN-QVIHRDIKSDNVLLGM--------------  150 (296)
T ss_pred             ceEEEEEEecCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEECC--------------
Confidence            7899999999 8899888753   3489999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (296)
T cd06655         151 --------------------------------------------------------------------------------  150 (296)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            ++.++|+|||++......   .....++..|+|||.+.+..++.++|||||||++|+|
T Consensus       151 ----------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~l  208 (296)
T cd06655         151 ----------------------DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM  208 (296)
T ss_pred             ----------------------CCCEEEccCccchhcccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHH
Confidence                                  456999999988653322   2345688999999999988899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||....      ....+..+. ..+.                                      .....+...++
T Consensus       209 ltg~~pf~~~~------~~~~~~~~~-~~~~--------------------------------------~~~~~~~~~~~  243 (296)
T cd06655         209 VEGEPPYLNEN------PLRALYLIA-TNGT--------------------------------------PELQNPEKLSP  243 (296)
T ss_pred             HhCCCCCCCCC------HHHHHHHHH-hcCC--------------------------------------cccCCcccCCH
Confidence            99999996432      111111110 0000                                      00112234567


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .+.+||.+||..||.+||++.+++.||||+....
T Consensus       244 ~~~~li~~~l~~dp~~Rpt~~~il~~~~~~~~~~  277 (296)
T cd06655         244 IFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAKP  277 (296)
T ss_pred             HHHHHHHHHhhcChhhCCCHHHHhhChHhhhccc
Confidence            8999999999999999999999999999986543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-41  Score=316.49  Aligned_cols=302  Identities=30%  Similarity=0.436  Sum_probs=232.0

Q ss_pred             ccccccCc---EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCC
Q 045988           30 YHAVRMGD---TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        30 ~~~~~~g~---~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h  103 (530)
                      ||-+++++   .....||.-++.+|.|+- .|..|.|.-.++.||||.....   .....+..+|..++..+      .|
T Consensus         2 ~~~~~i~~~s~ftv~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v------~~   74 (369)
T KOG0665|consen    2 FYSVEIPDSSTFTVPKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCV------NH   74 (369)
T ss_pred             ceeEEcCCCcceeeeeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhh------cc
Confidence            34455555   112468999999999999 8889999899999999964432   23456778999999999      78


Q ss_pred             cceeEecceeeecCC--CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcE
Q 045988          104 KCVVKLLDHFKHSGP--NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENV  181 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~--~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NI  181 (530)
                      +||++++.+|.-...  .-..+|+|||+|..+|..++.    -.+.-..+..|++|++.|++|||+. ||+||||||+||
T Consensus        75 ~nii~l~n~ftP~~~l~~~~e~y~v~e~m~~nl~~vi~----~elDH~tis~i~yq~~~~ik~lhs~-~IihRdLkPsni  149 (369)
T KOG0665|consen   75 KNIISLLNVFTPQKTLEEFQEVYLVMELMDANLCQVIL----MELDHETISYILYQMLCGIKHLHSA-GIIHRDLKPSNI  149 (369)
T ss_pred             cceeeeeeccCccccHHHHHhHHHHHHhhhhHHHHHHH----HhcchHHHHHHHHHHHHHHHHHHhc-ceeecccCcccc
Confidence            889999999974310  124689999999999999986    2277789999999999999999996 999999999999


Q ss_pred             EEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 045988          182 LLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGD  261 (530)
Q Consensus       182 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (530)
                      ++..                                                                            
T Consensus       150 vv~~----------------------------------------------------------------------------  153 (369)
T KOG0665|consen  150 VVNS----------------------------------------------------------------------------  153 (369)
T ss_pred             eecc----------------------------------------------------------------------------
Confidence            9944                                                                            


Q ss_pred             CcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCC
Q 045988          262 SVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                              +..+|+.|||+|......  .+.++.|+.|+|||++.+-.
T Consensus       154 ----------------------------------------~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~  193 (369)
T KOG0665|consen  154 ----------------------------------------DCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMG  193 (369)
T ss_pred             ----------------------------------------hhheeeccchhhcccCcccccCchhheeeccCchheeccC
Confidence                                                    457999999999765433  57789999999999999999


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      |...+||||+||++.||++|...|++..      ..++..++.+.+|++...+..+.......|-.  ...+.....+..
T Consensus       194 ~ke~vdiwSvGci~gEli~~~Vlf~g~d------~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~--~~~~y~~~~f~~  265 (369)
T KOG0665|consen  194 YKENVDIWSVGCIMGELILGTVLFPGKD------HIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVE--NRPQYQAISFSE  265 (369)
T ss_pred             CcccchhhhhhhHHHHHhhceEEecCch------HHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhh--cChHhhccchhh
Confidence            9999999999999999999999998655      78999999999999987765444332222221  111111111100


Q ss_pred             ch--hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          420 LN--KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       420 ~~--~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      .-  .........+......+++|+.+||..||++|.+++++|+||||+.
T Consensus       266 ~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HPY~~v  315 (369)
T KOG0665|consen  266 LFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHPYIKV  315 (369)
T ss_pred             hCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCCeeee
Confidence            00  0001111222345677899999999999999999999999999983

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-39  Score=332.81  Aligned_cols=286  Identities=28%  Similarity=0.462  Sum_probs=216.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|.+.+.||+|+||.||+|.+..+|+.||||++...   ......+.+|+.+++.+      .|+||++++++|....
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~~~~~~~~~~   87 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHM------QHENVIGLLDVFTSAV   87 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhc------CCCCccchhheecccc
Confidence            36899999999999999999999999999999988653   22335577899999998      7888999999987542


Q ss_pred             C--CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          118 P--NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       118 ~--~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                      .  .....|+||||+..+|..++.    ..+++..+..++.||+.||+|||++ ||+||||||+|||++.          
T Consensus        88 ~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~-~i~H~dlkp~NIll~~----------  152 (342)
T cd07879          88 SGDEFQDFYLVMPYMQTDLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSA-GIIHRDLKPGNLAVNE----------  152 (342)
T ss_pred             cCCCCceEEEEecccccCHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEECC----------
Confidence            1  224679999999877776542    3489999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (342)
T cd07879         153 --------------------------------------------------------------------------------  152 (342)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                                ++.++|+|||++...........+++.|+|||++.+ ..++.++|||||||++|
T Consensus       153 --------------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~  206 (342)
T cd07879         153 --------------------------DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMA  206 (342)
T ss_pred             --------------------------CCCEEEeeCCCCcCCCCCCCCceeeecccChhhhcCccccCchHHHHHHHHHHH
Confidence                                      467999999999765555555678999999999876 45899999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|+.||.+..      ....+..+...+|..+..+.........       ..........+ ....   .......
T Consensus       207 el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~---~~~~~~~  269 (342)
T cd07879         207 EMLTGKTLFKGKD------YLDQLTQILKVTGVPGPEFVQKLEDKAA-------KSYIKSLPKYP-RKDF---STLFPKA  269 (342)
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHHhcccch-------HHHHhhcCCcc-cchH---HHHhcCC
Confidence            9999999997543      3556677777777665544322111000       00000000000 0000   0011234


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      +..+.+||.+||+.||.+||++.++|.||||.....
T Consensus       270 ~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         270 SPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence            677899999999999999999999999999987654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=9e-40  Score=321.05  Aligned_cols=247  Identities=26%  Similarity=0.447  Sum_probs=199.7

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----------chHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      +|.+.+.||+|+||.||+|.+..+++.||+|.+.....          ..+.+.+|+.+++++      .||||++++++
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~   74 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKEL------QHENIVQYLGS   74 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhc------CCCCeeeEEEE
Confidence            57889999999999999999998999999998764321          124567899999999      78889999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +.    ...+.++||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||+++.      
T Consensus        75 ~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lH~~-~ivH~di~p~nil~~~------  141 (267)
T cd06628          75 SL----DADHLNIFLEYVPGGSVAALLNNY--GAFEETLVRNFVRQILKGLNYLHNR-GIIHRDIKGANILVDN------  141 (267)
T ss_pred             EE----eCCccEEEEEecCCCCHHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHhc-CcccccCCHHHEEEcC------
Confidence            88    447899999999 88999998643  4588999999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (267)
T cd06628         142 --------------------------------------------------------------------------------  141 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---------cCCCCCCCCccCChhhcCCCCCC
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---------FTNDIQTRQYRCPEVLLGSKYST  342 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---------~~~~~gt~~y~aPE~l~~~~~~~  342 (530)
                                                    ...++|+|||.+......         .....|+..|+|||.+.+..++.
T Consensus       142 ------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~  191 (267)
T cd06628         142 ------------------------------KGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTR  191 (267)
T ss_pred             ------------------------------CCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCc
Confidence                                          456899999998654311         12345788999999999888999


Q ss_pred             cchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchh
Q 045988          343 PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       343 ~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      ++|+|||||++|+|++|..||....         ....+.......                                  
T Consensus       192 ~~Dv~slG~il~~l~~g~~p~~~~~---------~~~~~~~~~~~~----------------------------------  228 (267)
T cd06628         192 KADIWSLGCLVVEMLTGKHPFPDCT---------QLQAIFKIGENA----------------------------------  228 (267)
T ss_pred             hhhhHHHHHHHHHHhhCCCCCCCcc---------HHHHHHHHhccC----------------------------------
Confidence            9999999999999999999996322         112222111100                                  


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                          ...++...+..+.+||.+||+.||.+||++.|+++||||
T Consensus       229 ----~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         229 ----SPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             ----CCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhhCCCC
Confidence                011233456789999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=1.8e-39  Score=329.83  Aligned_cols=287  Identities=26%  Similarity=0.385  Sum_probs=217.2

Q ss_pred             CEEEEEEeccccceEEEEEEeCCC--CeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQT--SHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~--~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      +|.+.+.||+|+||.||+|.+..+  +..||||.+....   .....+.+|+.+++++.     +||||+++++.+....
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~~~~~~~   75 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFR-----GHKNITCLYDMDIVFP   75 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhc-----CCCChheeeeeeeecc
Confidence            589999999999999999999888  8999999876432   22456778999998884     5899999998765432


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .....+|++|||++++|.+++..  ...+++..++.++.||+.||.|||++ ||+||||||+|||++.            
T Consensus        76 ~~~~~~~~~~e~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~-givH~dlkp~Nili~~------------  140 (332)
T cd07857          76 GNFNELYLYEELMEADLHQIIRS--GQPLTDAHFQSFIYQILCGLKYIHSA-NVLHRDLKPGNLLVNA------------  140 (332)
T ss_pred             ccCCcEEEEEecccCCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHeEEcC------------
Confidence            23457899999999899998863  34589999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (332)
T cd07857         141 --------------------------------------------------------------------------------  140 (332)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-------ccCCCCCCCCccCChhhcC-CCCCCcchhHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-------QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSF  349 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-------~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSl  349 (530)
                                              ++.++|+|||.+.....       ......||+.|+|||++.+ ..++.++|||||
T Consensus       141 ------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~sl  196 (332)
T cd07857         141 ------------------------DCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSV  196 (332)
T ss_pred             ------------------------CCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHH
Confidence                                    45689999999864321       1233578999999998876 468999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|.+||....      ....+..++..+|.++............       ..........+... .   ..
T Consensus       197 Gv~l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~---~~  259 (332)
T cd07857         197 GCILAELLGRKPVFKGKD------YVDQLNQILQVLGTPDEETLSRIGSPKA-------QNYIRSLPNIPKKP-F---ES  259 (332)
T ss_pred             HHHHHHHHhCCcCCCCCC------HHHHHHHHHHHhCCCCHHHHHhhhhhhH-------HHHHHhccccCCcc-h---Hh
Confidence            999999999999996543      5678888888888777654321110000       00000000000000 0   00


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .....+..+.+||.+||++||.+|||+.+++.||||.....
T Consensus       260 ~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~  300 (332)
T cd07857         260 IFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHD  300 (332)
T ss_pred             hCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhcC
Confidence            11234678999999999999999999999999999976543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=7.2e-40  Score=324.76  Aligned_cols=254  Identities=27%  Similarity=0.389  Sum_probs=200.9

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      -|++.+.||+|+||.||+|.+..++..+|+|.+.... .....+.+|+++++.+      .|+||+++++.+.    .+.
T Consensus         6 ~~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~ii~~~~~~~----~~~   75 (282)
T cd06643           6 FWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASC------DHPNIVKLLDAFY----YEN   75 (282)
T ss_pred             HHHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHC------CCCCeeeEEEEEe----eCC
Confidence            3788999999999999999999999999999886543 3345677899999998      7888999999988    447


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ..|+||||+ +++|..++.. ....+++..+..++.||+.||.|||+. ||+||||||+|||++.               
T Consensus        76 ~~~~v~e~~~~~~l~~~~~~-~~~~l~~~~~~~~~~qi~~~L~~LH~~-~i~H~dlkp~nili~~---------------  138 (282)
T cd06643          76 NLWILIEFCAGGAVDAVMLE-LERPLTEPQIRVVCKQTLEALNYLHEN-KIIHRDLKAGNILFTL---------------  138 (282)
T ss_pred             EEEEEEEecCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCcccEEEcc---------------
Confidence            899999999 7788777653 234589999999999999999999997 9999999999999954               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (282)
T cd06643         139 --------------------------------------------------------------------------------  138 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhc-----CCCCCCcchhHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLL-----GSKYSTPADLWSFACI  352 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~-----~~~~~~~~DiWSlG~i  352 (530)
                                           .+.++|+|||++.....   ......++..|+|||++.     +..++.++|||||||+
T Consensus       139 ---------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi  197 (282)
T cd06643         139 ---------------------DGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGIT  197 (282)
T ss_pred             ---------------------CCCEEEccccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHH
Confidence                                 45699999999864322   223456899999999984     3457889999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|.+||...+         ....+.......+.                                    ....+.
T Consensus       198 l~el~~g~~p~~~~~---------~~~~~~~~~~~~~~------------------------------------~~~~~~  232 (282)
T cd06643         198 LIEMAQIEPPHHELN---------PMRVLLKIAKSEPP------------------------------------TLAQPS  232 (282)
T ss_pred             HHHHccCCCCccccC---------HHHHHHHHhhcCCC------------------------------------CCCCcc
Confidence            999999999996432         11111111111000                                    001122


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ..+..+.+||.+||..||.+||++.++++||||+...
T Consensus       233 ~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  269 (282)
T cd06643         233 RWSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVTVNS  269 (282)
T ss_pred             ccCHHHHHHHHHHccCChhhCcCHHHHhcCCCEeccC
Confidence            3457899999999999999999999999999999654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.3e-40  Score=326.76  Aligned_cols=255  Identities=28%  Similarity=0.432  Sum_probs=203.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|++.++||.|+||.||+|.+..++..||+|++.... .....+.+|+.+++++      +|+||+++++.+.    .
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   73 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSEC------KHPNIVGLYEAYF----Y   73 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhC------CCCceeEEEEEEe----c
Confidence            467999999999999999999998899999999887543 2345677899999999      7888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +...|+||||+ +++|.+++.... ..+++..++.++.||+.||.|||++ ||+||||||+||+++.             
T Consensus        74 ~~~~~lv~e~~~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~-~i~h~dl~p~nili~~-------------  138 (280)
T cd06611          74 ENKLWILIEFCDGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFLHSH-KVIHRDLKAGNILLTL-------------  138 (280)
T ss_pred             CCeEEEEeeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhEEECC-------------
Confidence            57899999999 789988876432 3589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (280)
T cd06611         139 --------------------------------------------------------------------------------  138 (280)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhc-----CCCCCCcchhHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLL-----GSKYSTPADLWSFA  350 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~-----~~~~~~~~DiWSlG  350 (530)
                                             ++.++|+|||.+.....   ......+++.|+|||++.     ..+++.++||||||
T Consensus       139 -----------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG  195 (280)
T cd06611         139 -----------------------DGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLG  195 (280)
T ss_pred             -----------------------CCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHH
Confidence                                   45699999998864322   223456899999999985     34578899999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||....         ....+..+....+.                                    .+..
T Consensus       196 ~il~~l~~g~~p~~~~~---------~~~~~~~~~~~~~~------------------------------------~~~~  230 (280)
T cd06611         196 ITLIELAQMEPPHHELN---------PMRVLLKILKSEPP------------------------------------TLDQ  230 (280)
T ss_pred             HHHHHHHhCCCCcccCC---------HHHHHHHHhcCCCC------------------------------------CcCC
Confidence            99999999999996322         11112211111000                                    0112


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +...+.++.+||.+||+.||.+||++.++|+||||...
T Consensus       231 ~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~  268 (280)
T cd06611         231 PSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQ  268 (280)
T ss_pred             cccCCHHHHHHHHHHhccChhhCcCHHHHhcChhhccc
Confidence            23456788999999999999999999999999999854

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=7.3e-40  Score=319.36  Aligned_cols=251  Identities=28%  Similarity=0.424  Sum_probs=204.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.+.||+|+||.||+|....+++.||+|.+..... ...+.+|+++++++      +|+||+++++.+.    ..
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~e~~~~~~l------~~~~i~~~~~~~~----~~   70 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-LQEIIKEISILKQC------DSPYIVKYYGSYF----KN   70 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH-HHHHHHHHHHHHhC------CCCcEeeeeeeee----cC
Confidence            3689999999999999999999998899999999876544 67888999999998      7888999999998    44


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      .+.|++|||+ +++|.+++... ...+++..+..++.||+.||.|||+. ||+||||+|+||+++.              
T Consensus        71 ~~~~l~~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~l~~~l~~lh~~-~i~H~dl~~~ni~~~~--------------  134 (256)
T cd06612          71 TDLWIVMEYCGAGSVSDIMKIT-NKTLTEEEIAAILYQTLKGLEYLHSN-KKIHRDIKAGNILLNE--------------  134 (256)
T ss_pred             CcEEEEEecCCCCcHHHHHHhC-ccCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcceEEECC--------------
Confidence            7899999999 78999988643 34589999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (256)
T cd06612         135 --------------------------------------------------------------------------------  134 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            +..++|+|||++......   .....++..|+|||++.+..++.++|||||||++|+|
T Consensus       135 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l  192 (256)
T cd06612         135 ----------------------EGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEM  192 (256)
T ss_pred             ----------------------CCcEEEcccccchhcccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHH
Confidence                                  456899999998754332   2334578899999999988899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||.....         ...+.......                                    ......+...+.
T Consensus       193 ~~g~~p~~~~~~---------~~~~~~~~~~~------------------------------------~~~~~~~~~~~~  227 (256)
T cd06612         193 AEGKPPYSDIHP---------MRAIFMIPNKP------------------------------------PPTLSDPEKWSP  227 (256)
T ss_pred             HhCCCCCCCcch---------hhhhhhhccCC------------------------------------CCCCCchhhcCH
Confidence            999999964321         01111000000                                    001112233457


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+.+||.+||..||.+|||+.|+|.||||
T Consensus       228 ~~~~~i~~~l~~~P~~Rps~~~il~~~~~  256 (256)
T cd06612         228 EFNDFVKKCLVKDPEERPSAIQLLQHPFI  256 (256)
T ss_pred             HHHHHHHHHHhcChhhCcCHHHHhcCCCC
Confidence            89999999999999999999999999998

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=2.8e-40  Score=324.83  Aligned_cols=253  Identities=24%  Similarity=0.329  Sum_probs=198.8

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ..++|.+.++||+|+||.||+|.+..+++.||+|+++... .....+.+|+.+++.+      +||||+++++.+.    
T Consensus         7 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l------~h~~ii~~~~~~~----   76 (267)
T cd06645           7 PQEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDC------KHSNIVAYFGSYL----   76 (267)
T ss_pred             cHHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhC------CCCCeeeEEEEEE----
Confidence            3568999999999999999999999999999999887543 2234567899999988      7888999999988    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....+|+||||+ +++|.+++..  ...+++..+..++.||+.||.|||++ ||+|+||||+|||++.            
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nili~~------------  141 (267)
T cd06645          77 RRDKLWICMEFCGGGSLQDIYHV--TGPLSESQIAYVSRETLQGLYYLHSK-GKMHRDIKGANILLTD------------  141 (267)
T ss_pred             eCCEEEEEEeccCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEECC------------
Confidence            447899999999 7899998864  34589999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (267)
T cd06645         142 --------------------------------------------------------------------------------  141 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhc---CCCCCCcchhHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLL---GSKYSTPADLWSFAC  351 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~---~~~~~~~~DiWSlG~  351 (530)
                                              ...++|+|||.+......   .....|+..|+|||++.   ...++.++|||||||
T Consensus       142 ------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~  197 (267)
T cd06645         142 ------------------------NGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGI  197 (267)
T ss_pred             ------------------------CCCEEECcceeeeEccCcccccccccCcccccChhhhccccCCCCCchhhhHHHHH
Confidence                                    456999999998643322   23457899999999985   445889999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|..||.....      ...+..+. .....+.                                    .....
T Consensus       198 il~~l~~~~~p~~~~~~------~~~~~~~~-~~~~~~~------------------------------------~~~~~  234 (267)
T cd06645         198 TAIELAELQPPMFDLHP------MRALFLMT-KSNFQPP------------------------------------KLKDK  234 (267)
T ss_pred             HHHHHhcCCCCcccccc------hhhHHhhh-ccCCCCC------------------------------------ccccc
Confidence            99999999999853221      01110000 0000000                                    00001


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPW  464 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~  464 (530)
                      ...+..+.+||.+||..||++||+++++|+|||
T Consensus       235 ~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~~~  267 (267)
T cd06645         235 MKWSNSFHHFVKMALTKNPKKRPTAEKLLQHPF  267 (267)
T ss_pred             CCCCHHHHHHHHHHccCCchhCcCHHHHhcCCC
Confidence            123567899999999999999999999999999

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=1.3e-39  Score=319.66  Aligned_cols=248  Identities=24%  Similarity=0.402  Sum_probs=197.6

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-------chHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +|++.+.||+|+||.||+|.+ .+++.+|+|.+.....       ....+.+|+.+++++      .|+||+++++++. 
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~-   72 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLT-NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSL------KHVNIVQYLGTCL-   72 (265)
T ss_pred             CccccceEeccCCeEEEEEEE-cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhc------CCCCEeeEeeEee-
Confidence            588999999999999999986 5788999998764321       234577899999998      6888999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .....++||||+ +++|.+++...  ..+++..+..++.||+.||+|||+. ||+|+||||+||+++.         
T Consensus        73 ---~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nil~~~---------  137 (265)
T cd06631          73 ---DDNTISIFMEFVPGGSISSILNRF--GPLPEPVFCKYTKQILDGVAYLHNN-CVVHRDIKGNNVMLMP---------  137 (265)
T ss_pred             ---cCCeEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcCHHhEEECC---------
Confidence               447999999999 88999998643  3488999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (265)
T cd06631         138 --------------------------------------------------------------------------------  137 (265)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---------cccCCCCCCCCccCChhhcCCCCCCcch
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---------KQFTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---------~~~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                 ++.++|+|||.+....         .......|+..|+|||++.+..++.++|
T Consensus       138 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~D  190 (265)
T cd06631         138 ---------------------------NGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSD  190 (265)
T ss_pred             ---------------------------CCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhh
Confidence                                       4569999999886431         1123456889999999999888999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|+|++|.+||....      .......+....+..                                     
T Consensus       191 v~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~-------------------------------------  227 (265)
T cd06631         191 IWSIGCTVFEMATGKPPLASMD------RLAAMFYIGAHRGLM-------------------------------------  227 (265)
T ss_pred             HHHHHHHHHHHHhCCCccccCC------hHHHHHHhhhccCCC-------------------------------------
Confidence            9999999999999999995321      111111111000000                                     


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                        ...+...+..+.+||++||..||.+||++.|+|.||||
T Consensus       228 --~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         228 --PRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLRHDFL  265 (265)
T ss_pred             --CCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence              11233456789999999999999999999999999998

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.2e-39  Score=320.24  Aligned_cols=253  Identities=26%  Similarity=0.467  Sum_probs=202.2

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-------cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +|+..+.||+|+||.||+|.+..+++.||+|++....       .....+.+|+.+++++      .|+||+++++++. 
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~-   73 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARL------NHPHIIRMLGATC-   73 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHc------CCCceehhhceec-
Confidence            4888999999999999999999999999999887532       1245678899999999      7888999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .....++||||+ +++|.+++..  ...+++..+..++.||+.||.|||++ ||+||||||+||+++..        
T Consensus        74 ---~~~~~~~v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~ql~~al~~LH~~-~i~H~~i~~~nil~~~~--------  139 (268)
T cd06630          74 ---EDSHFNLFVEWMAGGSVSHLLSK--YGAFKEAVIINYTEQLLRGLSYLHEN-QIIHRDVKGANLLIDST--------  139 (268)
T ss_pred             ---cCCeEEEEEeccCCCcHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcCC--------
Confidence               457899999999 8899998864  34589999999999999999999997 99999999999999431        


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (268)
T cd06630         140 --------------------------------------------------------------------------------  139 (268)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                 ...++|+|||.+......       .....|+..|+|||++.+..++.++|||
T Consensus       140 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~  192 (268)
T cd06630         140 ---------------------------GQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVW  192 (268)
T ss_pred             ---------------------------CCEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchH
Confidence                                       235899999998653321       1234678899999999888899999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|..||.....      ......+.....                                     ....
T Consensus       193 slG~~l~~l~~g~~p~~~~~~------~~~~~~~~~~~~-------------------------------------~~~~  229 (268)
T cd06630         193 SVGCVIIEMATAKPPWNAEKH------SNHLALIFKIAS-------------------------------------ATTA  229 (268)
T ss_pred             HHHHHHHHHHhCCCCCCCCCC------cchHHHHHHHhc-------------------------------------cCCC
Confidence            999999999999999953221      111111111100                                     0001


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      ..++...++++.+||.+||..||.+||++.++|+||||+
T Consensus       230 ~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~~~~~  268 (268)
T cd06630         230 PSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR  268 (268)
T ss_pred             CCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhcCcccC
Confidence            123345568899999999999999999999999999995

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=1.6e-39  Score=317.17  Aligned_cols=249  Identities=22%  Similarity=0.394  Sum_probs=202.8

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++.++||+|+||.||++.+..+++.||||.+...   ......+.+|+.+++++      +|+||+++++.+.    .
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~   70 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNM------KHPNIVQYQESFE----E   70 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhC------CCCCeeeeEeeec----C
Confidence            699999999999999999999999999999987643   22345678899999999      7888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ..+.++||||+ +++|.+++.......+++..+..++.||+.||.|||++ |++|+||+|+|||++.             
T Consensus        71 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~~l~~~nil~~~-------------  136 (256)
T cd08218          71 NGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR-KILHRDIKSQNIFLTK-------------  136 (256)
T ss_pred             CCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEcC-------------
Confidence            57999999999 88999988754444589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (256)
T cd08218         137 --------------------------------------------------------------------------------  136 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             +..++|+|||.+......   .....|++.|+|||++.+..++.++|+|||||++|+
T Consensus       137 -----------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~  193 (256)
T cd08218         137 -----------------------DGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYE  193 (256)
T ss_pred             -----------------------CCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHH
Confidence                                   456899999998654322   223468889999999998889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....      ..+....+  ..+..                                       ...+...+
T Consensus       194 l~~g~~~~~~~~------~~~~~~~~--~~~~~---------------------------------------~~~~~~~~  226 (256)
T cd08218         194 MCTLKHAFEAGN------MKNLVLKI--IRGSY---------------------------------------PPVSSHYS  226 (256)
T ss_pred             HHcCCCCccCCC------HHHHHHHH--hcCCC---------------------------------------CCCcccCC
Confidence            999999995321      11111111  11110                                       01223456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .++.+||.+||+.+|.+||++.++|+||||
T Consensus       227 ~~~~~li~~~l~~~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         227 YDLRNLVSQLFKRNPRDRPSVNSILEKNFI  256 (256)
T ss_pred             HHHHHHHHHHhhCChhhCcCHHHHhhCcCC
Confidence            789999999999999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=2.4e-39  Score=317.91  Aligned_cols=251  Identities=24%  Similarity=0.369  Sum_probs=200.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc------cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .+|++.+.||+|+||.||+|.+..+++.||||.+....      .....+.+|+.+++++      .|+||+++++.+..
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~   75 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNL------LHERIVQYYGCLRD   75 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhc------CCCCeeeEEeEecc
Confidence            47999999999999999999999999999999875321      1234677899999999      78889999998875


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                      .  ....+++||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+|+||||+|||++.         
T Consensus        76 ~--~~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dl~p~nil~~~---------  141 (265)
T cd06652          76 P--MERTLSIFMEHMPGGSIKDQLKSY--GALTENVTRKYTRQILEGVSYLHSN-MIVHRDIKGANILRDS---------  141 (265)
T ss_pred             C--CCceEEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEecC---------
Confidence            3  245789999999 88999988643  3488999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (265)
T cd06652         142 --------------------------------------------------------------------------------  141 (265)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 ++.++|+|||.+.....      ......|+..|+|||++.+..++.++||||
T Consensus       142 ---------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  194 (265)
T cd06652         142 ---------------------------VGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWS  194 (265)
T ss_pred             ---------------------------CCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHH
Confidence                                       45689999999864321      223346888999999998888999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||...         .....+........                                     ..
T Consensus       195 lG~il~el~~g~~p~~~~---------~~~~~~~~~~~~~~-------------------------------------~~  228 (265)
T cd06652         195 VGCTVVEMLTEKPPWAEF---------EAMAAIFKIATQPT-------------------------------------NP  228 (265)
T ss_pred             HHHHHHHHhhCCCCCCcc---------chHHHHHHHhcCCC-------------------------------------CC
Confidence            999999999999999532         11122222211100                                     01


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      ..+...+..+.++|.+||. +|.+||+++|+++|||+.
T Consensus       229 ~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~~~~~  265 (265)
T cd06652         229 VLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRHTFVH  265 (265)
T ss_pred             CCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcCcccC
Confidence            1233456788999999995 999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=1.8e-39  Score=318.50  Aligned_cols=255  Identities=27%  Similarity=0.380  Sum_probs=202.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|++.+.||.|+||+||+|....++..+|+|++....  .....+.+|+.+++.+      .|+||+++++.+.    .
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~   70 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQC------NHPNVVKYYTSFV----V   70 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhc------CCCCEEEEEEEEe----e
Confidence            47999999999999999999998899999999986543  2346678899999888      7888999999987    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADY-RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~-~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      +...++|||++ +++|.+++..... ..+++..+..++.||+.||+|||++ ||+||||||+||+++.            
T Consensus        71 ~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~-~i~h~~l~p~ni~~~~------------  137 (267)
T cd06610          71 GDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN-GQIHRDIKAGNILLGE------------  137 (267)
T ss_pred             CCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHhEEEcC------------
Confidence            57899999999 8899999875433 4589999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (267)
T cd06610         138 --------------------------------------------------------------------------------  137 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcCC-CCCCcchhHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLGS-KYSTPADLWSF  349 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSl  349 (530)
                                              +..++|+|||++......       ....+|+..|+|||++... .++.++|+|||
T Consensus       138 ------------------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~sl  193 (267)
T cd06610         138 ------------------------DGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSF  193 (267)
T ss_pred             ------------------------CCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhH
Confidence                                    456899999998643322       1334689999999999876 68999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|..||...+.         ...+.......+....                                 ...
T Consensus       194 G~i~~~l~~g~~p~~~~~~---------~~~~~~~~~~~~~~~~---------------------------------~~~  231 (267)
T cd06610         194 GITAIELATGAAPYSKYPP---------MKVLMLTLQNDPPSLE---------------------------------TGA  231 (267)
T ss_pred             hHHHHHHHhCCCCccccCh---------hhhHHHHhcCCCCCcC---------------------------------Ccc
Confidence            9999999999999964321         1111111111111000                                 000


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .....+..+.+||.+||..||.+||++.+++.||||
T Consensus       232 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         232 DYKKYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             ccccccHHHHHHHHHHcCCChhhCcCHHHHhhCCCC
Confidence            012446788999999999999999999999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.4e-39  Score=326.48  Aligned_cols=256  Identities=20%  Similarity=0.338  Sum_probs=193.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCC----------------CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQ----------------TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDP  100 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~----------------~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~  100 (530)
                      +..++|.+.++||+|+||.||+|.+..                ++..||+|++....  .....+.+|+.+|.++     
T Consensus         2 ~~~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-----   76 (304)
T cd05096           2 FPRGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRL-----   76 (304)
T ss_pred             CchhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhc-----
Confidence            345789999999999999999997532                34589999887642  2345678999999998     


Q ss_pred             CCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc-----------------CCCCHHHHHHHHHHHHHHH
Q 045988          101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY-----------------RGVPLHMVKEICFHILVGL  162 (530)
Q Consensus       101 ~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~-----------------~~l~~~~~~~i~~qll~aL  162 (530)
                       .||||+++++++..    ....|+||||+ +++|.+++.....                 ..+++..+..++.||+.||
T Consensus        77 -~h~niv~~~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al  151 (304)
T cd05096          77 -KDPNIIRLLGVCVD----EDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGM  151 (304)
T ss_pred             -CCCCeeEEEEEEec----CCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence             78889999999984    46799999999 8899998864321                 2367788999999999999


Q ss_pred             HHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCC
Q 045988          163 DHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENES  242 (530)
Q Consensus       163 ~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (530)
                      .|||++ ||+||||||+|||++.                                                         
T Consensus       152 ~~lH~~-~ivH~dlkp~Nill~~---------------------------------------------------------  173 (304)
T cd05096         152 KYLSSL-NFVHRDLATRNCLVGE---------------------------------------------------------  173 (304)
T ss_pred             HHHHHC-CccccCcchhheEEcC---------------------------------------------------------
Confidence            999997 9999999999999954                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---
Q 045988          243 DSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---  319 (530)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---  319 (530)
                                                                                 ++.+||+|||++......   
T Consensus       174 -----------------------------------------------------------~~~~kl~DfG~~~~~~~~~~~  194 (304)
T cd05096         174 -----------------------------------------------------------NLTIKIADFGMSRNLYAGDYY  194 (304)
T ss_pred             -----------------------------------------------------------CccEEECCCccceecccCcee
Confidence                                                                       456999999998653221   


Q ss_pred             --cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh--CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcC
Q 045988          320 --FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT--GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFG  395 (530)
Q Consensus       320 --~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt--G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  395 (530)
                        .....++..|+|||++.+..++.++|||||||++|+|++  +..||...+      ....+..+...+.....     
T Consensus       195 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~-----  263 (304)
T cd05096         195 RIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELT------DEQVIENAGEFFRDQGR-----  263 (304)
T ss_pred             EecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCC------HHHHHHHHHHHhhhccc-----
Confidence              223345788999999998889999999999999999987  557775432      11112111111100000     


Q ss_pred             CCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          396 GRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                                   ......+...+..+.+||.+||..||.+|||+.+|.+
T Consensus       264 -----------------------------~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~  300 (304)
T cd05096         264 -----------------------------QVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHA  300 (304)
T ss_pred             -----------------------------cccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHH
Confidence                                         0000112345678999999999999999999999954

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=3.8e-40  Score=322.19  Aligned_cols=249  Identities=24%  Similarity=0.358  Sum_probs=204.8

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +|++.+.||.|+||.||+|.+..+++.||+|++.+..    .....+.+|+++++++      +||||+++++.+.    
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----   70 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQEL------NHPFLVNLWYSFQ----   70 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhC------CCCChHHHHHhhc----
Confidence            5899999999999999999999999999999887543    2346778899999998      7888999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .+...|+||||+ +++|..++...  ..+++..+..++.||+.||.|||++ ||+|+||||+||+++.            
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~-~i~h~dl~~~nil~~~------------  135 (258)
T cd05578          71 DEENMYLVVDLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSK-GIIHRDIKPDNILLDE------------  135 (258)
T ss_pred             CCCeEEEEEeCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeEEcC------------
Confidence            557899999999 89999988654  4589999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (258)
T cd05578         136 --------------------------------------------------------------------------------  135 (258)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                              ++.++|+|||.+......  .....|+..|+|||++.+..++.++|+|||||++|+
T Consensus       136 ------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~  191 (258)
T cd05578         136 ------------------------QGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYE  191 (258)
T ss_pred             ------------------------CCCEEEeecccccccCCCccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHH
Confidence                                    456899999998654332  334568889999999998889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||...+..       ....+......                                      ....++...+
T Consensus       192 l~~g~~p~~~~~~~-------~~~~~~~~~~~--------------------------------------~~~~~~~~~~  226 (258)
T cd05578         192 CLRGKRPYRGHSRT-------IRDQIRAKQET--------------------------------------ADVLYPATWS  226 (258)
T ss_pred             HHhCCCCCCCCCcc-------HHHHHHHHhcc--------------------------------------ccccCcccCc
Confidence            99999999644311       11111111100                                      1112333456


Q ss_pred             HHHHHHHhhccCcCCCCCcCH--HHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTA--AQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta--~elL~hp~f  465 (530)
                      .++.+||.+||..||.+||++  .|+++||||
T Consensus       227 ~~~~~~i~~~l~~~p~~R~~~~~~~l~~~~~~  258 (258)
T cd05578         227 TEAIDAINKLLERDPQKRLGDNLKDLKNHPYF  258 (258)
T ss_pred             HHHHHHHHHHccCChhHcCCccHHHHhcCCCC
Confidence            889999999999999999999  999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=8.6e-40  Score=321.33  Aligned_cols=252  Identities=25%  Similarity=0.331  Sum_probs=197.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.... .....+.+|+.+++++      .||||+++++.+.    .
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~------~h~~ii~~~~~~~----~   77 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKEC------KHCNIVAYFGSYL----S   77 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhc------CCCCeeeeeEEEE----e
Confidence            468999999999999999999999999999999887543 2344567899999988      7888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +...++||||+ +++|.+++..  ...+++..+..++.|++.||+|||++ ||+||||||+||+++.             
T Consensus        78 ~~~~~iv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nill~~-------------  141 (267)
T cd06646          78 REKLWICMEYCGGGSLQDIYHV--TGPLSELQIAYVCRETLQGLAYLHSK-GKMHRDIKGANILLTD-------------  141 (267)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEECC-------------
Confidence            47899999999 7899888863  34589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (267)
T cd06646         142 --------------------------------------------------------------------------------  141 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhc---CCCCCCcchhHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLL---GSKYSTPADLWSFACI  352 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~---~~~~~~~~DiWSlG~i  352 (530)
                                             .+.++|+|||++......   .....|++.|+|||.+.   ...++.++|||||||+
T Consensus       142 -----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~i  198 (267)
T cd06646         142 -----------------------NGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGIT  198 (267)
T ss_pred             -----------------------CCCEEECcCccceeecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHH
Confidence                                   456999999998654322   23456889999999985   3447889999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|..||.......      ....+.. ..                              .      .........
T Consensus       199 l~el~~g~~p~~~~~~~~------~~~~~~~-~~------------------------------~------~~~~~~~~~  235 (267)
T cd06646         199 AIELAELQPPMFDLHPMR------ALFLMSK-SN------------------------------F------QPPKLKDKT  235 (267)
T ss_pred             HHHHHhCCCCccccchhh------hheeeec-CC------------------------------C------CCCCCcccc
Confidence            999999999985322100      0000000 00                              0      000000112


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPW  464 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~  464 (530)
                      ..+..+.+||++||..||++|||++++|+|+|
T Consensus       236 ~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l~  267 (267)
T cd06646         236 KWSSTFHNFVKISLTKNPKKRPTAERLLTHLF  267 (267)
T ss_pred             ccCHHHHHHHHHHhhCChhhCcCHHHHhcCCC
Confidence            34578999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=1.7e-39  Score=321.77  Aligned_cols=249  Identities=24%  Similarity=0.402  Sum_probs=192.8

Q ss_pred             EeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEE
Q 045988           49 KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVC  124 (530)
Q Consensus        49 ~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~  124 (530)
                      .||+|+||.||+|.+..+++.||+|++.....    ......+|..+++.+.+.   .|++|+.+++.|.    ..+..+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~----~~~~~~   73 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG---DCPFIVCMTYAFH----TPDKLC   73 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhC---CCCcEeEEEEEEe----cCCeEE
Confidence            48999999999999999999999998865421    122334555555444322   7899999999998    446899


Q ss_pred             EEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccc
Q 045988          125 MVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLL  203 (530)
Q Consensus       125 lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~  203 (530)
                      +||||+ +++|..++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.                  
T Consensus        74 lv~e~~~~~~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~-~ivH~dikp~Nil~~~------------------  132 (279)
T cd05633          74 FILDLMNGGDLHYHLSQH--GVFSEKEMRFYATEIILGLEHMHNR-FVVYRDLKPANILLDE------------------  132 (279)
T ss_pred             EEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcCCCCCCHHHEEECC------------------
Confidence            999999 88998888643  3499999999999999999999997 9999999999999954                  


Q ss_pred             cccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccccc
Q 045988          204 TKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGIN  283 (530)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (530)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (279)
T cd05633         133 --------------------------------------------------------------------------------  132 (279)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhc-CCCCCCcchhHHHHHHHHHHHhCCC
Q 045988          284 KDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLL-GSKYSTPADLWSFACICFELATGDV  361 (530)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~-~~~~~~~~DiWSlG~il~elltG~~  361 (530)
                                        +..++|+|||++..... ......||..|+|||++. +..++.++||||+||++|+|++|..
T Consensus       133 ------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~  194 (279)
T cd05633         133 ------------------HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHS  194 (279)
T ss_pred             ------------------CCCEEEccCCcceeccccCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCC
Confidence                              45699999999864322 223457899999999987 4568999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHH
Q 045988          362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADF  441 (530)
Q Consensus       362 PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL  441 (530)
                      ||......    ....+..+.                                         ......++...+.++.+|
T Consensus       195 pf~~~~~~----~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~l  229 (279)
T cd05633         195 PFRQHKTK----DKHEIDRMT-----------------------------------------LTVNVELPDSFSPELKSL  229 (279)
T ss_pred             CcCCCCCc----CHHHHHHHh-----------------------------------------hcCCcCCccccCHHHHHH
Confidence            99643211    111111110                                         000112344567889999


Q ss_pred             HhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          442 LVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       442 l~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      |.+||..||.+|+     ++.|+++||||+.-
T Consensus       230 i~~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~  261 (279)
T cd05633         230 LEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGI  261 (279)
T ss_pred             HHHHhcCCHHHhcCCCCCCHHHHHhCccccCC
Confidence            9999999999999     69999999999863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=1.8e-39  Score=319.03  Aligned_cols=251  Identities=24%  Similarity=0.373  Sum_probs=198.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc------cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .+|++.+.||+|+||.||+|.+..++..||+|++....      .....+.+|+.+++.+      .||||+++++.+..
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~   75 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNL------QHERIVQYYGCLRD   75 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHc------CCCCeeeEEEEEEc
Confidence            36999999999999999999999999999999876432      1234577899999999      78889999998875


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                      .  .+..++++|||+ +++|.+++...  ..+++..+..++.||+.||+|||+. ||+||||||+||+++.         
T Consensus        76 ~--~~~~~~l~~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~LH~~-~i~H~~l~p~nil~~~---------  141 (266)
T cd06651          76 R--AEKTLTIFMEYMPGGSVKDQLKAY--GALTESVTRKYTRQILEGMSYLHSN-MIVHRDIKGANILRDS---------  141 (266)
T ss_pred             C--CCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEECC---------
Confidence            3  346889999999 78999988643  3488999999999999999999996 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (266)
T cd06651         142 --------------------------------------------------------------------------------  141 (266)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 +..++|+|||++.....      ......++..|+|||.+.+..++.++||||
T Consensus       142 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  194 (266)
T cd06651         142 ---------------------------AGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWS  194 (266)
T ss_pred             ---------------------------CCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHH
Confidence                                       45699999999864321      122345788999999999888999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||....         ....+.......                                     ...
T Consensus       195 lG~i~~el~~g~~pf~~~~---------~~~~~~~~~~~~-------------------------------------~~~  228 (266)
T cd06651         195 LGCTVVEMLTEKPPWAEYE---------AMAAIFKIATQP-------------------------------------TNP  228 (266)
T ss_pred             HHHHHHHHHHCCCCccccc---------hHHHHHHHhcCC-------------------------------------CCC
Confidence            9999999999999995321         112121111000                                     001


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      .++...++.+.+|| +||..+|.+||+++|+++||||+
T Consensus       229 ~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~hp~~~  265 (266)
T cd06651         229 QLPSHISEHARDFL-GCIFVEARHRPSAEELLRHPFAQ  265 (266)
T ss_pred             CCchhcCHHHHHHH-HHhcCChhhCcCHHHHhcCcccc
Confidence            22334567788898 57778999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-39  Score=321.62  Aligned_cols=251  Identities=27%  Similarity=0.417  Sum_probs=204.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|++.+.||.|+||.||+|.+..+++.||+|++....  .....+.+|+.+++.+      .|+||+++++.+.    .
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   70 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQC------RSPYITKYYGSFL----K   70 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHc------CCCCeeeeeEEEE----E
Confidence            47999999999999999999999999999999887543  2345677899999998      6888999999988    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +...|+|+||+ +++|.+++...   .+++..+..++.||+.||.|||++ +|+||||+|+||+++.             
T Consensus        71 ~~~~~~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~-~i~h~dl~p~ni~i~~-------------  133 (274)
T cd06609          71 GSKLWIIMEYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEE-GKIHRDIKAANILLSE-------------  133 (274)
T ss_pred             CCeEEEEEEeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEECC-------------
Confidence            47899999999 88999988643   589999999999999999999997 9999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (274)
T cd06609         134 --------------------------------------------------------------------------------  133 (274)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             ++.++|+|||.+......   .....+++.|+|||.+.+..++.++|||||||++|+
T Consensus       134 -----------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~  190 (274)
T cd06609         134 -----------------------EGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIE  190 (274)
T ss_pred             -----------------------CCCEEEcccccceeecccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHH
Confidence                                   456999999998654322   344578889999999998889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh-c
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK-D  434 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  434 (530)
                      |++|.+||....         ....+..+....+                                      ...... .
T Consensus       191 l~tg~~p~~~~~---------~~~~~~~~~~~~~--------------------------------------~~~~~~~~  223 (274)
T cd06609         191 LAKGEPPLSDLH---------PMRVLFLIPKNNP--------------------------------------PSLEGNKF  223 (274)
T ss_pred             HHhCCCCcccCc---------hHHHHHHhhhcCC--------------------------------------CCCccccc
Confidence            999999995332         1111111100000                                      001111 4


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +.++.+||.+||..||.+|||+.++++||||+...
T Consensus       224 ~~~~~~~l~~~l~~~p~~Rpt~~~il~~~~~~~~~  258 (274)
T cd06609         224 SKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKAK  258 (274)
T ss_pred             CHHHHHHHHHHhhCChhhCcCHHHHhhChhhcCCC
Confidence            67899999999999999999999999999998643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=1.1e-39  Score=321.05  Aligned_cols=248  Identities=23%  Similarity=0.348  Sum_probs=194.1

Q ss_pred             CCEEEEEEe--ccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKL--GWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~L--G~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|.+.+.+  |+|+||.||++.++.++..+|+|++.......    .|+.+...+.     +|+||+++++.|..    
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~----~e~~~~~~~~-----~h~~iv~~~~~~~~----   80 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA----IEPMVHQLMK-----DNPNFIKLYYSVTT----   80 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch----hhHHHHHHhh-----cCCCEEEEEEEEec----
Confidence            467777666  99999999999999999999999987643211    1333333232     68999999999984    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....|+||||+ +++|.+++....  .+++..+..++.||+.||.|||+. ||+||||||+||++..             
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nil~~~-------------  144 (267)
T PHA03390         81 LKGHVLIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHKH-NIIHNDIKLENVLYDR-------------  144 (267)
T ss_pred             CCeeEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEEeC-------------
Confidence            46899999999 899999987543  599999999999999999999997 9999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (267)
T PHA03390        145 --------------------------------------------------------------------------------  144 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhccc-ceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDL-KCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~-~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                             .. .++|+|||.+...... ....|+..|+|||++.+..++.++|||||||++|+|+
T Consensus       145 -----------------------~~~~~~l~dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~  200 (267)
T PHA03390        145 -----------------------AKDRIYLCDYGLCKIIGTP-SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELL  200 (267)
T ss_pred             -----------------------CCCeEEEecCccceecCCC-ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHH
Confidence                                   23 6899999998654332 2346899999999999888999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|.+||........     ....+....                                       ..........++.
T Consensus       201 ~g~~p~~~~~~~~~-----~~~~~~~~~---------------------------------------~~~~~~~~~~~~~  236 (267)
T PHA03390        201 TGKHPFKEDEDEEL-----DLESLLKRQ---------------------------------------QKKLPFIKNVSKN  236 (267)
T ss_pred             HCCCCCCCCCcchh-----hHHHHHHhh---------------------------------------cccCCcccccCHH
Confidence            99999963321110     011111000                                       0111222346788


Q ss_pred             HHHHHhhccCcCCCCCcC-HHHHhcCCCCC
Q 045988          438 MADFLVPILDFVPEKRPT-AAQCLTHPWIN  466 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpt-a~elL~hp~f~  466 (530)
                      +.+||.+||+.||.+||+ ++|+|+||||+
T Consensus       237 ~~~li~~~l~~~p~~R~~~~~~~l~h~~~~  266 (267)
T PHA03390        237 ANDFVQSMLKYNINYRLTNYNEIIKHPFLK  266 (267)
T ss_pred             HHHHHHHHhccChhhCCchHHHHhcCCccc
Confidence            999999999999999996 59999999997

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-39  Score=321.81  Aligned_cols=242  Identities=14%  Similarity=0.206  Sum_probs=193.3

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccccc----hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY----TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~----~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      ..||+|+++.||+|..  +|+.||||+++.....    .+.+.+|+.+|+++      .|||||++++++.+.......+
T Consensus        26 ~~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~nIv~~~g~~~~~~~~~~~~   97 (283)
T PHA02988         26 VLIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRI------DSNNILKIYGFIIDIVDDLPRL   97 (283)
T ss_pred             eEEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhc------CCCCEEEEeeeEEecccCCCce
Confidence            5789999999999975  7899999998765432    35567999999999      7888999999987632234689


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      ++||||+ +++|.+++...  ..+++.....++.|++.||.|||+..+++||||||+|||++.                 
T Consensus        98 ~lv~Ey~~~g~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~-----------------  158 (283)
T PHA02988         98 SLILEYCTRGYLREVLDKE--KDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTE-----------------  158 (283)
T ss_pred             EEEEEeCCCCcHHHHHhhC--CCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECC-----------------
Confidence            9999999 88999998743  358899999999999999999997448999999999999965                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (283)
T PHA02988        159 --------------------------------------------------------------------------------  158 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC--CCCCCcchhHHHHHHHHHHHhCC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG--SKYSTPADLWSFACICFELATGD  360 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~--~~~~~~~DiWSlG~il~elltG~  360 (530)
                                         ++.+||+|||++..........+||..|+|||++.+  ..|+.++|||||||++|+|++|.
T Consensus       159 -------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~  219 (283)
T PHA02988        159 -------------------NYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGK  219 (283)
T ss_pred             -------------------CCcEEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCC
Confidence                               467999999999765444455678999999999976  67999999999999999999999


Q ss_pred             CCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHH
Q 045988          361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMAD  440 (530)
Q Consensus       361 ~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  440 (530)
                      .||...+      ..+....+... +                                       ..+.++...+..+.+
T Consensus       220 ~Pf~~~~------~~~~~~~i~~~-~---------------------------------------~~~~~~~~~~~~l~~  253 (283)
T PHA02988        220 IPFENLT------TKEIYDLIINK-N---------------------------------------NSLKLPLDCPLEIKC  253 (283)
T ss_pred             CCCCCCC------HHHHHHHHHhc-C---------------------------------------CCCCCCCcCcHHHHH
Confidence            9996432      11111111100 0                                       011122345678999


Q ss_pred             HHhhccCcCCCCCcCHHHHhc
Q 045988          441 FLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       441 Ll~~mL~~dP~~Rpta~elL~  461 (530)
                      ||.+||+.||.+|||+.|+|.
T Consensus       254 li~~cl~~dp~~Rps~~ell~  274 (283)
T PHA02988        254 IVEACTSHDSIKRPNIKEILY  274 (283)
T ss_pred             HHHHHhcCCcccCcCHHHHHH
Confidence            999999999999999999986

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=5.8e-39  Score=318.44  Aligned_cols=280  Identities=32%  Similarity=0.490  Sum_probs=211.1

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC-C
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP-N  119 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~-~  119 (530)
                      |++.+.||+|+||.||+|.+..+++.||||+++...   .....+.+|+.+++++...   .|+||+++++++..... .
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~h~~i~~~~~~~~~~~~~~   77 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESF---EHPNIVRLLDVCHGPRTDR   77 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhcc---CCCCcceEEEEEeeccCCC
Confidence            789999999999999999999899999999987432   2234566788888888532   58999999999986431 2


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ....+++|||+.++|.+++.......+++..+..++.||+.||.|||++ ||+|+||||+||+++.              
T Consensus        78 ~~~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~-~i~h~~l~~~nili~~--------------  142 (287)
T cd07838          78 ELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSH-RIVHRDLKPQNILVTS--------------  142 (287)
T ss_pred             CceeEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCChhhEEEcc--------------
Confidence            2349999999988999988765444589999999999999999999997 9999999999999965              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (287)
T cd07838         143 --------------------------------------------------------------------------------  142 (287)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                            +..++|+|||.+.....  ......++..|+|||++.+..++.++|||||||++|+|+
T Consensus       143 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~  200 (287)
T cd07838         143 ----------------------DGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELF  200 (287)
T ss_pred             ----------------------CCCEEEeccCcceeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHH
Confidence                                  45699999999865432  223445788999999999988999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCC-cccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGR-YSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      +|.+||...+      ..+.+..+....+......+.... .....+....              .  ..........+.
T Consensus       201 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~  258 (287)
T cd07838         201 RRRPLFRGTS------EADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYT--------------P--RSFKSFVPEICE  258 (287)
T ss_pred             hCCCcccCCC------hHHHHHHHHHHcCCCChHhcCCCcccchhhccccc--------------c--cchhhhhhhhhH
Confidence            9999997543      445555555554433221111000 0000000000              0  000111224467


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+.+||.+||+.||.+||++.++|.||||
T Consensus       259 ~~~~li~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         259 EGLDLLKKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             HHHHHHHHHhccCCccCCCHHHHhcCcCC
Confidence            88999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-40  Score=339.70  Aligned_cols=247  Identities=28%  Similarity=0.421  Sum_probs=204.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ...|.+...+|.|+|+.|-.|.+..+++.+++|++.+..   ....+|+.++....     +||||+++++++.    ++
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~---~~~~~e~~~~~~~~-----~h~niv~~~~v~~----~~  388 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA---DDNQDEIPISLLVR-----DHPNIVKSHDVYE----DG  388 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc---cccccccchhhhhc-----CCCcceeecceec----CC
Confidence            578999999999999999999999999999999988762   23456888887775     8999999999999    66


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      .+.|+|||++ ++-|.+-+....   .....+..|+.||+.|+.|||++ ||||||+||+|||+...             
T Consensus       389 ~~~~~v~e~l~g~ell~ri~~~~---~~~~e~~~w~~~lv~Av~~LH~~-gvvhRDLkp~NIL~~~~-------------  451 (612)
T KOG0603|consen  389 KEIYLVMELLDGGELLRRIRSKP---EFCSEASQWAAELVSAVDYLHEQ-GVVHRDLKPGNILLDGS-------------  451 (612)
T ss_pred             ceeeeeehhccccHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHhc-CeeecCCChhheeecCC-------------
Confidence            8999999999 777666664332   23377888999999999999997 99999999999999410             


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       452 --------------------------------------------------------------------------------  451 (612)
T KOG0603|consen  452 --------------------------------------------------------------------------------  451 (612)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhC
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG  359 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG  359 (530)
                                            .++++|+|||.++.......+.+-|..|.|||++...+|+.++||||||++||+||+|
T Consensus       452 ----------------------~g~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G  509 (612)
T KOG0603|consen  452 ----------------------AGHLRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTG  509 (612)
T ss_pred             ----------------------CCcEEEEEechhhhCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhC
Confidence                                  5679999999998776665555678899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      +.||......         ..+...++..                                        .+...+|..++
T Consensus       510 ~tp~~~~P~~---------~ei~~~i~~~----------------------------------------~~s~~vS~~AK  540 (612)
T KOG0603|consen  510 RTLFAAHPAG---------IEIHTRIQMP----------------------------------------KFSECVSDEAK  540 (612)
T ss_pred             CCccccCCch---------HHHHHhhcCC----------------------------------------ccccccCHHHH
Confidence            9999754421         1222222211                                        22356789999


Q ss_pred             HHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          440 DFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       440 dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      +||++||++||.+|+++.+++.||||..
T Consensus       541 dLl~~LL~~dP~~Rl~~~~i~~h~w~~~  568 (612)
T KOG0603|consen  541 DLLQQLLQVDPALRLGADEIGAHPWFLS  568 (612)
T ss_pred             HHHHHhccCChhhCcChhhhccCcchhc
Confidence            9999999999999999999999999943

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=3.5e-39  Score=314.57  Aligned_cols=250  Identities=25%  Similarity=0.417  Sum_probs=203.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++.+.||+|+||.||+|.+..+++.||+|.+....   .....+.+|+++|+++      +||||+++++.+.    .
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~----~   70 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLL------SHPNIIEYYENFL----E   70 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhC------CCCchhheeeeEe----c
Confidence            5999999999999999999999999999999876542   2345678899999999      7888999999987    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +...++||||+ +++|.+++.......+++..+..++.|++.||+|||++ ||+||||||+||+++..            
T Consensus        71 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~-~i~h~dl~~~nil~~~~------------  137 (256)
T cd08220          71 DKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK-LILHRDLKTQNILLDKH------------  137 (256)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcCC------------
Confidence            57899999999 88999999765545589999999999999999999997 99999999999999531            


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (256)
T cd08220         138 --------------------------------------------------------------------------------  137 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                             ...++|+|||.+......  .....|+..|+|||.+.+..++.++|||||||++|+|
T Consensus       138 -----------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l  194 (256)
T cd08220         138 -----------------------KMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYEL  194 (256)
T ss_pred             -----------------------CCEEEEccCCCceecCCCccccccccCCcccCchhccCCCCCcccchHHHHHHHHHH
Confidence                                   245899999998754322  2335688999999999988899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||....      .......+..  +.                                       ....+...+.
T Consensus       195 ~~~~~~~~~~~------~~~~~~~~~~--~~---------------------------------------~~~~~~~~~~  227 (256)
T cd08220         195 ASLKRAFEAAN------LPALVLKIMS--GT---------------------------------------FAPISDRYSP  227 (256)
T ss_pred             HhCCCCcccCc------hHHHHHHHHh--cC---------------------------------------CCCCCCCcCH
Confidence            99999995432      1111111100  00                                       0012234567


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ++.+||.+||..||.+|||+.|+|+||||
T Consensus       228 ~l~~li~~~l~~~p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         228 DLRQLILSMLNLDPSKRPQLSQIMAQPIC  256 (256)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHhhCCCC
Confidence            89999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=2.6e-39  Score=323.82  Aligned_cols=283  Identities=28%  Similarity=0.444  Sum_probs=213.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||||+++...   .....+.+|+.+++++      .||||+++++++....
T Consensus         6 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l------~h~~i~~~~~~~~~~~   79 (302)
T cd07864           6 VDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQL------NHRNIVNLKEIVTDKQ   79 (302)
T ss_pred             hhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhC------CCCCeeeeeheecCcc
Confidence            578999999999999999999999999999999886532   2334667899999999      7888999999887532


Q ss_pred             ------CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          118 ------PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       118 ------~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                            .....+|+||||++++|..++... ...+++..+..++.||+.||+|||++ ||+||||||+||+++.      
T Consensus        80 ~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~-~i~H~dl~p~nili~~------  151 (302)
T cd07864          80 DALDFKKDKGAFYLVFEYMDHDLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCHKK-NFLHRDIKCSNILLNN------  151 (302)
T ss_pred             hhhhccccCCcEEEEEcccCccHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEECC------
Confidence                  012389999999987888887643 33589999999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (302)
T cd07864         152 --------------------------------------------------------------------------------  151 (302)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCC-CCCCcchh
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGS-KYSTPADL  346 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~-~~~~~~Di  346 (530)
                                                    ...++|+|||.+......    .....++..|+|||++.+. .++.++||
T Consensus       152 ------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di  201 (302)
T cd07864         152 ------------------------------KGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDV  201 (302)
T ss_pred             ------------------------------CCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHH
Confidence                                          457999999998654321    2233567889999998754 47899999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|++||....      ....+..+....+..+...+....... .+....   ....     ...... 
T Consensus       202 ~slG~~~~el~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~-----~~~~~~-  265 (302)
T cd07864         202 WSCGCILGELFTKKPIFQANQ------ELAQLELISRLCGSPCPAVWPDVIKLP-YFNTMK---PKKQ-----YRRRLR-  265 (302)
T ss_pred             HHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCChhhcccccccc-cccccc---cccc-----cccchh-
Confidence            999999999999999996433      566777777777766554332111100 000000   0000     000000 


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                        ......+..+.+||.+||..||.+||++.++|.||||
T Consensus       266 --~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         266 --EEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             --hhcCCCCHHHHHHHHHHccCChhhCCCHHHHhcCCCC
Confidence              0111346789999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=4.2e-39  Score=314.29  Aligned_cols=249  Identities=26%  Similarity=0.392  Sum_probs=204.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++.+.||.|+||.||.+++..+++.+++|.+...   ......+.+|+.+++++      +|+||++++++|.    .
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~----~   70 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLL------QHPNIIAYYNHFM----D   70 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhC------CCCCeeEEEeEEe----c
Confidence            699999999999999999999999999999986643   23345678899999998      7888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....++||||+ +++|.+++.......+++..+..++.||+.||.|||+. ||+||||||+||+++.             
T Consensus        71 ~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~dl~p~ni~~~~-------------  136 (256)
T cd08221          71 DNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA-GILHRDIKTLNIFLTK-------------  136 (256)
T ss_pred             CCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCChHhEEEeC-------------
Confidence            57899999999 88999998765445589999999999999999999996 9999999999999965             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (256)
T cd08221         137 --------------------------------------------------------------------------------  136 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             +..++|+|||.+......   .....|++.|+|||++.+..++.++|||||||++|+
T Consensus       137 -----------------------~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~  193 (256)
T cd08221         137 -----------------------AGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYE  193 (256)
T ss_pred             -----------------------CCCEEECcCcceEEcccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHH
Confidence                                   456999999998654322   244578999999999998889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....      .......+.  .+..+                                       ......+
T Consensus       194 l~~g~~~~~~~~------~~~~~~~~~--~~~~~---------------------------------------~~~~~~~  226 (256)
T cd08221         194 LLTLKRTFDATN------PLNLVVKIV--QGNYT---------------------------------------PVVSVYS  226 (256)
T ss_pred             HHHCCCCCCCCC------HHHHHHHHH--cCCCC---------------------------------------CCccccC
Confidence            999999996432      111121111  01000                                       0112346


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .++.+||.+||..||.+||++.++|+|||+
T Consensus       227 ~~~~~~i~~~l~~~p~~R~s~~~ll~~~~l  256 (256)
T cd08221         227 SELISLVHSLLQQDPEKRPTADEVLDQPLL  256 (256)
T ss_pred             HHHHHHHHHHcccCcccCCCHHHHhhCcCC
Confidence            789999999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-39  Score=321.53  Aligned_cols=276  Identities=35%  Similarity=0.548  Sum_probs=213.2

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      |.+.+.||+|++|.||+|.+..+++.+|+|.+.....   ....+.+|+.+++++      .|+||+++++++.    .+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~~   70 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKEL------NHPNIIKLLDVFR----HK   70 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHh------cCCCcchHHHhhc----cC
Confidence            6788999999999999999999999999998765432   345678899999999      6888999999988    44


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ...++||||+.++|..++.... ..+++..+..++.||+.||.|||++ ||+|+||||+||+++.               
T Consensus        71 ~~~~~v~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~p~nili~~---------------  133 (283)
T cd05118          71 GDLYLVFEFMDTDLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSH-GILHRDLKPENLLINT---------------  133 (283)
T ss_pred             CCEEEEEeccCCCHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHC-CeeecCcCHHHEEECC---------------
Confidence            7899999999889998887543 4589999999999999999999997 9999999999999954               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (283)
T cd05118         134 --------------------------------------------------------------------------------  133 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFEL  356 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~el  356 (530)
                                           +..++|+|||.+......   .....++..|+|||.+.+. .++.++|||||||++|+|
T Consensus       134 ---------------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l  192 (283)
T cd05118         134 ---------------------EGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAEL  192 (283)
T ss_pred             ---------------------CCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHH
Confidence                                 456999999998654332   2345678899999999876 689999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||...+      ..+.+..+...++......+...........          ..+ +. .............+.
T Consensus       193 ~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~-~~~~~~~~~~~~~~~  254 (283)
T cd05118         193 LSRRPLFPGKS------EIDQLFKIFRTLGTPDPEVWPKFTSLARNYK----------FSF-PK-KAGMPLPKLFPNASP  254 (283)
T ss_pred             HhCCCCCCCCC------HHHHHHHHHHHcCCCchHhcccchhhhhhhh----------hhh-cc-ccccCHHHhhhhhCH
Confidence            99999996544      4556666666666654443322111000000          000 00 000000011234578


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+.+||.+||.+||.+||++.++|.||||
T Consensus       255 ~~~~~i~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         255 QALDLLSQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             HHHHHHHHHhccCcccCcCHHHHhhCCCC
Confidence            89999999999999999999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=1.6e-39  Score=321.43  Aligned_cols=249  Identities=27%  Similarity=0.402  Sum_probs=198.9

Q ss_pred             eccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           50 LGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        50 LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ||+|+||+||+|.+..+|+.||+|++....    .....+.+|+.+|+++      +||||+++++.|.    .....|+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~~~~~~l   70 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKV------SSRFIVSLAYAFE----TKDDLCL   70 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhC------CCCCEeeeeeEEe----cCCeEEE
Confidence            799999999999999999999999886532    2234557899999998      6888999999998    4478999


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccc
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLT  204 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~  204 (530)
                      ||||+ +++|.+++.......+++..+..++.||+.||.|||++ ||+||||||+||+++.                   
T Consensus        71 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~-~i~H~di~p~Nil~~~-------------------  130 (277)
T cd05577          71 VMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR-RIVYRDLKPENVLLDD-------------------  130 (277)
T ss_pred             EEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEECC-------------------
Confidence            99999 88999988765545699999999999999999999997 9999999999999954                   


Q ss_pred             ccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 045988          205 KKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK  284 (530)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (530)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (277)
T cd05577         131 --------------------------------------------------------------------------------  130 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCC
Q 045988          285 DCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL  362 (530)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~P  362 (530)
                                       +..++|+|||.+.....  ......++..|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       131 -----------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p  193 (277)
T cd05577         131 -----------------HGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSP  193 (277)
T ss_pred             -----------------CCCEEEccCcchhhhccCCccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCC
Confidence                             45699999999865332  22345678899999999888899999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHH
Q 045988          363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFL  442 (530)
Q Consensus       363 F~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl  442 (530)
                      |.......   ....+   ...                                      .......++...++.+.+||
T Consensus       194 ~~~~~~~~---~~~~~---~~~--------------------------------------~~~~~~~~~~~~~~~~~~li  229 (277)
T cd05577         194 FRQRKEKV---EKEEL---KRR--------------------------------------TLEMAVEYPDKFSPEAKDLC  229 (277)
T ss_pred             CCCCcccc---cHHHH---Hhc--------------------------------------cccccccCCccCCHHHHHHH
Confidence            96433110   01111   000                                      00011123344578899999


Q ss_pred             hhccCcCCCCCc-----CHHHHhcCCCCCCCC
Q 045988          443 VPILDFVPEKRP-----TAAQCLTHPWINVGP  469 (530)
Q Consensus       443 ~~mL~~dP~~Rp-----ta~elL~hp~f~~~~  469 (530)
                      .+||+.||.+||     ++.+++.||||+...
T Consensus       230 ~~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~~  261 (277)
T cd05577         230 EALLQKDPEKRLGCRGGSADEVREHPLFKDLN  261 (277)
T ss_pred             HHHccCChhHccCCCcccHHHHHhChhhhcCC
Confidence            999999999999     999999999997543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=2e-39  Score=325.57  Aligned_cols=254  Identities=26%  Similarity=0.368  Sum_probs=201.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.+.||+|+||.||+|.+..+++.||||.+....    .....+.+|+++++.+      .||||+++++.+.   
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~---   71 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFA------ENPFVVSMFCSFE---   71 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhC------CCCCeeeeEEEEe---
Confidence            36999999999999999999999999999999877543    2234567899999888      7888999999988   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .+.++++||||+ +++|.+++...  ..+++..+..++.|++.||.|||++ ||+||||||+|||++.           
T Consensus        72 -~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~NIll~~-----------  136 (305)
T cd05609          72 -TKRHLCMVMEYVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLHNY-GIVHRDLKPDNLLITS-----------  136 (305)
T ss_pred             -cCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCchHHEEECC-----------
Confidence             457899999999 88999998643  4589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (305)
T cd05609         137 --------------------------------------------------------------------------------  136 (305)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------------------ccCCCCCCCCccCChhhcCC
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------------------QFTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------------------~~~~~~gt~~y~aPE~l~~~  338 (530)
                                               .+.++|+|||++.....                  ......++..|+|||.+.+.
T Consensus       137 -------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  191 (305)
T cd05609         137 -------------------------MGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQ  191 (305)
T ss_pred             -------------------------CCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCC
Confidence                                     45689999998753110                  01123578899999999888


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccC
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (530)
                      .++.++|||||||++|+|++|..||.+..      ....+..+.......                              
T Consensus       192 ~~~~~~Di~slG~vl~el~~g~~pf~~~~------~~~~~~~~~~~~~~~------------------------------  235 (305)
T cd05609         192 GYGKPVDWWAMGIILYEFLVGCVPFFGDT------PEELFGQVISDDIEW------------------------------  235 (305)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhcccCC------------------------------
Confidence            89999999999999999999999996432      111111111000000                              


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcC---HHHHhcCCCCCCCC
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPT---AAQCLTHPWINVGP  469 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpt---a~elL~hp~f~~~~  469 (530)
                               .......+.++.+||.+||+.||.+||+   +.++|+||||....
T Consensus       236 ---------~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~~~~  280 (305)
T cd05609         236 ---------PEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLGLD  280 (305)
T ss_pred             ---------CCccccCCHHHHHHHHHHhccChhhccCccCHHHHHhCccccCCC
Confidence                     0001134678899999999999999998   79999999997643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.2e-39  Score=323.49  Aligned_cols=265  Identities=25%  Similarity=0.341  Sum_probs=206.4

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ++.++|++++.||+|+||+||+|.+..+++.||+|++....  .....+.+|+++++.+      .||||+++++.+.. 
T Consensus         2 l~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~-   74 (284)
T cd06620           2 LRNEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHEC------RSPYIVSFYGAFLN-   74 (284)
T ss_pred             ccHHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHc------CCCCcceEeeeEec-
Confidence            34578999999999999999999999999999999876542  2346778899999998      78889999999984 


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                         ....++||||+ +++|..++..  ...+++..+..++.|++.||.|||+..+|+||||||+||+++.          
T Consensus        75 ---~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~----------  139 (284)
T cd06620          75 ---ENNICMCMEFMDCGSLDRIYKK--GGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNS----------  139 (284)
T ss_pred             ---CCEEEEEEecCCCCCHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECC----------
Confidence               47899999999 7888888764  3358999999999999999999997448999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (284)
T cd06620         140 --------------------------------------------------------------------------------  139 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                                +..++|+|||++.... ......+|+..|+|||++.+..++.++|||||||++|
T Consensus       140 --------------------------~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~  193 (284)
T cd06620         140 --------------------------RGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISII  193 (284)
T ss_pred             --------------------------CCcEEEccCCcccchhhhccCccccCcccCCHHHHccCCCCccchHHHHHHHHH
Confidence                                      4568999999885432 2223457899999999998888999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCC--ChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC-
Q 045988          355 ELATGDVLFDPHSGDNYDR--DEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS-  431 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~--~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  431 (530)
                      +|++|..||..........  .......+.......                                      ...++ 
T Consensus       194 ~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~  235 (284)
T cd06620         194 ELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP--------------------------------------PPRLPS  235 (284)
T ss_pred             HHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhcc--------------------------------------CCCCCc
Confidence            9999999997544221100  000001111110000                                      00011 


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ...+..+.+||.+||..||.+|||+.|+++||||....
T Consensus       236 ~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~~~  273 (284)
T cd06620         236 SDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQAL  273 (284)
T ss_pred             hhcCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccc
Confidence            12456789999999999999999999999999997644

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=9.9e-40  Score=320.28  Aligned_cols=256  Identities=27%  Similarity=0.429  Sum_probs=205.3

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+....  .....+.+|+++++++      .||||+++++.+.    .
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~----~   70 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKC------NSPYIVGFYGAFY----N   70 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHC------CCCchhhhheeee----c
Confidence            46889999999999999999999999999999877653  3345678899999988      6888999999988    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR-ELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~-~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....++||||+ +++|.+++.... ..+++..+..++.||+.||+|||+ . ||+||||||+||+++.            
T Consensus        71 ~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~-~i~H~dl~~~ni~~~~------------  136 (265)
T cd06605          71 NGDISICMEYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKH-KIIHRDVKPSNILVNS------------  136 (265)
T ss_pred             CCEEEEEEEecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCC-CeecCCCCHHHEEECC------------
Confidence            47899999999 689999987543 458999999999999999999999 7 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (265)
T cd06605         137 --------------------------------------------------------------------------------  136 (265)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                              .+.++|+|||.+...... .....++..|+|||.+.+..++.++|||||||++|+|
T Consensus       137 ------------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l  192 (265)
T cd06605         137 ------------------------RGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIEL  192 (265)
T ss_pred             ------------------------CCCEEEeecccchhhHHHHhhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHH
Confidence                                    456999999998654322 1226788999999999998899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh-cH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK-DA  435 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  435 (530)
                      ++|..||......    .......+.......+                                      ...+.. .+
T Consensus       193 ~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~  230 (265)
T cd06605         193 ATGRFPYPPENDP----PDGIFELLQYIVNEPP--------------------------------------PRLPSGKFS  230 (265)
T ss_pred             HhCCCCCCccccc----cccHHHHHHHHhcCCC--------------------------------------CCCChhhcC
Confidence            9999999643210    0111111111111110                                      011112 56


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      .++.+||.+||..||.+|||+.+++.||||+.
T Consensus       231 ~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~~~  262 (265)
T cd06605         231 PDFQDFVNLCLIKDPRERPSYKELLEHPFIKK  262 (265)
T ss_pred             HHHHHHHHHHcCCCchhCcCHHHHhhCchhhc
Confidence            78999999999999999999999999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.3e-40  Score=338.83  Aligned_cols=254  Identities=24%  Similarity=0.404  Sum_probs=209.6

Q ss_pred             CCCE-EEEEEeccccceEEEEEEeCCCCeEEEE---EEec--ccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           41 NGRY-VVQSKLGWGHFSTVWLAWDTQTSHYVAL---KVQK--SAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        41 ~~~y-~i~~~LG~G~fg~Vy~a~~~~~~~~vAi---K~~~--~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      .+|| +...+||+|+|-+||+|.|..+|..||-   |+-+  +.....+++..|+.+|+.|      +|||||++|++|.
T Consensus        38 ~gRy~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL------~H~NIirfy~SW~  111 (632)
T KOG0584|consen   38 TGRYLKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSL------KHPNIIRFYDSWV  111 (632)
T ss_pred             CCceeehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccC------CCCceeeeeehee
Confidence            4566 4568899999999999999999988873   4322  3344458899999999999      7888999999999


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh-CCceeccCCCCcEEEeeccCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRE-LSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~-~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      +.  ....+.+|+|++ .|+|..|++..+  .++...++.|++||+.||.|||++ ..|||||||.+||||...      
T Consensus       112 d~--~n~~in~iTEL~TSGtLr~Y~kk~~--~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~------  181 (632)
T KOG0584|consen  112 DT--DNKTINFITELFTSGTLREYRKKHR--RVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGN------  181 (632)
T ss_pred             cC--CCceeeeeeecccCCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCC------
Confidence            76  457899999999 999999998544  499999999999999999999975 359999999999999552      


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (632)
T KOG0584|consen  182 --------------------------------------------------------------------------------  181 (632)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc-CCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-TNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                                   .+.|||+|+|+|......+ ...+|||.|||||++. ..|+..+||||||.
T Consensus       182 -----------------------------~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGM  231 (632)
T KOG0584|consen  182 -----------------------------LGEVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGM  231 (632)
T ss_pred             -----------------------------cCceeecchhHHHHhhccccceeccCccccChHHHh-hhcchhhhhhhhhH
Confidence                                         4789999999998876654 4468999999999997 57999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHH--hCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMEL--LGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~--~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      .+.||+|+.+||.-         -...++|++.  -|..|..                                      
T Consensus       232 CmLEMvT~eYPYsE---------C~n~AQIYKKV~SGiKP~s--------------------------------------  264 (632)
T KOG0584|consen  232 CMLEMVTSEYPYSE---------CTNPAQIYKKVTSGIKPAA--------------------------------------  264 (632)
T ss_pred             HHHHHHhccCChhh---------hCCHHHHHHHHHcCCCHHH--------------------------------------
Confidence            99999999999963         3344555442  2222222                                      


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +..-..+++++||.+||.. ...|+|+.|+|.||||...
T Consensus       265 l~kV~dPevr~fIekCl~~-~~~R~sa~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  265 LSKVKDPEVREFIEKCLAT-KSERLSAKELLKDPFFDED  302 (632)
T ss_pred             hhccCCHHHHHHHHHHhcC-chhccCHHHHhhChhhccc
Confidence            1122357899999999999 9999999999999999986

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=3.2e-39  Score=319.90  Aligned_cols=278  Identities=32%  Similarity=0.524  Sum_probs=213.0

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      |.+.+.||+|+||+||+|....+++.||||.+.....  ......+|+..++++.     .|+||+++++++..    +.
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~~~~~----~~   71 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLN-----EHPNIVKLKEVFRE----ND   71 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhcc-----CCCCchhHHHHhhc----CC
Confidence            6889999999999999999998999999998765432  1223456888888872     38899999999984    57


Q ss_pred             EEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          122 HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       122 ~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      ..|+||||++++|.+++.......+++..+..++.||+.||.|||++ ||+|+||||+||+++.                
T Consensus        72 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~-~i~H~dl~~~ni~i~~----------------  134 (283)
T cd07830          72 ELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH-GFFHRDLKPENLLVSG----------------  134 (283)
T ss_pred             cEEEEEecCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhEEEcC----------------
Confidence            89999999999999988765434689999999999999999999997 9999999999999965                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (283)
T cd07830         135 --------------------------------------------------------------------------------  134 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHHHHHh
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELAT  358 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~ellt  358 (530)
                                          .+.++|+|||.+.....  ......++..|+|||++.+ ..++.++|+|||||++|+|++
T Consensus       135 --------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~  194 (283)
T cd07830         135 --------------------PEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYT  194 (283)
T ss_pred             --------------------CCCEEEeecccceeccCCCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHh
Confidence                                46799999999975432  2345678999999998864 457899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |.+||...+      ..+.+..+...++.++...+.........+.      ..  ..... ...+.   ......+.++
T Consensus       195 g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~-~~~~~---~~~~~~~~~~  256 (283)
T cd07830         195 LRPLFPGSS------EIDQLYKICSVLGTPTKQDWPEGYKLASKLG------FR--FPQFA-PTSLH---QLIPNASPEA  256 (283)
T ss_pred             CCCccCCCC------hHHHHHHHHHhcCCCChhhhhhHhhhhcccc------cc--ccccc-cccHH---HHcccCCHHH
Confidence            999997554      5566777777777776554322211100000      00  00000 00000   1111236789


Q ss_pred             HHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          439 ADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+||++||+.||.+|||+.|++.||||
T Consensus       257 ~~li~~cl~~~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         257 IDLIKDMLRWDPKKRPTASQALQHPYF  283 (283)
T ss_pred             HHHHHHhcccCcccCCCHHHHhhCCCC
Confidence            999999999999999999999999998

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.6e-39  Score=314.21  Aligned_cols=253  Identities=28%  Similarity=0.376  Sum_probs=202.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|++.+.||.|+||.||+|.+..+++.+|+|++..... ....+.+|+.+++++      +||||+++++.+.    .
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~----~   71 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKEC------RHPNIVAYFGSYL----R   71 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhC------CCCChhceEEEEE----e
Confidence            3689999999999999999999999999999998876432 356788899999999      7888999999987    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +..+|++|||+ +++|.+++... ...+++..+..++.|++.||+|||++ ||+|+||||+||+++.             
T Consensus        72 ~~~~~l~~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~~-~i~h~dl~p~ni~i~~-------------  136 (262)
T cd06613          72 RDKLWIVMEYCGGGSLQDIYQVT-RGPLSELQIAYVCRETLKGLAYLHET-GKIHRDIKGANILLTE-------------  136 (262)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhC-CceecCCChhhEEECC-------------
Confidence            57899999999 77888887643 24589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (262)
T cd06613         137 --------------------------------------------------------------------------------  136 (262)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC---CCCCcchhHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS---KYSTPADLWSFACI  352 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~---~~~~~~DiWSlG~i  352 (530)
                                             ++.++|+|||.+.....   ......++..|+|||++.+.   .++.++|||||||+
T Consensus       137 -----------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~  193 (262)
T cd06613         137 -----------------------DGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGIT  193 (262)
T ss_pred             -----------------------CCCEEECccccchhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHH
Confidence                                   45689999999865432   23445788899999999876   78999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|.+||.....      ...... ....+..+.                                    ......
T Consensus       194 l~~~~tg~~p~~~~~~------~~~~~~-~~~~~~~~~------------------------------------~~~~~~  230 (262)
T cd06613         194 AIELAELQPPMFDLHP------MRALFL-ISKSNFPPP------------------------------------KLKDKE  230 (262)
T ss_pred             HHHHHhCCCCCCCCCH------HHHHHH-HHhccCCCc------------------------------------cccchh
Confidence            9999999999964321      111111 100000000                                    001122


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPW  464 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~  464 (530)
                      ..+.++.+||.+||..||..|||+.+++.|||
T Consensus       231 ~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~  262 (262)
T cd06613         231 KWSPVFHDFIKKCLTKDPKKRPTATKLLQHPF  262 (262)
T ss_pred             hhhHHHHHHHHHHcCCChhhCCCHHHHhcCCC
Confidence            34577999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=1.1e-39  Score=324.25  Aligned_cols=259  Identities=24%  Similarity=0.332  Sum_probs=200.4

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|...++||+|+||.||++.+..+++.||||.+....  .....+.+|+.++.++.     .|+||+++++++..    
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~iv~~~~~~~~----   74 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSS-----DCPYIVKFYGALFR----   74 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhc-----CCCCEeeeeeEEec----
Confidence            46778889999999999999999999999999877543  23456778999988883     48899999999874    


Q ss_pred             CcEEEEEEeccCcCHHHHHHh---hccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKY---ADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~---~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      ....+++|||++.++.++...   .....+++..+..++.|++.||+|||++.||+||||||+|||++.           
T Consensus        75 ~~~~~~~~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~-----------  143 (288)
T cd06616          75 EGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDR-----------  143 (288)
T ss_pred             CCcEEEEEecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEcc-----------
Confidence            467899999997776665432   223458999999999999999999997459999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (288)
T cd06616         144 --------------------------------------------------------------------------------  143 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCC---CCCCcchhHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGS---KYSTPADLWSFAC  351 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~---~~~~~~DiWSlG~  351 (530)
                                               ...++|+|||++......  .....|++.|+|||++.+.   .++.++|||||||
T Consensus       144 -------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~  198 (288)
T cd06616         144 -------------------------NGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGI  198 (288)
T ss_pred             -------------------------CCcEEEeecchhHHhccCCccccccCccCccCHHHhccccccCCcchhhhhHHHH
Confidence                                     356999999998653322  2344688999999999876   6899999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|.+||....        .....+.......+...                                  .....
T Consensus       199 il~el~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~----------------------------------~~~~~  236 (288)
T cd06616         199 TLYEVATGKFPYPKWN--------SVFDQLTQVVKGDPPIL----------------------------------SNSEE  236 (288)
T ss_pred             HHHHHHhCCCCchhcc--------hHHHHHhhhcCCCCCcC----------------------------------CCcCC
Confidence            9999999999995321        11111211111111000                                  00111


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      ...+..+.+||.+||+.||.+|||+.++++||||..
T Consensus       237 ~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  272 (288)
T cd06616         237 REFSPSFVNFINLCLIKDESKRPKYKELLEHPFIKD  272 (288)
T ss_pred             CccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhc
Confidence            235678999999999999999999999999999975

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=6.3e-39  Score=317.99  Aligned_cols=279  Identities=30%  Similarity=0.455  Sum_probs=212.7

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      |.+.++||+|+||.||+|.+..+++.||+|++....   .....+.+|+.+++++      .|+||+++++++...  ..
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~--~~   72 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKL------RHPNIVRLKEIVTSK--GK   72 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhc------cCCCeeeheeeEecC--CC
Confidence            788999999999999999999999999999987652   3345677899999999      688899999998843  13


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ...++||||++++|.+++.... ..+++..+..++.||+.||+|||++ |++|+||||+|||++.               
T Consensus        73 ~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~-~~~h~dl~p~nil~~~---------------  135 (287)
T cd07840          73 GSIYMVFEYMDHDLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHSN-GILHRDIKGSNILINN---------------  135 (287)
T ss_pred             CcEEEEeccccccHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCcHHHeEEcC---------------
Confidence            7899999999889998886432 3589999999999999999999997 9999999999999955               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (287)
T cd07840         136 --------------------------------------------------------------------------------  135 (287)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFE  355 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~e  355 (530)
                                           ++.++|+|||.+......    .....++..|+|||.+.+ ..++.++|||||||++|+
T Consensus       136 ---------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~e  194 (287)
T cd07840         136 ---------------------DGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAE  194 (287)
T ss_pred             ---------------------CCCEEEccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHH
Confidence                                 467999999999754332    344567889999998775 357899999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....      ....+..+....+.++...+...... .++.. .     ..  ...........  +....+
T Consensus       195 l~t~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-----~~--~~~~~~~~~~~--~~~~~~  257 (287)
T cd07840         195 LFLGKPIFQGST------ELEQLEKIFELCGSPTDENWPGVSKL-PWFEN-L-----KP--KKPYKRRLREF--FKHLID  257 (287)
T ss_pred             HHhCCCCCCCCC------hHHHHHHHHHHhCCCchhhccccccc-hhhhh-c-----cc--cccchhHHHHH--hcccCC
Confidence            999999996443      44556666666666554433211100 00000 0     00  00001111111  111236


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ..+.++|.+||.+||.+||++.+++.||||
T Consensus       258 ~~~~~~i~~~l~~~P~~Rp~~~~~l~~~~~  287 (287)
T cd07840         258 PSALDLLDKLLTLDPKKRISADQALQHEYF  287 (287)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHhhCcCC
Confidence            789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=8.5e-40  Score=326.19  Aligned_cols=255  Identities=25%  Similarity=0.402  Sum_probs=202.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      +.|.....||+|+||.||++.+..++..||||.+.... ...+.+.+|+.+++.+      .|+||+++++.+.    .+
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~ii~~~~~~~----~~   91 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDY------HHENVVDMYNSYL----VG   91 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhC------CCCcHHHHHHhee----cC
Confidence            55677788999999999999999999999999876532 3345678899999988      7888999999988    45


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      .+.|+||||+ +++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+||+++.              
T Consensus        92 ~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~Nill~~--------------  153 (292)
T cd06658          92 DELWVVMEFLEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYLHNQ-GVIHRDIKSDSILLTS--------------  153 (292)
T ss_pred             CeEEEEEeCCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEEcC--------------
Confidence            7899999999 7788887743   3489999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (292)
T cd06658         154 --------------------------------------------------------------------------------  153 (292)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            +..++|+|||++.....   ......|+..|+|||++.+..++.++|||||||++|+|
T Consensus       154 ----------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el  211 (292)
T cd06658         154 ----------------------DGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEM  211 (292)
T ss_pred             ----------------------CCCEEEccCcchhhcccccccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHH
Confidence                                  45699999999864322   12345689999999999888899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||....      ....+..+...   .+.                                    ........+.
T Consensus       212 ~~g~~p~~~~~------~~~~~~~~~~~---~~~------------------------------------~~~~~~~~~~  246 (292)
T cd06658         212 IDGEPPYFNEP------PLQAMRRIRDN---LPP------------------------------------RVKDSHKVSS  246 (292)
T ss_pred             HhCCCCCCCCC------HHHHHHHHHhc---CCC------------------------------------ccccccccCH
Confidence            99999996322      11111111111   000                                    0001123456


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      .+.+||.+||..||.+|||+.++|+||||.....+
T Consensus       247 ~~~~li~~~l~~~P~~Rpt~~~il~~~~~~~~~~~  281 (292)
T cd06658         247 VLRGFLDLMLVREPSQRATAQELLQHPFLKLAGPP  281 (292)
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhhChhhhccCCc
Confidence            78899999999999999999999999999976553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=5.4e-39  Score=314.32  Aligned_cols=251  Identities=25%  Similarity=0.416  Sum_probs=203.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++.+.||.|+||.||+|.+..+++.||+|++....   ...+.+..|+.+++++      .|+||+++++.+...  .
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~--~   72 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILREL------KHPNIVRYYDRIIDR--S   72 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhc------CCCccceeeeeeecC--C
Confidence            5899999999999999999999999999999886432   2345677899999999      788899999987643  4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHH-----hhCCceeccCCCCcEEEeeccCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLH-----RELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH-----~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +...+++|||+ +++|.+++....  ...+++..+..++.||+.||+|||     +. +|+|+||||+||+++.      
T Consensus        73 ~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~-~i~h~dl~p~nili~~------  145 (265)
T cd08217          73 NQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGN-TVLHRDLKPANIFLDA------  145 (265)
T ss_pred             CCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccC-cceecCCCHHHEEEec------
Confidence            46789999999 889999986542  345899999999999999999999     86 9999999999999955      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (265)
T cd08217         146 --------------------------------------------------------------------------------  145 (265)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                    ++.++|+|||++......   .....+++.|+|||++.+..++.++|+||
T Consensus       146 ------------------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~s  195 (265)
T cd08217         146 ------------------------------NNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWS  195 (265)
T ss_pred             ------------------------------CCCEEEecccccccccCCcccccccccCCCccChhhhcCCCCCchhHHHH
Confidence                                          467999999998764322   23457899999999999888999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||....       ...+...... +.                                       ..
T Consensus       196 lG~il~~l~~g~~p~~~~~-------~~~~~~~~~~-~~---------------------------------------~~  228 (265)
T cd08217         196 LGCLIYELCALSPPFTARN-------QLQLASKIKE-GK---------------------------------------FR  228 (265)
T ss_pred             HHHHHHHHHHCCCcccCcC-------HHHHHHHHhc-CC---------------------------------------CC
Confidence            9999999999999996432       1111111000 00                                       00


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .++...+..+.+||.+||..+|.+||++.++|+|||+
T Consensus       229 ~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~~~~  265 (265)
T cd08217         229 RIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQLPLI  265 (265)
T ss_pred             CCccccCHHHHHHHHHHccCCcccCCCHHHHhhCCCC
Confidence            1233456789999999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=4.1e-39  Score=315.98  Aligned_cols=247  Identities=21%  Similarity=0.308  Sum_probs=200.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ...|.+.++||+|+||.||+|.+..+++.||+|++.........+.+|+++++++      .|+||+++++++.    ..
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~~   74 (263)
T cd05052           5 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLVQLLGVCT----RE   74 (263)
T ss_pred             hHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhC------CCCChhheEEEEc----CC
Confidence            4679999999999999999999999999999999887655566788999999998      7888999999987    44


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||+..              
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~dlkp~nil~~~--------------  139 (263)
T cd05052          75 PPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLVGE--------------  139 (263)
T ss_pred             CCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeecccCcceEEEcC--------------
Confidence            6889999999 88999998765555689999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (263)
T cd05052         140 --------------------------------------------------------------------------------  139 (263)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc----CCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF----TNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~----~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                            +..++|+|||.+.......    ....++..|+|||.+.+..++.++|||||||++|+
T Consensus       140 ----------------------~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e  197 (263)
T cd05052         140 ----------------------NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE  197 (263)
T ss_pred             ----------------------CCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHH
Confidence                                  4569999999986543221    11223567999999998889999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          356 LAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       356 llt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |++ |..||.+..      .......+..   .                                      .....+...
T Consensus       198 l~t~g~~p~~~~~------~~~~~~~~~~---~--------------------------------------~~~~~~~~~  230 (263)
T cd05052         198 IATYGMSPYPGID------LSQVYELLEK---G--------------------------------------YRMERPEGC  230 (263)
T ss_pred             HHcCCCCCCCCCC------HHHHHHHHHC---C--------------------------------------CCCCCCCCC
Confidence            998 999996432      1111111100   0                                      001223345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +..+.+||.+||..||.+|||+.++++
T Consensus       231 ~~~~~~li~~cl~~~p~~Rp~~~~l~~  257 (263)
T cd05052         231 PPKVYELMRACWQWNPSDRPSFAEIHQ  257 (263)
T ss_pred             CHHHHHHHHHHccCCcccCCCHHHHHH
Confidence            688999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-39  Score=317.81  Aligned_cols=275  Identities=33%  Similarity=0.510  Sum_probs=215.3

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      |++.+.||+|+||.||+|.+..+++.||+|++...   ......+..|+.+++++      .|+||+++++++.    ..
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~----~~   70 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKEL------KHPNIVKLLDVIH----TE   70 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhc------CCCCHHHHHhhhh----cC
Confidence            67889999999999999999999999999998864   33345677899999998      6888999999998    44


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ...++||||++++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||+|+||+++.               
T Consensus        71 ~~~~~v~e~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~~l~~~ni~~~~---------------  133 (282)
T cd07829          71 RKLYLVFEYCDMDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSH-RILHRDLKPQNILINR---------------  133 (282)
T ss_pred             CceEEEecCcCcCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChheEEEcC---------------
Confidence            7899999999889999997543 3599999999999999999999997 9999999999999955               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (282)
T cd07829         134 --------------------------------------------------------------------------------  133 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFEL  356 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~el  356 (530)
                                           ++.++|+|||.+.....   ......++..|+|||.+.+. .++.++|||||||++|+|
T Consensus       134 ---------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l  192 (282)
T cd07829         134 ---------------------DGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEM  192 (282)
T ss_pred             ---------------------CCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHH
Confidence                                 45699999999865432   22344567889999999876 789999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|.+||....      ....+..+...++......+....... .+..  .+...      ..... .   ......+.
T Consensus       193 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~------~~~~~-~---~~~~~~~~  253 (282)
T cd07829         193 ITGKPLFPGDS------EIDQLFKIFQILGTPTEESWPGVTKLP-DYKP--TFPKF------PPKDL-E---KVLPRLDP  253 (282)
T ss_pred             HhCCCCCCCcc------HHHHHHHHHHHhCCCcHHHHHhhcccc-cccc--ccccc------Cccch-H---HhcccccH
Confidence            99999996543      456677777777777666553322111 0000  00000      00000 0   01122367


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+.+||.+||..||.+||++.+++.||||
T Consensus       254 ~~~~~i~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         254 EGIDLLSKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             HHHHHHHHhhccCcccCCCHHHHhhCcCC
Confidence            89999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=1.4e-39  Score=330.19  Aligned_cols=286  Identities=19%  Similarity=0.248  Sum_probs=194.8

Q ss_pred             EEeccc--cceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           48 SKLGWG--HFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        48 ~~LG~G--~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      ..||+|  +||+||+|.+..+|+.||+|++....   ...+.+.+|+.+++.+      +||||++++++|.    .+..
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l------~h~niv~~~~~~~----~~~~   73 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFF------RHPNIMTSWTVFT----TGSW   73 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCcceEeeeEe----cCCc
Confidence            456766  99999999999999999999987543   2235677888888877      7889999999998    4578


Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      .|+||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||+..                
T Consensus        74 ~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~-~ivHrDlkp~Nill~~----------------  136 (328)
T cd08226          74 LWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQN-GYIHRNIKASHILISG----------------  136 (328)
T ss_pred             eEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEeC----------------
Confidence            99999999 78999998765555689999999999999999999997 9999999999999954                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (328)
T cd08226         137 --------------------------------------------------------------------------------  136 (328)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------cCCCCCCCCccCChhhcCC--CCCCcchhHHH
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------FTNDIQTRQYRCPEVLLGS--KYSTPADLWSF  349 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------~~~~~gt~~y~aPE~l~~~--~~~~~~DiWSl  349 (530)
                                          +..++++||+.+......          .....++..|+|||++.+.  .++.++|||||
T Consensus       137 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diwsl  196 (328)
T cd08226         137 --------------------DGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSV  196 (328)
T ss_pred             --------------------CCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHH
Confidence                                345777777654321110          0112345679999999763  47899999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCC---CcccccccccCcc-----ccchhcccCCch
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGG---RYSRDFFNRHGDL-----RHIRRLRFWPLN  421 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~  421 (530)
                      ||++|+|++|.+||....      ..   ..+...+...+...+...   .....+.......     ............
T Consensus       197 G~~l~el~~g~~p~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (328)
T cd08226         197 GITACELATGRVPFQDML------RT---QMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTM  267 (328)
T ss_pred             HHHHHHHHhCCCCCCCcC------hH---HHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhcccccccc
Confidence            999999999999996432      11   122222221111000000   0000000000000     000000000000


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .............++.+.+||++||++||.+|||+.|+|+||||+...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~~  315 (328)
T cd08226         268 TSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVK  315 (328)
T ss_pred             ccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHHHH
Confidence            000001112234678899999999999999999999999999997543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=1.8e-39  Score=334.94  Aligned_cols=250  Identities=23%  Similarity=0.335  Sum_probs=193.5

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCC-----CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQT-----SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~-----~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..++|++.+.||+|+||.||+|++...     ++.||||+++...  .....+.+|+.+++.+.     .|+|||++++.
T Consensus        36 ~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~-----~h~nIv~~~~~  110 (374)
T cd05106          36 PRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLG-----QHKNIVNLLGA  110 (374)
T ss_pred             cHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhc-----cCCceeeEeeE
Confidence            356899999999999999999986443     4589999987543  23456788999999884     58889999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhc-------------------------------------------------
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYAD-------------------------------------------------  142 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~-------------------------------------------------  142 (530)
                      +.    ....+|+||||| +++|.+++....                                                 
T Consensus       111 ~~----~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (374)
T cd05106         111 CT----HGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRP  186 (374)
T ss_pred             ec----CCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCC
Confidence            88    446899999999 999999885422                                                 


Q ss_pred             -------------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccc
Q 045988          143 -------------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLL  203 (530)
Q Consensus       143 -------------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~  203 (530)
                                         ...+++..+..|+.||+.||+|||++ ||+||||||+|||++.                  
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~-giiHrDLkp~Nil~~~------------------  247 (374)
T cd05106         187 VSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK-NCIHRDVAARNVLLTD------------------  247 (374)
T ss_pred             ccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC-CEEeccCchheEEEeC------------------
Confidence                               12367888999999999999999997 9999999999999964                  


Q ss_pred             cccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccccc
Q 045988          204 TKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGIN  283 (530)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (530)
                                                                                                      
T Consensus       248 --------------------------------------------------------------------------------  247 (374)
T cd05106         248 --------------------------------------------------------------------------------  247 (374)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh
Q 045988          284 KDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT  358 (530)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt  358 (530)
                                        +..++|+|||++......     .....++..|+|||++.+..++.++|||||||++|+|++
T Consensus       248 ------------------~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt  309 (374)
T cd05106         248 ------------------GRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS  309 (374)
T ss_pred             ------------------CCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHh
Confidence                              456999999998653221     112234567999999998899999999999999999997


Q ss_pred             -CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          359 -GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       359 -G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                       |..||.....      ......+... +.                                       ....+...+++
T Consensus       310 ~G~~Pf~~~~~------~~~~~~~~~~-~~---------------------------------------~~~~~~~~~~~  343 (374)
T cd05106         310 LGKSPYPGILV------NSKFYKMVKR-GY---------------------------------------QMSRPDFAPPE  343 (374)
T ss_pred             CCCCCCccccc------cHHHHHHHHc-cc---------------------------------------CccCCCCCCHH
Confidence             9999964321      1111111100 00                                       00112234678


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhc
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +.+||.+||+.||.+|||+.++++
T Consensus       344 l~~li~~cl~~dp~~RPs~~~l~~  367 (374)
T cd05106         344 IYSIMKMCWNLEPTERPTFSQISQ  367 (374)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHH
Confidence            999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-40  Score=321.79  Aligned_cols=263  Identities=24%  Similarity=0.343  Sum_probs=220.3

Q ss_pred             ccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcc
Q 045988           30 YHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKC  105 (530)
Q Consensus        30 ~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~  105 (530)
                      +|...-.+.++..+|..+.+||+|+||.|.+|..+.+.+.||||++++.-    ...+--+.|-++|....     .-|.
T Consensus       337 ~~~~~~~d~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~-----kppF  411 (683)
T KOG0696|consen  337 FHNSSKRDRIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPG-----KPPF  411 (683)
T ss_pred             CCCCCcccceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCC-----CCch
Confidence            34444456778889999999999999999999999999999999988752    33445566777775543     5578


Q ss_pred             eeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       106 Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                      +++++..|+    +-+.+|+||||+ ||+|.-.|+.  .+.+.+..+..++..|+.||-|||++ |||.||||.+||||+
T Consensus       412 L~qlHScFQ----TmDRLyFVMEyvnGGDLMyhiQQ--~GkFKEp~AvFYAaEiaigLFFLh~k-gIiYRDLKLDNvmLd  484 (683)
T KOG0696|consen  412 LVQLHSCFQ----TMDRLYFVMEYVNGGDLMYHIQQ--VGKFKEPVAVFYAAEIAIGLFFLHSK-GIIYRDLKLDNVMLD  484 (683)
T ss_pred             HHHHHHHhh----hhhheeeEEEEecCchhhhHHHH--hcccCCchhhhhhHHHHHHhhhhhcC-CeeeeeccccceEec
Confidence            999999999    557999999999 9999888874  34599999999999999999999998 999999999999996


Q ss_pred             eccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 045988          185 SMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVE  264 (530)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (530)
                      .                                                                               
T Consensus       485 ~-------------------------------------------------------------------------------  485 (683)
T KOG0696|consen  485 S-------------------------------------------------------------------------------  485 (683)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             cccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccc---cccccCCCCCCCCccCChhhcCCCCC
Q 045988          265 DQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~---~~~~~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                           ++.+||+|||+++.   ......+++|||.|+|||++...+|+
T Consensus       486 -------------------------------------eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYg  528 (683)
T KOG0696|consen  486 -------------------------------------EGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYG  528 (683)
T ss_pred             -------------------------------------CCceEeeecccccccccCCcceeeecCCCcccccceEEecccc
Confidence                                                 68899999999964   22345678999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCch
Q 045988          342 TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       342 ~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      .++|+||+||+||||+.|++||++..      +.+.                                          +.
T Consensus       529 ksvDWWa~GVLLyEmlaGQpPFdGeD------E~el------------------------------------------F~  560 (683)
T KOG0696|consen  529 KSVDWWAFGVLLYEMLAGQPPFDGED------EDEL------------------------------------------FQ  560 (683)
T ss_pred             cchhHHHHHHHHHHHHcCCCCCCCCC------HHHH------------------------------------------HH
Confidence            99999999999999999999998654      1122                                          23


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCH-----HHHhcCCCCCCC
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTA-----AQCLTHPWINVG  468 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta-----~elL~hp~f~~~  468 (530)
                      .|...+..++...|.++.+++..+|...|.+|..+     .+|-.||||+.-
T Consensus       561 aI~ehnvsyPKslSkEAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~i  612 (683)
T KOG0696|consen  561 AIMEHNVSYPKSLSKEAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRRI  612 (683)
T ss_pred             HHHHccCcCcccccHHHHHHHHHHhhcCCccccCCCCccccchhhCcchhhc
Confidence            34445667788889999999999999999999864     689999999753

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=3.6e-39  Score=319.31  Aligned_cols=250  Identities=23%  Similarity=0.378  Sum_probs=193.9

Q ss_pred             EeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEE
Q 045988           49 KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVC  124 (530)
Q Consensus        49 ~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~  124 (530)
                      .||+|+||.||+|.+..+++.||||++.....    .......|..+++.+.+.   .||+|+++++.|.    .....|
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~----~~~~~~   73 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG---DCPFIVCMSYAFH----TPDKLS   73 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhC---CCCcEeeeeeeee----cCCEEE
Confidence            48999999999999999999999998765421    122244555555555432   7899999999998    457899


Q ss_pred             EEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccc
Q 045988          125 MVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLL  203 (530)
Q Consensus       125 lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~  203 (530)
                      +||||+ +++|..++..  ...+++..++.|+.||+.||.|||++ +|+||||||+||+++.                  
T Consensus        74 ~v~e~~~g~~L~~~l~~--~~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~di~p~nili~~------------------  132 (278)
T cd05606          74 FILDLMNGGDLHYHLSQ--HGVFSEAEMRFYAAEIILGLEHMHNR-FVVYRDLKPANILLDE------------------  132 (278)
T ss_pred             EEEecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CEEcCCCCHHHEEECC------------------
Confidence            999999 8899888763  34589999999999999999999997 9999999999999954                  


Q ss_pred             cccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccccc
Q 045988          204 TKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGIN  283 (530)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (530)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (278)
T cd05606         133 --------------------------------------------------------------------------------  132 (278)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHHHHHhCCC
Q 045988          284 KDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDV  361 (530)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~elltG~~  361 (530)
                                        +..++|+|||++..... ......|+..|+|||++.+. .++.++||||+||++|+|++|..
T Consensus       133 ------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~  194 (278)
T cd05606         133 ------------------HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHS  194 (278)
T ss_pred             ------------------CCCEEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCC
Confidence                              45689999999864322 23345789999999999754 68999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHH
Q 045988          362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADF  441 (530)
Q Consensus       362 PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL  441 (530)
                      ||.......    .......                                         .......++...+..+.+|
T Consensus       195 p~~~~~~~~----~~~~~~~-----------------------------------------~~~~~~~~~~~~s~~~~~l  229 (278)
T cd05606         195 PFRQHKTKD----KHEIDRM-----------------------------------------TLTMAVELPDSFSPELRSL  229 (278)
T ss_pred             CCCCCCccc----hHHHHHH-----------------------------------------hhccCCCCCCcCCHHHHHH
Confidence            996432111    0000000                                         0001122334457889999


Q ss_pred             HhhccCcCCCCCc-----CHHHHhcCCCCCCCC
Q 045988          442 LVPILDFVPEKRP-----TAAQCLTHPWINVGP  469 (530)
Q Consensus       442 l~~mL~~dP~~Rp-----ta~elL~hp~f~~~~  469 (530)
                      |.+||..||.+||     ++.++++||||+...
T Consensus       230 i~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~~~  262 (278)
T cd05606         230 LEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLD  262 (278)
T ss_pred             HHHHhhcCHHhccCCCCCCHHHHHhCccccCCC
Confidence            9999999999999     999999999998643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=2.6e-39  Score=333.92  Aligned_cols=252  Identities=24%  Similarity=0.349  Sum_probs=194.5

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEe-----CCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWD-----TQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~-----~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..++|++.++||+|+||+||+|++     ..++..||+|+++...  ...+.+.+|+.+|+.+.     .||||+++++
T Consensus        32 ~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~-----~HpnIv~l~~  106 (375)
T cd05104          32 FPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-----NHINIVNLLG  106 (375)
T ss_pred             cchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhc-----CCcceeeeee
Confidence            3456899999999999999999974     3457799999987543  23456788999999984     6889999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc-----------------------------------------------
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY-----------------------------------------------  143 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~-----------------------------------------------  143 (530)
                      ++.    .+...++||||| +++|.+++.....                                               
T Consensus       107 ~~~----~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  182 (375)
T cd05104         107 ACT----VGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTK  182 (375)
T ss_pred             eec----cCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccc
Confidence            998    456899999999 9999998864221                                               


Q ss_pred             --------------------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          144 --------------------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       144 --------------------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                                                ..+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~Nill~~------------  249 (375)
T cd05104         183 ADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK-NCIHRDLAARNILLTH------------  249 (375)
T ss_pred             cccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCchhhEEEEC------------
Confidence                                      1367888999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       250 --------------------------------------------------------------------------------  249 (375)
T cd05104         250 --------------------------------------------------------------------------------  249 (375)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                              ...++|+|||++......     .....++..|+|||++.+..++.++|||||||+
T Consensus       250 ------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~  305 (375)
T cd05104         250 ------------------------GRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIL  305 (375)
T ss_pred             ------------------------CCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHH
Confidence                                    356899999998653321     112334567999999999899999999999999


Q ss_pred             HHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          353 CFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       353 l~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      +|+|++ |..||.....      ......+... +.                                       ....+
T Consensus       306 l~ellt~g~~p~~~~~~------~~~~~~~~~~-~~---------------------------------------~~~~~  339 (375)
T cd05104         306 LWEIFSLGSSPYPGMPV------DSKFYKMIKE-GY---------------------------------------RMLSP  339 (375)
T ss_pred             HHHHHhcCCCCCCCCCc------hHHHHHHHHh-Cc---------------------------------------cCCCC
Confidence            999998 8899964321      1111111000 00                                       00112


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ...+.++.+||.+||+.||.+||++.|+++.
T Consensus       340 ~~~~~~l~~li~~cl~~dP~~RPs~~eil~~  370 (375)
T cd05104         340 ECAPSEMYDIMKSCWDADPLKRPTFKQIVQL  370 (375)
T ss_pred             CCCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence            2335689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4e-40  Score=331.47  Aligned_cols=248  Identities=27%  Similarity=0.388  Sum_probs=202.9

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +....+++++.||+|-||.||+|.... ...||+|.++......+.+.+|++||++|      .|++||++++++..   
T Consensus       203 i~r~~l~l~~~LG~G~FG~V~~g~~~~-~~~vavk~ik~~~m~~~~f~~Ea~iMk~L------~H~~lV~l~gV~~~---  272 (468)
T KOG0197|consen  203 IPREELKLIRELGSGQFGEVWLGKWNG-STKVAVKTIKEGSMSPEAFLREAQIMKKL------RHEKLVKLYGVCTK---  272 (468)
T ss_pred             ecHHHHHHHHHhcCCccceEEEEEEcC-CCcccceEEeccccChhHHHHHHHHHHhC------cccCeEEEEEEEec---
Confidence            334455668999999999999997543 33799999998777788999999999999      67889999999984   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       +..+||||||| .|+|.+++.......+.......++.||+.|++||+++ ++|||||-..||||+.            
T Consensus       273 -~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~-~~IHRDLAARNiLV~~------------  338 (468)
T KOG0197|consen  273 -QEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESK-NYIHRDLAARNILVDE------------  338 (468)
T ss_pred             -CCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhC-Cccchhhhhhheeecc------------
Confidence             35799999999 99999999875556699999999999999999999997 9999999999999966            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       339 --------------------------------------------------------------------------------  338 (468)
T KOG0197|consen  339 --------------------------------------------------------------------------------  338 (468)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-cCCCCC---CCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-FTNDIQ---TRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~~~~~g---t~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                              +..+||+|||+|+..... .+...|   ...|.|||++....++.++|||||||+|
T Consensus       339 ------------------------~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL  394 (468)
T KOG0197|consen  339 ------------------------DLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLL  394 (468)
T ss_pred             ------------------------CceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhH
Confidence                                    567999999999853322 222223   4479999999999999999999999999


Q ss_pred             HHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |||+| |+.||++.+      ..+.+..+.+-                                         .+...|.
T Consensus       395 ~E~fT~G~~py~~ms------n~ev~~~le~G-----------------------------------------yRlp~P~  427 (468)
T KOG0197|consen  395 WELFTYGRVPYPGMS------NEEVLELLERG-----------------------------------------YRLPRPE  427 (468)
T ss_pred             HHHhccCCCCCCCCC------HHHHHHHHhcc-----------------------------------------CcCCCCC
Confidence            99998 888887655      33333332211                                         1123456


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+++.+.+++..||+.+|++|||.+.+..
T Consensus       428 ~CP~~vY~lM~~CW~~~P~~RPtF~~L~~  456 (468)
T KOG0197|consen  428 GCPDEVYELMKSCWHEDPEDRPTFETLRE  456 (468)
T ss_pred             CCCHHHHHHHHHHhhCCcccCCCHHHHHH
Confidence            78899999999999999999999886653

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=6.4e-39  Score=316.00  Aligned_cols=252  Identities=27%  Similarity=0.428  Sum_probs=197.9

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-----------chHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-----------YTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-----------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +|.+.+.||.|+||.||+|.+..+++.||||.++....           ..+.+.+|+.+++.+      .|+||+++++
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~   75 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDL------DHLNIVQYLG   75 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhc------CCCCcceEEE
Confidence            68999999999999999999999999999998753211           123567799999988      7888999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ++.    .....++||||+ +++|.+++...  ..+++..++.++.||+.||.|||++ |++||||||+||+++.     
T Consensus        76 ~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~~~nil~~~-----  143 (272)
T cd06629          76 FET----TEEYLSIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLHSK-GILHRDLKADNLLVDA-----  143 (272)
T ss_pred             Eec----cCCceEEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhhC-CeeecCCChhhEEEcC-----
Confidence            887    457899999999 89999988654  4589999999999999999999997 9999999999999954     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (272)
T cd06629         144 --------------------------------------------------------------------------------  143 (272)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCC--CCCc
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSK--YSTP  343 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~--~~~~  343 (530)
                                                     ...++|+|||++......     .....|+..|+|||++....  ++.+
T Consensus       144 -------------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~  192 (272)
T cd06629         144 -------------------------------DGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAK  192 (272)
T ss_pred             -------------------------------CCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCcc
Confidence                                           456999999998653221     23346788999999988654  8899


Q ss_pred             chhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhh
Q 045988          344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       344 ~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      +|+|||||++|+|++|..||...         .....+.........                               ..
T Consensus       193 ~Dv~slG~~l~~l~~g~~p~~~~---------~~~~~~~~~~~~~~~-------------------------------~~  232 (272)
T cd06629         193 VDIWSLGCVVLEMFAGRRPWSDE---------EAIAAMFKLGNKRSA-------------------------------PP  232 (272)
T ss_pred             chhHHHHHHHHHHHhCCCCCcCc---------chHHHHHHhhccccC-------------------------------Cc
Confidence            99999999999999999999522         112222211100000                               00


Q ss_pred             hhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       424 ~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .  .......++..+.+||.+||..||.+|||++++|+||||
T Consensus       233 ~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         233 I--PPDVSMNLSPVALDFLNACFTINPDNRPTARELLQHPFI  272 (272)
T ss_pred             C--CccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhCCCC
Confidence            0  001112346789999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=8.5e-39  Score=312.00  Aligned_cols=250  Identities=24%  Similarity=0.421  Sum_probs=201.7

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|.+.+.||+|+||.||+|.+..+|..||+|.+....   ...+.+.+|+.+++.+      .|+||+++++.+.    .
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~------~h~~i~~~~~~~~----~   70 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKM------KHPNIVTFFASFQ----E   70 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhC------CCCChhhhhheec----c
Confidence            5899999999999999999999999999999886542   2345677899999999      6888999999987    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....++||||+ +++|.+++.......+++..+..++.||+.||.|||++ +|+|+||||+||+++..            
T Consensus        71 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~i~H~dl~~~nil~~~~------------  137 (257)
T cd08225          71 NGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR-KILHRDIKSQNIFLSKN------------  137 (257)
T ss_pred             CCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCCHHHEEEcCC------------
Confidence            57899999999 88999988754444589999999999999999999997 99999999999999541            


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (257)
T cd08225         138 --------------------------------------------------------------------------------  137 (257)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             ...++|+|||.+......   .....|++.|+|||++.+..++.++|+|||||++|+
T Consensus       138 -----------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~  194 (257)
T cd08225         138 -----------------------GMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYE  194 (257)
T ss_pred             -----------------------CCeEEecccccchhccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHH
Confidence                                   234799999998654322   223468899999999988889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....         ....+.......                                      ........+
T Consensus       195 l~~g~~p~~~~~---------~~~~~~~~~~~~--------------------------------------~~~~~~~~~  227 (257)
T cd08225         195 LCTLKHPFEGNN---------LHQLVLKICQGY--------------------------------------FAPISPNFS  227 (257)
T ss_pred             HHhCCCCCCCcc---------HHHHHHHHhccc--------------------------------------CCCCCCCCC
Confidence            999999995322         111111111000                                      001122345


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .++.++|.+||..+|++|||+.++++||||
T Consensus       228 ~~~~~~i~~~l~~~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         228 RDLRSLISQLFKVSPRDRPSITSILKRPFL  257 (257)
T ss_pred             HHHHHHHHHHhccChhhCcCHHHHhhCCCC
Confidence            789999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=8.2e-39  Score=312.18  Aligned_cols=246  Identities=24%  Similarity=0.409  Sum_probs=198.9

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      +|++.++||+|+||.||++.+..+++.||+|.++..  ....+.+.+|+.+++.+      .|+||+++++.|.    .+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~~   70 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKM------KHPNIVAFKESFE----AD   70 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhC------CCCCcceEEEEEE----EC
Confidence            589999999999999999999999999999987643  23356677899999988      7888999999998    45


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+|+||||+ +++|.+++.......+++..+..++.||+.||.|||++ ||+|+||||+|||++.              
T Consensus        71 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~H~dl~p~nili~~--------------  135 (255)
T cd08219          71 GHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK-RVLHRDIKSKNIFLTQ--------------  135 (255)
T ss_pred             CEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCcceEEECC--------------
Confidence            7999999999 88999988755555689999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (255)
T cd08219         136 --------------------------------------------------------------------------------  135 (255)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            +..++|+|||.+......   .....|++.|+|||++.+..++.++|+|||||++|+|
T Consensus       136 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l  193 (255)
T cd08219         136 ----------------------NGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYEL  193 (255)
T ss_pred             ----------------------CCcEEEcccCcceeecccccccccccCCccccCHHHHccCCcCchhhhhhhchhheeh
Confidence                                  456899999998654322   2345789999999999988899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||...+       ....  ...+....                                      ....+...+.
T Consensus       194 ~~g~~p~~~~~-------~~~~--~~~~~~~~--------------------------------------~~~~~~~~~~  226 (255)
T cd08219         194 CTLKHPFQANS-------WKNL--ILKVCQGS--------------------------------------YKPLPSHYSY  226 (255)
T ss_pred             hhccCCCCCCC-------HHHH--HHHHhcCC--------------------------------------CCCCCcccCH
Confidence            99999995322       1111  11110000                                      0012233456


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      .+.+||.+||+.||.+||++.++|+-
T Consensus       227 ~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         227 ELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             HHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            78999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=2.6e-39  Score=319.60  Aligned_cols=248  Identities=27%  Similarity=0.448  Sum_probs=202.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|.+.+.||+|+||.||+|.+..+++.||+|++....    .....+.+|+.++.++.     +|+||+++++++.   
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~-----~~~~i~~~~~~~~---   72 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLN-----GHPGIIKLYYTFQ---   72 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcc-----cCCCchhHHHHhc---
Confidence            47999999999999999999999999999999987632    22356778889988883     3899999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .....++||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ |++|+||||+||+++.           
T Consensus        73 -~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~ql~~~l~~Lh~~-~~~H~dl~~~ni~i~~-----------  137 (280)
T cd05581          73 -DEENLYFVLEYAPNGELLQYIRKY--GSLDEKCTRFYAAEILLALEYLHSK-GIIHRDLKPENILLDK-----------  137 (280)
T ss_pred             -CCceEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHeEECC-----------
Confidence             457899999999 99999998754  3599999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (280)
T cd05581         138 --------------------------------------------------------------------------------  137 (280)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----------------------cCCCCCCCCccCCh
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----------------------FTNDIQTRQYRCPE  333 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----------------------~~~~~gt~~y~aPE  333 (530)
                                               ++.++|+|||.+......                       .....++..|+|||
T Consensus       138 -------------------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe  192 (280)
T cd05581         138 -------------------------DMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPE  192 (280)
T ss_pred             -------------------------CCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHH
Confidence                                     456899999988653321                       12345788999999


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccch
Q 045988          334 VLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR  413 (530)
Q Consensus       334 ~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  413 (530)
                      ++.+..++.++|||||||++|+|++|..||...+      .......+.                               
T Consensus       193 ~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~-------------------------------  235 (280)
T cd05581         193 LLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN------EYLTFQKIL-------------------------------  235 (280)
T ss_pred             HhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHH-------------------------------
Confidence            9988889999999999999999999999996432      111111111                               


Q ss_pred             hcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCH----HHHhcCCCC
Q 045988          414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTA----AQCLTHPWI  465 (530)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta----~elL~hp~f  465 (530)
                                 .....++...++.+.+||.+||+.||.+||++    .++|+||||
T Consensus       236 -----------~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         236 -----------KLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             -----------hcCCCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence                       11123344456789999999999999999999    999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=4.1e-39  Score=327.90  Aligned_cols=282  Identities=32%  Similarity=0.505  Sum_probs=214.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+...   ......+.+|+.+++++.     +||||++++++|... 
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~ni~~~~~~~~~~-   79 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELG-----DHPNIVKLLNVIKAE-   79 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhc-----CCCCccceeeeeccC-
Confidence            57899999999999999999999999999999977542   223345678999999883     578899999998753 


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ++...|+||||++++|..++...   .+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        80 -~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~-~i~H~dl~p~nill~~------------  142 (337)
T cd07852          80 -NDKDIYLVFEYMETDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSG-NVIHRDLKPSNILLNS------------  142 (337)
T ss_pred             -CCceEEEEecccccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEcC------------
Confidence             34678999999988999888643   588899999999999999999997 9999999999999965            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (337)
T cd07852         143 --------------------------------------------------------------------------------  142 (337)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--------ccCCCCCCCCccCChhhcC-CCCCCcchhHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--------QFTNDIQTRQYRCPEVLLG-SKYSTPADLWS  348 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--------~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWS  348 (530)
                                              ++.++|+|||.+.....        .....+||+.|+|||++.+ ..++.++||||
T Consensus       143 ------------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~s  198 (337)
T cd07852         143 ------------------------DCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWS  198 (337)
T ss_pred             ------------------------CCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHH
Confidence                                    56799999999864321        2234568999999998865 45789999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCC--cccccccccCccccchhcccCCchhhhhh
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGR--YSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||++|+|++|++||.+.+      ..+....+....+..+...+....  .....+....      ....   ...   
T Consensus       199 lG~~l~el~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~---  260 (337)
T cd07852         199 VGCILGEMLLGKPLFPGTS------TLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLP------SRPR---KPL---  260 (337)
T ss_pred             HHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcc------cccc---cch---
Confidence            9999999999999997544      455666777776665543321110  0000000000      0000   000   


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                       .......+.++.+||.+||+.||.+|||+.++|+||||+.-
T Consensus       261 -~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~  301 (337)
T cd07852         261 -DELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQF  301 (337)
T ss_pred             -hhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhh
Confidence             01112257889999999999999999999999999999764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=5.7e-39  Score=315.68  Aligned_cols=247  Identities=19%  Similarity=0.272  Sum_probs=193.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeC---CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ...+|++.+.||+|+||.||+|..+   ..+..||+|+++...  .....+.+|+.+++++      .||||+++++++.
T Consensus         3 ~~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~   76 (266)
T cd05064           3 DNKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQF------DHSNIVRLEGVIT   76 (266)
T ss_pred             chHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcC------CCCCcCeEEEEEe
Confidence            4578999999999999999999765   346799999987653  2235677899999888      7889999999988


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          .+...++||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        77 ----~~~~~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~i~~al~~lH~~-~iiH~dikp~nili~~--------  142 (266)
T cd05064          77 ----RGNTMMIVTEYMSNGALDSFLRKH-EGQLVAGQLMGMLPGLASGMKYLSEM-GYVHKGLAAHKVLVNS--------  142 (266)
T ss_pred             ----cCCCcEEEEEeCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHC-CEeeccccHhhEEEcC--------
Confidence                457899999999 77888888643 23589999999999999999999997 9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (266)
T cd05064         143 --------------------------------------------------------------------------------  142 (266)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                  +..++++|||.+......    .....++..|+|||++.+..++.++|||||
T Consensus       143 ----------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  194 (266)
T cd05064         143 ----------------------------DLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSF  194 (266)
T ss_pred             ----------------------------CCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHH
Confidence                                        456899999987543211    112234678999999999899999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          350 ACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       350 G~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      ||++|+|++ |..||...+      ....+..+....                                         ..
T Consensus       195 G~~l~ell~~g~~p~~~~~------~~~~~~~~~~~~-----------------------------------------~~  227 (266)
T cd05064         195 GIVMWEVMSYGERPYWDMS------GQDVIKAVEDGF-----------------------------------------RL  227 (266)
T ss_pred             HHHHHHHhcCCCCCcCcCC------HHHHHHHHHCCC-----------------------------------------CC
Confidence            999999875 999996432      111111111000                                         01


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ..+...+..+.+|+.+||..+|.+||++.++++
T Consensus       228 ~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~  260 (266)
T cd05064         228 PAPRNCPNLLHQLMLDCWQKERGERPRFSQIHS  260 (266)
T ss_pred             CCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHH
Confidence            122345678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=6.4e-39  Score=320.02  Aligned_cols=261  Identities=28%  Similarity=0.432  Sum_probs=207.4

Q ss_pred             cccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           33 VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        33 ~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +.+|+..  ++|.+.+.||+|+||.||++.+..+++.||+|.+.... ...+.+.+|+.+++.+      .||||+++++
T Consensus        12 ~~~~~~~--~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~hp~i~~~~~   83 (293)
T cd06647          12 VSVGDPK--KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMREN------KHPNIVNYLD   83 (293)
T ss_pred             eeccCch--hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhc------CCCCeeehhh
Confidence            3456654  79999999999999999999998899999999876432 3345678899999888      7888999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      .+..    ....|+||||+ +++|.+++..   ..+++..+..++.||+.||.|||++ |++||||||+||+++.     
T Consensus        84 ~~~~----~~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~-gi~H~dL~p~Nili~~-----  150 (293)
T cd06647          84 SYLV----GDELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLGM-----  150 (293)
T ss_pred             eeee----CCcEEEEEecCCCCcHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC-CEeeccCCHHHEEEcC-----
Confidence            9984    46899999999 8899998863   3488999999999999999999997 9999999999999954     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (293)
T cd06647         151 --------------------------------------------------------------------------------  150 (293)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                     +..++|+|||++.....   ......|++.|+|||.+.+..++.++|+|
T Consensus       151 -------------------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~  199 (293)
T cd06647         151 -------------------------------DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIW  199 (293)
T ss_pred             -------------------------------CCCEEEccCcceecccccccccccccCChhhcCchhhccCCCCchhhHH
Confidence                                           45689999998854322   22334688899999999888899999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|..||......      ..+..+. ..+                                      ...
T Consensus       200 slG~ll~~ll~g~~pf~~~~~~------~~~~~~~-~~~--------------------------------------~~~  234 (293)
T cd06647         200 SLGIMAIEMVEGEPPYLNENPL------RALYLIA-TNG--------------------------------------TPE  234 (293)
T ss_pred             HHHHHHHHHHhCCCCCCCCChh------hheeehh-cCC--------------------------------------CCC
Confidence            9999999999999999643211      0000000 000                                      000


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ...+...+..+.+||.+||..+|.+||++.+++.||||+....
T Consensus       235 ~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h~~~~~~~~  277 (293)
T cd06647         235 LQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHPFLKIAKP  277 (293)
T ss_pred             CCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcCcc
Confidence            1112234567899999999999999999999999999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2.2e-39  Score=329.71  Aligned_cols=252  Identities=24%  Similarity=0.361  Sum_probs=195.5

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..++|++.++||+|+||.||+|.+..     +++.||+|+++...  .....+.+|+.++.++.     .|+||++++++
T Consensus         5 ~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~-----~h~niv~~~~~   79 (337)
T cd05054           5 PRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIG-----HHLNVVNLLGA   79 (337)
T ss_pred             CHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhc-----cCcchhheeee
Confidence            35689999999999999999997533     45899999987532  22345778999998884     68899999998


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhcc------------------------------------------------
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADY------------------------------------------------  143 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~------------------------------------------------  143 (530)
                      +..   .+..+++||||+ +++|.+++.....                                                
T Consensus        80 ~~~---~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (337)
T cd05054          80 CTK---PGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDV  156 (337)
T ss_pred             Eec---CCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhc
Confidence            874   346889999999 8899998864321                                                


Q ss_pred             -----------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCC
Q 045988          144 -----------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLD  212 (530)
Q Consensus       144 -----------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (530)
                                 ..++...+..++.||+.||+|||++ ||+||||||+|||++.                           
T Consensus       157 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~-~ivHrDikp~Nill~~---------------------------  208 (337)
T cd05054         157 EEDEEGDELYKEPLTLEDLISYSFQVARGMEFLASR-KCIHRDLAARNILLSE---------------------------  208 (337)
T ss_pred             ccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceEEEeC---------------------------
Confidence                       2478889999999999999999997 9999999999999965                           


Q ss_pred             CchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCch
Q 045988          213 PSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRS  292 (530)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (530)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (337)
T cd05054         209 --------------------------------------------------------------------------------  208 (337)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCC
Q 045988          293 RRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPH  366 (530)
Q Consensus       293 ~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~  366 (530)
                               +..++|+|||++......     .....++..|+|||++.+..++.++|||||||++|+|++ |..||.+.
T Consensus       209 ---------~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~  279 (337)
T cd05054         209 ---------NNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGV  279 (337)
T ss_pred             ---------CCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCC
Confidence                     456999999999753211     223345678999999999999999999999999999998 99999643


Q ss_pred             CCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhcc
Q 045988          367 SGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPIL  446 (530)
Q Consensus       367 ~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL  446 (530)
                      ..      .+.+...... +.                                       ....+...++++.+|+.+||
T Consensus       280 ~~------~~~~~~~~~~-~~---------------------------------------~~~~~~~~~~~~~~l~~~cl  313 (337)
T cd05054         280 QI------DEEFCRRLKE-GT---------------------------------------RMRAPEYATPEIYSIMLDCW  313 (337)
T ss_pred             Cc------cHHHHHHHhc-cC---------------------------------------CCCCCccCCHHHHHHHHHHc
Confidence            21      1111111000 00                                       00112234578999999999


Q ss_pred             CcCCCCCcCHHHHhcC
Q 045988          447 DFVPEKRPTAAQCLTH  462 (530)
Q Consensus       447 ~~dP~~Rpta~elL~h  462 (530)
                      +.+|++||++.|+++|
T Consensus       314 ~~~p~~RPs~~ell~~  329 (337)
T cd05054         314 HNNPEDRPTFSELVEI  329 (337)
T ss_pred             cCChhhCcCHHHHHHH
Confidence            9999999999999985

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=3.7e-39  Score=315.96  Aligned_cols=245  Identities=29%  Similarity=0.395  Sum_probs=198.4

Q ss_pred             eccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           50 LGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        50 LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ||.|+||.||+|.+..+++.||+|++....    .....+.+|+.+++.+      .||||+++++.+.    .+...|+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~~~~~~l   70 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEEC------NHPFIVKLYRTFK----DKKYIYM   70 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhC------CCCCEeeeeeeEE----cCCccEE
Confidence            799999999999999999999999987543    2345678899999988      7888999999988    4578999


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccc
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLT  204 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~  204 (530)
                      ||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ |++|+||||+||+++.                   
T Consensus        71 v~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lH~~-~~~h~dl~~~nilv~~-------------------  128 (262)
T cd05572          71 LMEYCLGGELWTILRDR--GLFDEYTARFYIACVVLAFEYLHNR-GIIYRDLKPENLLLDS-------------------  128 (262)
T ss_pred             EEecCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCHHHEEEcC-------------------
Confidence            99999 89999998643  3489999999999999999999997 9999999999999955                   


Q ss_pred             ccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 045988          205 KKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK  284 (530)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (530)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (262)
T cd05572         129 --------------------------------------------------------------------------------  128 (262)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCC
Q 045988          285 DCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL  362 (530)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~P  362 (530)
                                       ++.++|+|||.+......  .....|++.|+|||.+.+..++.++|+|||||++|+|++|..|
T Consensus       129 -----------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p  191 (262)
T cd05572         129 -----------------NGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPP  191 (262)
T ss_pred             -----------------CCCEEEeeCCcccccCcccccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCC
Confidence                             456999999999754332  2345688999999999888899999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHH
Q 045988          363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFL  442 (530)
Q Consensus       363 F~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl  442 (530)
                      |.....       +....+..+..                                     ......++...++.+.+||
T Consensus       192 ~~~~~~-------~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~i  227 (262)
T cd05572         192 FGEDDE-------DPMEIYNDILK-------------------------------------GNGKLEFPNYIDKAAKDLI  227 (262)
T ss_pred             cCCCCC-------CHHHHHHHHhc-------------------------------------cCCCCCCCcccCHHHHHHH
Confidence            964331       11111111110                                     0011122333467899999


Q ss_pred             hhccCcCCCCCcC-----HHHHhcCCCCCC
Q 045988          443 VPILDFVPEKRPT-----AAQCLTHPWINV  467 (530)
Q Consensus       443 ~~mL~~dP~~Rpt-----a~elL~hp~f~~  467 (530)
                      .+||..||.+||+     +.|+++||||+.
T Consensus       228 ~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~  257 (262)
T cd05572         228 KQLLRRNPEERLGNLKGGIKDIKKHKWFNG  257 (262)
T ss_pred             HHHccCChhhCcCCcccCHHHHhcChhhhC
Confidence            9999999999999     999999999985

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=7.7e-39  Score=316.61  Aligned_cols=251  Identities=28%  Similarity=0.395  Sum_probs=202.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..|+..++||.|+||.||+|.+..++..||||++....  .....+.+|+.+++++      .|+||+++++.+.    +
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   73 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYVTKYYGSYL----K   73 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEE----E
Confidence            46889999999999999999999999999999887543  3345677899999888      7888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....|+||||+ +++|.+++..   ..+++..+..++.|++.||+|||++ +++|+||+|+||+++.             
T Consensus        74 ~~~~~lv~e~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh~~-~ivH~dl~p~Nil~~~-------------  136 (277)
T cd06640          74 GTKLWIIMEYLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLHSE-KKIHRDIKAANVLLSE-------------  136 (277)
T ss_pred             CCEEEEEEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CccCcCCChhhEEEcC-------------
Confidence            57899999999 8899988853   3488999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (277)
T cd06640         137 --------------------------------------------------------------------------------  136 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             +..++|+|||++......   .....++..|+|||++.+..++.++|+|||||++|+
T Consensus       137 -----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~e  193 (277)
T cd06640         137 -----------------------QGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIE  193 (277)
T ss_pred             -----------------------CCCEEEcccccceeccCCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHH
Confidence                                   456899999998653321   233467889999999988889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||......      ..   .......                                      ....+....+
T Consensus       194 l~tg~~p~~~~~~~------~~---~~~~~~~--------------------------------------~~~~~~~~~~  226 (277)
T cd06640         194 LAKGEPPNSDMHPM------RV---LFLIPKN--------------------------------------NPPTLTGEFS  226 (277)
T ss_pred             HHHCCCCCCCcChH------hH---hhhhhcC--------------------------------------CCCCCchhhh
Confidence            99999999643211      00   0000000                                      0011223456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ..+.+||.+||+.+|.+||++.++++||||....
T Consensus       227 ~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  260 (277)
T cd06640         227 KPFKEFIDACLNKDPSFRPTAKELLKHKFIVKNA  260 (277)
T ss_pred             HHHHHHHHHHcccCcccCcCHHHHHhChHhhhcc
Confidence            7889999999999999999999999999997543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.4e-38  Score=310.60  Aligned_cols=248  Identities=26%  Similarity=0.422  Sum_probs=200.2

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc------cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      +|+..+.||+|+||.||+|.+..++..||||++....      .....+.+|+.+++.+      .|+||+++++++.  
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~--   72 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKL------QHPNIVQYLGTER--   72 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhc------CCCCchheeeeEe--
Confidence            5788899999999999999999899999999876533      2345678899999988      7888999999887  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        .+..+++||||+ +++|.+++...  ..+++..+..++.||+.||+|||+. ||+|+||||+||+++.          
T Consensus        73 --~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~~~ni~~~~----------  137 (258)
T cd06632          73 --EEDNLYIFLELVPGGSLAKLLKKY--GSFPEPVIRLYTRQILLGLEYLHDR-NTVHRDIKGANILVDT----------  137 (258)
T ss_pred             --cCCeEEEEEEecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEECC----------
Confidence              457899999999 78999988643  3488999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (258)
T cd06632         138 --------------------------------------------------------------------------------  137 (258)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCC-CCCcchhHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACI  352 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~i  352 (530)
                                                +..++|+|||.+......  .....|+..|+|||.+.... ++.++|+|||||+
T Consensus       138 --------------------------~~~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~  191 (258)
T cd06632         138 --------------------------NGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCT  191 (258)
T ss_pred             --------------------------CCCEEEccCccceeccccccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHH
Confidence                                      456999999998654322  24456899999999998766 8999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|..||....         ...........                                     .....++.
T Consensus       192 l~~l~~g~~pf~~~~---------~~~~~~~~~~~-------------------------------------~~~~~~~~  225 (258)
T cd06632         192 VLEMATGKPPWSQLE---------GVAAVFKIGRS-------------------------------------KELPPIPD  225 (258)
T ss_pred             HHHHHhCCCCcccCc---------HHHHHHHHHhc-------------------------------------ccCCCcCC
Confidence            999999999995322         11111111000                                     00011233


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ..+..+.+||.+||..||.+||++.++|.||||
T Consensus       226 ~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         226 HLSDEAKDFILKCLQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             CcCHHHHHHHHHHhhcCcccCcCHHHHhcCCCC
Confidence            456789999999999999999999999999997

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.6e-39  Score=312.62  Aligned_cols=247  Identities=27%  Similarity=0.418  Sum_probs=190.7

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccccc----hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY----TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~----~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||.||+|.+..+++.||+|++.+....    ......|..++....     .|+||+++++++.    .+...
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~i~~~~~~~~----~~~~~   72 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQG-----ESPYVAKLYYSFQ----SKDYL   72 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcC-----CCCCeeeeeeeEE----cCCeE
Confidence            5799999999999999999999999998754321    122334444333221     7899999999998    45789


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      |+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||+|+||+++.                 
T Consensus        73 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~-~i~H~dl~p~nil~~~-----------------  132 (260)
T cd05611          73 YLVMEYLNGGDCASLIKTL--GGLPEDWAKQYIAEVVLGVEDLHQR-GIIHRDIKPENLLIDQ-----------------  132 (260)
T ss_pred             EEEEeccCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEECC-----------------
Confidence            9999999 88999988643  3489999999999999999999997 9999999999999954                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (260)
T cd05611         133 --------------------------------------------------------------------------------  132 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCC
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL  362 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~P  362 (530)
                                         +..++|+|||++..... .....|+..|+|||.+.+..++.++|||||||++|+|++|.+|
T Consensus       133 -------------------~~~~~l~dfg~~~~~~~-~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p  192 (260)
T cd05611         133 -------------------TGHLKLTDFGLSRNGLE-NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPP  192 (260)
T ss_pred             -------------------CCcEEEeecccceeccc-cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCC
Confidence                               45699999999865432 2345688999999999988899999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHH
Q 045988          363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFL  442 (530)
Q Consensus       363 F~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl  442 (530)
                      |....      .......+......                                      .........+..+.+||
T Consensus       193 ~~~~~------~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~i  228 (260)
T cd05611         193 FHAET------PDAVFDNILSRRIN--------------------------------------WPEEVKEFCSPEAVDLI  228 (260)
T ss_pred             CCCCC------HHHHHHHHHhcccC--------------------------------------CCCcccccCCHHHHHHH
Confidence            96432      11111111100000                                      00011223567899999


Q ss_pred             hhccCcCCCCCcC---HHHHhcCCCCCC
Q 045988          443 VPILDFVPEKRPT---AAQCLTHPWINV  467 (530)
Q Consensus       443 ~~mL~~dP~~Rpt---a~elL~hp~f~~  467 (530)
                      .+||+.||++||+   +.|+|.||||+.
T Consensus       229 ~~~l~~~p~~R~~~~~~~~~l~~~~~~~  256 (260)
T cd05611         229 NRLLCMDPAKRLGANGYQEIKSHPFFKS  256 (260)
T ss_pred             HHHccCCHHHccCCCcHHHHHcChHhhc
Confidence            9999999999995   479999999974

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=1.7e-38  Score=319.06  Aligned_cols=253  Identities=23%  Similarity=0.368  Sum_probs=201.1

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ..+|.+.+.||+|+||+||+|.+..+++.||+|++....    .....+.+|+.+++.+      +||||+++++++.. 
T Consensus        14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l------~h~niv~~~~~~~~-   86 (307)
T cd06607          14 EKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQL------RHPNTIEYKGCYLR-   86 (307)
T ss_pred             chhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhC------CCCCEEEEEEEEEe-
Confidence            367999999999999999999999999999999876432    2234577899999998      78889999999984 


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                         ....|+||||+.++|.+++.... ..+++..+..++.||+.||.|||+. ||+||||+|+||+++.           
T Consensus        87 ---~~~~~lv~e~~~g~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~~-~i~H~dl~p~nIl~~~-----------  150 (307)
T cd06607          87 ---EHTAWLVMEYCLGSASDILEVHK-KPLQEVEIAAICHGALQGLAYLHSH-ERIHRDIKAGNILLTE-----------  150 (307)
T ss_pred             ---CCeEEEEHHhhCCCHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCcccEEECC-----------
Confidence               46899999999888888876433 3589999999999999999999996 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (307)
T cd06607         151 --------------------------------------------------------------------------------  150 (307)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhc---CCCCCCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLL---GSKYSTPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~---~~~~~~~~DiWSlG~il  353 (530)
                                               ++.++|+|||++..... .....+++.|+|||++.   ...++.++|||||||++
T Consensus       151 -------------------------~~~~kL~dfg~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il  204 (307)
T cd06607         151 -------------------------PGTVKLADFGSASLVSP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITC  204 (307)
T ss_pred             -------------------------CCCEEEeecCcceecCC-CCCccCCccccCceeeeccCCCCCCcccchHHHHHHH
Confidence                                     45799999999865432 23457889999999985   34588999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||....         .......+....+..                                     .....
T Consensus       205 ~el~tg~~p~~~~~---------~~~~~~~~~~~~~~~-------------------------------------~~~~~  238 (307)
T cd06607         205 IELAERKPPLFNMN---------AMSALYHIAQNDSPT-------------------------------------LSSND  238 (307)
T ss_pred             HHHHcCCCCCCCcc---------HHHHHHHHhcCCCCC-------------------------------------CCchh
Confidence            99999999995322         111111111000000                                     00112


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .+..+.+||.+||..||.+||++.+++.||||...
T Consensus       239 ~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  273 (307)
T cd06607         239 WSDYFRNFVDSCLQKIPQDRPSSEELLKHRFVLRE  273 (307)
T ss_pred             hCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccc
Confidence            45678999999999999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=1.2e-38  Score=312.00  Aligned_cols=247  Identities=24%  Similarity=0.398  Sum_probs=197.5

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|+++++||+|+||.||+|.+. ++..||+|.+.......+.+.+|+.+++++      +|+||+++++.+.    .
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   72 (261)
T cd05072           4 PRESIKLVKKLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTMSVQAFLEEANLMKTL------QHDKLVRLYAVVT----K   72 (261)
T ss_pred             chHHeEEeeecCCcCCceEEEEEec-CCceEEEEEccCCchhHHHHHHHHHHHHhC------CCCCeeeEEEEEc----C
Confidence            3578999999999999999999864 567799998876555567888999999998      7888999999987    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....++||||+ +++|.+++.......++...+..++.||+.||+|||++ |++||||||+||+++.             
T Consensus        73 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~-~i~H~dl~p~nili~~-------------  138 (261)
T cd05072          73 EEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK-NYIHRDLRAANVLVSE-------------  138 (261)
T ss_pred             CCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccchhhEEecC-------------
Confidence            46799999999 88999998765555688999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (261)
T cd05072         139 --------------------------------------------------------------------------------  138 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                             +..++|+|||.+......    .....++..|+|||++.+..++.++|||||||++|
T Consensus       139 -----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  195 (261)
T cd05072         139 -----------------------SLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLY  195 (261)
T ss_pred             -----------------------CCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHH
Confidence                                   456899999999754322    12234567899999998888999999999999999


Q ss_pred             HHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +|++ |..||....      .......+..   ..                                      .......
T Consensus       196 ~l~t~g~~p~~~~~------~~~~~~~~~~---~~--------------------------------------~~~~~~~  228 (261)
T cd05072         196 EIVTYGKIPYPGMS------NSDVMSALQR---GY--------------------------------------RMPRMEN  228 (261)
T ss_pred             HHHccCCCCCCCCC------HHHHHHHHHc---CC--------------------------------------CCCCCCC
Confidence            9998 999996432      1111111110   00                                      0011123


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+.++.+||.+||..||++||+++++++
T Consensus       229 ~~~~~~~li~~~l~~~p~~Rp~~~~i~~  256 (261)
T cd05072         229 CPDELYDIMKTCWKEKAEERPTFDYLQS  256 (261)
T ss_pred             CCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            4578899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-38  Score=315.28  Aligned_cols=253  Identities=25%  Similarity=0.417  Sum_probs=202.2

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .|++.+.||+|+||.||+|.+..+++.||+|++...  ......+.+|+.+++++.+.   .||||+++++++.    .+
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~---~~~~vi~~~~~~~----~~   74 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQS---QPPNITKYYGSYL----KG   74 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccC---CCCCeeeEeeeee----eC
Confidence            588899999999999999999999999999988653  23345678899999999642   5899999999987    45


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...|+||||+ +++|.+++..   ..+++..+..++.||+.||.|||+. ||+||||+|+||+++.              
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~-~i~H~dl~p~ni~i~~--------------  136 (277)
T cd06917          75 PRLWIIMEYAEGGSVRTLMKA---GPIAEKYISVIIREVLVALKYIHKV-GVIHRDIKAANILVTN--------------  136 (277)
T ss_pred             CEEEEEEecCCCCcHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcCHHHEEEcC--------------
Confidence            7899999999 8899988853   2589999999999999999999996 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (277)
T cd06917         137 --------------------------------------------------------------------------------  136 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~e  355 (530)
                                            .+.++|+|||.+......   .....|+..|+|||.+.+ ..++.++|+|||||++|+
T Consensus       137 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~  194 (277)
T cd06917         137 ----------------------TGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYE  194 (277)
T ss_pred             ----------------------CCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHH
Confidence                                  456899999998654322   334568999999999875 457899999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh-hc
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE-KD  434 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  434 (530)
                      |++|.+||.....         ...+.......+                                      ..+.. ..
T Consensus       195 ll~g~~p~~~~~~---------~~~~~~~~~~~~--------------------------------------~~~~~~~~  227 (277)
T cd06917         195 MATGNPPYSDVDA---------FRAMMLIPKSKP--------------------------------------PRLEDNGY  227 (277)
T ss_pred             HHhCCCCCCCCCh---------hhhhhccccCCC--------------------------------------CCCCcccC
Confidence            9999999964321         111100000000                                      00111 24


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +.++.+||.+||..||.+||++.+++.||||+...
T Consensus       228 ~~~~~~~i~~~l~~~p~~R~~~~~il~~~~~~~~~  262 (277)
T cd06917         228 SKLLREFVAACLDEEPKERLSAEELLKSKWIKAHS  262 (277)
T ss_pred             CHHHHHHHHHHcCCCcccCcCHHHHhhChHhhccc
Confidence            57899999999999999999999999999998654

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=3.5e-38  Score=308.96  Aligned_cols=250  Identities=30%  Similarity=0.457  Sum_probs=200.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++.+.||+|+||.||+|.+..+++.||+|+++....   ....+.+|+.+++++      .|+||+++++.+.    .
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l------~~~~i~~~~~~~~----~   70 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELL------KHPNLVKYYGVEV----H   70 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhC------CCCChhheeeeEe----c
Confidence            69999999999999999999999999999999876544   456778899999999      6788999999877    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ...+++|+||+ +++|.+++...  ..+++..+..++.|++.||.|||++ ||+|+||||+||+++.             
T Consensus        71 ~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~-~i~H~dl~~~nil~~~-------------  134 (264)
T cd06626          71 REKVYIFMEYCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAYLHSH-GIVHRDIKPANIFLDH-------------  134 (264)
T ss_pred             CCEEEEEEecCCCCcHHHHHhhc--CCCChHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEECC-------------
Confidence            57899999999 88999988643  3488999999999999999999997 9999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (264)
T cd06626         135 --------------------------------------------------------------------------------  134 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcCCC---CCCcchhHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLGSK---YSTPADLWS  348 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~~~---~~~~~DiWS  348 (530)
                                             ...++|+|||.+......       .....++..|+|||++.+..   ++.++||||
T Consensus       135 -----------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s  191 (264)
T cd06626         135 -----------------------NGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWS  191 (264)
T ss_pred             -----------------------CCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHH
Confidence                                   456999999998654322       11345788999999998766   889999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||....      ..  ......+....+..                                    .
T Consensus       192 ~G~il~~l~~g~~pf~~~~------~~--~~~~~~~~~~~~~~------------------------------------~  227 (264)
T cd06626         192 LGCVVLEMATGKRPWSELD------NE--FQIMFHVGAGHKPP------------------------------------I  227 (264)
T ss_pred             HHHHHHHHHhCCCCccCCc------ch--HHHHHHHhcCCCCC------------------------------------C
Confidence            9999999999999996432      11  11111111000000                                    0


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ......+..+.+||.+||+.||.+|||+.+++.|||+
T Consensus       228 ~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~~~~~  264 (264)
T cd06626         228 PDSLQLSPEGKDFLDRCLESDPKKRPTASELLQHPFV  264 (264)
T ss_pred             CcccccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            0011236778899999999999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=1.5e-38  Score=348.66  Aligned_cols=249  Identities=23%  Similarity=0.311  Sum_probs=194.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.++||+|+||.||+|++..+++.||||++....    .....+.+|+++++++      .||||+++++++.   
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L------~HPNIVkl~~v~~---   72 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADL------IHPGIVPVYSICS---   72 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhC------CCcCcCeEEEEEe---
Confidence            68999999999999999999999999999999887532    2345678899999999      7888999999988   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhc---------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYAD---------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~---------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                       .+...|+||||+ +++|.+++....         ...++...+..++.||+.||+|||++ ||+||||||+|||++.  
T Consensus        73 -d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~-GIIHRDLKPeNILLd~--  148 (932)
T PRK13184         73 -DGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK-GVLHRDLKPDNILLGL--  148 (932)
T ss_pred             -eCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC-CccccCCchheEEEcC--
Confidence             447899999999 899999886422         12255677889999999999999997 9999999999999955  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (932)
T PRK13184        149 --------------------------------------------------------------------------------  148 (932)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---------------------ccCCCCCC
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---------------------QFTNDIQT  326 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---------------------~~~~~~gt  326 (530)
                                                        ++.++|+|||++.....                     .....+||
T Consensus       149 ----------------------------------dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT  194 (932)
T PRK13184        149 ----------------------------------FGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGT  194 (932)
T ss_pred             ----------------------------------CCCEEEEecCcceecccccccccccccccccccccccccCCCCCCC
Confidence                                              45689999999865410                     01224799


Q ss_pred             CCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccccc
Q 045988          327 RQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH  406 (530)
Q Consensus       327 ~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  406 (530)
                      +.|+|||++.+..++.++|||||||++|+|++|.+||.......      .   .....-..|..               
T Consensus       195 ~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~k------i---~~~~~i~~P~~---------------  250 (932)
T PRK13184        195 PDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRK------I---SYRDVILSPIE---------------  250 (932)
T ss_pred             CCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhh------h---hhhhhccChhh---------------
Confidence            99999999999999999999999999999999999996432110      0   00000000000               


Q ss_pred             CccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                           .......++.+.+++.+||..||.+|++..+.|.+
T Consensus       251 ---------------------~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~  285 (932)
T PRK13184        251 ---------------------VAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQ  285 (932)
T ss_pred             ---------------------ccccccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                 00012446788999999999999999887666653

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=3.8e-38  Score=309.90  Aligned_cols=251  Identities=24%  Similarity=0.367  Sum_probs=195.4

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      .+.....||+|+||.||+|.+..++..||+|.+.... .....+.+|+.+++++      .|+||+++++++.    .+.
T Consensus         9 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~----~~~   78 (268)
T cd06624           9 ENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYL------KHRNIVQYLGSDS----ENG   78 (268)
T ss_pred             cCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhc------CCCCeeeeeeeec----cCC
Confidence            3344568999999999999999999999999876543 2345678999999998      7888999999988    457


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCC--CHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGV--PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l--~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ..++||||+ +++|.+++.... ..+  ++..+..++.||+.||+|||++ ||+||||||+|||++..            
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~h~dl~p~nil~~~~------------  144 (268)
T cd06624          79 FFKIFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHDN-QIVHRDIKGDNVLVNTY------------  144 (268)
T ss_pred             EEEEEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEEcCC------------
Confidence            899999999 889999886432 234  7888999999999999999997 99999999999999431            


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (268)
T cd06624         145 --------------------------------------------------------------------------------  144 (268)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCC--CCCcchhHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSK--YSTPADLWSFACIC  353 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~--~~~~~DiWSlG~il  353 (530)
                                             ...++|+|||.+.....   ......|++.|+|||++.+..  ++.++|||||||++
T Consensus       145 -----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl  201 (268)
T cd06624         145 -----------------------SGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTI  201 (268)
T ss_pred             -----------------------CCeEEEecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHH
Confidence                                   24689999999864321   122346789999999987644  78999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||.....     .....   ...                                     ........++..
T Consensus       202 ~~l~~g~~p~~~~~~-----~~~~~---~~~-------------------------------------~~~~~~~~~~~~  236 (268)
T cd06624         202 VEMATGKPPFIELGE-----PQAAM---FKV-------------------------------------GMFKIHPEIPES  236 (268)
T ss_pred             HHHHhCCCCCccccC-----hhhhH---hhh-------------------------------------hhhccCCCCCcc
Confidence            999999999953210     00000   000                                     000001123344


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .++++.+|+.+||+.+|.+|||+.|++.||||
T Consensus       237 ~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  268 (268)
T cd06624         237 LSAEAKNFILRCFEPDPDKRASAHDLLQDPFL  268 (268)
T ss_pred             cCHHHHHHHHHHcCCCchhCCCHHHHHhCCCC
Confidence            56789999999999999999999999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=7.3e-39  Score=320.26  Aligned_cols=252  Identities=25%  Similarity=0.410  Sum_probs=201.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      -|....+||+|+||.||+|.+..+++.||||++.... ...+.+.+|+.+++.+      .||||+++++.|.    .+.
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~hp~i~~~~~~~~----~~~   91 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDY------QHQNVVEMYKSYL----VGE   91 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhC------CCCchhhhhhhee----eCC
Confidence            4556678999999999999999999999999876532 3345677899999888      7888999999988    457


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ..|+||||+ +++|..++..   ..+++..+..++.||+.||.|||++ ||+||||||+|||++.               
T Consensus        92 ~~~iv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~-~ivH~dl~p~Nill~~---------------  152 (297)
T cd06659          92 ELWVLMEFLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQ-GVIHRDIKSDSILLTL---------------  152 (297)
T ss_pred             eEEEEEecCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHeEEcc---------------
Confidence            899999999 7888887643   3489999999999999999999997 9999999999999954               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (297)
T cd06659         153 --------------------------------------------------------------------------------  152 (297)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                           ++.++|+|||++.....   ......|+..|+|||++.+..++.++|||||||++|+|+
T Consensus       153 ---------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~  211 (297)
T cd06659         153 ---------------------DGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMV  211 (297)
T ss_pred             ---------------------CCcEEEeechhHhhcccccccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence                                 45799999999864322   223457899999999999888999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|..||....      ....+.   .+.+..+.                                    ........+..
T Consensus       212 ~g~~p~~~~~------~~~~~~---~~~~~~~~------------------------------------~~~~~~~~~~~  246 (297)
T cd06659         212 DGEPPYFSDS------PVQAMK---RLRDSPPP------------------------------------KLKNAHKISPV  246 (297)
T ss_pred             hCCCCCCCCC------HHHHHH---HHhccCCC------------------------------------CccccCCCCHH
Confidence            9999995322      111111   11111000                                    00111234567


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +.+||.+||+.+|.+||++.++++||||....
T Consensus       247 l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~~~  278 (297)
T cd06659         247 LRDFLERMLTREPQERATAQELLDHPFLLQTG  278 (297)
T ss_pred             HHHHHHHHhcCCcccCcCHHHHhhChhhccCC
Confidence            89999999999999999999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=3.1e-38  Score=309.19  Aligned_cols=253  Identities=30%  Similarity=0.444  Sum_probs=206.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....  .....+.+|+.++.++      .|+||+++++.+.    .
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~   70 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSC------ESPYVVKCYGAFY----K   70 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhc------CCCCeeeEEEEEc----c
Confidence            36899999999999999999999999999999887654  2456788899999998      6888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR-ELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~-~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....++||||+ +++|.+++...  ..+++..+..++.||+.||+|||+ . |++||||+|+||+++.            
T Consensus        71 ~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~~-~~~H~~l~~~ni~~~~------------  135 (264)
T cd06623          71 EGEISIVLEYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHTKR-HIIHRDIKPSNLLINS------------  135 (264)
T ss_pred             CCeEEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhccC-CCccCCCCHHHEEECC------------
Confidence            47899999999 79999998754  458999999999999999999999 8 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (264)
T cd06623         136 --------------------------------------------------------------------------------  135 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc---CCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF---TNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~---~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                              +..++|+|||.+.......   ....++..|+|||.+.+..++.++|+|||||++|
T Consensus       136 ------------------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~  191 (264)
T cd06623         136 ------------------------KGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLL  191 (264)
T ss_pred             ------------------------CCCEEEccCccceecccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHH
Confidence                                    4568999999987543221   2346788999999999888999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh-
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK-  433 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  433 (530)
                      +|++|.+||.....      ......+..+....                                      ....+.. 
T Consensus       192 ~l~tg~~p~~~~~~------~~~~~~~~~~~~~~--------------------------------------~~~~~~~~  227 (264)
T cd06623         192 ECALGKFPFLPPGQ------PSFFELMQAICDGP--------------------------------------PPSLPAEE  227 (264)
T ss_pred             HHHhCCCCCccccc------cCHHHHHHHHhcCC--------------------------------------CCCCCccc
Confidence            99999999964331      01111111111100                                      0111223 


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      .+..+.+||.+||..+|.+||++.++|+||||+.
T Consensus       228 ~~~~l~~li~~~l~~~p~~R~~~~~ll~~~~~~~  261 (264)
T cd06623         228 FSPEFRDFISACLQKDPKKRPSAAELLQHPFIKK  261 (264)
T ss_pred             CCHHHHHHHHHHccCChhhCCCHHHHHhCHHHHh
Confidence            5678999999999999999999999999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.4e-38  Score=309.25  Aligned_cols=244  Identities=24%  Similarity=0.383  Sum_probs=193.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      .+|++.+.||+|+||.||+|..+. +..+|+|.+.........+.+|+.+|+++      +||||+++++++.    ...
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~-~~~~a~K~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~~~   72 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRA-QIKVAIKAINEGAMSEEDFIEEAKVMMKL------SHPKLVQLYGVCT----QQK   72 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEecc-CceEEEEecccCCccHHHHHHHHHHHHHC------CCCCceeEEEEEc----cCC
Confidence            579999999999999999998654 56799998876655567788999999999      7888999999987    446


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ..++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+||+++.               
T Consensus        73 ~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~ni~i~~---------------  135 (256)
T cd05114          73 PLYIVTEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERN-SFIHRDLAARNCLVSS---------------  135 (256)
T ss_pred             CEEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHC-CccccccCcceEEEcC---------------
Confidence            899999999 889999886432 3488999999999999999999997 9999999999999954               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (256)
T cd05114         136 --------------------------------------------------------------------------------  135 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                           +..++|+|||.+......    .....++..|+|||++.+..++.++|||||||++|+|
T Consensus       136 ---------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el  194 (256)
T cd05114         136 ---------------------TGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEV  194 (256)
T ss_pred             ---------------------CCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHH
Confidence                                 456899999988653211    1222345679999999988899999999999999999


Q ss_pred             Hh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          357 AT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       357 lt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      ++ |.+||....      ....+..+..  +.                                       ....+...+
T Consensus       195 ~~~g~~p~~~~~------~~~~~~~i~~--~~---------------------------------------~~~~~~~~~  227 (256)
T cd05114         195 FTEGKMPFEKKS------NYEVVEMISR--GF---------------------------------------RLYRPKLAS  227 (256)
T ss_pred             HcCCCCCCCCCC------HHHHHHHHHC--CC---------------------------------------CCCCCCCCC
Confidence            99 899995432      1111211110  00                                       001122235


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ..+.+||.+||..||.+||++.++++
T Consensus       228 ~~~~~li~~c~~~~p~~Rps~~~l~~  253 (256)
T cd05114         228 MTVYEVMYSCWHEKPEGRPTFAELLR  253 (256)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHH
Confidence            67899999999999999999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=2.5e-38  Score=314.78  Aligned_cols=253  Identities=23%  Similarity=0.377  Sum_probs=195.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .++|++.++||+|+||.||+|..+.     .+..||+|++.....  ....+.+|+.+++.+      +|+||+++++++
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~   78 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF------TCHHVVRLLGVV   78 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhC------CCCCeeeEEEEE
Confidence            5799999999999999999997653     356899998765432  233567889999888      788899999998


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                      .    .....|+||||+ +++|.+++.....        ...+...+..++.||+.||.|||++ ||+||||||+|||++
T Consensus        79 ~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dikp~nili~  153 (288)
T cd05061          79 S----KGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK-KFVHRDLAARNCMVA  153 (288)
T ss_pred             c----CCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CCcCCCCChheEEEc
Confidence            7    446799999999 8999999965321        2246678899999999999999997 999999999999995


Q ss_pred             eccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 045988          185 SMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVE  264 (530)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (530)
                      .                                                                               
T Consensus       154 ~-------------------------------------------------------------------------------  154 (288)
T cd05061         154 H-------------------------------------------------------------------------------  154 (288)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            4                                                                               


Q ss_pred             cccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCC
Q 045988          265 DQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                           +..++|+|||++......     .....++..|+|||.+.+..
T Consensus       155 -------------------------------------~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~  197 (288)
T cd05061         155 -------------------------------------DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGV  197 (288)
T ss_pred             -------------------------------------CCcEEECcCCccccccccccccccCCCcccccccCHHHhccCC
Confidence                                                 456899999998643221     12234567899999999888


Q ss_pred             CCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccC
Q 045988          340 YSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       340 ~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (530)
                      ++.++|||||||++|+|++ |.+||.+..      ..+....+..  +                                
T Consensus       198 ~~~~~DvwslG~~l~el~~~~~~p~~~~~------~~~~~~~~~~--~--------------------------------  237 (288)
T cd05061         198 FTTSSDMWSFGVVLWEITSLAEQPYQGLS------NEQVLKFVMD--G--------------------------------  237 (288)
T ss_pred             CChHhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C--------------------------------
Confidence            9999999999999999998 788996432      1111111100  0                                


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc------CCCCCC
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT------HPWINV  467 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~------hp~f~~  467 (530)
                             .....+...++.+.+||.+||+.||.+|||+.++++      ||||..
T Consensus       238 -------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~  285 (288)
T cd05061         238 -------GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPE  285 (288)
T ss_pred             -------CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCC
Confidence                   000112234578999999999999999999999987      999974

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=9.4e-39  Score=316.70  Aligned_cols=248  Identities=22%  Similarity=0.345  Sum_probs=197.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCC-----eEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTS-----HYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~-----~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .++|++.+.||+|+||.||+|.+...+     ..||+|.++...  .....+.+|+.+++++      .||||+++++++
T Consensus         4 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l------~h~~i~~~~~~~   77 (283)
T cd05048           4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDL------QHPNIVCLLGVC   77 (283)
T ss_pred             hHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhc------CCcccceEEEEE
Confidence            357999999999999999999876554     789999886543  2345678899999998      788899999998


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                      .    .....|++|||+ +++|.+++.....              ..+++..+..++.||+.||.|||++ ||+||||||
T Consensus        78 ~----~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~-~i~H~dlkp  152 (283)
T cd05048          78 T----KEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH-HFVHRDLAA  152 (283)
T ss_pred             c----CCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC-Ceecccccc
Confidence            8    446789999999 8899999875321              3478899999999999999999997 999999999


Q ss_pred             CcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 045988          179 ENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEP  258 (530)
Q Consensus       179 ~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (530)
                      +|||++.                                                                         
T Consensus       153 ~Nil~~~-------------------------------------------------------------------------  159 (283)
T cd05048         153 RNCLVGE-------------------------------------------------------------------------  159 (283)
T ss_pred             ceEEEcC-------------------------------------------------------------------------
Confidence            9999954                                                                         


Q ss_pred             CCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCCh
Q 045988          259 NGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPE  333 (530)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE  333 (530)
                                                                 +..++|+|||++.....     ......+++.|+|||
T Consensus       160 -------------------------------------------~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  196 (283)
T cd05048         160 -------------------------------------------GLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPE  196 (283)
T ss_pred             -------------------------------------------CCcEEECCCcceeeccccccccccCCCcccccccCHH
Confidence                                                       45699999999865322     123445688899999


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccc
Q 045988          334 VLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI  412 (530)
Q Consensus       334 ~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  412 (530)
                      .+.+..++.++|||||||++|+|++ |..||.+.+.      .+....+..  +.                         
T Consensus       197 ~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~------~~~~~~i~~--~~-------------------------  243 (283)
T cd05048         197 AILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSN------QEVIEMIRS--RQ-------------------------  243 (283)
T ss_pred             HhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCH------HHHHHHHHc--CC-------------------------
Confidence            9998889999999999999999998 9999965431      111111100  00                         


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                    ....+...+..+.+|+.+||..||.+||++.|++++
T Consensus       244 --------------~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~  279 (283)
T cd05048         244 --------------LLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTR  279 (283)
T ss_pred             --------------cCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                          011233557889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=2.5e-38  Score=310.43  Aligned_cols=245  Identities=24%  Similarity=0.381  Sum_probs=194.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.++||+|+||+||+|.+..++ .||+|+++......+.+.+|+.+++++      .|+||+++++.+..     
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~-~valK~~~~~~~~~~~~~~E~~~l~~l------~~~~i~~~~~~~~~-----   72 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNGTT-RVAIKTLKPGTMSPEAFLQEAQVMKKL------RHEKLVQLYAVVSE-----   72 (262)
T ss_pred             hHHeeEeeecCCCCCCcEEEEEecCCc-eEEEEecccCccCHHHHHHHHHHHHhC------CCCCcceEEEEECC-----
Confidence            578999999999999999999876654 599999887655566788999999998      68889999987652     


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.              
T Consensus        73 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~-~i~H~dl~p~Nill~~--------------  137 (262)
T cd05071          73 EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILVGE--------------  137 (262)
T ss_pred             CCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC-CccccccCcccEEEcC--------------
Confidence            4579999999 78999999754444588999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (262)
T cd05071         138 --------------------------------------------------------------------------------  137 (262)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc----CCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF----TNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~----~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                            +..++|+|||.+.......    ....++..|+|||++.+..++.++|||||||++|+
T Consensus       138 ----------------------~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e  195 (262)
T cd05071         138 ----------------------NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  195 (262)
T ss_pred             ----------------------CCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHH
Confidence                                  4568999999986533221    12345678999999988889999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          356 LAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       356 llt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |++ |.+||....      .......+.   ...                                      ....+...
T Consensus       196 llt~g~~p~~~~~------~~~~~~~~~---~~~--------------------------------------~~~~~~~~  228 (262)
T cd05071         196 LTTKGRVPYPGMV------NREVLDQVE---RGY--------------------------------------RMPCPPEC  228 (262)
T ss_pred             HHcCCCCCCCCCC------hHHHHHHHh---cCC--------------------------------------CCCCcccc
Confidence            999 888996432      111111110   000                                      00112345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +..+.+||.+||+.||.+||++.++++
T Consensus       229 ~~~l~~li~~~l~~~p~~Rp~~~~~~~  255 (262)
T cd05071         229 PESLHDLMCQCWRKEPEERPTFEYLQA  255 (262)
T ss_pred             CHHHHHHHHHHccCCcccCCCHHHHHH
Confidence            678899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-39  Score=335.06  Aligned_cols=262  Identities=26%  Similarity=0.407  Sum_probs=225.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC-CC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG-PN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~-~~  119 (530)
                      .+.|.|.+.||.|.||.||+++++.+++.+|+||........+....|.+||+.+.     +|||++.++++|.-.. ..
T Consensus        18 ~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~-----~hpnv~~fyg~~~k~~~~~   92 (953)
T KOG0587|consen   18 ADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYS-----HHPNVATFYGAFIKKDPGN   92 (953)
T ss_pred             CCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhcc-----CCCCcceEEEEEEEecCCC
Confidence            57899999999999999999999999999999999988777888888999999886     8999999999987543 35


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ++.+||||||| +|+.-++++......+.+..+..|++.++.||.+||.+ .++|||||-.|||++.             
T Consensus        93 ~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~n-kviHRDikG~NiLLT~-------------  158 (953)
T KOG0587|consen   93 GDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNN-KVIHRDIKGQNVLLTE-------------  158 (953)
T ss_pred             CCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhc-ceeeecccCceEEEec-------------
Confidence            68999999999 99999999887777799999999999999999999998 9999999999999977             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (953)
T KOG0587|consen  159 --------------------------------------------------------------------------------  158 (953)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-----CCCCcchhHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-----KYSTPADLWSFA  350 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-----~~~~~~DiWSlG  350 (530)
                                             ++.|||+|||.+.....   ...+++|||+|||||++...     .|+..+|+||||
T Consensus       159 -----------------------e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLG  215 (953)
T KOG0587|consen  159 -----------------------NAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLG  215 (953)
T ss_pred             -----------------------cCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhcc
Confidence                                   57899999999976443   35678999999999999743     378889999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      ++..||..|.+|+.         +..-+..++.+...+|..+                                    .-
T Consensus       216 ITaIEladG~PPl~---------DmHPmraLF~IpRNPPPkL------------------------------------kr  250 (953)
T KOG0587|consen  216 ITAIEMAEGAPPLC---------DMHPMRALFLIPRNPPPKL------------------------------------KR  250 (953)
T ss_pred             ceeehhcCCCCCcc---------CcchhhhhccCCCCCCccc------------------------------------cc
Confidence            99999999999994         4445555555555555432                                    12


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +...+..+.+||..||..|-.+||+..++|.|||+++.+
T Consensus       251 p~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~hpFi~e~~  289 (953)
T KOG0587|consen  251 PKKWSKKFNDFISTCLVKDYEQRPSTEELLKHPFITEQP  289 (953)
T ss_pred             hhhHHHHHHHHHHHHHhhccccCcchhhhccCCcccccc
Confidence            345578899999999999999999999999999999554

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.9e-39  Score=326.48  Aligned_cols=253  Identities=23%  Similarity=0.382  Sum_probs=201.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .-|..++.||-|+||.|.+++...|...||+|.+.+.+.    ....+..|-.||...      +.+.||++|..|+   
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEA------Dn~WVVrLyySFQ---  699 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEA------DNEWVVRLYYSFQ---  699 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhc------CCcceEEEEEEec---
Confidence            458899999999999999999999999999998877542    234566788888887      8889999999999   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       +.+.+|+||+|+ ||++..++....  -|.++.+++++..|..|+++.|. +|+|||||||+||||+.           
T Consensus       700 -DkdnLYFVMdYIPGGDmMSLLIrmg--IFeE~LARFYIAEltcAiesVHk-mGFIHRDiKPDNILIDr-----------  764 (1034)
T KOG0608|consen  700 -DKDNLYFVMDYIPGGDMMSLLIRMG--IFEEDLARFYIAELTCAIESVHK-MGFIHRDIKPDNILIDR-----------  764 (1034)
T ss_pred             -cCCceEEEEeccCCccHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHh-ccceecccCccceEEcc-----------
Confidence             558999999999 999999886443  48999999999999999999998 69999999999999976           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       765 --------------------------------------------------------------------------------  764 (1034)
T KOG0608|consen  765 --------------------------------------------------------------------------------  764 (1034)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccc---cc-----cc-----------------------------
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACW---TY-----KQ-----------------------------  319 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~---~~-----~~-----------------------------  319 (530)
                                               ++.+||.|||++.-   ..     +.                             
T Consensus       765 -------------------------dGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra  819 (1034)
T KOG0608|consen  765 -------------------------DGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRA  819 (1034)
T ss_pred             -------------------------CCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHH
Confidence                                     67899999998831   00     00                             


Q ss_pred             --------cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchh
Q 045988          320 --------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRK  391 (530)
Q Consensus       320 --------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~  391 (530)
                              ....+||+.|+|||++....|+..+|+||.|||||||+.|++||-..++.+-.     .             
T Consensus       820 ~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq-----~-------------  881 (1034)
T KOG0608|consen  820 MRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQ-----Y-------------  881 (1034)
T ss_pred             HhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcce-----e-------------
Confidence                    11237999999999999999999999999999999999999999755532210     0             


Q ss_pred             hhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcC---HHHHhcCCCCCCC
Q 045988          392 IAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPT---AAQCLTHPWINVG  468 (530)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpt---a~elL~hp~f~~~  468 (530)
                             .         ...|+..          -.+......++++.+||.++ +.+++.|..   ++|+-.||||+.-
T Consensus       882 -------k---------v~nw~~~----------l~~~~~~~ls~e~~~li~kL-c~sad~RLGkng~d~vKaHpfFkgI  934 (1034)
T KOG0608|consen  882 -------K---------VINWRNF----------LHIPYQGNLSKEALDLIQKL-CCSADSRLGKNGADQVKAHPFFKGI  934 (1034)
T ss_pred             -------e---------eeehhhc----------cccccccccCHHHHHHHHHH-hcChhhhhcccchhhhhcCcccccc
Confidence                   0         0000000          01122345688999999985 667999985   7889999999853

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-38  Score=307.97  Aligned_cols=250  Identities=26%  Similarity=0.403  Sum_probs=200.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc------ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA------QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~------~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .+|.+.+.||+|+||.||+|++..+++.||+|++...      ......+.+|+.+++++      .|+||+++++.+..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l------~h~~i~~~~~~~~~   75 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNL------RHDRIVQYYGCLRD   75 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHc------CCCCcceEEEEEEc
Confidence            4799999999999999999999999999999986532      12234677899999999      78889999998875


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                      .  .+..+++||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+|+||||+||+++.         
T Consensus        76 ~--~~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~al~~LH~~-~i~H~dl~p~ni~i~~---------  141 (264)
T cd06653          76 P--EEKKLSIFVEYMPGGSIKDQLKAY--GALTENVTRRYTRQILQGVSYLHSN-MIVHRDIKGANILRDS---------  141 (264)
T ss_pred             C--CCCEEEEEEEeCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEcC---------
Confidence            3  346789999999 78999888643  3488999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (264)
T cd06653         142 --------------------------------------------------------------------------------  141 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 +..++|+|||++.....      ......|+..|+|||++.+..++.++|+||
T Consensus       142 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  194 (264)
T cd06653         142 ---------------------------AGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWS  194 (264)
T ss_pred             ---------------------------CCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHH
Confidence                                       35689999999865321      123346889999999999888999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||...         .....+........                                     ..
T Consensus       195 lG~il~~l~~g~~p~~~~---------~~~~~~~~~~~~~~-------------------------------------~~  228 (264)
T cd06653         195 VACTVVEMLTEKPPWAEY---------EAMAAIFKIATQPT-------------------------------------KP  228 (264)
T ss_pred             HHHHHHHHHhCCCCCCcc---------CHHHHHHHHHcCCC-------------------------------------CC
Confidence            999999999999999532         22222222221110                                     01


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .++...++.+.+||.+||. +|.+||++.++|.|||.
T Consensus       229 ~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~~~~~  264 (264)
T cd06653         229 MLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLRHPFV  264 (264)
T ss_pred             CCCcccCHHHHHHHHHHhc-CcccCccHHHHhcCCCC
Confidence            2344567889999999999 57999999999999994

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=2.8e-38  Score=312.65  Aligned_cols=251  Identities=19%  Similarity=0.287  Sum_probs=196.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .++|.+.+.||+|+||.||+|.+..     ++..||+|.+....  .....+.+|+.+++.+      +|+||+++++++
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~   78 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKF------NHQNIVRLIGVS   78 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEE
Confidence            5689999999999999999999877     78899999876432  2234678899999998      788899999988


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADY-----RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~-----~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      ..    ....++||||+ +++|.+++.....     ..+++..+..++.||+.||+|||++ +++||||||+|||++...
T Consensus        79 ~~----~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~nil~~~~~  153 (277)
T cd05036          79 FE----RLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN-HFIHRDIAARNCLLTCKG  153 (277)
T ss_pred             cc----CCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccchheEEEeccC
Confidence            74    45789999999 8999999875432     2488999999999999999999997 999999999999996421


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                      +                                                                               
T Consensus       154 ~-------------------------------------------------------------------------------  154 (277)
T cd05036         154 P-------------------------------------------------------------------------------  154 (277)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCC
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYST  342 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~  342 (530)
                                                        ...++|+|||++......     ......+..|+|||++.+..++.
T Consensus       155 ----------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  200 (277)
T cd05036         155 ----------------------------------GRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTS  200 (277)
T ss_pred             ----------------------------------CcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCc
Confidence                                              235899999999754221     11223356799999999888999


Q ss_pred             cchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCch
Q 045988          343 PADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       343 ~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      ++|||||||++|+|++ |..||.....      .. +..+  +.+..                                 
T Consensus       201 ~~DiwslG~il~el~~~g~~pf~~~~~------~~-~~~~--~~~~~---------------------------------  238 (277)
T cd05036         201 KTDVWSFGVLLWEIFSLGYMPYPGRTN------QE-VMEF--VTGGG---------------------------------  238 (277)
T ss_pred             hhHHHHHHHHHHHHHcCCCCCCCCCCH------HH-HHHH--HHcCC---------------------------------
Confidence            9999999999999997 9999964331      11 1111  11000                                 


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                           ....+...+..+.+|+.+||+.||++||++.++|+|
T Consensus       239 -----~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~  274 (277)
T cd05036         239 -----RLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILER  274 (277)
T ss_pred             -----cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                 011223446788999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=3.5e-38  Score=308.80  Aligned_cols=245  Identities=22%  Similarity=0.390  Sum_probs=197.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|+++++||+|+||.||+|... +++.||+|.+.........+.+|+.+++++      +|+||+++++++..     
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~-~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~-----   72 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYN-GHTKVAIKSLKQGSMSPEAFLAEANLMKQL------QHPRLVRLYAVVTQ-----   72 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecC-CCceEEEEEecCCCCcHHHHHHHHHHHHhc------CCcCeeeEEEEEcc-----
Confidence            578999999999999999999854 567899999887666667889999999999      78889999988652     


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...++||||+ +++|.+++.......++...+..++.|++.||+|||+. ||+||||||+||+++.              
T Consensus        73 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~-~i~H~dl~p~ni~i~~--------------  137 (260)
T cd05067          73 EPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK-NYIHRDLRAANILVSE--------------  137 (260)
T ss_pred             CCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC-CeecccccHHhEEEcC--------------
Confidence            4689999999 88999998765555689999999999999999999996 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (260)
T cd05067         138 --------------------------------------------------------------------------------  137 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                            +..++|+|||.+......    .....++..|+|||++.+..++.++|||||||++|+
T Consensus       138 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~e  195 (260)
T cd05067         138 ----------------------TLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTE  195 (260)
T ss_pred             ----------------------CCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHH
Confidence                                  456999999998654311    123345678999999998889999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          356 LAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       356 llt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |++ |.+||...+      .......+....                                         ....+...
T Consensus       196 l~~~g~~p~~~~~------~~~~~~~~~~~~-----------------------------------------~~~~~~~~  228 (260)
T cd05067         196 IVTYGRIPYPGMT------NPEVIQNLERGY-----------------------------------------RMPRPDNC  228 (260)
T ss_pred             HHhCCCCCCCCCC------hHHHHHHHHcCC-----------------------------------------CCCCCCCC
Confidence            998 999996433      111111111000                                         00112334


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +.++.+||.+||..||.+||++++++.
T Consensus       229 ~~~~~~li~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05067         229 PEELYELMRLCWKEKPEERPTFEYLRS  255 (260)
T ss_pred             CHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            578999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=1.1e-38  Score=315.47  Aligned_cols=247  Identities=23%  Similarity=0.350  Sum_probs=196.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .++|.+.+.||+|+||.||+|.+..     +++.||||+++....  ....+.+|+++|+.+      .|+||+++++++
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~   77 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNF------QHENIVKFYGVC   77 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhc------CCCCchheeeEE
Confidence            4679999999999999999998743     368899999876533  246788999999999      788899999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhc------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYAD------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                      ..    ....++||||+ +++|.+++....            ...+++..+..++.||+.||.|||++ ||+||||||+|
T Consensus        78 ~~----~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~-~i~h~dlkp~n  152 (280)
T cd05049          78 TE----GDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ-HFVHRDLATRN  152 (280)
T ss_pred             ec----CCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC-Ceeccccccce
Confidence            84    47899999999 899999986532            13478889999999999999999997 99999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      ||++.                                                                           
T Consensus       153 ili~~---------------------------------------------------------------------------  157 (280)
T cd05049         153 CLVGY---------------------------------------------------------------------------  157 (280)
T ss_pred             EEEcC---------------------------------------------------------------------------
Confidence            99955                                                                           


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhh
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVL  335 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l  335 (530)
                                                               +..++|+|||.+......     .....+++.|+|||++
T Consensus       158 -----------------------------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (280)
T cd05049         158 -----------------------------------------DLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESI  196 (280)
T ss_pred             -----------------------------------------CCeEEECCcccceecccCcceecCCCCcccceecChhhh
Confidence                                                     467999999998643211     2233457789999999


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchh
Q 045988          336 LGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR  414 (530)
Q Consensus       336 ~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  414 (530)
                      .+..++.++|||||||++|+|++ |..||....      .......+.  .|..                          
T Consensus       197 ~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~------~~~~~~~~~--~~~~--------------------------  242 (280)
T cd05049         197 MYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLS------NEEVIECIT--QGRL--------------------------  242 (280)
T ss_pred             ccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHH--cCCc--------------------------
Confidence            99899999999999999999998 999995432      111111111  0000                          


Q ss_pred             cccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                   ...+...+..+.+||.+||..||.+||++.|++.
T Consensus       243 -------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  276 (280)
T cd05049         243 -------------LQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHE  276 (280)
T ss_pred             -------------CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                         0112234678999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=4.7e-38  Score=312.47  Aligned_cols=254  Identities=25%  Similarity=0.408  Sum_probs=202.3

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ..|...++||+|++|.||++.+..+++.||||.+.... ...+.+.+|+.+++.+      .|+||+++++++.    ..
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~------~h~~vv~~~~~~~----~~   88 (285)
T cd06648          19 SYLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDY------QHPNIVEMYSSYL----VG   88 (285)
T ss_pred             HhhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHc------CCCChheEEEEEE----cC
Confidence            35666789999999999999999999999999876433 2244578899999998      7888999999988    45


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      .+.|+||||+ +++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+||+++.              
T Consensus        89 ~~~~~v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~-~i~H~dl~p~Nil~~~--------------  150 (285)
T cd06648          89 DELWVVMEFLEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLHAQ-GVIHRDIKSDSILLTS--------------  150 (285)
T ss_pred             CeEEEEEeccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCChhhEEEcC--------------
Confidence            7899999999 8899998864   3489999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (285)
T cd06648         151 --------------------------------------------------------------------------------  150 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            ++.++|+|||.+......   .....|++.|+|||++.+..++.++|||||||++|+|
T Consensus       151 ----------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~el  208 (285)
T cd06648         151 ----------------------DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEM  208 (285)
T ss_pred             ----------------------CCcEEEcccccchhhccCCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHH
Confidence                                  457999999987543221   2334689999999999888899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||....      ....+.   .+....+.                                    ........+.
T Consensus       209 l~g~~p~~~~~------~~~~~~---~~~~~~~~------------------------------------~~~~~~~~~~  243 (285)
T cd06648         209 VDGEPPYFNEP------PLQAMK---RIRDNLPP------------------------------------KLKNLHKVSP  243 (285)
T ss_pred             HhCCCCCcCCC------HHHHHH---HHHhcCCC------------------------------------CCcccccCCH
Confidence            99999995322      111111   11110000                                    0001122457


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .+.+||.+||+.||.+||++.++|+||||+....
T Consensus       244 ~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~~  277 (285)
T cd06648         244 RLRSFLDRMLVRDPAQRATAAELLNHPFLAKAGP  277 (285)
T ss_pred             HHHHHHHHHcccChhhCcCHHHHccCcccccCCC
Confidence            8999999999999999999999999999987543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=4e-39  Score=318.54  Aligned_cols=249  Identities=29%  Similarity=0.391  Sum_probs=200.0

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..|++.+.||+|+||.||+|.+..++..||+|++....  .....+.+|+.+++++      .|+||+++++.+.    .
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   73 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYITRYYGSYL----K   73 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcC------CCCccHhhhcccc----c
Confidence            45777889999999999999999999999999887442  3345678899999988      7888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +...|+||||+ +++|.+++..   ..+++..+..++.||+.||.|||++ ||+|+||+|+||++..             
T Consensus        74 ~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~-~ivH~dl~p~ni~i~~-------------  136 (277)
T cd06642          74 GTKLWIIMEYLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHSE-RKIHRDIKAANVLLSE-------------  136 (277)
T ss_pred             CCceEEEEEccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhcC-CeeccCCChheEEEeC-------------
Confidence            57899999999 7889888753   4589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (277)
T cd06642         137 --------------------------------------------------------------------------------  136 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             ++.++|+|||++......   .....|+..|+|||++.+..++.++|+|||||++|+
T Consensus       137 -----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e  193 (277)
T cd06642         137 -----------------------QGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIE  193 (277)
T ss_pred             -----------------------CCCEEEccccccccccCcchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHH
Confidence                                   456899999998653322   223467889999999998889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||......      ....   .+....                                      ........+
T Consensus       194 l~tg~~p~~~~~~~------~~~~---~~~~~~--------------------------------------~~~~~~~~~  226 (277)
T cd06642         194 LAKGEPPNSDLHPM------RVLF---LIPKNS--------------------------------------PPTLEGQYS  226 (277)
T ss_pred             HHhCCCCCcccchh------hHHh---hhhcCC--------------------------------------CCCCCcccC
Confidence            99999999532210      0000   000000                                      001122345


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      ..+.+||.+||..+|.+||++.++|+||||..
T Consensus       227 ~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~  258 (277)
T cd06642         227 KPFKEFVEACLNKDPRFRPTAKELLKHKFITR  258 (277)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHHhHHHHH
Confidence            77899999999999999999999999999974

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=3.4e-38  Score=311.96  Aligned_cols=249  Identities=29%  Similarity=0.394  Sum_probs=200.3

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      -|++.++||+|+||.||+|.+..++..||||++....  .....+.+|+.+++++      .||||+++++.+.    .+
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~----~~   74 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYVTKYYGSYL----KD   74 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhc------CCCCEeEEEEEEE----eC
Confidence            4788999999999999999999999999999876432  2335677899999988      7888999999998    45


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...|+||||+ +++|..++..   ..+++..+..++.||+.||.|||++ ||+|+||||+||+++.              
T Consensus        75 ~~~~lv~e~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~dl~p~Ni~i~~--------------  136 (277)
T cd06641          75 TKLWIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLLSE--------------  136 (277)
T ss_pred             CeEEEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHccC-CeecCCCCHHhEEECC--------------
Confidence            7899999999 7889888753   3489999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (277)
T cd06641         137 --------------------------------------------------------------------------------  136 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            ++.++|+|||++......   .....++..|+|||.+.+..++.++|+|||||++|+|
T Consensus       137 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l  194 (277)
T cd06641         137 ----------------------HGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL  194 (277)
T ss_pred             ----------------------CCCEEEeecccceecccchhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHH
Confidence                                  456899999998653321   2334678899999999888889999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||....      .......   +....                                      ...+....+.
T Consensus       195 ~~g~~p~~~~~------~~~~~~~---~~~~~--------------------------------------~~~~~~~~~~  227 (277)
T cd06641         195 AKGEPPHSELH------PMKVLFL---IPKNN--------------------------------------PPTLEGNYSK  227 (277)
T ss_pred             HcCCCCCCccc------hHHHHHH---HhcCC--------------------------------------CCCCCcccCH
Confidence            99999995322      1111110   00000                                      0012234467


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ++.++|.+||+.+|.+||++.++++||||...
T Consensus       228 ~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~~~~  259 (277)
T cd06641         228 PLKEFVEACLNKEPSFRPTAKELLKHKFIVRF  259 (277)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHhCHHHhhh
Confidence            88999999999999999999999999999853

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=3e-38  Score=309.21  Aligned_cols=245  Identities=24%  Similarity=0.396  Sum_probs=195.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.++||+|+||.||+|.+. ++..||+|.+.......+.+.+|+.+++++      +|+||+++++++..     
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~-~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l------~~~~i~~~~~~~~~-----   72 (260)
T cd05070           5 RESLQLIKKLGNGQFGEVWMGTWN-GNTKVAVKTLKPGTMSPESFLEEAQIMKKL------RHDKLVQLYAVVSE-----   72 (260)
T ss_pred             hHHhhhhheeccccCceEEEEEec-CCceeEEEEecCCCCCHHHHHHHHHHHHhc------CCCceEEEEeEECC-----
Confidence            568999999999999999999765 566799999887655567789999999999      78889999988752     


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.              
T Consensus        73 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~di~p~Nili~~--------------  137 (260)
T cd05070          73 EPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM-NYIHRDLRSANILVGD--------------  137 (260)
T ss_pred             CCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCccceEEEeC--------------
Confidence            3578999999 88999998765555689999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (260)
T cd05070         138 --------------------------------------------------------------------------------  137 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                            +..++|+|||.+......    .....++..|+|||++.+..++.++|||||||++|+
T Consensus       138 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  195 (260)
T cd05070         138 ----------------------GLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  195 (260)
T ss_pred             ----------------------CceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHH
Confidence                                  456899999999653321    122334567999999988889999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          356 LAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       356 llt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |++ |.+||....      ..+....+...   .                                      ....+...
T Consensus       196 l~~~g~~p~~~~~------~~~~~~~~~~~---~--------------------------------------~~~~~~~~  228 (260)
T cd05070         196 LVTKGRVPYPGMN------NREVLEQVERG---Y--------------------------------------RMPCPQDC  228 (260)
T ss_pred             HHhcCCCCCCCCC------HHHHHHHHHcC---C--------------------------------------CCCCCCcC
Confidence            999 899996432      11222211100   0                                      01122345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +..+.+||.+||..||.+|||+.++++
T Consensus       229 ~~~~~~li~~~l~~~p~~Rpt~~~l~~  255 (260)
T cd05070         229 PISLHELMLQCWKKDPEERPTFEYLQS  255 (260)
T ss_pred             CHHHHHHHHHHcccCcccCcCHHHHHH
Confidence            678999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5e-38  Score=307.84  Aligned_cols=247  Identities=22%  Similarity=0.335  Sum_probs=197.3

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|++.+.||+|+||.||+|.+. +++.||||.++........+.+|+.+++++      .|+||+++++++.    .
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~-~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   72 (261)
T cd05068           4 DRTSIQLLRKLGAGQFGEVWEGLWN-NTTPVAVKTLKPGTMDPKDFLAEAQIMKKL------RHPKLIQLYAVCT----L   72 (261)
T ss_pred             chhheeeEEEecccCCccEEEEEec-CCeEEEEEeeCCCcccHHHHHHHHHHHHHC------CCCCccceeEEEe----c
Confidence            3578999999999999999999864 457899999887655567788999999999      7888999999887    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....|+||||+ +++|.+++.......+++..+..++.||+.||.|||++ ||+||||||+||+++.             
T Consensus        73 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nil~~~-------------  138 (261)
T cd05068          73 EEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ-NYIHRDLAARNVLVGE-------------  138 (261)
T ss_pred             CCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCCcceEEEcC-------------
Confidence            46799999999 89999998765444589999999999999999999997 9999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (261)
T cd05068         139 --------------------------------------------------------------------------------  138 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-cCCCCC---CCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-FTNDIQ---TRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~~~~~g---t~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                             +..++|+|||++...... .....|   +..|+|||++.+..++.++|||||||++|
T Consensus       139 -----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  195 (261)
T cd05068         139 -----------------------NNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLT  195 (261)
T ss_pred             -----------------------CCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHH
Confidence                                   456999999998754322 111222   34799999999888999999999999999


Q ss_pred             HHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +|++ |..||.+..      ....+..+...   .                                      ....+..
T Consensus       196 el~t~g~~p~~~~~------~~~~~~~~~~~---~--------------------------------------~~~~~~~  228 (261)
T cd05068         196 EIVTYGRMPYPGMT------NAEVLQQVDQG---Y--------------------------------------RMPCPPG  228 (261)
T ss_pred             HHHhcCCCCCCCCC------HHHHHHHHHcC---C--------------------------------------CCCCCCc
Confidence            9999 999996432      11111111100   0                                      0012234


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+..+.+|+.+||+.||.+||++.+++.
T Consensus       229 ~~~~~~~li~~~l~~~P~~Rp~~~~l~~  256 (261)
T cd05068         229 CPKELYDIMLDCWKEDPDDRPTFETLQW  256 (261)
T ss_pred             CCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence            4678999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=1.6e-38  Score=307.15  Aligned_cols=228  Identities=27%  Similarity=0.339  Sum_probs=183.9

Q ss_pred             ccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-C
Q 045988           53 GHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-G  131 (530)
Q Consensus        53 G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~  131 (530)
                      |.||.||+|+++.+++.||+|.+.....    ..+|...+...      .||||+++++++.    .....|+||||+ +
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~----~~~~~~~~~~~------~~~~i~~~~~~~~----~~~~~~lv~e~~~~   69 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE----YSRERLTIIPH------CVPNMVCLHKYIV----SEDSVFLVLQHAEG   69 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh----hhhHHHHHHhc------CCCceeehhhhee----cCCeEEEEEecCCC
Confidence            8999999999999999999999876532    22344333333      6899999999998    457899999999 8


Q ss_pred             cCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccC
Q 045988          132 ENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVL  211 (530)
Q Consensus       132 ~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (530)
                      ++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||+++.                          
T Consensus        70 ~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~dlkp~Nil~~~--------------------------  120 (237)
T cd05576          70 GKLWSHISKF--LNIPEECVKRWAAEMVVALDALHRE-GIVCRDLNPNNILLDD--------------------------  120 (237)
T ss_pred             CCHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEEcC--------------------------
Confidence            8999988643  3489999999999999999999997 9999999999999955                          


Q ss_pred             CCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCc
Q 045988          212 DPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSR  291 (530)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (530)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (237)
T cd05576         121 --------------------------------------------------------------------------------  120 (237)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCC
Q 045988          292 SRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNY  371 (530)
Q Consensus       292 ~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~  371 (530)
                                +..++|+|||.+...........++..|+|||.+.+..++.++||||+||++|+|++|..||......  
T Consensus       121 ----------~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~--  188 (237)
T cd05576         121 ----------RGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSG--  188 (237)
T ss_pred             ----------CCCEEEecccchhccccccccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh--
Confidence                      45689999998865554445556788899999998888999999999999999999999887422100  


Q ss_pred             CCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCC
Q 045988          372 DRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPE  451 (530)
Q Consensus       372 ~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~  451 (530)
                                          ..                              ......++...++.+.+||.+||+.||.
T Consensus       189 --------------------~~------------------------------~~~~~~~~~~~~~~~~~li~~~l~~dp~  218 (237)
T cd05576         189 --------------------IN------------------------------THTTLNIPEWVSEEARSLLQQLLQFNPT  218 (237)
T ss_pred             --------------------cc------------------------------cccccCCcccCCHHHHHHHHHHccCCHH
Confidence                                00                              0000122334567899999999999999


Q ss_pred             CCcCH-----HHHhcCCCC
Q 045988          452 KRPTA-----AQCLTHPWI  465 (530)
Q Consensus       452 ~Rpta-----~elL~hp~f  465 (530)
                      +|+++     .++++||||
T Consensus       219 ~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         219 ERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             HhcCCCccchHHHHcCCCC
Confidence            99996     999999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=9.7e-38  Score=303.87  Aligned_cols=251  Identities=30%  Similarity=0.465  Sum_probs=205.5

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|.+.+.||+|++|.||+|.+..+++.|++|++....   ...+.+.+|+.+++++      +|+||+++++.+...  .
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~--~   72 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSL------QHPNIVRYYGSERDE--E   72 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHc------CCCCEeeEEEEEecC--C
Confidence            5889999999999999999999999999999987654   3456778899999999      688899999998843  1


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....++||||+ +++|.+++....  .+++..+..++.|++.||+|||++ |++|+||+|+||+++.             
T Consensus        73 ~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~-~~~h~dl~p~ni~i~~-------------  136 (260)
T cd06606          73 KNTLNIFLEYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHSN-GIVHRDIKGANILVDS-------------  136 (260)
T ss_pred             CCeEEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEcC-------------
Confidence            26899999999 899999987543  689999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (260)
T cd06606         137 --------------------------------------------------------------------------------  136 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                             .+.++|+|||.+......     .....++..|+|||.+.+..++.++|||||||++
T Consensus       137 -----------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il  193 (260)
T cd06606         137 -----------------------DGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTV  193 (260)
T ss_pred             -----------------------CCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHH
Confidence                                   456899999998764433     3445688899999999888899999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|..||....        .....+..+..                                     ......++..
T Consensus       194 ~~l~~g~~p~~~~~--------~~~~~~~~~~~-------------------------------------~~~~~~~~~~  228 (260)
T cd06606         194 IEMATGKPPWSELG--------NPMAALYKIGS-------------------------------------SGEPPEIPEH  228 (260)
T ss_pred             HHHHhCCCCCCCCC--------chHHHHHhccc-------------------------------------cCCCcCCCcc
Confidence            99999999996432        11111111110                                     0001123334


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+..+.+||.+||..||.+||++.++|.||||
T Consensus       229 ~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~~~~  260 (260)
T cd06606         229 LSEEAKDFLRKCLRRDPKKRPTADELLQHPFL  260 (260)
T ss_pred             cCHHHHHHHHHhCcCChhhCCCHHHHhhCCCC
Confidence            46889999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=4.8e-38  Score=316.57  Aligned_cols=274  Identities=22%  Similarity=0.249  Sum_probs=193.5

Q ss_pred             cceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc
Q 045988           54 HFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL  130 (530)
Q Consensus        54 ~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~  130 (530)
                      +++.||.+++..+++.||||+++..   ......+.+|+.+++.+      .|+||++++++|.    .....+++|||+
T Consensus        12 ~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l------~h~~i~~~~~~~~----~~~~~~~~~e~~   81 (314)
T cd08216          12 DLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQL------QHPNILPYVTSFI----VDSELYVVSPLM   81 (314)
T ss_pred             CCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhc------CCcchhhhhheee----cCCeEEEEEecc
Confidence            4455666666779999999998754   23446788999999999      7888999999998    457899999999


Q ss_pred             -CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccc
Q 045988          131 -GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKL  209 (530)
Q Consensus       131 -~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (530)
                       +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.                        
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~-~ivH~dlk~~Nili~~------------------------  136 (314)
T cd08216          82 AYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK-GFIHRSVKASHILLSG------------------------  136 (314)
T ss_pred             CCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCcceEEEec------------------------
Confidence             78999998765555689999999999999999999997 9999999999999965                        


Q ss_pred             cCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCC
Q 045988          210 VLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRP  289 (530)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (314)
T cd08216         137 --------------------------------------------------------------------------------  136 (314)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CchhhhhhhhhcccceEEecCCccccccc----------ccCCCCCCCCccCChhhcCC--CCCCcchhHHHHHHHHHHH
Q 045988          290 SRSRRKELLAAVDLKCKLVDFGNACWTYK----------QFTNDIQTRQYRCPEVLLGS--KYSTPADLWSFACICFELA  357 (530)
Q Consensus       290 ~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----------~~~~~~gt~~y~aPE~l~~~--~~~~~~DiWSlG~il~ell  357 (530)
                                  ++.++|+|||.+.....          ......++..|+|||++.+.  .|+.++||||+||++|+|+
T Consensus       137 ------------~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~  204 (314)
T cd08216         137 ------------DGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELA  204 (314)
T ss_pred             ------------CCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHH
Confidence                        45689999998854321          11233567789999999763  5889999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|..||....        .....+....|..+..+... ......    ......... ..................+.+
T Consensus       205 ~g~~pf~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  270 (314)
T cd08216         205 NGHVPFKDMP--------ATQMLLEKVRGTVPCLLDKS-TYPLYE----DSMSQSRSS-NEHPNNRDSVDHPYTRTFSEH  270 (314)
T ss_pred             hCCCCCCCCC--------HHHHHHHHHhccCccccccC-chhhhc----CCcCccccc-ccccchhhhhhcchhhHHHHH
Confidence            9999996432        11111122233222111100 000000    000000000 000000111111233345678


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +.+||.+||++||++|||+.++|+||||+..
T Consensus       271 ~~~li~~~l~~~P~~Rpt~~~ll~~p~~~~~  301 (314)
T cd08216         271 FHQFVELCLQRDPESRPSASQLLNHSFFKQC  301 (314)
T ss_pred             HHHHHHHHhhcCCCcCcCHHHHhcCchHhhh
Confidence            9999999999999999999999999999854

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=6.8e-38  Score=307.70  Aligned_cols=250  Identities=24%  Similarity=0.377  Sum_probs=197.2

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.++||+|+||.||+|++..+++.||||.++...    .....+.+|+.+++.+      .||||+++++.+..  
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~--   73 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQL------NHPNVIKYLDSFIE--   73 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhC------CCcceeeeeeeEEE--
Confidence            58999999999999999999999999999999765422    2234577899999999      78889999999884  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                        ....++||||+ +++|.+++....  ...+++..+..++.||+.||.|||++ ||+||||||+|||++.         
T Consensus        74 --~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~~~nil~~~---------  141 (267)
T cd08228          74 --DNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR-RVMHRDIKPANVFITA---------  141 (267)
T ss_pred             --CCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC-CeeCCCCCHHHEEEcC---------
Confidence              46899999999 789998886432  23488999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (267)
T cd08228         142 --------------------------------------------------------------------------------  141 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                                 ++.++|+|||.+......   .....|++.|+|||.+.+..++.++|+|||||
T Consensus       142 ---------------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~  194 (267)
T cd08228         142 ---------------------------TGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGC  194 (267)
T ss_pred             ---------------------------CCCEEECccccceeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHH
Confidence                                       456899999998654322   22456889999999999888999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|..||.....     ....+.......+.++                                       ...
T Consensus       195 ~l~el~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~---------------------------------------~~~  230 (267)
T cd08228         195 LLYEMAALQSPFYGDKM-----NLFSLCQKIEQCDYPP---------------------------------------LPT  230 (267)
T ss_pred             HHHHHhcCCCCCccccc-----cHHHHHHHHhcCCCCC---------------------------------------CCh
Confidence            99999999999953221     1111111111101000                                       011


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ...+..+.+||.+||+.+|.+||++.++|+.
T Consensus       231 ~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~  261 (267)
T cd08228         231 EHYSEKLRELVSMCIYPDPDQRPDIGYVHQI  261 (267)
T ss_pred             hhcCHHHHHHHHHHCCCCcccCcCHHHHHHH
Confidence            2345779999999999999999999999973

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=3.9e-38  Score=311.45  Aligned_cols=249  Identities=22%  Similarity=0.370  Sum_probs=193.1

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..++|++.++||+|+||.||+|.+.     .++..||||++....  .....+.+|+.+++.+      .|+||++++++
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l------~~~~iv~~~~~   77 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF------NCHHVVRLLGV   77 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCeeeEEEE
Confidence            3578999999999999999999864     245789999876532  2234577899999888      78889999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEE
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL  183 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl  183 (530)
                      +.    .+...++||||+ +++|.+++.....        ..++...+..++.||+.||+|||++ |++||||||+|||+
T Consensus        78 ~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~~vH~dlkp~Nil~  152 (277)
T cd05062          78 VS----QGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCMV  152 (277)
T ss_pred             Ec----CCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCcchheEEE
Confidence            87    456899999999 8899998865321        2256788899999999999999997 99999999999999


Q ss_pred             eeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 045988          184 MSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSV  263 (530)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (530)
                      +.                                                                              
T Consensus       153 ~~------------------------------------------------------------------------------  154 (277)
T cd05062         153 AE------------------------------------------------------------------------------  154 (277)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            54                                                                              


Q ss_pred             ccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCC
Q 045988          264 EDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~  338 (530)
                                                            +..++|+|||++......     .....+++.|+|||++.+.
T Consensus       155 --------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  196 (277)
T cd05062         155 --------------------------------------DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDG  196 (277)
T ss_pred             --------------------------------------CCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcC
Confidence                                                  456999999998643221     1223457789999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          339 KYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                      .++.++|||||||++|+|++ |..||.+..      .......+..  +.                              
T Consensus       197 ~~~~~~Di~slG~~l~el~~~~~~p~~~~~------~~~~~~~~~~--~~------------------------------  238 (277)
T cd05062         197 VFTTYSDVWSFGVVLWEIATLAEQPYQGMS------NEQVLRFVME--GG------------------------------  238 (277)
T ss_pred             CcCchhHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--CC------------------------------
Confidence            89999999999999999999 788996432      1111111100  00                              


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                               ....+...+..+.+||.+||+.||.+|||+.|++++
T Consensus       239 ---------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  274 (277)
T cd05062         239 ---------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  274 (277)
T ss_pred             ---------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                     001223446789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-39  Score=325.89  Aligned_cols=233  Identities=24%  Similarity=0.347  Sum_probs=194.6

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV  126 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lV  126 (530)
                      ++-||+|+.|.||+++  -.++.||||.++.-.      ..+|+-|++|      .|+||+.+.+++..    ...+|||
T Consensus       129 LeWlGSGaQGAVF~Gr--l~netVAVKKV~elk------ETdIKHLRkL------kH~NII~FkGVCtq----sPcyCIi  190 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGR--LHNETVAVKKVRELK------ETDIKHLRKL------KHPNIITFKGVCTQ----SPCYCII  190 (904)
T ss_pred             hhhhccCcccceeeee--ccCceehhHHHhhhh------hhhHHHHHhc------cCcceeeEeeeecC----CceeEEe
Confidence            4679999999999995  457889999554322      2467778888      78889999999984    4789999


Q ss_pred             Eecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccc
Q 045988          127 FEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTK  205 (530)
Q Consensus       127 mE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~  205 (530)
                      |||| .|.|.++++.  .+.+.......|..+|+.|+.|||.+ .|||||||.-||||+.                    
T Consensus       191 MEfCa~GqL~~VLka--~~~itp~llv~Wsk~IA~GM~YLH~h-KIIHRDLKSPNiLIs~--------------------  247 (904)
T KOG4721|consen  191 MEFCAQGQLYEVLKA--GRPITPSLLVDWSKGIAGGMNYLHLH-KIIHRDLKSPNILISY--------------------  247 (904)
T ss_pred             eeccccccHHHHHhc--cCccCHHHHHHHHHHhhhhhHHHHHh-hHhhhccCCCceEeec--------------------
Confidence            9999 9999999974  34589999999999999999999998 9999999999999966                    


Q ss_pred             cccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccccccc
Q 045988          206 KDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKD  285 (530)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (530)
                                                                                                      
T Consensus       248 --------------------------------------------------------------------------------  247 (904)
T KOG4721|consen  248 --------------------------------------------------------------------------------  247 (904)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCC
Q 045988          286 CKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF  363 (530)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF  363 (530)
                                      +..|||+|||.++....  ..-.++||..|||||++...+.+.|+|||||||+|||||||..||
T Consensus       248 ----------------~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPY  311 (904)
T KOG4721|consen  248 ----------------DDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPY  311 (904)
T ss_pred             ----------------cceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCc
Confidence                            45699999999976443  345679999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHh
Q 045988          364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLV  443 (530)
Q Consensus       364 ~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~  443 (530)
                      .         +.+..+.|+.+-.                                     ..-.+.++..+++.++=||+
T Consensus       312 k---------dVdssAIIwGVGs-------------------------------------NsL~LpvPstcP~GfklL~K  345 (904)
T KOG4721|consen  312 K---------DVDSSAIIWGVGS-------------------------------------NSLHLPVPSTCPDGFKLLLK  345 (904)
T ss_pred             c---------ccchheeEEeccC-------------------------------------CcccccCcccCchHHHHHHH
Confidence            5         3444443332210                                     01123567788999999999


Q ss_pred             hccCcCCCCCcCHHHHhcC
Q 045988          444 PILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       444 ~mL~~dP~~Rpta~elL~h  462 (530)
                      .||.-.|..||+..++|.|
T Consensus       346 qcw~sKpRNRPSFrqil~H  364 (904)
T KOG4721|consen  346 QCWNSKPRNRPSFRQILLH  364 (904)
T ss_pred             HHHhcCCCCCccHHHHHHH
Confidence            9999999999999999998

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=4.1e-38  Score=307.78  Aligned_cols=246  Identities=21%  Similarity=0.329  Sum_probs=193.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ..+|++.+.||+|+||+||+|.... +..||||.+.........+.+|+.+++++      +||||+++++++.    ..
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~-~~~~aik~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~~   71 (256)
T cd05113           3 PKDLTFLKELGTGQFGVVKYGKWRG-QYDVAIKMIKEGSMSEDEFIEEAKVMMKL------SHEKLVQLYGVCT----KQ   71 (256)
T ss_pred             hHHeEEeeEecCcccceEEEEEecC-CCcEEEEEcCCCcccHHHHHHHHHHHhcC------CCCCeeeEEEEEc----cC
Confidence            4679999999999999999997643 45699998876555556788999999998      7889999999987    34


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+|+||||+|||++.              
T Consensus        72 ~~~~lv~e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~nili~~--------------  135 (256)
T cd05113          72 RPIYIVTEYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLESK-QFIHRDLAARNCLVDD--------------  135 (256)
T ss_pred             CCcEEEEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccccCcceEEEcC--------------
Confidence            6789999999 889999886533 2589999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (256)
T cd05113         136 --------------------------------------------------------------------------------  135 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                            +..++|+|||.+......    .....++..|+|||++.+..++.++|||||||++|+
T Consensus       136 ----------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~  193 (256)
T cd05113         136 ----------------------QGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWE  193 (256)
T ss_pred             ----------------------CCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHH
Confidence                                  456999999998643221    112234567999999988889999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          356 LAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       356 llt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |++ |..||....      .......+...  ..                                       ...+...
T Consensus       194 l~~~g~~p~~~~~------~~~~~~~~~~~--~~---------------------------------------~~~~~~~  226 (256)
T cd05113         194 VYSLGKMPYERFN------NSETVEKVSQG--LR---------------------------------------LYRPHLA  226 (256)
T ss_pred             HhcCCCCCcCcCC------HHHHHHHHhcC--CC---------------------------------------CCCCCCC
Confidence            998 999995432      11111111100  00                                       0011224


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      +..+.+|+.+||+.||.+||++.+++.+
T Consensus       227 ~~~~~~li~~cl~~~p~~Rp~~~~ll~~  254 (256)
T cd05113         227 SEKVYAIMYSCWHEKAEERPTFQQLLSS  254 (256)
T ss_pred             CHHHHHHHHHHcCCCcccCCCHHHHHHh
Confidence            5788999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=1.6e-38  Score=311.04  Aligned_cols=241  Identities=31%  Similarity=0.494  Sum_probs=195.2

Q ss_pred             eccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           50 LGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        50 LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ||.|+||.||+|.+..+++.||+|++....    .....+.+|+++++++      .|+||+++++.+.    .+...|+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~----~~~~~~l   70 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQA------QSPYVVKLYYSFQ----GKKNLYL   70 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhC------CCcchhHHHHhee----cCcEEEE
Confidence            689999999999999999999999987543    2455678899999988      6888999999987    5578999


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccc
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLT  204 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~  204 (530)
                      ||||+ +++|.+++....  .+++..+..++.||+.||+|||++ ||+||||+|+|||++.                   
T Consensus        71 v~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~~-~i~H~di~~~nil~~~-------------------  128 (265)
T cd05579          71 VMEYLPGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLHSN-GIIHRDLKPDNILIDS-------------------  128 (265)
T ss_pred             EEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHc-CeecCCCCHHHeEEcC-------------------
Confidence            99999 789999987533  589999999999999999999997 9999999999999955                   


Q ss_pred             ccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 045988          205 KKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK  284 (530)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (530)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (265)
T cd05579         129 --------------------------------------------------------------------------------  128 (265)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCchhhhhhhhhcccceEEecCCccccccc-----------ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          285 DCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----------QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----------~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                       +..++|+|||++.....           ......++..|+|||.+....++.++|||||||++
T Consensus       129 -----------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~  191 (265)
T cd05579         129 -----------------NGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCIL  191 (265)
T ss_pred             -----------------CCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHH
Confidence                             45699999999864322           12334678899999999888899999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|..||....      .......+..  +                                        ....+..
T Consensus       192 ~~l~~g~~p~~~~~------~~~~~~~~~~--~----------------------------------------~~~~~~~  223 (265)
T cd05579         192 YEFLVGIPPFHGET------PEEIFQNILN--G----------------------------------------KIEWPED  223 (265)
T ss_pred             HHHHhCCCCCCCCC------HHHHHHHHhc--C----------------------------------------CcCCCcc
Confidence            99999999996432      1111111100  0                                        0011111


Q ss_pred             --cHHHHHHHHhhccCcCCCCCcCH---HHHhcCCCCCC
Q 045988          434 --DANDMADFLVPILDFVPEKRPTA---AQCLTHPWINV  467 (530)
Q Consensus       434 --~~~~~~dLl~~mL~~dP~~Rpta---~elL~hp~f~~  467 (530)
                        .+..+.+||.+||+.+|.+|||+   .++|+||||+.
T Consensus       224 ~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~~~~~~  262 (265)
T cd05579         224 VEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKNHPFFKG  262 (265)
T ss_pred             ccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhcCccccC
Confidence              36788999999999999999999   99999999974

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.8e-38  Score=305.86  Aligned_cols=245  Identities=23%  Similarity=0.342  Sum_probs=198.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.+.||.|+||.||+|..  .|+.||+|.+.........+.+|+.+++.+      .|+||+++++++.    ..
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~~   72 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDY--RGQKVAVKCLKDDSTAAQAFLAEASVMTTL------RHPNLVQLLGVVL----QG   72 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEe--cCcEEEEEEeccchhHHHHHHHHHHHHHhc------CCcceeeeEEEEc----CC
Confidence            56899999999999999999975  478999999887655567788999999999      7888999999988    34


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...++||||+ +++|.+++.......+++..+..++.|++.||.|||++ ||+||||||+|||++.              
T Consensus        73 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~-~i~H~di~p~Nili~~--------------  137 (256)
T cd05039          73 NPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEK-NFVHRDLAARNVLVSE--------------  137 (256)
T ss_pred             CCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CccchhcccceEEEeC--------------
Confidence            7899999999 78999998765544689999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (256)
T cd05039         138 --------------------------------------------------------------------------------  137 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-  358 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-  358 (530)
                                            ++.++|+|||.+...........++..|+|||.+.+..++.++|||||||++|+|++ 
T Consensus       138 ----------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~  195 (256)
T cd05039         138 ----------------------DLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSF  195 (256)
T ss_pred             ----------------------CCCEEEcccccccccccccccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhc
Confidence                                  456899999999765444344445667999999988889999999999999999997 


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |..||....       ...+   ...+...                                     .....+...++.+
T Consensus       196 g~~p~~~~~-------~~~~---~~~~~~~-------------------------------------~~~~~~~~~~~~~  228 (256)
T cd05039         196 GRVPYPRIP-------LKDV---VPHVEKG-------------------------------------YRMEAPEGCPPEV  228 (256)
T ss_pred             CCCCCCCCC-------HHHH---HHHHhcC-------------------------------------CCCCCccCCCHHH
Confidence            999995332       1111   1110000                                     0011223346789


Q ss_pred             HHHHhhccCcCCCCCcCHHHHhc
Q 045988          439 ADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+||.+||..+|.+||++.++++
T Consensus       229 ~~li~~~l~~~p~~Rp~~~~l~~  251 (256)
T cd05039         229 YKVMKDCWELDPAKRPTFKQLRE  251 (256)
T ss_pred             HHHHHHHhccChhhCcCHHHHHH
Confidence            99999999999999999999986

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=1.2e-37  Score=303.41  Aligned_cols=249  Identities=27%  Similarity=0.463  Sum_probs=203.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|.+.+.||.|+||.||+|.+..++..||+|++....   .....+.+|+++++.+      .|+|++++++.+..    
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~~~~~~~~~~~----   70 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKL------NHPNIIKYYESFEE----   70 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhc------CCCChhheEEEEec----
Confidence            5899999999999999999999999999999887543   3456678899999999      68889999999884    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      +...++||||+ +++|.+++....  ...+++..+..++.||+.||.|||++ |++|+||+|+||+++.           
T Consensus        71 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~-~~~H~dl~~~nil~~~-----------  138 (258)
T cd08215          71 KGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR-KILHRDIKPQNIFLTS-----------  138 (258)
T ss_pred             CCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC-CEecccCChHHeEEcC-----------
Confidence            47899999999 789999887643  35599999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (258)
T cd08215         139 --------------------------------------------------------------------------------  138 (258)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                               ...++|+|||.+......   .....|++.|+|||.+.+..++.++|+||+|+++
T Consensus       139 -------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~  193 (258)
T cd08215         139 -------------------------NGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVL  193 (258)
T ss_pred             -------------------------CCcEEECCccceeecccCcceecceeeeecccChhHhccCCCCccccHHHHHHHH
Confidence                                     456899999998654322   2334688899999999888899999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|..||....      ......   ......                                      ...++..
T Consensus       194 ~~l~~g~~p~~~~~------~~~~~~---~~~~~~--------------------------------------~~~~~~~  226 (258)
T cd08215         194 YELCTLKHPFEGEN------LLELAL---KILKGQ--------------------------------------YPPIPSQ  226 (258)
T ss_pred             HHHHcCCCCCCCCc------HHHHHH---HHhcCC--------------------------------------CCCCCCC
Confidence            99999999995332      011111   110000                                      0012224


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .+..+.++|.+||..+|.+|||+.++|.||||
T Consensus       227 ~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         227 YSSELRNLVSSLLQKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHhcCCCC
Confidence            56789999999999999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=5.2e-38  Score=306.82  Aligned_cols=245  Identities=21%  Similarity=0.282  Sum_probs=195.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ..+|++.+.||+|+||.||+|..  .|..||+|.++... ....+.+|+.+++++      .|+||+++++++..   .+
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~--~~~~~~~k~~~~~~-~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~---~~   72 (256)
T cd05082           5 MKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA-TAQAFLAEASVMTQL------RHSNLVQLLGVIVE---EK   72 (256)
T ss_pred             HHhCeeeeeecccCCCeEEEEEE--cCCcEEEEEeCCCc-hHHHHHHHHHHHHhC------CCCCeeeEEEEEEc---CC
Confidence            46899999999999999999965  47889999887543 355688999999998      67889999987653   34


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.              
T Consensus        73 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nil~~~--------------  137 (256)
T cd05082          73 GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN-NFVHRDLAARNVLVSE--------------  137 (256)
T ss_pred             CceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeccccchheEEEcC--------------
Confidence            6789999999 78999998765544588999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (256)
T cd05082         138 --------------------------------------------------------------------------------  137 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-  358 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-  358 (530)
                                            ++.++|+|||++...........++..|+|||++.+..++.++|||||||++|+|++ 
T Consensus       138 ----------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~  195 (256)
T cd05082         138 ----------------------DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSF  195 (256)
T ss_pred             ----------------------CCcEEecCCccceeccccCCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhC
Confidence                                  457999999998765443344455678999999988889999999999999999997 


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |.+||....      .......+.   ..                                      .....+...++.+
T Consensus       196 g~~p~~~~~------~~~~~~~~~---~~--------------------------------------~~~~~~~~~~~~~  228 (256)
T cd05082         196 GRVPYPRIP------LKDVVPRVE---KG--------------------------------------YKMDAPDGCPPVV  228 (256)
T ss_pred             CCCCCCCCC------HHHHHHHHh---cC--------------------------------------CCCCCCCCCCHHH
Confidence            999995322      011111110   00                                      0011223456789


Q ss_pred             HHHHhhccCcCCCCCcCHHHHhc
Q 045988          439 ADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+||.+||+.||.+|||+.++++
T Consensus       229 ~~li~~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         229 YDVMKQCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             HHHHHHHhcCChhhCcCHHHHHH
Confidence            99999999999999999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=7.6e-38  Score=312.62  Aligned_cols=259  Identities=24%  Similarity=0.327  Sum_probs=199.9

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ..++|.+.+.||+|+||.||+|.+..+++.||||+++...  .....+.+|+.++.++.     .|+||+++++++.   
T Consensus        13 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~i~~~~~~~~---   84 (296)
T cd06618          13 DLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSH-----DCPYIVKCYGYFI---   84 (296)
T ss_pred             CcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhcc-----CCCchHhhheeee---
Confidence            3578999999999999999999999999999999987543  22344566777665552     6899999999998   


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       .....|+||||+++.|.+++.... ..+++..+..++.||+.||+|||++.||+||||+|+||+++.            
T Consensus        85 -~~~~~~~v~e~~~~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~------------  150 (296)
T cd06618          85 -TDSDVFICMELMSTCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDA------------  150 (296)
T ss_pred             -cCCeEEEEeeccCcCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcC------------
Confidence             457899999999888888776433 368999999999999999999997349999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (296)
T cd06618         151 --------------------------------------------------------------------------------  150 (296)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCC----CCCcchhHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSK----YSTPADLWSFAC  351 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~----~~~~~DiWSlG~  351 (530)
                                              +..++|+|||.+.....  ......++..|+|||.+.+..    ++.++|||||||
T Consensus       151 ------------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~  206 (296)
T cd06618         151 ------------------------SGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGI  206 (296)
T ss_pred             ------------------------CCCEEECccccchhccCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHH
Confidence                                    45699999999865322  223345788999999997653    788999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|..||....     ...+.+.   ..+......                                    ....
T Consensus       207 il~el~~g~~p~~~~~-----~~~~~~~---~~~~~~~~~------------------------------------~~~~  242 (296)
T cd06618         207 SLVELATGQFPYKNCK-----TEFEVLT---KILQEEPPS------------------------------------LPPN  242 (296)
T ss_pred             HHHHHHhCCCCCCcch-----hHHHHHH---HHhcCCCCC------------------------------------CCCC
Confidence            9999999999995321     0111111   111110000                                    0011


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ...+.++.+||.+||..||.+||++.+++.||||...
T Consensus       243 ~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  279 (296)
T cd06618         243 EGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPFIRRY  279 (296)
T ss_pred             CCCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhcc
Confidence            1245678999999999999999999999999999854

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=5.8e-38  Score=311.26  Aligned_cols=248  Identities=21%  Similarity=0.320  Sum_probs=194.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeC----CCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDT----QTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~----~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ...|++.++||+|+||+||+|...    .++..||+|.+.....  ....+.+|+.+++++      .||||+++++++.
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~   77 (283)
T cd05090           4 LSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAEL------HHPNIVCLLGVVT   77 (283)
T ss_pred             hhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhC------CCCCeeeEEEEEe
Confidence            467999999999999999999853    4568999998874322  234677899999999      7888999999987


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhc---------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYAD---------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~---------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                          .+...|+||||+ +++|.+++....               ...+++..+..++.||+.||+|||++ ||+||||||
T Consensus        78 ----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~-~i~H~dlkp  152 (283)
T cd05090          78 ----QEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH-FFVHKDLAA  152 (283)
T ss_pred             ----cCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc-Ceehhcccc
Confidence                457899999999 889999885322               12378888999999999999999997 999999999


Q ss_pred             CcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 045988          179 ENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEP  258 (530)
Q Consensus       179 ~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (530)
                      +|||++.                                                                         
T Consensus       153 ~nili~~-------------------------------------------------------------------------  159 (283)
T cd05090         153 RNILIGE-------------------------------------------------------------------------  159 (283)
T ss_pred             ceEEEcC-------------------------------------------------------------------------
Confidence            9999954                                                                         


Q ss_pred             CCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCCh
Q 045988          259 NGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPE  333 (530)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE  333 (530)
                                                                 +..++|+|||++......     .....++..|+|||
T Consensus       160 -------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  196 (283)
T cd05090         160 -------------------------------------------QLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPE  196 (283)
T ss_pred             -------------------------------------------CCcEEeccccccccccCCcceecccCCCccceecChH
Confidence                                                       456899999999653221     23344567899999


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccc
Q 045988          334 VLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI  412 (530)
Q Consensus       334 ~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  412 (530)
                      ++.+..++.++|||||||++|+|++ |.+||.+.+      . ..+..+.....                          
T Consensus       197 ~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~------~-~~~~~~~~~~~--------------------------  243 (283)
T cd05090         197 AIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS------N-QEVIEMVRKRQ--------------------------  243 (283)
T ss_pred             HhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC------H-HHHHHHHHcCC--------------------------
Confidence            9988889999999999999999998 999996432      1 11111111000                          


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                    ....+...++.+.+||.+||+.||.+||++.+++++
T Consensus       244 --------------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~  279 (283)
T cd05090         244 --------------LLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTR  279 (283)
T ss_pred             --------------cCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence                          011233456789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=2.1e-38  Score=317.79  Aligned_cols=251  Identities=20%  Similarity=0.267  Sum_probs=193.7

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCe--EEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSH--YVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~--~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +.-++|++.+.||+|+||.||+|.+..++.  .+|+|.++..  ......+.+|+.++.++.     +|+||+++++++.
T Consensus         4 ~~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~-----~h~~iv~~~~~~~   78 (303)
T cd05088           4 LEWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HHPNIINLLGACE   78 (303)
T ss_pred             cchhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhc-----CCCCcceEEEEEC
Confidence            345789999999999999999999887775  4577766542  223456778999999984     5888999999988


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYAD--------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPE  179 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~--------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~  179 (530)
                          .+...|+||||+ +++|.+++....              ...+++..++.++.||+.||+|||++ ||+||||||+
T Consensus        79 ----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~-gi~H~dlkp~  153 (303)
T cd05088          79 ----HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAAR  153 (303)
T ss_pred             ----CCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC-Cccccccchh
Confidence                446899999999 889999986432              12478999999999999999999997 9999999999


Q ss_pred             cEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCC
Q 045988          180 NVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPN  259 (530)
Q Consensus       180 NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (530)
                      |||++.                                                                          
T Consensus       154 Nili~~--------------------------------------------------------------------------  159 (303)
T cd05088         154 NILVGE--------------------------------------------------------------------------  159 (303)
T ss_pred             eEEecC--------------------------------------------------------------------------
Confidence            999954                                                                          


Q ss_pred             CCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcC
Q 045988          260 GDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLG  337 (530)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~  337 (530)
                                                                +..++|+|||++......  .....++..|+|||++.+
T Consensus       160 ------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~  197 (303)
T cd05088         160 ------------------------------------------NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNY  197 (303)
T ss_pred             ------------------------------------------CCcEEeCccccCcccchhhhcccCCCcccccCHHHHhc
Confidence                                                      456999999998643211  111234567999999988


Q ss_pred             CCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcc
Q 045988          338 SKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR  416 (530)
Q Consensus       338 ~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (530)
                      ..++.++|||||||++|+|++ |.+||.....      .+....+   ....                            
T Consensus       198 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~~------~~~~~~~---~~~~----------------------------  240 (303)
T cd05088         198 SVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC------AELYEKL---PQGY----------------------------  240 (303)
T ss_pred             cCCcccccchhhhhHHHHHHhcCCCCcccCCh------HHHHHHH---hcCC----------------------------
Confidence            889999999999999999998 9999964321      1111110   0000                            


Q ss_pred             cCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                ....+...++++.+||.+||+.||.+||++.++|.+
T Consensus       241 ----------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  276 (303)
T cd05088         241 ----------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  276 (303)
T ss_pred             ----------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                      001122345678999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=3.4e-38  Score=318.19  Aligned_cols=248  Identities=21%  Similarity=0.304  Sum_probs=194.3

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCe----EEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSH----YVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~----~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      +...+|++.+.||+|+||+||+|.+..++.    .||+|+++...  .....+.+|+.+++.+      .||||++++++
T Consensus         4 ~~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~~~g~   77 (316)
T cd05108           4 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------DNPHVCRLLGI   77 (316)
T ss_pred             cchhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEE
Confidence            456789999999999999999998766654    48999886432  3345678899999998      78889999998


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +..     ...++|+||+ +++|.+++.... ..++...+..++.||+.||+|||++ ||+||||||+|||++.      
T Consensus        78 ~~~-----~~~~~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~-~iiH~dlkp~Nill~~------  144 (316)
T cd05108          78 CLT-----STVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEER-RLVHRDLAARNVLVKT------  144 (316)
T ss_pred             EcC-----CCceeeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHhc-CeeccccchhheEecC------
Confidence            874     3467999999 899999887533 3488899999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (316)
T cd05108         145 --------------------------------------------------------------------------------  144 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc-----CCCCCCCCccCChhhcCCCCCCcchh
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-----TNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                    +..++|+|||++.......     ....++..|+|||++.+..++.++||
T Consensus       145 ------------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di  194 (316)
T cd05108         145 ------------------------------PQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDV  194 (316)
T ss_pred             ------------------------------CCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhh
Confidence                                          4569999999997543221     12234667999999999899999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          347 WSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       347 WSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      |||||++|+|++ |..||.+..       ...+..+.....                                       
T Consensus       195 ~slGv~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~---------------------------------------  228 (316)
T cd05108         195 WSYGVTVWELMTFGSKPYDGIP-------ASEISSILEKGE---------------------------------------  228 (316)
T ss_pred             HHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHhCCC---------------------------------------
Confidence            999999999997 999996432       111111111000                                       


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                       ....+...+.++.+|+.+||..||.+||++.+++.+
T Consensus       229 -~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~  264 (316)
T cd05108         229 -RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  264 (316)
T ss_pred             -CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence             001122345678999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=6.9e-38  Score=312.20  Aligned_cols=252  Identities=24%  Similarity=0.360  Sum_probs=196.2

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCC-----CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQT-----SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~-----~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .+..++|++.+.||+|+||.||++.....     ...||+|++....  .....+.+|+.+++++.     .|+||++++
T Consensus         8 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~i~~~~   82 (293)
T cd05053           8 ELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----KHKNIINLL   82 (293)
T ss_pred             ccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhc-----CCCCeeeEE
Confidence            34567999999999999999999987643     4789999887542  22345778999998884     588899999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhh--------------ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceecc
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYA--------------DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTD  175 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~--------------~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrD  175 (530)
                      +++..    +..+++||||+ +++|..++...              ....+++..+..++.||+.||.|||++ ||+|||
T Consensus        83 ~~~~~----~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~-~ivH~d  157 (293)
T cd05053          83 GVCTQ----EGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK-KCIHRD  157 (293)
T ss_pred             EEEcC----CCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC-Cccccc
Confidence            99874    46799999999 88999998642              123488999999999999999999997 999999


Q ss_pred             CCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCC
Q 045988          176 LKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVD  255 (530)
Q Consensus       176 IKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (530)
                      |||+|||++.                                                                      
T Consensus       158 lkp~Nil~~~----------------------------------------------------------------------  167 (293)
T cd05053         158 LAARNVLVTE----------------------------------------------------------------------  167 (293)
T ss_pred             cceeeEEEcC----------------------------------------------------------------------
Confidence            9999999954                                                                      


Q ss_pred             CCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCcc
Q 045988          256 AEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYR  330 (530)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~  330 (530)
                                                                    +..++|+|||.+......     .....++..|+
T Consensus       168 ----------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~  201 (293)
T cd05053         168 ----------------------------------------------DHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWM  201 (293)
T ss_pred             ----------------------------------------------CCeEEeCccccccccccccceeccCCCCCCcccc
Confidence                                                          456999999998653321     12223456799


Q ss_pred             CChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcc
Q 045988          331 CPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL  409 (530)
Q Consensus       331 aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  409 (530)
                      |||++.+..++.++|||||||++|+|++ |..||....      .......+..  +                       
T Consensus       202 aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~-----------------------  250 (293)
T cd05053         202 APEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP------VEELFKLLKE--G-----------------------  250 (293)
T ss_pred             CHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCC------HHHHHHHHHc--C-----------------------
Confidence            9999988889999999999999999997 999996432      1111111000  0                       


Q ss_pred             ccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          410 RHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                      .....+...+..+.+|+.+||..||.+|||+.|++++
T Consensus       251 ----------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~  287 (293)
T cd05053         251 ----------------YRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVED  287 (293)
T ss_pred             ----------------CcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence                            0011223446789999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.6e-37  Score=301.17  Aligned_cols=249  Identities=32%  Similarity=0.490  Sum_probs=202.2

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      .|.+.+.||+|+||.||+|.+..+++.|++|++..... ....+.+|+.+++++      .|++|+++++.+..    ..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~----~~   70 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKC------KHPNIVKYYGSYLK----KD   70 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhC------CCCCEeEEEEEEec----CC
Confidence            48899999999999999999998999999999876543 456788999999998      68889999999884    47


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ..+++|||+ +++|.+++.... ..+++..+..++.|++.||++||.+ |++||||+|+||+++.               
T Consensus        71 ~~~l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~-~i~h~dl~p~ni~i~~---------------  133 (253)
T cd05122          71 ELWIVMEFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHSN-GIIHRDIKAANILLTS---------------  133 (253)
T ss_pred             eEEEEEecCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhcC-CEecCCCCHHHEEEcc---------------
Confidence            899999999 699999886542 4589999999999999999999996 9999999999999955               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (253)
T cd05122         134 --------------------------------------------------------------------------------  133 (253)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT  358 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt  358 (530)
                                           ++.++|+|||.+......  .....++..|+|||.+.+..++.++|+|||||++|+|++
T Consensus       134 ---------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~  192 (253)
T cd05122         134 ---------------------DGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAE  192 (253)
T ss_pred             ---------------------CCeEEEeeccccccccccccccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHh
Confidence                                 456999999998765443  245678899999999988888999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |..||...+      ....+..+..  ...+                                     ........+..+
T Consensus       193 g~~p~~~~~------~~~~~~~~~~--~~~~-------------------------------------~~~~~~~~~~~~  227 (253)
T cd05122         193 GKPPYSELP------PMKALFKIAT--NGPP-------------------------------------GLRNPEKWSDEF  227 (253)
T ss_pred             CCCCCCCCc------hHHHHHHHHh--cCCC-------------------------------------CcCcccccCHHH
Confidence            999996432      1111111100  0000                                     000111235789


Q ss_pred             HHHHhhccCcCCCCCcCHHHHhcCCC
Q 045988          439 ADFLVPILDFVPEKRPTAAQCLTHPW  464 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta~elL~hp~  464 (530)
                      .+||.+||+.||.+|||+.++|.|||
T Consensus       228 ~~~i~~~l~~~p~~R~t~~~~l~~~~  253 (253)
T cd05122         228 KDFLKKCLQKNPEKRPTAEQLLKHPF  253 (253)
T ss_pred             HHHHHHHccCChhhCCCHHHHhcCCC
Confidence            99999999999999999999999999

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=4e-39  Score=331.76  Aligned_cols=208  Identities=31%  Similarity=0.448  Sum_probs=178.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC-
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG-  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~-  117 (530)
                      ++-|..-+.||+||||.||+++++.+|+.||||.++..  ....+...+|+++|++|      +|+|||+++++=.... 
T Consensus        12 ~y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKL------nh~NIVk~f~iee~~~~   85 (732)
T KOG4250|consen   12 NYLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKL------NHPNIVKLFDIEETKFL   85 (732)
T ss_pred             CcceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHc------CchhhhhhcccCCcccc
Confidence            46788899999999999999999999999999998874  34567889999999999      7888999999865431 


Q ss_pred             -CCCcEEEEEEecc-CcCHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          118 -PNGQHVCMVFEYL-GENLLTLIKYAD-YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       118 -~~~~~~~lVmE~~-~~~L~~~i~~~~-~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                       -......+||||| +|+|..+++.-. ..++++.+++.++..++.||.|||++ |||||||||+||++....+.     
T Consensus        86 ~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn-~IvHRDlKP~NIvl~~Gedg-----  159 (732)
T KOG4250|consen   86 GLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN-GIVHRDLKPGNIVLQIGEDG-----  159 (732)
T ss_pred             CcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc-CceeccCCCCcEEEeecCCC-----
Confidence             1145678999999 999999997543 34699999999999999999999997 99999999999999652110     


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (732)
T KOG4250|consen  160 --------------------------------------------------------------------------------  159 (732)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcC-CCCCCcchhHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFAC  351 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~  351 (530)
                                                 ....||+|||.|+...  ...++.+||+.|.+||++.. +.|+..+|.|||||
T Consensus       160 ---------------------------q~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~Gv  212 (732)
T KOG4250|consen  160 ---------------------------QSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGV  212 (732)
T ss_pred             ---------------------------ceEEeeecccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhh
Confidence                                       3458999999998653  45788999999999999994 78999999999999


Q ss_pred             HHHHHHhCCCCCCCCC
Q 045988          352 ICFELATGDVLFDPHS  367 (530)
Q Consensus       352 il~elltG~~PF~~~~  367 (530)
                      ++|+++||..||-+..
T Consensus       213 tlY~caTG~lPF~p~~  228 (732)
T KOG4250|consen  213 TLYECATGELPFIPFG  228 (732)
T ss_pred             HHHHHhccCCCCCcCC
Confidence            9999999999997654

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-37  Score=303.05  Aligned_cols=247  Identities=29%  Similarity=0.486  Sum_probs=202.9

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|.+.+.||+|+||.||+|.+..+++.||+|.+....   .....+.+|+++++++      .|+||+++++++.    .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~   70 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNL------KHPNIVKYIGSIE----T   70 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhC------CCCCccEEEEEEE----e
Confidence            5899999999999999999999999999999887654   2456778899999998      6788999999987    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....++||||+ +++|.+++...  ..+++..+..++.|++.||.|||++ ||+||||||+||+++.             
T Consensus        71 ~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~ni~i~~-------------  134 (254)
T cd06627          71 SDSLYIILEYAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHEQ-GVIHRDIKAANILTTK-------------  134 (254)
T ss_pred             CCEEEEEEecCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCHHHEEECC-------------
Confidence            47899999999 78999988744  4589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (254)
T cd06627         135 --------------------------------------------------------------------------------  134 (254)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc---CCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF---TNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~---~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             ++.++|+|||.+.......   ....++..|+|||.+.+..++.++||||||+++|+
T Consensus       135 -----------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~  191 (254)
T cd06627         135 -----------------------DGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIE  191 (254)
T ss_pred             -----------------------CCCEEEeccccceecCCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHH
Confidence                                   4568999999997543322   24567889999999988788999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....         ....+.....                                      .....++...+
T Consensus       192 l~~g~~p~~~~~---------~~~~~~~~~~--------------------------------------~~~~~~~~~~~  224 (254)
T cd06627         192 LLTGNPPYYDLN---------PMAALFRIVQ--------------------------------------DDHPPLPEGIS  224 (254)
T ss_pred             HHhCCCCCCCcc---------HHHHHHHHhc--------------------------------------cCCCCCCCCCC
Confidence            999999995322         1111111100                                      00112233456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      ..+.+||.+||..+|++|||+.++|.||||
T Consensus       225 ~~~~~~i~~~l~~~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         225 PELKDFLMQCFQKDPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             HHHHHHHHHHHhCChhhCcCHHHHhcCCCC
Confidence            789999999999999999999999999998

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=5.4e-38  Score=345.55  Aligned_cols=131  Identities=28%  Similarity=0.444  Sum_probs=115.2

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|.++++||+|+||+||+|++..+++.||||+++...    .....+..|+.+++.+      .|+||+++++++.   
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l------~hp~Iv~~~~~~~---   74 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALS------KSPFIVHLYYSLQ---   74 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhc------CCCCcCeEEEEEE---
Confidence            68999999999999999999999999999999987643    2235677889998888      7888999999887   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                       ...++||||||+ +++|.+++...  ..+++..++.|+.||+.||+|||++ |||||||||+||||+.
T Consensus        75 -~~~~~~lVmEy~~g~~L~~li~~~--~~l~~~~~~~i~~qil~aL~yLH~~-gIiHrDLKP~NILl~~  139 (669)
T cd05610          75 -SANNVYLVMEYLIGGDVKSLLHIY--GYFDEEMAVKYISEVALALDYLHRH-GIIHRDLKPDNMLISN  139 (669)
T ss_pred             -ECCEEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCccHHHEEEcC
Confidence             447899999999 89999998643  3488999999999999999999997 9999999999999954

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=9.4e-38  Score=323.94  Aligned_cols=250  Identities=21%  Similarity=0.335  Sum_probs=194.0

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..++|++.++||+|+||.||+|.+..     ++..||||+++...  ...+.+.+|+.+|+++.     .||||++++++
T Consensus        35 ~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~-----~HpnIv~l~~~  109 (400)
T cd05105          35 PRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLG-----PHLNIVNLLGA  109 (400)
T ss_pred             cccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcC-----CCCCeeeEEEE
Confidence            46789999999999999999998643     34679999987543  23456889999999983     48999999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhc-------------------------------------------------
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYAD-------------------------------------------------  142 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~-------------------------------------------------  142 (530)
                      +.    ....+||||||| +++|.+++....                                                 
T Consensus       110 ~~----~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (400)
T cd05105         110 CT----KSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADT  185 (400)
T ss_pred             Ec----cCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccc
Confidence            98    457899999999 899998875421                                                 


Q ss_pred             ---------------------------------------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCC
Q 045988          143 ---------------------------------------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLK  177 (530)
Q Consensus       143 ---------------------------------------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIK  177 (530)
                                                                   ...+++..+..++.||+.||+|||++ ||+|||||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivH~dik  264 (400)
T cd05105         186 TQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK-NCVHRDLA  264 (400)
T ss_pred             cccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCC
Confidence                                                         12377888899999999999999997 99999999


Q ss_pred             CCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCC
Q 045988          178 PENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAE  257 (530)
Q Consensus       178 p~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (530)
                      |+|||++.                                                                        
T Consensus       265 p~Nill~~------------------------------------------------------------------------  272 (400)
T cd05105         265 ARNVLLAQ------------------------------------------------------------------------  272 (400)
T ss_pred             hHhEEEeC------------------------------------------------------------------------
Confidence            99999965                                                                        


Q ss_pred             CCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCC
Q 045988          258 PNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCP  332 (530)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aP  332 (530)
                                                                  +..++|+|||++......     .....+++.|+||
T Consensus       273 --------------------------------------------~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aP  308 (400)
T cd05105         273 --------------------------------------------GKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAP  308 (400)
T ss_pred             --------------------------------------------CCEEEEEeCCcceeccccccccccCCcCCCcceECh
Confidence                                                        456899999998653221     2233567889999


Q ss_pred             hhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcccc
Q 045988          333 EVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH  411 (530)
Q Consensus       333 E~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  411 (530)
                      |++.+..++.++|||||||++|+|++ |..||.....     +......+..  +                         
T Consensus       309 E~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~-----~~~~~~~~~~--~-------------------------  356 (400)
T cd05105         309 ESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIV-----DSTFYNKIKS--G-------------------------  356 (400)
T ss_pred             hhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccch-----hHHHHHHHhc--C-------------------------
Confidence            99998889999999999999999997 9999964321     0111110000  0                         


Q ss_pred             chhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                    .....+...+.++.+||.+||..||++||++.++.+
T Consensus       357 --------------~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~  392 (400)
T cd05105         357 --------------YRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSD  392 (400)
T ss_pred             --------------CCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHH
Confidence                          001122345678999999999999999999988875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=3.7e-38  Score=313.62  Aligned_cols=249  Identities=22%  Similarity=0.344  Sum_probs=195.5

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ++..+|.+.+.||+|+||.||++.+.     .++..||+|.+.... .....+.+|+.+++++      .|+||++++++
T Consensus         2 ~~~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~   75 (288)
T cd05093           2 IKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL------QHEHIVKFYGV   75 (288)
T ss_pred             CchHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhC------CCCCcceEEEE
Confidence            34578999999999999999999753     346789999877543 3345688999999999      78889999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhcc-----------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADY-----------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~-----------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                      +.    .....++||||+ +++|.+++.....           ..+++..+..++.||+.||+|||++ ||+||||||+|
T Consensus        76 ~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~-~i~H~dlkp~N  150 (288)
T cd05093          76 CV----EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ-HFVHRDLATRN  150 (288)
T ss_pred             Ee----cCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccCcce
Confidence            88    457899999999 8999999864321           2389999999999999999999997 99999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      ||++.                                                                           
T Consensus       151 ili~~---------------------------------------------------------------------------  155 (288)
T cd05093         151 CLVGE---------------------------------------------------------------------------  155 (288)
T ss_pred             EEEcc---------------------------------------------------------------------------
Confidence            99955                                                                           


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhh
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVL  335 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l  335 (530)
                                                               ++.++|+|||++......     .....++..|+|||++
T Consensus       156 -----------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  194 (288)
T cd05093         156 -----------------------------------------NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  194 (288)
T ss_pred             -----------------------------------------CCcEEeccCCccccccCCceeecCCCCCccccccCHHHh
Confidence                                                     456899999998653221     1233457789999999


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchh
Q 045988          336 LGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR  414 (530)
Q Consensus       336 ~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  414 (530)
                      .+..++.++|||||||++|+|++ |.+||....      ....+..+..  +..                          
T Consensus       195 ~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~------~~~~~~~i~~--~~~--------------------------  240 (288)
T cd05093         195 MYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS------NNEVIECITQ--GRV--------------------------  240 (288)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CCc--------------------------
Confidence            98889999999999999999998 999995432      1111111110  000                          


Q ss_pred             cccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                   ...+...+.++.+|+.+||+.||.+|||+.++++
T Consensus       241 -------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~  274 (288)
T cd05093         241 -------------LQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHS  274 (288)
T ss_pred             -------------CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                         0112234578999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=9.5e-38  Score=335.65  Aligned_cols=279  Identities=19%  Similarity=0.243  Sum_probs=183.6

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCC----CeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQT----SHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~----~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +..++|.+.++||+|+||.||+|++..+    +..||+|.+.....      .|+.+..++.+.   .+.+++.++..|.
T Consensus       129 ~~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~------~e~~~~e~l~~~---~~~~~~~~~~~~~  199 (566)
T PLN03225        129 FKKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA------VEIWMNERVRRA---CPNSCADFVYGFL  199 (566)
T ss_pred             CccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch------hHHHHHHHHHhh---chhhHHHHHHhhh
Confidence            3457999999999999999999999988    89999998764322      233333333221   1122333333222


Q ss_pred             ec--CCCCcEEEEEEecc-CcCHHHHHHhhccC------------------CCCHHHHHHHHHHHHHHHHHHHhhCCcee
Q 045988          115 HS--GPNGQHVCMVFEYL-GENLLTLIKYADYR------------------GVPLHMVKEICFHILVGLDHLHRELSIIH  173 (530)
Q Consensus       115 ~~--~~~~~~~~lVmE~~-~~~L~~~i~~~~~~------------------~l~~~~~~~i~~qll~aL~~LH~~~gIvH  173 (530)
                      ..  ...+...+|||||+ +++|.+++......                  ......+..++.||+.||+|||++ ||||
T Consensus       200 ~~~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~-gIiH  278 (566)
T PLN03225        200 EPVSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST-GIVH  278 (566)
T ss_pred             cccccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC-CEEe
Confidence            11  12457899999999 88899888643211                  012345678999999999999997 9999


Q ss_pred             ccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCC
Q 045988          174 TDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTS  253 (530)
Q Consensus       174 rDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (530)
                      |||||+|||++..                                                                   
T Consensus       279 RDLKP~NILl~~~-------------------------------------------------------------------  291 (566)
T PLN03225        279 RDVKPQNIIFSEG-------------------------------------------------------------------  291 (566)
T ss_pred             CcCCHHHEEEeCC-------------------------------------------------------------------
Confidence            9999999999541                                                                   


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCc
Q 045988          254 VDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQY  329 (530)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y  329 (530)
                                                                      ...+||+|||+|.....    .....++|+.|
T Consensus       292 ------------------------------------------------~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y  323 (566)
T PLN03225        292 ------------------------------------------------SGSFKIIDLGAAADLRVGINYIPKEFLLDPRY  323 (566)
T ss_pred             ------------------------------------------------CCcEEEEeCCCccccccccccCCcccccCCCc
Confidence                                                            34699999999975322    23456789999


Q ss_pred             cCChhhcCCC----------------------CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCC
Q 045988          330 RCPEVLLGSK----------------------YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM  387 (530)
Q Consensus       330 ~aPE~l~~~~----------------------~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~  387 (530)
                      +|||.+....                      ++.++|||||||+||||+++..++..        ....+..++...+.
T Consensus       324 ~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~--------~~~~~~~~l~~~~~  395 (566)
T PLN03225        324 AAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDS--------NLIQFNRQLKRNDY  395 (566)
T ss_pred             cChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCch--------HHHHHHHHHHhcCC
Confidence            9999765322                      34466999999999999997665521        22233333333332


Q ss_pred             CchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          388 MPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       388 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      ....+.....                    ..........+...........+||.+||++||.+|||+.|+|+||||+.
T Consensus       396 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~Hpff~~  455 (566)
T PLN03225        396 DLVAWRKLVE--------------------PRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAALAHPYFDR  455 (566)
T ss_pred             cHHHHHHhhc--------------------cccchhhhhhhhhccccchHHHHHHHHHccCCcccCCCHHHHhCCcCcCC
Confidence            2211110000                    00000011111122223456779999999999999999999999999986


Q ss_pred             CCC
Q 045988          468 GPR  470 (530)
Q Consensus       468 ~~~  470 (530)
                      ...
T Consensus       456 ~~~  458 (566)
T PLN03225        456 EGL  458 (566)
T ss_pred             CCc
Confidence            543

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=1.1e-37  Score=305.34  Aligned_cols=245  Identities=24%  Similarity=0.385  Sum_probs=194.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|.+.++||+|+||.||+|.+..++ .+|+|.+.......+.+.+|+++++++      .|+||+++++++..     
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~-~~~lK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~-----   72 (260)
T cd05069           5 RESLRLDVKLGQGCFGEVWMGTWNGTT-KVAIKTLKPGTMMPEAFLQEAQIMKKL------RHDKLVPLYAVVSE-----   72 (260)
T ss_pred             hHHeeeeeeecCcCCCeEEEEEEcCCc-eEEEEEcccCCccHHHHHHHHHHHHhC------CCCCeeeEEEEEcC-----
Confidence            478999999999999999999876554 599998876655567788999999999      78889999988752     


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...++||||+ +++|.+++.......+++..+..++.||+.||.|||++ ||+||||||+|||++.              
T Consensus        73 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~dl~~~Nill~~--------------  137 (260)
T cd05069          73 EPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM-NYIHRDLRAANILVGD--------------  137 (260)
T ss_pred             CCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeecccCcceEEEcC--------------
Confidence            4578999999 77999999765444588999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (260)
T cd05069         138 --------------------------------------------------------------------------------  137 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                            +..++|+|||.+......    .....++..|+|||.+.+..++.++|||||||++|+
T Consensus       138 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~e  195 (260)
T cd05069         138 ----------------------NLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE  195 (260)
T ss_pred             ----------------------CCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHH
Confidence                                  456899999999654221    122345678999999988889999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          356 LAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       356 llt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |++ |.+||....      .......+..   ..                                      ....+...
T Consensus       196 l~t~g~~p~~~~~------~~~~~~~~~~---~~--------------------------------------~~~~~~~~  228 (260)
T cd05069         196 LVTKGRVPYPGMV------NREVLEQVER---GY--------------------------------------RMPCPQGC  228 (260)
T ss_pred             HHhCCCCCCCCCC------HHHHHHHHHc---CC--------------------------------------CCCCCccc
Confidence            999 899996432      1111111110   00                                      00122345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +..+.+|+.+||..||.+||+++++++
T Consensus       229 ~~~~~~li~~~l~~~p~~Rp~~~~i~~  255 (260)
T cd05069         229 PESLHELMKLCWKKDPDERPTFEYIQS  255 (260)
T ss_pred             CHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            678999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-37  Score=304.55  Aligned_cols=247  Identities=24%  Similarity=0.386  Sum_probs=198.5

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|.+.++||+|+||.||+|.+. +++.||||.+.........+.+|+.+++++      .|+||+++++++.    .
T Consensus         4 ~~~~~~i~~~ig~g~~~~v~~~~~~-~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   72 (261)
T cd05034           4 PRESLKLERKLGAGQFGEVWMGTWN-GTTKVAVKTLKPGTMSPEAFLQEAQIMKKL------RHDKLVQLYAVCS----E   72 (261)
T ss_pred             chhheeeeeeeccCcceEEEEEEEc-CCceEEEEEecCCccCHHHHHHHHHHHhhC------CCCCEeeeeeeee----c
Confidence            3578999999999999999999865 457899999887666667889999999998      7888999999987    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....++||||+ +++|.+++.......++...+..++.||+.||.|||++ ||+|+||||+|||++.             
T Consensus        73 ~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~-~i~h~di~p~nili~~-------------  138 (261)
T cd05034          73 EEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR-NYIHRDLAARNILVGE-------------  138 (261)
T ss_pred             CCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcchheEEEcC-------------
Confidence            46799999999 88999999765545689999999999999999999997 9999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (261)
T cd05034         139 --------------------------------------------------------------------------------  138 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                             +..++|+|||.+......    .....++..|+|||.+.+..++.++|||||||++|
T Consensus       139 -----------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~  195 (261)
T cd05034         139 -----------------------NLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLT  195 (261)
T ss_pred             -----------------------CCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHH
Confidence                                   457899999998654321    11223456899999999888999999999999999


Q ss_pred             HHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +|++ |..||.+..      ....+..+...+                                         ....+..
T Consensus       196 ~l~t~g~~p~~~~~------~~~~~~~~~~~~-----------------------------------------~~~~~~~  228 (261)
T cd05034         196 EIVTYGRVPYPGMT------NREVLEQVERGY-----------------------------------------RMPRPPN  228 (261)
T ss_pred             HHHhCCCCCCCCCC------HHHHHHHHHcCC-----------------------------------------CCCCCCC
Confidence            9998 999996432      122222211100                                         0011223


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+..+.+++.+||..||.+||++++++.
T Consensus       229 ~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  256 (261)
T cd05034         229 CPEELYDLMLQCWDKDPEERPTFEYLQS  256 (261)
T ss_pred             CCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            3568899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=8.1e-38  Score=306.05  Aligned_cols=248  Identities=28%  Similarity=0.467  Sum_probs=196.3

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc------ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA------QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~------~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      +|.+.++||+|+||.||+|.+..++..+++|+.+..      ......+.+|+.+++.+      +||||+++++.+.  
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~--   72 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKL------DHPAIVKFHASFL--   72 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhC------CCCcHHHHHHHHh--
Confidence            699999999999999999999888777777776542      12234566788888888      7889999999987  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                        .....++||||+ +++|..++...  ....+++..++.++.||+.||.|||++ ||+|+||||+||++..        
T Consensus        73 --~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i~h~~l~~~nili~~--------  141 (260)
T cd08222          73 --ERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR-RILHRDLKAKNIFLKN--------  141 (260)
T ss_pred             --cCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc-CccccCCChhheEeec--------
Confidence              446799999999 88998887642  234589999999999999999999997 9999999999999943        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (260)
T cd08222         142 --------------------------------------------------------------------------------  141 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                   ..++|+|||.+......   .....|++.|+|||.+.+..++.++|+||||
T Consensus       142 -----------------------------~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG  192 (260)
T cd08222         142 -----------------------------NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLG  192 (260)
T ss_pred             -----------------------------CCEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHH
Confidence                                         24899999998654222   2334578899999999888899999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      +++|+|++|..||....         ....+.......                                      ...+
T Consensus       193 ~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~--------------------------------------~~~~  225 (260)
T cd08222         193 CILYEMCCLAHAFEGQN---------FLSVVLRIVEGP--------------------------------------TPSL  225 (260)
T ss_pred             HHHHHHHhCCCCCCCcc---------HHHHHHHHHcCC--------------------------------------CCCC
Confidence            99999999999995321         122222111100                                      0112


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      +...+.++.+||.+||..||++||++.|+++||||
T Consensus       226 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         226 PETYSRQLNSIMQSMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             cchhcHHHHHHHHHHhcCChhhCcCHHHHhhCCCC
Confidence            33456789999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=1.5e-37  Score=313.22  Aligned_cols=253  Identities=24%  Similarity=0.371  Sum_probs=199.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      +.|...++||+|+||+||+|.+..+++.||||++....    .....+.+|+.+++.+      .||||+++++++.   
T Consensus        21 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~---   91 (313)
T cd06633          21 EIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQL------KHPNTIEYKGCYL---   91 (313)
T ss_pred             HHhhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhC------CCCCCccEEEEEE---
Confidence            34777889999999999999999999999999876432    2234567899999998      7888999999998   


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       .....|+||||+.++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+||++..            
T Consensus        92 -~~~~~~lv~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~al~~LH~~-gi~H~dl~p~nili~~------------  156 (313)
T cd06633          92 -KEHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSH-NMIHRDIKAGNILLTE------------  156 (313)
T ss_pred             -eCCEEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCChhhEEECC------------
Confidence             447899999999888888876433 4589999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (313)
T cd06633         157 --------------------------------------------------------------------------------  156 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhc---CCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLL---GSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~---~~~~~~~~DiWSlG~il~  354 (530)
                                              +..++|+|||++.... ......|+..|+|||++.   ...++.++|||||||++|
T Consensus       157 ------------------------~~~~kL~dfg~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~  211 (313)
T cd06633         157 ------------------------PGQVKLADFGSASKSS-PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI  211 (313)
T ss_pred             ------------------------CCCEEEeecCCCcccC-CCCCccccccccChhhccccCCCCCCchhhHHHHHHHHH
Confidence                                    4569999999986432 234557899999999985   345888999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||....      ....+..+..  +..+.                                      ......
T Consensus       212 el~~g~~p~~~~~------~~~~~~~~~~--~~~~~--------------------------------------~~~~~~  245 (313)
T cd06633         212 ELAERKPPLFNMN------AMSALYHIAQ--NDSPT--------------------------------------LQSNEW  245 (313)
T ss_pred             HHHhCCCCCCCCC------hHHHHHHHHh--cCCCC--------------------------------------CCcccc
Confidence            9999999995332      1111111100  00000                                      011223


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +..+.+||.+||+.+|.+||++.++|.||||...+
T Consensus       246 ~~~l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~~~  280 (313)
T cd06633         246 TDSFRGFVDYCLQKIPQERPASAELLRHDFVRRDR  280 (313)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCc
Confidence            46789999999999999999999999999999655

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.7e-38  Score=306.65  Aligned_cols=245  Identities=20%  Similarity=0.343  Sum_probs=194.4

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      .+|++.+.||+|+||.||+|.+. ++..+|+|++.........+.+|+.+++.+      .|+||+++++++.    ...
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~-~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~~~   72 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWR-GKIDVAIKMIREGAMSEDDFIEEAKVMMKL------SHPNLVQLYGVCT----KQR   72 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEec-CCccEEEEEeccCCCCHHHHHHHHHHHHhC------CCCCEEEEEEEEc----CCC
Confidence            46899999999999999999875 467899999876555556788899999998      7888999999987    446


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ..|+||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+||+++.               
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dl~p~ni~i~~---------------  135 (256)
T cd05059          73 PIFIVTEYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESN-GFIHRDLAARNCLVGE---------------  135 (256)
T ss_pred             ceEEEEecCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CcccccccHhhEEECC---------------
Confidence            899999999 889999886433 2589999999999999999999997 9999999999999954               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (256)
T cd05059         136 --------------------------------------------------------------------------------  135 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccccc-CCC---CCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-TND---IQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-~~~---~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                           ++.++|+|||.+....... ...   .++..|+|||.+.+..++.++|||||||++|+|
T Consensus       136 ---------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l  194 (256)
T cd05059         136 ---------------------DNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEV  194 (256)
T ss_pred             ---------------------CCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHH
Confidence                                 4569999999986543221 111   234579999999988899999999999999999


Q ss_pred             Hh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          357 AT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       357 lt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      ++ |.+||....      .......+....                                         ....+...+
T Consensus       195 ~~~g~~p~~~~~------~~~~~~~~~~~~-----------------------------------------~~~~~~~~~  227 (256)
T cd05059         195 FSEGKMPYERFS------NSEVVESVSAGY-----------------------------------------RLYRPKLAP  227 (256)
T ss_pred             hccCCCCCCCCC------HHHHHHHHHcCC-----------------------------------------cCCCCCCCC
Confidence            99 899996432      111111111000                                         011223356


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..+.+|+.+||+.+|++|||+.|+++.
T Consensus       228 ~~~~~li~~cl~~~p~~Rpt~~~~l~~  254 (256)
T cd05059         228 TEVYTIMYSCWHEKPEDRPAFKKLLSQ  254 (256)
T ss_pred             HHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence            789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=3.3e-38  Score=308.87  Aligned_cols=245  Identities=23%  Similarity=0.399  Sum_probs=198.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .+|++.++||.|+||.||+|.+.. +..+|+|++..... ....+.+|+.+++.+      +|+||+++++++.    ..
T Consensus         6 ~~y~~~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~~   74 (261)
T cd05148           6 EEFTLERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDDLLKQQDFQKEVQALKRL------RHKHLISLFAVCS----VG   74 (261)
T ss_pred             HHHHHhhhhccCCCccEEEeEecC-CCcEEEEeccccchhhHHHHHHHHHHHhcC------CCcchhheeeeEe----cC
Confidence            579999999999999999999877 88999999876644 456788899999988      7888999999988    44


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...++||||+ +++|.+++.......++...+..++.||+.||.|||++ ||+||||||+|||++.              
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~h~dl~~~nilv~~--------------  139 (261)
T cd05148          75 EPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQ-NSIHRDLAARNILVGE--------------  139 (261)
T ss_pred             CCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccCcceEEEcC--------------
Confidence            7899999999 88999999765555689999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (261)
T cd05148         140 --------------------------------------------------------------------------------  139 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            +..++|+|||.+......   .....++..|+|||++.+..++.++|||||||++|+|
T Consensus       140 ----------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l  197 (261)
T cd05148         140 ----------------------DLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEM  197 (261)
T ss_pred             ----------------------CceEEEccccchhhcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHH
Confidence                                  457999999998654322   1233456789999999888899999999999999999


Q ss_pred             Hh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          357 AT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       357 lt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      ++ |..||....      ....+..+...                                         .....+...+
T Consensus       198 ~~~g~~p~~~~~------~~~~~~~~~~~-----------------------------------------~~~~~~~~~~  230 (261)
T cd05148         198 FTYGQVPYPGMN------NHEVYDQITAG-----------------------------------------YRMPCPAKCP  230 (261)
T ss_pred             HcCCCCCCCcCC------HHHHHHHHHhC-----------------------------------------CcCCCCCCCC
Confidence            98 899996433      11122211100                                         0011223456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +.+.++|.+||+.||.+|||+.++++
T Consensus       231 ~~~~~~i~~~l~~~p~~Rpt~~~l~~  256 (261)
T cd05148         231 QEIYKIMLECWAAEPEDRPSFKALRE  256 (261)
T ss_pred             HHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            78999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=1.7e-37  Score=311.12  Aligned_cols=252  Identities=23%  Similarity=0.361  Sum_probs=196.8

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEe-----CCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWD-----TQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~-----~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .+..++|.+.+.||+|+||.||+|.+     ..++..||+|+++...  ...+.+.+|+.+++++.     .|+||++++
T Consensus        31 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~  105 (302)
T cd05055          31 EFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLG-----NHENIVNLL  105 (302)
T ss_pred             cccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhcc-----CCCCcceEE
Confidence            44567999999999999999999975     3346789999887643  22456788999999984     588899999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      +.+..    ....++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+|+||||+|||++.    
T Consensus       106 ~~~~~----~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~-~ivH~dlkp~Nil~~~----  176 (302)
T cd05055         106 GACTI----GGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK-NCIHRDLAARNVLLTH----  176 (302)
T ss_pred             EEEec----CCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeehhhhccceEEEcC----
Confidence            99884    46799999999 89999998754444489999999999999999999997 9999999999999954    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (302)
T cd05055         177 --------------------------------------------------------------------------------  176 (302)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcc
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPA  344 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~  344 (530)
                                                      ...++|+|||++......     .....++..|+|||++.+..++.++
T Consensus       177 --------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  224 (302)
T cd05055         177 --------------------------------GKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFES  224 (302)
T ss_pred             --------------------------------CCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHh
Confidence                                            456899999998643221     1223457789999999988899999


Q ss_pred             hhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhh
Q 045988          345 DLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       345 DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      |||||||++|+|++ |.+||.....      .......... +.                                    
T Consensus       225 DiwslGvil~el~t~g~~p~~~~~~------~~~~~~~~~~-~~------------------------------------  261 (302)
T cd05055         225 DVWSYGILLWEIFSLGSNPYPGMPV------DSKFYKLIKE-GY------------------------------------  261 (302)
T ss_pred             HHHHHHHHHHHHHhCCCCCcCCCCc------hHHHHHHHHc-CC------------------------------------
Confidence            99999999999998 9999964321      1111111000 00                                    


Q ss_pred             hhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       424 ~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                         ....+...+..+.+|+.+||..+|++|||+.|++.
T Consensus       262 ---~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~  296 (302)
T cd05055         262 ---RMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQ  296 (302)
T ss_pred             ---cCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence               00112234578999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=6.3e-38  Score=305.38  Aligned_cols=239  Identities=21%  Similarity=0.354  Sum_probs=187.3

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ++||+|+||.||+|++..+++.||+|.+...  ......+.+|+++++++      .||||+++++++.    .....++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~~~~~~l   70 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQY------SHPNIVRLIGVCT----QKQPIYI   70 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhC------CCCCcceEEEEEc----CCCCeEE
Confidence            4699999999999999999999999987643  22346688999999998      7888999999988    4468999


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccc
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLT  204 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~  204 (530)
                      ||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.                   
T Consensus        71 v~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dl~p~nil~~~-------------------  129 (252)
T cd05084          71 VMELVQGGDFLTFLRTE-GPRLKVKELIQMVENAAAGMEYLESK-HCIHRDLAARNCLVTE-------------------  129 (252)
T ss_pred             EEeeccCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhC-CccccccchheEEEcC-------------------
Confidence            99999 88999988643 23488999999999999999999997 9999999999999954                   


Q ss_pred             ccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 045988          205 KKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK  284 (530)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (530)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (252)
T cd05084         130 --------------------------------------------------------------------------------  129 (252)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCchhhhhhhhhcccceEEecCCccccccccc-C----CCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-
Q 045988          285 DCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-T----NDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-  358 (530)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-~----~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-  358 (530)
                                       +..++|+|||.+....... .    ...++..|+|||.+.+..++.++|||||||++|+|++ 
T Consensus       130 -----------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~  192 (252)
T cd05084         130 -----------------KNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSL  192 (252)
T ss_pred             -----------------CCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhC
Confidence                             4569999999986532211 1    1122456999999988889999999999999999997 


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |.+||....      .......+..  +                                       .....+...+..+
T Consensus       193 ~~~p~~~~~------~~~~~~~~~~--~---------------------------------------~~~~~~~~~~~~~  225 (252)
T cd05084         193 GAVPYANLS------NQQTREAIEQ--G---------------------------------------VRLPCPELCPDAV  225 (252)
T ss_pred             CCCCccccC------HHHHHHHHHc--C---------------------------------------CCCCCcccCCHHH
Confidence            889995322      1111111100  0                                       0011223446789


Q ss_pred             HHHHhhccCcCCCCCcCHHHHhc
Q 045988          439 ADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+|+.+||+.||++|||+.++++
T Consensus       226 ~~li~~~l~~~p~~Rps~~~~~~  248 (252)
T cd05084         226 YRLMERCWEYDPGQRPSFSTVHQ  248 (252)
T ss_pred             HHHHHHHcCCChhhCcCHHHHHH
Confidence            99999999999999999999975

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.1e-37  Score=309.19  Aligned_cols=257  Identities=25%  Similarity=0.273  Sum_probs=193.0

Q ss_pred             CCE-EEEEEeccccceEEEEEE----eCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           42 GRY-VVQSKLGWGHFSTVWLAW----DTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        42 ~~y-~i~~~LG~G~fg~Vy~a~----~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ++| ++++.||+|+||+||++.    ...++..||+|+++....  ....+.+|+++|+++      .||||+++++++.
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~   76 (283)
T cd05080           3 KRYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTL------YHENIVKYKGCCS   76 (283)
T ss_pred             hhhceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhC------CCCCEeeEEEEEe
Confidence            455 999999999999998865    335688999999876432  356678899999999      7888999999876


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      ..  ....+++||||+ +++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        77 ~~--~~~~~~lv~e~~~~~~l~~~~~~---~~l~~~~~~~i~~~l~~~l~~lH~~-~i~H~dlkp~Nili~~--------  142 (283)
T cd05080          77 EQ--GGKGLQLIMEYVPLGSLRDYLPK---HKLNLAQLLLFAQQICEGMAYLHSQ-HYIHRDLAARNVLLDN--------  142 (283)
T ss_pred             cC--CCceEEEEecCCCCCCHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccChheEEEcC--------
Confidence            53  346789999999 8899998864   3499999999999999999999997 9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (283)
T cd05080         143 --------------------------------------------------------------------------------  142 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                  +..++|+|||++......      .....++..|+|||++.+..++.++|||
T Consensus       143 ----------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~  194 (283)
T cd05080         143 ----------------------------DRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVW  194 (283)
T ss_pred             ----------------------------CCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccH
Confidence                                        456899999998654321      1222456679999999888899999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHH-HhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh--
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMME-LLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL--  424 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~-~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  424 (530)
                      ||||++|+|++|+.||......        ...+.. ..+.....                .           .....  
T Consensus       195 slG~~l~el~tg~~p~~~~~~~--------~~~~~~~~~~~~~~~----------------~-----------~~~~~~~  239 (283)
T cd05080         195 SFGVTLYELLTHCDSKQSPPKK--------FEEMIGPKQGQMTVV----------------R-----------LIELLER  239 (283)
T ss_pred             HHHHHHHHHHhCCCCCCCCcch--------hhhhhcccccccchh----------------h-----------hhhhhhc
Confidence            9999999999999998532210        000000 00000000                0           00000  


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ......+...+..+.+|+.+||..||.+|||+++++.
T Consensus       240 ~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         240 GMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence            0011223445688999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.3e-37  Score=309.96  Aligned_cols=255  Identities=25%  Similarity=0.361  Sum_probs=199.9

Q ss_pred             CEEEEEEeccccceEEEEEEeC---CCCeEEEEEEecccc-----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~-----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      .|++.+.||.|+||.||+|.+.   .+|+.||+|+++...     ...+.+.+|++++.++.     +|++|+++++.|.
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~-----~~~~i~~~~~~~~   75 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-----QSPFLVTLHYAFQ   75 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcc-----cCCChhceeeEee
Confidence            4899999999999999999875   478999999987532     22356778999999885     5789999999988


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          .+..+|+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ |++||||||+|||++.        
T Consensus        76 ----~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~-~i~H~dl~p~nil~~~--------  140 (290)
T cd05613          76 ----TDTKLHLILDYINGGELFTHLSQR--ERFKEQEVQIYSGEIVLALEHLHKL-GIIYRDIKLENILLDS--------  140 (290)
T ss_pred             ----cCCeEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeEECC--------
Confidence                447899999999 88999988643  4588999999999999999999997 9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (290)
T cd05613         141 --------------------------------------------------------------------------------  140 (290)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCC--CCCCcchhH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGS--KYSTPADLW  347 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~--~~~~~~DiW  347 (530)
                                                  +..++|+|||++......    .....|+..|+|||.+.+.  .++.++|||
T Consensus       141 ----------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~  192 (290)
T cd05613         141 ----------------------------NGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWW  192 (290)
T ss_pred             ----------------------------CCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHH
Confidence                                        456999999998653221    2245689999999998753  478899999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|..||.....      ......+....                                      ....
T Consensus       193 slG~~l~~ll~g~~p~~~~~~------~~~~~~~~~~~--------------------------------------~~~~  228 (290)
T cd05613         193 SMGVLMYELLTGASPFTVDGE------KNSQAEISRRI--------------------------------------LKSE  228 (290)
T ss_pred             HHHHHHHHHhcCCCCCCcCCc------cccHHHHHHHh--------------------------------------hccC
Confidence            999999999999999953221      11111111100                                      0001


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVGP  469 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~~  469 (530)
                      ..++...++.+.+||.+||..||.+||     ++.+++.||||+...
T Consensus       229 ~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~  275 (290)
T cd05613         229 PPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKIN  275 (290)
T ss_pred             CCCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccccCC
Confidence            112334567889999999999999997     899999999998653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-40  Score=354.63  Aligned_cols=254  Identities=28%  Similarity=0.394  Sum_probs=208.1

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      -+|+-...||.|.||.||-|.+..+|...|+|-++..   ......+.+|..+|..|      +|||+|++|++=.+   
T Consensus      1235 ~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~l------nHpNlV~YyGVEvH--- 1305 (1509)
T KOG4645|consen 1235 FRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGL------NHPNLVRYYGVEVH--- 1305 (1509)
T ss_pred             eeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhc------cCccccccCceeec---
Confidence            3677788999999999999999999999999965543   22344567899999999      88999999999874   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       .+.++|.|||| +|+|.+++....  ..++...+.+..|++.||+|||++ |||||||||+||+|+.            
T Consensus      1306 -Rekv~IFMEyC~~GsLa~ll~~gr--i~dE~vt~vyt~qll~gla~LH~~-gIVHRDIK~aNI~Ld~------------ 1369 (1509)
T KOG4645|consen 1306 -REKVYIFMEYCEGGSLASLLEHGR--IEDEMVTRVYTKQLLEGLAYLHEH-GIVHRDIKPANILLDF------------ 1369 (1509)
T ss_pred             -HHHHHHHHHHhccCcHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHhc-CceecCCCccceeeec------------
Confidence             47899999999 999999997443  378888999999999999999998 9999999999999966            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus      1370 -------------------------------------------------------------------------------- 1369 (1509)
T KOG4645|consen 1370 -------------------------------------------------------------------------------- 1369 (1509)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcCC---CCCCcchhH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLGS---KYSTPADLW  347 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~~---~~~~~~DiW  347 (530)
                                              .+.+|++|||.|......       ....+||+.|||||++.+.   +.+.++|||
T Consensus      1370 ------------------------~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiW 1425 (1509)
T KOG4645|consen 1370 ------------------------NGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIW 1425 (1509)
T ss_pred             ------------------------CCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhh
Confidence                                    467999999999764332       3456899999999999864   477899999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||+..||+||+.||..     ++   ...+.|+.+-                                      .-+.
T Consensus      1426 slGCVVlEM~tGkrPW~~-----~d---ne~aIMy~V~--------------------------------------~gh~ 1459 (1509)
T KOG4645|consen 1426 SLGCVVLEMATGKRPWAE-----LD---NEWAIMYHVA--------------------------------------AGHK 1459 (1509)
T ss_pred             cccceEEEeecCCCchhh-----cc---chhHHHhHHh--------------------------------------ccCC
Confidence            999999999999999952     21   1222333221                                      1122


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      +.+|...+.+.+|||..||..||.+|+++.|+|.|-|-+.+..
T Consensus      1460 Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~~f~~~~~d 1502 (1509)
T KOG4645|consen 1460 PQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEHAFGKSCTD 1502 (1509)
T ss_pred             CCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHhhccccccc
Confidence            3456668899999999999999999999999999999886543

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=1.1e-37  Score=311.54  Aligned_cols=248  Identities=19%  Similarity=0.275  Sum_probs=192.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCe--EEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSH--YVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~--~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.+.||+|+||.||+|....++.  .+|+|.++..  ....+.+.+|+.++.++.     +||||+++++++.   
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~~~~~---   73 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLG-----HHPNIINLLGACE---   73 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhc-----CCCchhheEEEEc---
Confidence            579999999999999999999877764  5788877642  223456788999998884     5889999999987   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEE
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYAD--------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~--------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NIL  182 (530)
                       .....|+||||+ +++|.+++....              ...+++..++.++.||+.||+|||++ ||+||||||+|||
T Consensus        74 -~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~-~ivH~dlkp~Nil  151 (297)
T cd05089          74 -NRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK-QFIHRDLAARNVL  151 (297)
T ss_pred             -cCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCcCCcceEE
Confidence             446799999999 889999986432              12478899999999999999999997 9999999999999


Q ss_pred             EeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 045988          183 LMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDS  262 (530)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (530)
                      ++.                                                                             
T Consensus       152 l~~-----------------------------------------------------------------------------  154 (297)
T cd05089         152 VGE-----------------------------------------------------------------------------  154 (297)
T ss_pred             ECC-----------------------------------------------------------------------------
Confidence            954                                                                             


Q ss_pred             cccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCC--CCCCCCccCChhhcCCCC
Q 045988          263 VEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSKY  340 (530)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~--~~gt~~y~aPE~l~~~~~  340 (530)
                                                             +..++|+|||++.........  ...+..|+|||++.+..+
T Consensus       155 ---------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  195 (297)
T cd05089         155 ---------------------------------------NLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVY  195 (297)
T ss_pred             ---------------------------------------CCeEEECCcCCCccccceeccCCCCcCccccCchhhccCCC
Confidence                                                   456899999998643222111  223457999999998889


Q ss_pred             CCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          341 STPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       341 ~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      +.++|||||||++|+|++ |.+||.....      ......+   ...                                
T Consensus       196 ~~~~DvwSlG~il~el~t~g~~pf~~~~~------~~~~~~~---~~~--------------------------------  234 (297)
T cd05089         196 TTKSDVWSFGVLLWEIVSLGGTPYCGMTC------AELYEKL---PQG--------------------------------  234 (297)
T ss_pred             CchhhHHHHHHHHHHHHcCCCCCCCCCCH------HHHHHHH---hcC--------------------------------
Confidence            999999999999999997 9999964321      1111111   000                                


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                            .....+...+..+.+||.+||..||.+||+++++++.
T Consensus       235 ------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~  271 (297)
T cd05089         235 ------YRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQ  271 (297)
T ss_pred             ------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                  0011223456789999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-37  Score=307.37  Aligned_cols=248  Identities=23%  Similarity=0.368  Sum_probs=195.0

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCC-----CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQT-----SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~-----~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..++|.+.+.||+|+||.||+|.+...     +..||+|.+....  .....+.+|+.+++.+      .|+||++++++
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~   77 (277)
T cd05032           4 PREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEF------NCHHVVRLLGV   77 (277)
T ss_pred             chHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhC------CCCceeEEEEE
Confidence            357899999999999999999987643     4899999976543  2234577899999888      78889999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEE
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL  183 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl  183 (530)
                      +.    .....++||||+ +++|.+++.....        ..+++..+..++.||+.||.|||++ ||+||||||+|||+
T Consensus        78 ~~----~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~di~p~nill  152 (277)
T cd05032          78 VS----TGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK-KFVHRDLAARNCMV  152 (277)
T ss_pred             Ec----CCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccccChheEEE
Confidence            88    447899999999 8899999864321        2367889999999999999999997 99999999999999


Q ss_pred             eeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 045988          184 MSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSV  263 (530)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (530)
                      +.                                                                              
T Consensus       153 ~~------------------------------------------------------------------------------  154 (277)
T cd05032         153 AE------------------------------------------------------------------------------  154 (277)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            55                                                                              


Q ss_pred             ccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCC
Q 045988          264 EDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~  338 (530)
                                                            ++.++|+|||++......     .....++..|+|||.+.+.
T Consensus       155 --------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  196 (277)
T cd05032         155 --------------------------------------DLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDG  196 (277)
T ss_pred             --------------------------------------CCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcC
Confidence                                                  457899999998653221     2334567889999999888


Q ss_pred             CCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          339 KYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                      .++.++|||||||++|+|++ |..||...+.      ......+ . .+.                              
T Consensus       197 ~~~~~~Di~slG~il~el~t~g~~p~~~~~~------~~~~~~~-~-~~~------------------------------  238 (277)
T cd05032         197 VFTTKSDVWSFGVVLWEMATLAEQPYQGLSN------EEVLKFV-I-DGG------------------------------  238 (277)
T ss_pred             CCCcccchHHHHHHHHHhhccCCCCCccCCH------HHHHHHH-h-cCC------------------------------
Confidence            89999999999999999998 9999964321      1111111 0 000                              


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                               ....+...+..+.+||.+||+.+|.+|||+.++++
T Consensus       239 ---------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  273 (277)
T cd05032         239 ---------HLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVS  273 (277)
T ss_pred             ---------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                     01123334678999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=1.3e-37  Score=312.53  Aligned_cols=250  Identities=24%  Similarity=0.365  Sum_probs=194.2

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCC-------CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQ-------TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~-------~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      ..++|.+.+.||+|+||.||+|.+..       +...||+|+++...  .....+.+|+.+++++.     .|+||++++
T Consensus        16 ~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~   90 (307)
T cd05098          16 PRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-----KHKNIINLL   90 (307)
T ss_pred             ehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhc-----CCCCEeeEE
Confidence            35789999999999999999998643       23579999987542  23356778999998884     588999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceecc
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTD  175 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrD  175 (530)
                      +++.    .....|+||||+ +++|.+++.....              ..++...+..++.||+.||+|||++ ||+|||
T Consensus        91 ~~~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~-gi~H~d  165 (307)
T cd05098          91 GACT----QDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK-KCIHRD  165 (307)
T ss_pred             EEEe----cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC-Cccccc
Confidence            9988    446899999999 8899999975421              2478899999999999999999997 999999


Q ss_pred             CCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCC
Q 045988          176 LKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVD  255 (530)
Q Consensus       176 IKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (530)
                      |||+|||++.                                                                      
T Consensus       166 lkp~Nill~~----------------------------------------------------------------------  175 (307)
T cd05098         166 LAARNVLVTE----------------------------------------------------------------------  175 (307)
T ss_pred             ccHHheEEcC----------------------------------------------------------------------
Confidence            9999999954                                                                      


Q ss_pred             CCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCcc
Q 045988          256 AEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYR  330 (530)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~  330 (530)
                                                                    +..++|+|||.+......     .....++..|+
T Consensus       176 ----------------------------------------------~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~  209 (307)
T cd05098         176 ----------------------------------------------DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWM  209 (307)
T ss_pred             ----------------------------------------------CCcEEECCCcccccccccchhhccccCCCcccee
Confidence                                                          456899999998653221     11223456899


Q ss_pred             CChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcc
Q 045988          331 CPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL  409 (530)
Q Consensus       331 aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  409 (530)
                      |||++.+..++.++|||||||++|+|++ |..||....       ...+...... +                       
T Consensus       210 aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~-------~~~~~~~~~~-~-----------------------  258 (307)
T cd05098         210 APEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP-------VEELFKLLKE-G-----------------------  258 (307)
T ss_pred             ChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC-------HHHHHHHHHc-C-----------------------
Confidence            9999998889999999999999999998 889985322       1111111100 0                       


Q ss_pred             ccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          410 RHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                      .....+...+.++.+||.+||..+|.+|||+.+++++
T Consensus       259 ----------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~  295 (307)
T cd05098         259 ----------------HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  295 (307)
T ss_pred             ----------------CCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence                            0012233456789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=1.1e-37  Score=318.23  Aligned_cols=253  Identities=26%  Similarity=0.379  Sum_probs=194.0

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEe-----CCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWD-----TQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~-----~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..++|++.++||+|+||.||+|.+     ..+++.||||+++...  .....+.+|+.+|.++.     +|+||+++++
T Consensus         4 ~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~niv~~~~   78 (343)
T cd05103           4 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVVNLLG   78 (343)
T ss_pred             cchhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhcc-----CCccHhhhcc
Confidence            3467999999999999999999984     3567899999987543  22456788999999985     5789999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhc------------------------------------------------
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD------------------------------------------------  142 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~------------------------------------------------  142 (530)
                      ++...   +..+++||||| +++|.+++....                                                
T Consensus        79 ~~~~~---~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (343)
T cd05103          79 ACTKP---GGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEE  155 (343)
T ss_pred             eeecC---CCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCC
Confidence            88643   35789999999 899999886421                                                


Q ss_pred             -----------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccc
Q 045988          143 -----------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTK  205 (530)
Q Consensus       143 -----------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~  205 (530)
                                       ...++...+..++.||+.||+|||++ ||+||||||+|||++.                    
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dikp~Nil~~~--------------------  214 (343)
T cd05103         156 KSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASR-KCIHRDLAARNILLSE--------------------  214 (343)
T ss_pred             CccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCccCeEEEcC--------------------
Confidence                             01267778889999999999999997 9999999999999954                    


Q ss_pred             cccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccccccc
Q 045988          206 KDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKD  285 (530)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (530)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (343)
T cd05103         215 --------------------------------------------------------------------------------  214 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-C
Q 045988          286 CKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-G  359 (530)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G  359 (530)
                                      +..++|+|||++......     .....++..|+|||++.+..++.++|||||||++|+|++ |
T Consensus       215 ----------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g  278 (343)
T cd05103         215 ----------------NNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLG  278 (343)
T ss_pred             ----------------CCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCC
Confidence                            456999999998653211     122335677999999998889999999999999999997 9


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||.....     .......+..  +.                                       ....+...++++.
T Consensus       279 ~~p~~~~~~-----~~~~~~~~~~--~~---------------------------------------~~~~~~~~~~~~~  312 (343)
T cd05103         279 ASPYPGVKI-----DEEFCRRLKE--GT---------------------------------------RMRAPDYTTPEMY  312 (343)
T ss_pred             CCCCCCccc-----cHHHHHHHhc--cC---------------------------------------CCCCCCCCCHHHH
Confidence            999964321     1111111000  00                                       0011122356789


Q ss_pred             HHHhhccCcCCCCCcCHHHHhcC
Q 045988          440 DFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       440 dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      +++.+||+.||.+|||+.|+++|
T Consensus       313 ~~~~~cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         313 QTMLDCWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             HHHHHHccCChhhCcCHHHHHHH
Confidence            99999999999999999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-38  Score=298.65  Aligned_cols=259  Identities=25%  Similarity=0.350  Sum_probs=212.6

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      -..+|.++++||+|+|++|.+++.+.|.+.||+|++++.-.    ...-+..|-.+..+..     +||.+|-++..|+ 
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~as-----n~pflvglhscfq-  321 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS-----NNPFLVGLHSCFQ-  321 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhcc-----CCCeEEehhhhhc-
Confidence            35789999999999999999999999999999999887532    2233445666665553     8999999999999 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         +...+++|.||+ ||+|.-.++  ..+.++++.++.+...|+.||.|||++ |||.||||.+|+|++.         
T Consensus       322 ---tesrlffvieyv~ggdlmfhmq--rqrklpeeharfys~ei~lal~flh~r-giiyrdlkldnvllda---------  386 (593)
T KOG0695|consen  322 ---TESRLFFVIEYVNGGDLMFHMQ--RQRKLPEEHARFYSAEICLALNFLHER-GIIYRDLKLDNVLLDA---------  386 (593)
T ss_pred             ---ccceEEEEEEEecCcceeeehh--hhhcCcHHHhhhhhHHHHHHHHHHhhc-CeeeeeccccceEEcc---------
Confidence               668999999999 889876665  445699999999999999999999998 9999999999999966         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       387 --------------------------------------------------------------------------------  386 (593)
T KOG0695|consen  387 --------------------------------------------------------------------------------  386 (593)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                                 .+.+||.|+|+++..   .....+++|||.|.|||++.+..|++.+|+|+|||
T Consensus       387 ---------------------------eghikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgv  439 (593)
T KOG0695|consen  387 ---------------------------EGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGV  439 (593)
T ss_pred             ---------------------------CCceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHH
Confidence                                       678999999998642   23356789999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCC-CChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          352 ICFELATGDVLFDPHSGDNYD-RDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~-~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      +++||+.|+.||+--..++.+ +.++.+-                                         ..++..++..
T Consensus       440 lmfemmagrspfdivgm~n~d~ntedylf-----------------------------------------qvilekqiri  478 (593)
T KOG0695|consen  440 LMFEMMAGRSPFDIVGMDNPDMNTEDYLF-----------------------------------------QVILEKQIRI  478 (593)
T ss_pred             HHHHHHcCCCCcceecCCCcccchhHHHH-----------------------------------------HHHhhhcccc
Confidence            999999999999744332221 1222222                                         2234445556


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcC------HHHHhcCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPT------AAQCLTHPWINV  467 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpt------a~elL~hp~f~~  467 (530)
                      +...+-.+..+|+..|+.||.+|..      ..++-.|+||..
T Consensus       479 prslsvkas~vlkgflnkdp~erlgc~~~~g~~dik~h~ffr~  521 (593)
T KOG0695|consen  479 PRSLSVKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRS  521 (593)
T ss_pred             cceeehhhHHHHHHhhcCCcHHhcCCCcccchhhhhcchhhhh
Confidence            6677777889999999999999974      689999999974

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.6e-37  Score=308.65  Aligned_cols=254  Identities=30%  Similarity=0.475  Sum_probs=205.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .+.|.+.+.||+|+||.||+|.+..++..||+|++.........+.+|+.+++.+      +|+||+++++.+..    .
T Consensus        18 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~----~   87 (286)
T cd06614          18 RELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDC------KHPNIVDYYDSYLV----G   87 (286)
T ss_pred             cccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHC------CCCCeeEEEEEEEE----C
Confidence            4679999999999999999999998899999999876554456788899999998      78889999999984    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...|+||||+ +++|.+++.... ..++...+..++.||+.||+|||++ ||+|+||||+||+++.              
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~-gi~H~dl~p~ni~i~~--------------  151 (286)
T cd06614          88 DELWVVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQ-NVIHRDIKSDNILLSK--------------  151 (286)
T ss_pred             CEEEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCChhhEEEcC--------------
Confidence            7899999999 799999997644 3589999999999999999999996 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (286)
T cd06614         152 --------------------------------------------------------------------------------  151 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            ++.++|+|||.+......   .....++..|+|||++.+..++.++|+|||||++|+|
T Consensus       152 ----------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l  209 (286)
T cd06614         152 ----------------------DGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEM  209 (286)
T ss_pred             ----------------------CCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHH
Confidence                                  456999999988643222   2334578899999999988899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||....      .......+.. .+ .+                                     ........+.
T Consensus       210 ~~g~~p~~~~~------~~~~~~~~~~-~~-~~-------------------------------------~~~~~~~~~~  244 (286)
T cd06614         210 AEGEPPYLREP------PLRALFLITT-KG-IP-------------------------------------PLKNPEKWSP  244 (286)
T ss_pred             HhCCCCCCCCC------HHHHHHHHHh-cC-CC-------------------------------------CCcchhhCCH
Confidence            99999995322      1111111100 00 00                                     0001122457


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      .+.+||.+||+.+|.+||++.++|.||||+.
T Consensus       245 ~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~  275 (286)
T cd06614         245 EFKDFLNKCLVKDPEKRPSAEELLQHPFLKK  275 (286)
T ss_pred             HHHHHHHHHhccChhhCcCHHHHhhChHhhc
Confidence            8999999999999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.5e-38  Score=303.31  Aligned_cols=239  Identities=31%  Similarity=0.445  Sum_probs=197.2

Q ss_pred             eccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           50 LGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        50 LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ||.|+||.||+|.+..+++.||+|++.....    ....+..|+.+++++      .|+||+++++.+.    .+...|+
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~~~~~~~   70 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRI------NHPFIVKLHYAFQ----TEEKLYL   70 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHc------CCCcHHHHHHHee----cCCeeEE
Confidence            7999999999999988899999998876532    344678899999998      6888999999988    5579999


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccc
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLT  204 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~  204 (530)
                      ||||+ +++|.+++...  ..+++..+..++.||+.||.|||+. +++|+||||+||+++.                   
T Consensus        71 v~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lh~~-~~~H~~l~p~ni~~~~-------------------  128 (250)
T cd05123          71 VLEYAPGGELFSHLSKE--GRFSEERARFYAAEIVLALEYLHSL-GIIYRDLKPENILLDA-------------------  128 (250)
T ss_pred             EEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEcC-------------------
Confidence            99999 99999998744  3489999999999999999999996 9999999999999954                   


Q ss_pred             ccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 045988          205 KKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK  284 (530)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (530)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (250)
T cd05123         129 --------------------------------------------------------------------------------  128 (250)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCC
Q 045988          285 DCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDV  361 (530)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~  361 (530)
                                       ...++|+|||.+.....   ......++..|+|||.+.+..++.++|+|||||++|+|++|..
T Consensus       129 -----------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~  191 (250)
T cd05123         129 -----------------DGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKP  191 (250)
T ss_pred             -----------------CCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCC
Confidence                             45689999999876433   2345568889999999988888999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHH
Q 045988          362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADF  441 (530)
Q Consensus       362 PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL  441 (530)
                      ||....      .......+                                          ......++...+..+.+|
T Consensus       192 p~~~~~------~~~~~~~~------------------------------------------~~~~~~~~~~~~~~l~~~  223 (250)
T cd05123         192 PFYAED------RKEIYEKI------------------------------------------LKDPLRFPEFLSPEARDL  223 (250)
T ss_pred             CCCCCC------HHHHHHHH------------------------------------------hcCCCCCCCCCCHHHHHH
Confidence            995322      11111111                                          011223344456889999


Q ss_pred             HhhccCcCCCCCcCH---HHHhcCCCC
Q 045988          442 LVPILDFVPEKRPTA---AQCLTHPWI  465 (530)
Q Consensus       442 l~~mL~~dP~~Rpta---~elL~hp~f  465 (530)
                      |.+||..||.+||++   .++++||||
T Consensus       224 i~~~l~~~p~~R~~~~~~~~l~~~~~f  250 (250)
T cd05123         224 ISGLLQKDPTKRLGSGGAEEIKAHPFF  250 (250)
T ss_pred             HHHHhcCCHhhCCCcccHHHHHhCCCC
Confidence            999999999999999   999999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1.6e-37  Score=307.41  Aligned_cols=248  Identities=21%  Similarity=0.273  Sum_probs=193.4

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCe----EEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSH----YVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~----~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      .++..+|++.++||+|+||+||+|.+..++.    .||+|+++...  .....+.+|+.+++.+      .|+||+++++
T Consensus         3 ~l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~   76 (279)
T cd05109           3 ILKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGV------GSPYVCRLLG   76 (279)
T ss_pred             ccchhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhc------CCCCCceEEE
Confidence            4567899999999999999999999877765    58999876532  2345677888888887      7888999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ++..     ...+++|||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||+..     
T Consensus        77 ~~~~-----~~~~l~~~~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~-~iiH~dlkp~Nil~~~-----  144 (279)
T cd05109          77 ICLT-----STVQLVTQLMPYGCLLDYVREN-KDRIGSQDLLNWCVQIAKGMSYLEEV-RLVHRDLAARNVLVKS-----  144 (279)
T ss_pred             EEcC-----CCcEEEEEcCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccccceEEEcC-----
Confidence            8863     3578999999 89999988643 23489999999999999999999997 9999999999999954     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (279)
T cd05109         145 --------------------------------------------------------------------------------  144 (279)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc-----CCCCCCCCccCChhhcCCCCCCcch
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-----TNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                     ...++|+|||++.......     ....+++.|+|||.+.+..++.++|
T Consensus       145 -------------------------------~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  193 (279)
T cd05109         145 -------------------------------PNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSD  193 (279)
T ss_pred             -------------------------------CCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhH
Confidence                                           3568999999997543221     1223467899999999888999999


Q ss_pred             hHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          346 LWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       346 iWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      ||||||++|||++ |..||....       ...+........                                      
T Consensus       194 i~slG~~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~--------------------------------------  228 (279)
T cd05109         194 VWSYGVTVWELMTFGAKPYDGIP-------AREIPDLLEKGE--------------------------------------  228 (279)
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHHCCC--------------------------------------
Confidence            9999999999998 899995322       111111111000                                      


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                        ....+...+.++.+||.+||..||++||++.+++.
T Consensus       229 --~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~  263 (279)
T cd05109         229 --RLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVD  263 (279)
T ss_pred             --cCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence              00112234678899999999999999999999995

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=1.9e-37  Score=309.30  Aligned_cols=255  Identities=21%  Similarity=0.299  Sum_probs=195.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCC----------------eEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTS----------------HYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPD  101 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~----------------~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~  101 (530)
                      ..++|++.++||+|+||.||+|.+..++                ..||+|++....  .....+.+|+++++++      
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l------   76 (296)
T cd05051           3 PRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRL------   76 (296)
T ss_pred             chhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhc------
Confidence            3468999999999999999999876543                568999887543  3356678899999999      


Q ss_pred             CCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhc---------cCCCCHHHHHHHHHHHHHHHHHHHhhCCc
Q 045988          102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD---------YRGVPLHMVKEICFHILVGLDHLHRELSI  171 (530)
Q Consensus       102 ~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~---------~~~l~~~~~~~i~~qll~aL~~LH~~~gI  171 (530)
                      .||||+++++++.    .+...++||||+ +++|.+++....         ...+++..+..++.||+.||+|||++ ||
T Consensus        77 ~~~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~-~i  151 (296)
T cd05051          77 SDPNIARLLGVCT----VDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL-NF  151 (296)
T ss_pred             CCCCEeEEEEEEe----cCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence            6788999999988    447899999999 889999886543         12488999999999999999999997 99


Q ss_pred             eeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCC
Q 045988          172 IHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDH  251 (530)
Q Consensus       172 vHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (530)
                      +||||||+|||++.                                                                  
T Consensus       152 ~H~dlkp~Nili~~------------------------------------------------------------------  165 (296)
T cd05051         152 VHRDLATRNCLVGK------------------------------------------------------------------  165 (296)
T ss_pred             cccccchhceeecC------------------------------------------------------------------
Confidence            99999999999955                                                                  


Q ss_pred             CCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCC
Q 045988          252 TSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQT  326 (530)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt  326 (530)
                                                                        ...++|+|||.+......     .....++
T Consensus       166 --------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  195 (296)
T cd05051         166 --------------------------------------------------NYTIKIADFGMSRNLYSSDYYRVQGRAPLP  195 (296)
T ss_pred             --------------------------------------------------CCceEEccccceeecccCcceeecCcCCCC
Confidence                                                              457999999998653221     2234567


Q ss_pred             CCccCChhhcCCCCCCcchhHHHHHHHHHHHh--CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccc
Q 045988          327 RQYRCPEVLLGSKYSTPADLWSFACICFELAT--GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN  404 (530)
Q Consensus       327 ~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt--G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  404 (530)
                      +.|+|||++.+..++.++|||||||++|+|++  |..||....      ....+..+...+.....              
T Consensus       196 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~--------------  255 (296)
T cd05051         196 IRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT------DQQVIENAGHFFRDDGR--------------  255 (296)
T ss_pred             ceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC------hHHHHHHHHhccccccc--------------
Confidence            78999999988889999999999999999998  677885322      12222221111000000              


Q ss_pred             ccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          405 RHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                          ......+...+.++.+||.+||+.||.+|||+.|+++
T Consensus       256 --------------------~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~  292 (296)
T cd05051         256 --------------------QIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHL  292 (296)
T ss_pred             --------------------cccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHH
Confidence                                0000112234578999999999999999999999965

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=1.6e-37  Score=307.82  Aligned_cols=249  Identities=23%  Similarity=0.333  Sum_probs=194.8

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      |+..+|.+.++||+|+||.||+|...     .++..+|+|.+.... .....+.+|+++++.+      .|+||++++++
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~   75 (280)
T cd05092           2 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVL------QHQHIVRFYGV   75 (280)
T ss_pred             CChHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcC------CCCCCceEEEE
Confidence            34678999999999999999999743     356789999876543 3345788899999998      78889999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhcc-------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADY-------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~-------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                      +.    .+...++||||+ +++|.+++.....             ..+++..+..++.||+.||+|||++ ||+||||||
T Consensus        76 ~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~-~i~H~dlkp  150 (280)
T cd05092          76 CT----EGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL-HFVHRDLAT  150 (280)
T ss_pred             Ee----cCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC-CeecccccH
Confidence            88    446799999999 8899999865431             2378899999999999999999997 999999999


Q ss_pred             CcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 045988          179 ENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEP  258 (530)
Q Consensus       179 ~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (530)
                      +|||++.                                                                         
T Consensus       151 ~nil~~~-------------------------------------------------------------------------  157 (280)
T cd05092         151 RNCLVGQ-------------------------------------------------------------------------  157 (280)
T ss_pred             hhEEEcC-------------------------------------------------------------------------
Confidence            9999954                                                                         


Q ss_pred             CCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCCh
Q 045988          259 NGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPE  333 (530)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE  333 (530)
                                                                 +..++|+|||++......     .....+++.|+|||
T Consensus       158 -------------------------------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  194 (280)
T cd05092         158 -------------------------------------------GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPE  194 (280)
T ss_pred             -------------------------------------------CCCEEECCCCceeEcCCCceeecCCCccccccccCHH
Confidence                                                       456999999998643211     12234567899999


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccc
Q 045988          334 VLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI  412 (530)
Q Consensus       334 ~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  412 (530)
                      ++.+..++.++|||||||++|+|++ |.+||....      ..+.+..+.  .+                          
T Consensus       195 ~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~--~~--------------------------  240 (280)
T cd05092         195 SILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLS------NTEAIECIT--QG--------------------------  240 (280)
T ss_pred             HhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCC------HHHHHHHHH--cC--------------------------
Confidence            9998889999999999999999998 999995322      111111110  00                          


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                   .....+...++.+.+||.+||+.||.+||++.++++
T Consensus       241 -------------~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~  276 (280)
T cd05092         241 -------------RELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHS  276 (280)
T ss_pred             -------------ccCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                         001122345678999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=2.2e-37  Score=308.46  Aligned_cols=248  Identities=23%  Similarity=0.348  Sum_probs=195.3

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      +.++|.+.+.||+|+||.||+|.+.     .++..+|+|.+..... ....+.+|+.+++++      .|+||+++++++
T Consensus         3 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~   76 (291)
T cd05094           3 KRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL------QHEHIVKFYGVC   76 (291)
T ss_pred             chHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcC------CCCCcceEEEEE
Confidence            4578999999999999999999753     3467899998775433 235678899999998      788899999998


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                      .    .....++||||+ +++|.+++.....              ..+++..+..++.||+.||+|||++ ||+||||||
T Consensus        77 ~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~-~i~H~dlkp  151 (291)
T cd05094          77 G----DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ-HFVHRDLAT  151 (291)
T ss_pred             c----cCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccCc
Confidence            8    456899999999 8999999865321              2378899999999999999999997 999999999


Q ss_pred             CcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 045988          179 ENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEP  258 (530)
Q Consensus       179 ~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (530)
                      +|||++.                                                                         
T Consensus       152 ~Nil~~~-------------------------------------------------------------------------  158 (291)
T cd05094         152 RNCLVGA-------------------------------------------------------------------------  158 (291)
T ss_pred             ceEEEcc-------------------------------------------------------------------------
Confidence            9999955                                                                         


Q ss_pred             CCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCCh
Q 045988          259 NGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPE  333 (530)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE  333 (530)
                                                                 +..++|+|||++......     .....++..|+|||
T Consensus       159 -------------------------------------------~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE  195 (291)
T cd05094         159 -------------------------------------------NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPE  195 (291)
T ss_pred             -------------------------------------------CCcEEECCCCcccccCCCceeecCCCCCcceeecChH
Confidence                                                       457999999998653221     23345678899999


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccc
Q 045988          334 VLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI  412 (530)
Q Consensus       334 ~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  412 (530)
                      ++.+..++.++|||||||++|+|++ |..||....      ....+..+.  .+..                        
T Consensus       196 ~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~~~~--~~~~------------------------  243 (291)
T cd05094         196 SIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS------NTEVIECIT--QGRV------------------------  243 (291)
T ss_pred             HhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHh--CCCC------------------------
Confidence            9998889999999999999999998 999985432      111111110  0000                        


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                     ...+...+..+.+||.+||+.||.+|||+.++++
T Consensus       244 ---------------~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~  277 (291)
T cd05094         244 ---------------LERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYK  277 (291)
T ss_pred             ---------------CCCCccCCHHHHHHHHHHcccChhhCcCHHHHHH
Confidence                           0011234578999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-37  Score=301.89  Aligned_cols=241  Identities=25%  Similarity=0.421  Sum_probs=195.7

Q ss_pred             EEeccccceEEEEEEeCCC---CeEEEEEEecccccc--hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           48 SKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQHY--TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~~~--~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      ++||+|+||.||+|.+...   +..||+|++......  ...+.+|++++..+      .|+||+++++++..    ...
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~----~~~   70 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKL------GHPNVVRLLGVCTE----EEP   70 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhc------CCCChheeeeeecC----CCc
Confidence            4799999999999998866   899999998865443  56788899999998      68889999999884    578


Q ss_pred             EEEEEecc-CcCHHHHHHhhc-------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          123 VCMVFEYL-GENLLTLIKYAD-------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~-------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                      +++||||+ +++|.+++....       ...+++..+..++.||+.||+|||++ ||+||||||+||+++.         
T Consensus        71 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~di~p~nili~~---------  140 (262)
T cd00192          71 LYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK-KFVHRDLAARNCLVGE---------  140 (262)
T ss_pred             eEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC-CcccCccCcceEEECC---------
Confidence            99999999 999999987542       24589999999999999999999997 9999999999999965         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (262)
T cd00192         141 --------------------------------------------------------------------------------  140 (262)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                 +..++|+|||.+......     .....++..|+|||.+....++.++|||||
T Consensus       141 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  193 (262)
T cd00192         141 ---------------------------DLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSF  193 (262)
T ss_pred             ---------------------------CCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHH
Confidence                                       456999999999754332     334467889999999988889999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          350 ACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       350 G~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      ||++|+|++ |..||....      .......+..  +                                       ...
T Consensus       194 G~il~~l~~~g~~p~~~~~------~~~~~~~~~~--~---------------------------------------~~~  226 (262)
T cd00192         194 GVLLWEIFTLGATPYPGLS------NEEVLEYLRK--G---------------------------------------YRL  226 (262)
T ss_pred             HHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--C---------------------------------------CCC
Confidence            999999999 699996432      1111111110  0                                       011


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..+...+.++.++|.+||+.||.+|||+.|+++|
T Consensus       227 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  260 (262)
T cd00192         227 PKPEYCPDELYELMLSCWQLDPEDRPTFSELVER  260 (262)
T ss_pred             CCCccCChHHHHHHHHHccCCcccCcCHHHHHHh
Confidence            2233457889999999999999999999999975

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-37  Score=310.64  Aligned_cols=255  Identities=21%  Similarity=0.305  Sum_probs=192.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCC--------------CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQT--------------SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~--------------~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h  103 (530)
                      ..++|++.++||+|+||.||+|++..+              ...||+|++....  .....+.+|+++++++      .|
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l------~h   76 (295)
T cd05097           3 PRQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRL------KN   76 (295)
T ss_pred             chHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhC------CC
Confidence            457899999999999999999987543              2469999887542  2345678899999999      78


Q ss_pred             cceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc----------CCCCHHHHHHHHHHHHHHHHHHHhhCCce
Q 045988          104 KCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY----------RGVPLHMVKEICFHILVGLDHLHRELSII  172 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~----------~~l~~~~~~~i~~qll~aL~~LH~~~gIv  172 (530)
                      +||+++++++.    .....++||||+ +++|.+++.....          ..+++..+..++.||+.||+|||++ ||+
T Consensus        77 ~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~-~i~  151 (295)
T cd05097          77 PNIIRLLGVCV----SDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL-NFV  151 (295)
T ss_pred             CCcCeEEEEEc----CCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc-Cee
Confidence            88999999997    457899999999 8899998864321          1367888999999999999999997 999


Q ss_pred             eccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCC
Q 045988          173 HTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHT  252 (530)
Q Consensus       173 HrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (530)
                      ||||||+|||++.                                                                   
T Consensus       152 H~dlkp~Nill~~-------------------------------------------------------------------  164 (295)
T cd05097         152 HRDLATRNCLVGN-------------------------------------------------------------------  164 (295)
T ss_pred             ccccChhhEEEcC-------------------------------------------------------------------
Confidence            9999999999954                                                                   


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCC
Q 045988          253 SVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTR  327 (530)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~  327 (530)
                                                                       +..++|+|||++......     .....++.
T Consensus       165 -------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~  195 (295)
T cd05097         165 -------------------------------------------------HYTIKIADFGMSRNLYSGDYYRIQGRAVLPI  195 (295)
T ss_pred             -------------------------------------------------CCcEEecccccccccccCcceeccCcCcCce
Confidence                                                             456999999998643211     12234567


Q ss_pred             CccCChhhcCCCCCCcchhHHHHHHHHHHHh--CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccc
Q 045988          328 QYRCPEVLLGSKYSTPADLWSFACICFELAT--GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR  405 (530)
Q Consensus       328 ~y~aPE~l~~~~~~~~~DiWSlG~il~ellt--G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  405 (530)
                      .|+|||++.+..++.++|||||||++|+|++  |..||...+      ....+..+.........               
T Consensus       196 ~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~---------------  254 (295)
T cd05097         196 RWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLS------DEQVIENTGEFFRNQGR---------------  254 (295)
T ss_pred             eecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccC------hHHHHHHHHHhhhhccc---------------
Confidence            8999999998889999999999999999988  667885432      11112111111000000               


Q ss_pred             cCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          406 HGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                         ......+...++.+.+||.+||..||.+||+++++++
T Consensus       255 -------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~  291 (295)
T cd05097         255 -------------------QIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHH  291 (295)
T ss_pred             -------------------cccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                               0000112234678999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-39  Score=321.52  Aligned_cols=254  Identities=26%  Similarity=0.339  Sum_probs=214.5

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +..+++++..||-|+||.|=++........+|+|++++..    ...+.+..|-+||..+      ..|+||++|..|. 
T Consensus       418 ~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~------~s~fIvrLYrTfr-  490 (732)
T KOG0614|consen  418 KLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMEC------RSDFIVRLYRTFR-  490 (732)
T ss_pred             chhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhc------CchHHHHHHHHhc-
Confidence            3567888999999999999999877766679999988753    3456788899999998      6788999999999 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         +..++|++||.| ||.|...+..  .+.+.+.++++++..++.|++|||++ |||.|||||+|.||+.         
T Consensus       491 ---d~kyvYmLmEaClGGElWTiLrd--Rg~Fdd~tarF~~acv~EAfeYLH~k-~iIYRDLKPENllLd~---------  555 (732)
T KOG0614|consen  491 ---DSKYVYMLMEACLGGELWTILRD--RGSFDDYTARFYVACVLEAFEYLHRK-GIIYRDLKPENLLLDN---------  555 (732)
T ss_pred             ---cchhhhhhHHhhcCchhhhhhhh--cCCcccchhhhhHHHHHHHHHHHHhc-CceeccCChhheeecc---------
Confidence               558999999999 9999999974  44599999999999999999999997 9999999999999966         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       556 --------------------------------------------------------------------------------  555 (732)
T KOG0614|consen  556 --------------------------------------------------------------------------------  555 (732)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                                 ++-+||.|||+|+...  ....+++|||.|.|||+++++.++.++|.||||++
T Consensus       556 ---------------------------~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIl  608 (732)
T KOG0614|consen  556 ---------------------------RGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGIL  608 (732)
T ss_pred             ---------------------------CCceEEeehhhHHHhccCCceeeecCCcccccchhhhccCcchhhHHHHHHHH
Confidence                                       5679999999998754  34567899999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +||||+|.+||.+..+.      .....|..                                        ....+.+|.
T Consensus       609 i~ELL~G~pPFs~~dpm------ktYn~ILk----------------------------------------Gid~i~~Pr  642 (732)
T KOG0614|consen  609 IYELLTGSPPFSGVDPM------KTYNLILK----------------------------------------GIDKIEFPR  642 (732)
T ss_pred             HHHHHcCCCCCCCCchH------HHHHHHHh----------------------------------------hhhhhhccc
Confidence            99999999999754321      11111110                                        123446777


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      .+...+.+||+++...+|.+|..     +.+|-+|.||..-
T Consensus       643 ~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~Wf~gf  683 (732)
T KOG0614|consen  643 RITKTATDLIKKLCRDNPTERLGYQKGGINDIKKHRWFEGF  683 (732)
T ss_pred             ccchhHHHHHHHHHhcCcHhhhccccCChHHHHhhhhhhcC
Confidence            78889999999999999999987     8999999999753

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=5.9e-38  Score=311.07  Aligned_cols=248  Identities=20%  Similarity=0.312  Sum_probs=193.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCC-----CeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQT-----SHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~-----~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ..+|.+.++||+|+||.||+|.+..+     ++.||||+++....  ..+.+.+|+.++..+      .||||+++++++
T Consensus         4 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l------~h~~iv~~~~~~   77 (283)
T cd05091           4 LSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRL------QHPNIVCLLGVV   77 (283)
T ss_pred             HHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcC------CCCCcCeEEEEE
Confidence            45688999999999999999987543     58899999875432  235677889888888      788999999998


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYAD--------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~--------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                      ..    ....++++||+ +++|.+++....              ...++...+..++.||+.||+|||++ ||+||||||
T Consensus        78 ~~----~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~-gi~H~dlkp  152 (283)
T cd05091          78 TK----EQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH-HVVHKDLAT  152 (283)
T ss_pred             cC----CCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc-Cccccccch
Confidence            84    46799999999 889998885321              12378888999999999999999997 999999999


Q ss_pred             CcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 045988          179 ENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEP  258 (530)
Q Consensus       179 ~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (530)
                      +|||+..                                                                         
T Consensus       153 ~Nil~~~-------------------------------------------------------------------------  159 (283)
T cd05091         153 RNVLVFD-------------------------------------------------------------------------  159 (283)
T ss_pred             hheEecC-------------------------------------------------------------------------
Confidence            9999954                                                                         


Q ss_pred             CCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCCh
Q 045988          259 NGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPE  333 (530)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE  333 (530)
                                                                 +..+||+|||++......     .....+++.|+|||
T Consensus       160 -------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  196 (283)
T cd05091         160 -------------------------------------------KLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPE  196 (283)
T ss_pred             -------------------------------------------CCceEecccccccccccchheeeccCccCCccccCHH
Confidence                                                       456899999998643211     23345678999999


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccc
Q 045988          334 VLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI  412 (530)
Q Consensus       334 ~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  412 (530)
                      ++.+..++.++|||||||++|+|++ |..||.+..      ..+....+...    +                       
T Consensus       197 ~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~------~~~~~~~i~~~----~-----------------------  243 (283)
T cd05091         197 AIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS------NQDVIEMIRNR----Q-----------------------  243 (283)
T ss_pred             HHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHcC----C-----------------------
Confidence            9988889999999999999999998 888886432      11122111100    0                       


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                    ....+...+..+.+|+.+||+.||.+||+++++++.
T Consensus       244 --------------~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~  279 (283)
T cd05091         244 --------------VLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSR  279 (283)
T ss_pred             --------------cCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHH
Confidence                          001233456789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=3.5e-37  Score=310.52  Aligned_cols=249  Identities=24%  Similarity=0.364  Sum_probs=193.2

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCC-------CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQ-------TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~-------~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      ..++|.+.++||+|+||.||+|.+..       ....||+|+++...  .....+.+|+++++++.     .||||++++
T Consensus        10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~   84 (314)
T cd05099          10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIG-----KHKNIINLL   84 (314)
T ss_pred             cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhcc-----CCCCeeeEE
Confidence            45789999999999999999997632       35689999887543  22456778999998883     589999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceecc
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD--------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTD  175 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~--------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrD  175 (530)
                      +++..    ...+|+||||+ +++|.+++....              ...++...+..++.||+.||.|||++ ||+|||
T Consensus        85 ~~~~~----~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~-gi~H~d  159 (314)
T cd05099          85 GVCTQ----EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR-RCIHRD  159 (314)
T ss_pred             EEEcc----CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC-Ceeecc
Confidence            99873    46799999999 889999986532              12478889999999999999999997 999999


Q ss_pred             CCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCC
Q 045988          176 LKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVD  255 (530)
Q Consensus       176 IKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (530)
                      |||+|||++.                                                                      
T Consensus       160 lkp~Nill~~----------------------------------------------------------------------  169 (314)
T cd05099         160 LAARNVLVTE----------------------------------------------------------------------  169 (314)
T ss_pred             ccceeEEEcC----------------------------------------------------------------------
Confidence            9999999954                                                                      


Q ss_pred             CCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCcc
Q 045988          256 AEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYR  330 (530)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~  330 (530)
                                                                    +..++|+|||.+......     .....++..|+
T Consensus       170 ----------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~  203 (314)
T cd05099         170 ----------------------------------------------DNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWM  203 (314)
T ss_pred             ----------------------------------------------CCcEEEccccccccccccccccccccCCCCcccc
Confidence                                                          456999999999654321     11122446799


Q ss_pred             CChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcc
Q 045988          331 CPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL  409 (530)
Q Consensus       331 aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  409 (530)
                      |||++.+..++.++|||||||++|+|++ |..||....      .......+..  +                       
T Consensus       204 aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~-----------------------  252 (314)
T cd05099         204 APEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIP------VEELFKLLRE--G-----------------------  252 (314)
T ss_pred             CHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C-----------------------
Confidence            9999998889999999999999999999 889995432      1111111100  0                       


Q ss_pred             ccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          410 RHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                      .....+...+.++.+||.+||..||.+|||+.++++
T Consensus       253 ----------------~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~  288 (314)
T cd05099         253 ----------------HRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVE  288 (314)
T ss_pred             ----------------CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                            001123345678999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-40  Score=300.74  Aligned_cols=285  Identities=28%  Similarity=0.489  Sum_probs=215.2

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC-
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN-  119 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~-  119 (530)
                      .+.-+.||.|+||.||.+++..+|+.||+|.+....   .....+.+|+++|.-.      .|.|++..+++.+-...+ 
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfF------kHdNVLSaLDILQPph~df  128 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSF------RHDNVLSLLDILQPANPSF  128 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhh------ccccHHHHHHhcCCCCchH
Confidence            445688999999999999999999999999765432   3356788999999888      566688888877643111 


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      -..+|+|.|+|..+|...|-.  ...++...++-+++||+.||+|||+. ||.||||||.|.|+.+              
T Consensus       129 FqEiYV~TELmQSDLHKIIVS--PQ~Ls~DHvKVFlYQILRGLKYLHsA-~ILHRDIKPGNLLVNS--------------  191 (449)
T KOG0664|consen  129 FQELYVLTELMQSDLHKIIVS--PQALTPDHVKVFVYQILRGLKYLHTA-NILHRDIKPGNLLVNS--------------  191 (449)
T ss_pred             HHHHHHHHHHHHhhhhheecc--CCCCCcchhhhhHHHHHhhhHHHhhc-chhhccCCCccEEecc--------------
Confidence            135789999999999998863  34489999999999999999999996 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (449)
T KOG0664|consen  192 --------------------------------------------------------------------------------  191 (449)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICF  354 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~  354 (530)
                                            +-.+||||||+|+....    ..+..+-|.+|+|||++.|.. |+.++||||+|||+.
T Consensus       192 ----------------------NCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFa  249 (449)
T KOG0664|consen  192 ----------------------NCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFA  249 (449)
T ss_pred             ----------------------CceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHH
Confidence                                  34689999999976432    245556799999999999865 999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC--h
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS--E  432 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  432 (530)
                      ||+..+..|...+      ...++..|..++|++..+-..-..   +     |.-.++.+-.  ...+...-.+.+.  .
T Consensus       250 ELLgRrILFQAq~------PiqQL~lItdLLGTPs~EaMr~AC---E-----GAk~H~LR~~--~k~Ps~~vLYtlsS~~  313 (449)
T KOG0664|consen  250 ELLQRKILFQAAG------PIEQLQMIIDLLGTPSQEAMKYAC---E-----GAKNHVLRAG--LRAPDTQRLYKIASPD  313 (449)
T ss_pred             HHHhhhhhhhccC------hHHHHHHHHHHhCCCcHHHHHHHh---h-----hhHHHhhccC--CCCCCccceeeecCCc
Confidence            9999999997655      678999999999998755331100   0     0000000000  0000001111111  1


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ....+..+++.+||.+||.+|++.++++.|+|+.++.
T Consensus       314 ~~~heav~~~~~~l~~d~dkris~~~A~~~~~~~e~R  350 (449)
T KOG0664|consen  314 DKNHEAVDLLQKLLHFDPDKRISVEEALQHRYLEEGR  350 (449)
T ss_pred             ccchHHHHHHHHHhCCCCcccccHhhhcccccccccc
Confidence            3345677999999999999999999999999987654

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=5.4e-37  Score=300.44  Aligned_cols=246  Identities=23%  Similarity=0.392  Sum_probs=194.9

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|++.++||+|+||.||+|.+. .+..+|+|.+.........+.+|+.+++++      .|+||+++++.+..    
T Consensus         4 ~~~~~~~~~~lg~g~~~~vy~~~~~-~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~----   72 (260)
T cd05073           4 PRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTL------QHDKLVKLHAVVTK----   72 (260)
T ss_pred             cccceeEEeEecCccceEEEEEEec-CCccEEEEecCCChhHHHHHHHHHHHHHhc------CCCCcceEEEEEcC----
Confidence            4689999999999999999999754 456799998876655567788999999998      78889999998873    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                       ...++||||+ +++|.+++.......++...+..++.||+.||.|||++ |++||||||+||+++.             
T Consensus        73 -~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~-~i~H~dl~p~ni~i~~-------------  137 (260)
T cd05073          73 -EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR-NYIHRDLRAANILVSA-------------  137 (260)
T ss_pred             -CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC-CccccccCcceEEEcC-------------
Confidence             4689999999 78999999765545578889999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (260)
T cd05073         138 --------------------------------------------------------------------------------  137 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                             ...++|+|||.+......    .....++..|+|||++.+..++.++|+|||||++|
T Consensus       138 -----------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~  194 (260)
T cd05073         138 -----------------------SLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLM  194 (260)
T ss_pred             -----------------------CCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHH
Confidence                                   456999999998653221    12223466799999999888999999999999999


Q ss_pred             HHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      ++++ |.+||...+      .......+.   +..                                      ....+..
T Consensus       195 ~l~t~g~~p~~~~~------~~~~~~~~~---~~~--------------------------------------~~~~~~~  227 (260)
T cd05073         195 EIVTYGRIPYPGMS------NPEVIRALE---RGY--------------------------------------RMPRPEN  227 (260)
T ss_pred             HHHhcCCCCCCCCC------HHHHHHHHh---CCC--------------------------------------CCCCccc
Confidence            9998 999996432      111111110   000                                      0011234


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+.++.+|+.+||+.||++||++.++++
T Consensus       228 ~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05073         228 CPEELYNIMMRCWKNRPEERPTFEYIQS  255 (260)
T ss_pred             CCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence            4678999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=2.2e-37  Score=304.91  Aligned_cols=249  Identities=21%  Similarity=0.319  Sum_probs=189.4

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCe--EEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSH--YVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~--~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      |.+.++||+|+||.||+|.+..++.  .||+|.++..   ....+.+.+|+.+++.+      +|+||+++++.+.....
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~~   74 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEF------DHPNVMRLIGVCLQTVE   74 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhC------CCCCcceEEEEEccCCc
Confidence            3577899999999999999877764  6999987654   23345678899999998      78889999987643211


Q ss_pred             --CCcEEEEEEecc-CcCHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          119 --NGQHVCMVFEYL-GENLLTLIKYAD----YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       119 --~~~~~~lVmE~~-~~~L~~~i~~~~----~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                        .....++||||+ +++|.+++....    ...+++..+..++.||+.||+|||++ ||+||||||+|||++.      
T Consensus        75 ~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~~------  147 (272)
T cd05075          75 SEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK-SFIHRDLAARNCMLNE------  147 (272)
T ss_pred             ccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC-CeeccccchhheEEcC------
Confidence              124679999999 889988874322    23378999999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (272)
T cd05075         148 --------------------------------------------------------------------------------  147 (272)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                    +..++|+|||++......     .....+++.|+|||.+.+..++.++||
T Consensus       148 ------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di  197 (272)
T cd05075         148 ------------------------------NMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDV  197 (272)
T ss_pred             ------------------------------CCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHH
Confidence                                          456899999998754321     112235678999999998889999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          347 WSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       347 WSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      |||||++|+|++ |.+||.+..      .......+..  +                                       
T Consensus       198 ~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~---------------------------------------  230 (272)
T cd05075         198 WSFGVTMWEIATRGQTPYPGVE------NSEIYDYLRQ--G---------------------------------------  230 (272)
T ss_pred             HHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--C---------------------------------------
Confidence            999999999999 889996432      1111111100  0                                       


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      .....+...+..+.+||.+||+.||.+|||+.+++++
T Consensus       231 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  267 (272)
T cd05075         231 NRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCE  267 (272)
T ss_pred             CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            0001223445778999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1.6e-37  Score=309.89  Aligned_cols=251  Identities=24%  Similarity=0.407  Sum_probs=198.5

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      |....+||+|+||.||++....+++.||||.+.... .....+.+|+.+++.+      .|+||+++++.|.    .+.+
T Consensus        22 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~----~~~~   91 (292)
T cd06657          22 LDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY------QHENVVEMYNSYL----VGDE   91 (292)
T ss_pred             hhhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhc------CCcchhheeeEEE----eCCE
Confidence            344568999999999999999999999999875432 2345678899999988      7888999999998    4579


Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      .++||||+ +++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+||+++.                
T Consensus        92 ~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~-givH~dl~p~Nilv~~----------------  151 (292)
T cd06657          92 LWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHAQ-GVIHRDIKSDSILLTH----------------  151 (292)
T ss_pred             EEEEEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEECC----------------
Confidence            99999999 7788887642   3489999999999999999999997 9999999999999954                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (292)
T cd06657         152 --------------------------------------------------------------------------------  151 (292)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT  358 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt  358 (530)
                                          +..++|+|||.+......   .....|++.|+|||.+.+..++.++|+||+||++|+|++
T Consensus       152 --------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~t  211 (292)
T cd06657         152 --------------------DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVD  211 (292)
T ss_pred             --------------------CCCEEEcccccceecccccccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHh
Confidence                                456899999988643222   233568899999999988889999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |.+||.+..      ....+..+..   ..+.                                    ........+..+
T Consensus       212 g~~p~~~~~------~~~~~~~~~~---~~~~------------------------------------~~~~~~~~~~~l  246 (292)
T cd06657         212 GEPPYFNEP------PLKAMKMIRD---NLPP------------------------------------KLKNLHKVSPSL  246 (292)
T ss_pred             CCCCCCCCC------HHHHHHHHHh---hCCc------------------------------------ccCCcccCCHHH
Confidence            999996432      1111111110   0000                                    001112345678


Q ss_pred             HHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          439 ADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .+||.+||..||.+||++.++|.||||....
T Consensus       247 ~~li~~~l~~~P~~R~~~~~ll~~~~~~~~~  277 (292)
T cd06657         247 KGFLDRLLVRDPAQRATAAELLKHPFLAKAG  277 (292)
T ss_pred             HHHHHHHHhCCcccCcCHHHHhcChHHhccC
Confidence            8999999999999999999999999998765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.5e-37  Score=304.42  Aligned_cols=249  Identities=22%  Similarity=0.313  Sum_probs=191.4

Q ss_pred             EEEEEEeccccceEEEEEEeCCC---CeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      |++.+.||+|+||.||+|....+   +..||||+++....   ....+.+|+.+++.+      +|+||+++++++....
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~~   74 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDF------DHPNVMKLIGVCFEAS   74 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhC------CCCCeeeEEeeeccCC
Confidence            67889999999999999987653   48899998875422   235678899999998      7888999999876432


Q ss_pred             C--CCcEEEEEEecc-CcCHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          118 P--NGQHVCMVFEYL-GENLLTLIKYAD----YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       118 ~--~~~~~~lVmE~~-~~~L~~~i~~~~----~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      .  .....++||||+ +++|..++....    ...+++..+..++.||+.||+|||++ ||+||||||+||+++.     
T Consensus        75 ~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~-~i~H~dlkp~Nil~~~-----  148 (273)
T cd05035          75 SLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR-NFIHRDLAARNCMLRE-----  148 (273)
T ss_pred             ccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC-CeeccccchheEEECC-----
Confidence            1  123589999999 889998885432    12489999999999999999999997 9999999999999954     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (273)
T cd05035         149 --------------------------------------------------------------------------------  148 (273)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc-----CCCCCCCCccCChhhcCCCCCCcch
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-----TNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                     +..++|+|||++.......     ....++..|+|||++.+..++.++|
T Consensus       149 -------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~D  197 (273)
T cd05035         149 -------------------------------DMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSD  197 (273)
T ss_pred             -------------------------------CCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccc
Confidence                                           4568999999986543221     1123466899999998888999999


Q ss_pred             hHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          346 LWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       346 iWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      ||||||++|||++ |.+||....      ......   .+....                                    
T Consensus       198 v~SlG~il~el~~~g~~p~~~~~------~~~~~~---~~~~~~------------------------------------  232 (273)
T cd05035         198 VWAFGVTMWEIATRGQTPYPGVE------NHEIYD---YLRHGN------------------------------------  232 (273)
T ss_pred             hHHHHHHHHHHHhCCCCCCCCCC------HHHHHH---HHHcCC------------------------------------
Confidence            9999999999999 889995432      111111   111000                                    


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                        ....+...+..+.+||.+||..||.+|||+.|++++
T Consensus       233 --~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~  268 (273)
T cd05035         233 --RLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREV  268 (273)
T ss_pred             --CCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence              011223456789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=4.5e-37  Score=306.86  Aligned_cols=258  Identities=17%  Similarity=0.221  Sum_probs=185.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCC---CeEEEEEEecccccch--HH-------HHHHHHHHHHhhcCCCCCCcceeE
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQHYT--EA-------ALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~~~~--~~-------~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      .++|++.++||+|+||+||+|.+..+   +..+|+|+........  +.       ...++..+..+.   ...|++|++
T Consensus        11 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~---~~~h~~i~~   87 (294)
T PHA02882         11 GKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIH---NIDHLGIPK   87 (294)
T ss_pred             CCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhc---cCCCCCCCc
Confidence            67999999999999999999998887   7788888754332111  10       011222222222   237899999


Q ss_pred             ecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccC
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID  188 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~  188 (530)
                      +++..........+.+++|+++..++.+++...  ...++..+..++.||+.||+|||++ +|+||||||+|||++.   
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~iiHrDiKp~Nill~~---  161 (294)
T PHA02882         88 YYGCGSFKRCRMYYRFILLEKLVENTKEIFKRI--KCKNKKLIKNIMKDMLTTLEYIHEH-GISHGDIKPENIMVDG---  161 (294)
T ss_pred             EEEeeeEecCCceEEEEEEehhccCHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC---
Confidence            998765443233467899999988888777643  2367888999999999999999997 9999999999999954   


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (294)
T PHA02882        162 --------------------------------------------------------------------------------  161 (294)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc----------cccCCCCCCCCccCChhhcCC
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY----------KQFTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~----------~~~~~~~gt~~y~aPE~l~~~  338 (530)
                                                       +..++|+|||+|....          .......||+.|+|||++.+.
T Consensus       162 ---------------------------------~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~  208 (294)
T PHA02882        162 ---------------------------------NNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGA  208 (294)
T ss_pred             ---------------------------------CCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCC
Confidence                                             4568999999986532          112234699999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHH-HHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALM-MELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i-~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                      .++.++|||||||++|+|++|.+||...+...     ...... .....                               
T Consensus       209 ~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~-----~~~~~~~~~~~~-------------------------------  252 (294)
T PHA02882        209 CVTRRGDLESLGYCMLKWAGIKLPWKGFGHNG-----NLIHAAKCDFIK-------------------------------  252 (294)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCccccch-----HHHHHhHHHHHH-------------------------------
Confidence            99999999999999999999999997543111     111000 00000                               


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                          .+...... ....++.+.+++..|+..+|.+||+..++++
T Consensus       253 ----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~  291 (294)
T PHA02882        253 ----RLHEGKIK-IKNANKFIYDFIECVTKLSYEEKPDYDALIK  291 (294)
T ss_pred             ----Hhhhhhhc-cCCCCHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence                00000001 1233578999999999999999999999875

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=5.3e-37  Score=309.67  Aligned_cols=253  Identities=24%  Similarity=0.357  Sum_probs=199.7

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ..|...+.||+|+||.||+|.+..++..||||++....    .....+.+|+++++++      +|+|++++++++.   
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~---   95 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRI------KHPNSIEYKGCYL---   95 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhC------CCCCEEEEEEEEe---
Confidence            45889999999999999999999999999999876432    2234577899999988      7888999999988   


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       .....++||||+.++|.+++... ...+++..+..++.||+.||.|||++ ||+||||+|+||+++.            
T Consensus        96 -~~~~~~lv~e~~~g~l~~~~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~~-~i~H~dL~p~Nil~~~------------  160 (317)
T cd06635          96 -REHTAWLVMEYCLGSASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHSH-NMIHRDIKAGNILLTE------------  160 (317)
T ss_pred             -eCCeEEEEEeCCCCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcccEEECC------------
Confidence             44689999999987888877643 34489999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (317)
T cd06635         161 --------------------------------------------------------------------------------  160 (317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhc---CCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLL---GSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~---~~~~~~~~DiWSlG~il~  354 (530)
                                              +..++|+|||++..... .....|++.|+|||++.   ...++.++|||||||++|
T Consensus       161 ------------------------~~~~kl~dfg~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~  215 (317)
T cd06635         161 ------------------------PGQVKLADFGSASIASP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI  215 (317)
T ss_pred             ------------------------CCCEEEecCCCccccCC-cccccCCccccChhhhhcCCCCCCCccccHHHHHHHHH
Confidence                                    45699999998864332 33457889999999984   345889999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||....      .......+...  ..+                                      .......
T Consensus       216 el~~g~~p~~~~~------~~~~~~~~~~~--~~~--------------------------------------~~~~~~~  249 (317)
T cd06635         216 ELAERKPPLFNMN------AMSALYHIAQN--ESP--------------------------------------TLQSNEW  249 (317)
T ss_pred             HHHhCCCCCCCcc------HHHHHHHHHhc--cCC--------------------------------------CCCCccc
Confidence            9999999985321      11111111100  000                                      0011234


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +..+.+||.+||+.+|.+||++.++++|+|+....
T Consensus       250 ~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~  284 (317)
T cd06635         250 SDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRER  284 (317)
T ss_pred             cHHHHHHHHHHccCCcccCcCHHHHHhChhhhccC
Confidence            56789999999999999999999999999997543

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=4.1e-37  Score=302.24  Aligned_cols=247  Identities=20%  Similarity=0.314  Sum_probs=194.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCC---CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .++|++.+.||+|+||+||+|....+   ...||||+++...  .....+.+|+.+++++      +||||+++++.+. 
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~-   75 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQF------DHPNIIRLEGVVT-   75 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhC------CCCCcceEeEEEe-
Confidence            46799999999999999999988654   4689999887543  2245677899999998      7888999999987 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .+...++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.         
T Consensus        76 ---~~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~~-~i~H~di~p~nili~~---------  141 (266)
T cd05033          76 ---KSRPVMIITEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLSEM-NYVHRDLAARNILVNS---------  141 (266)
T ss_pred             ---cCCceEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCcceEEEcC---------
Confidence               456799999999 889999986533 3589999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (266)
T cd05033         142 --------------------------------------------------------------------------------  141 (266)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---c--CCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---F--TNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~--~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                 +..++|+|||.+......   .  ....++..|+|||.+.+..++.++|||||
T Consensus       142 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~sl  194 (266)
T cd05033         142 ---------------------------NLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSF  194 (266)
T ss_pred             ---------------------------CCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHH
Confidence                                       456899999999764311   1  12234568999999998889999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          350 ACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       350 G~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      ||++|+|++ |..||....      .......+...                                         ...
T Consensus       195 G~~l~~l~~~g~~p~~~~~------~~~~~~~~~~~-----------------------------------------~~~  227 (266)
T cd05033         195 GIVMWEVMSYGERPYWDMS------NQDVIKAVEDG-----------------------------------------YRL  227 (266)
T ss_pred             HHHHHHHHccCCCCCCCCC------HHHHHHHHHcC-----------------------------------------CCC
Confidence            999999998 999995322      11111111000                                         000


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..+...+..+.+|+.+||+.||++||++.|++++
T Consensus       228 ~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~  261 (266)
T cd05033         228 PPPMDCPSALYQLMLDCWQKDRNERPTFSQIVST  261 (266)
T ss_pred             CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            1123446789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=4.1e-37  Score=307.32  Aligned_cols=254  Identities=20%  Similarity=0.321  Sum_probs=191.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCC----------------CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQ----------------TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~----------------~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      .++|++.++||+|+||.||+|.+..                ++..||+|++....  .....+.+|+.+++.+      .
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l------~   77 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRL------K   77 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhC------C
Confidence            4689999999999999999986432                35679999987542  2345678999999999      6


Q ss_pred             CcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc---------CCCCHHHHHHHHHHHHHHHHHHHhhCCce
Q 045988          103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY---------RGVPLHMVKEICFHILVGLDHLHRELSII  172 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~---------~~l~~~~~~~i~~qll~aL~~LH~~~gIv  172 (530)
                      |+||+++++++..    ....++||||+ +++|.+++.....         ..+++..+..++.||+.||+|||++ ||+
T Consensus        78 ~~~i~~~~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~  152 (296)
T cd05095          78 DPNIIRLLAVCIT----SDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL-NFV  152 (296)
T ss_pred             CCCcceEEEEEec----CCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            8889999999884    46799999999 8899998865321         2367788999999999999999997 999


Q ss_pred             eccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCC
Q 045988          173 HTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHT  252 (530)
Q Consensus       173 HrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (530)
                      ||||||+|||++.                                                                   
T Consensus       153 H~dlkp~Nili~~-------------------------------------------------------------------  165 (296)
T cd05095         153 HRDLATRNCLVGK-------------------------------------------------------------------  165 (296)
T ss_pred             cccCChheEEEcC-------------------------------------------------------------------
Confidence            9999999999954                                                                   


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCC
Q 045988          253 SVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTR  327 (530)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~  327 (530)
                                                                       +..++|+|||++......     .....++.
T Consensus       166 -------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~  196 (296)
T cd05095         166 -------------------------------------------------NYTIKIADFGMSRNLYSGDYYRIQGRAVLPI  196 (296)
T ss_pred             -------------------------------------------------CCCEEeccCcccccccCCcceeccCcCcCcc
Confidence                                                             456899999998653221     12223467


Q ss_pred             CccCChhhcCCCCCCcchhHHHHHHHHHHHh--CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccc
Q 045988          328 QYRCPEVLLGSKYSTPADLWSFACICFELAT--GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR  405 (530)
Q Consensus       328 ~y~aPE~l~~~~~~~~~DiWSlG~il~ellt--G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  405 (530)
                      .|+|||+..+..++.++|||||||++|+|++  |..||...+.      ..........+                  ..
T Consensus       197 ~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~------~~~~~~~~~~~------------------~~  252 (296)
T cd05095         197 RWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSD------EQVIENTGEFF------------------RD  252 (296)
T ss_pred             ccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccCh------HHHHHHHHHHH------------------hh
Confidence            8999999888889999999999999999998  7788854331      11111110000                  00


Q ss_pred             cCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          406 HGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ...                ......+...++.+.+|+.+||+.||.+||++.++++
T Consensus       253 ~~~----------------~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~  292 (296)
T cd05095         253 QGR----------------QVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHA  292 (296)
T ss_pred             ccc----------------cccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            000                0000112234578999999999999999999999875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=2.8e-37  Score=310.38  Aligned_cols=253  Identities=23%  Similarity=0.344  Sum_probs=199.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ...|...+.||+|+||.||+|++..++..||||.+...    ......+.+|+++++.+      +|+|++++++++.. 
T Consensus        14 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~-   86 (308)
T cd06634          14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL------RHPNTIQYRGCYLR-   86 (308)
T ss_pred             HHHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhC------CCCCcccEEEEEEc-
Confidence            34688899999999999999999999999999987642    12234567899999998      78889999999884 


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                         ....++||||+.++|.+++.... ..+++..+..++.||+.||.|||++ |++||||||+|||++.           
T Consensus        87 ---~~~~~lv~e~~~~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~l~~LH~~-~i~H~dl~p~nil~~~-----------  150 (308)
T cd06634          87 ---EHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILLSE-----------  150 (308)
T ss_pred             ---CCeeEEEEEccCCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHhEEECC-----------
Confidence               47899999999888888775433 4489999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (308)
T cd06634         151 --------------------------------------------------------------------------------  150 (308)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC---CCCCCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG---SKYSTPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~---~~~~~~~DiWSlG~il  353 (530)
                                               ++.++|+|||++..... .....+++.|+|||++.+   ..++.++|||||||++
T Consensus       151 -------------------------~~~~kl~dfg~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il  204 (308)
T cd06634         151 -------------------------PGLVKLGDFGSASIMAP-ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITC  204 (308)
T ss_pred             -------------------------CCcEEECCcccceeecC-cccccCCccccCHHHHhhcccCCCCcccchHHHHHHH
Confidence                                     45699999999865432 234578899999999853   4578899999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|..||....      ....+..+..  +..|                                      ......
T Consensus       205 ~el~~g~~p~~~~~------~~~~~~~~~~--~~~~--------------------------------------~~~~~~  238 (308)
T cd06634         205 IELAERKPPLFNMN------AMSALYHIAQ--NESP--------------------------------------ALQSGH  238 (308)
T ss_pred             HHHHcCCCCCcccc------HHHHHHHHhh--cCCC--------------------------------------CcCccc
Confidence            99999999985321      1111111100  0000                                      001123


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .+..+.+||.+||..+|.+||++.++++||||...
T Consensus       239 ~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~~  273 (308)
T cd06634         239 WSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRE  273 (308)
T ss_pred             ccHHHHHHHHHHhhCCcccCCCHHHHhhCcccccc
Confidence            45778999999999999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=9.8e-37  Score=297.12  Aligned_cols=249  Identities=28%  Similarity=0.481  Sum_probs=200.9

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +|++.++||+|+||.||++.+..+++.||+|.+....   .....+.+|+.+++.+      .|+||+++++++.    .
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~   70 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASV------NHPNIISYKEAFL----D   70 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhC------CCCCchhhhhhhc----c
Confidence            5899999999999999999999999999999877542   3345667899999988      6888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      ....|+||||+ +++|.+++....  ...+++..+..++.||+.||+|||++ |++|+||+|+||+++.           
T Consensus        71 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~-~i~h~~l~~~ni~~~~-----------  138 (256)
T cd08530          71 GNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ-KILHRDLKSANILLVA-----------  138 (256)
T ss_pred             CCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCcceEEEec-----------
Confidence            47899999999 889999886532  24588999999999999999999997 9999999999999965           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (256)
T cd08530         139 --------------------------------------------------------------------------------  138 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                               ...++|+|||.+...... .....+++.|+|||.+.+..++.++|+||||+++|+
T Consensus       139 -------------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~  193 (256)
T cd08530         139 -------------------------NDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYE  193 (256)
T ss_pred             -------------------------CCcEEEeeccchhhhccCCcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHH
Confidence                                     456899999998654332 223467889999999999889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||....       ...+..... .+..                                       ...+...+
T Consensus       194 l~~g~~p~~~~~-------~~~~~~~~~-~~~~---------------------------------------~~~~~~~~  226 (256)
T cd08530         194 MATFAPPFEARS-------MQDLRYKVQ-RGKY---------------------------------------PPIPPIYS  226 (256)
T ss_pred             HHhCCCCCCCCC-------HHHHHHHHh-cCCC---------------------------------------CCCchhhC
Confidence            999999996432       111111000 0000                                       01223456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                      .++.++|.+||+.+|.+||++.++|+||++
T Consensus       227 ~~~~~li~~~l~~~p~~Rp~~~~~l~~p~~  256 (256)
T cd08530         227 QDLQNFIRSMLQVKPKLRPNCDKILASPAV  256 (256)
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHhcCCCC
Confidence            789999999999999999999999999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.4e-38  Score=340.13  Aligned_cols=254  Identities=25%  Similarity=0.381  Sum_probs=194.2

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC--
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG--  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~--  117 (530)
                      .+|+.++.||+||||.||+|+++-+|+.||||.+...  ......+.+|+.+|.+|      +|||||++|..|....  
T Consensus       479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArL------nHpNVVRYysAWVEs~~~  552 (1351)
T KOG1035|consen  479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARL------NHPNVVRYYSAWVESTAE  552 (1351)
T ss_pred             hhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhc------CCcceeeeehhhhccCCc
Confidence            5678899999999999999999999999999987665  45567788999999999      8899999998654310  


Q ss_pred             ---------------------------------------------------C----------------------------
Q 045988          118 ---------------------------------------------------P----------------------------  118 (530)
Q Consensus       118 ---------------------------------------------------~----------------------------  118 (530)
                                                                         .                            
T Consensus       553 ~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~  632 (1351)
T KOG1035|consen  553 LTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSN  632 (1351)
T ss_pred             cccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccc
Confidence                                                               0                            


Q ss_pred             ----C----------------------C--------cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 045988          119 ----N----------------------G--------QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLD  163 (530)
Q Consensus       119 ----~----------------------~--------~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~  163 (530)
                          +                      .        ..+||-|||| ...|.+++..... .-....++++++||+.||+
T Consensus       633 tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~-~~~~d~~wrLFreIlEGLa  711 (1351)
T KOG1035|consen  633 TSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHF-NSQRDEAWRLFREILEGLA  711 (1351)
T ss_pred             ccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhccc-chhhHHHHHHHHHHHHHHH
Confidence                0                      0        3589999999 4555555543322 1157889999999999999


Q ss_pred             HHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCC
Q 045988          164 HLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESD  243 (530)
Q Consensus       164 ~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (530)
                      |+|+. |||||||||.||+|+.                                                          
T Consensus       712 YIH~~-giIHRDLKP~NIFLd~----------------------------------------------------------  732 (1351)
T KOG1035|consen  712 YIHDQ-GIIHRDLKPRNIFLDS----------------------------------------------------------  732 (1351)
T ss_pred             HHHhC-ceeeccCCcceeEEcC----------------------------------------------------------
Confidence            99997 9999999999999965                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc------
Q 045988          244 SKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY------  317 (530)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~------  317 (530)
                                                                                ...|||+|||+|+...      
T Consensus       733 ----------------------------------------------------------~~~VKIGDFGLAt~~~~~~~~~  754 (1351)
T KOG1035|consen  733 ----------------------------------------------------------RNSVKIGDFGLATDLKENLESI  754 (1351)
T ss_pred             ----------------------------------------------------------CCCeeecccccchhhhhhhhhH
Confidence                                                                      4679999999996510      


Q ss_pred             ---------------cccCCCCCCCCccCChhhcCCC---CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHH
Q 045988          318 ---------------KQFTNDIQTRQYRCPEVLLGSK---YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLA  379 (530)
Q Consensus       318 ---------------~~~~~~~gt~~y~aPE~l~~~~---~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~  379 (530)
                                     ...+..+||.-|+|||++.+..   |+.|+|+||||+|||||+.   ||..        ..+...
T Consensus       755 d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~T--------sMERa~  823 (1351)
T KOG1035|consen  755 DQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGT--------SMERAS  823 (1351)
T ss_pred             hhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc---cCCc--------hHHHHH
Confidence                           1246679999999999998654   9999999999999999996   5742        222222


Q ss_pred             HHHHH-hCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHH
Q 045988          380 LMMEL-LGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQ  458 (530)
Q Consensus       380 ~i~~~-~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~e  458 (530)
                      .+..+ -|..|..                                    ..+....-+.-..+|++||+.||.+||||.|
T Consensus       824 iL~~LR~g~iP~~------------------------------------~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~e  867 (1351)
T KOG1035|consen  824 ILTNLRKGSIPEP------------------------------------ADFFDPEHPEEASLIRWLLSHDPSKRPTATE  867 (1351)
T ss_pred             HHHhcccCCCCCC------------------------------------cccccccchHHHHHHHHHhcCCCccCCCHHH
Confidence            22221 1111111                                    1122223355679999999999999999999


Q ss_pred             HhcCCCCC
Q 045988          459 CLTHPWIN  466 (530)
Q Consensus       459 lL~hp~f~  466 (530)
                      +|++.||-
T Consensus       868 LL~s~llp  875 (1351)
T KOG1035|consen  868 LLNSELLP  875 (1351)
T ss_pred             HhhccCCC
Confidence            99999998

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=3.1e-37  Score=300.97  Aligned_cols=243  Identities=23%  Similarity=0.354  Sum_probs=194.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.+.||+|+||.||++.  .+++.||+|+++... ....+.+|+.+++++      +||||+++++++..     
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~--~~~~~~~iK~~~~~~-~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~-----   70 (254)
T cd05083           5 LQKLTLGEIIGEGEFGAVLQGE--YTGQKVAVKNIKCDV-TAQAFLEETAVMTKL------HHKNLVRLLGVILH-----   70 (254)
T ss_pred             HHHceeeeeeccCCCCceEecc--cCCCceEEEeecCcc-hHHHHHHHHHHHHhC------CCCCcCeEEEEEcC-----
Confidence            4679999999999999999985  578899999887543 346788999999998      78889999999864     


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...++||||+ +++|.+++.......+++..+..++.||+.||.|||++ |++||||||+|||++.              
T Consensus        71 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~H~dl~p~nili~~--------------  135 (254)
T cd05083          71 NGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK-KLVHRDLAARNILVSE--------------  135 (254)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccccCcceEEEcC--------------
Confidence            2369999999 88999999765545589999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (254)
T cd05083         136 --------------------------------------------------------------------------------  135 (254)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-  358 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-  358 (530)
                                            ++.++|+|||++............+..|+|||.+.+..++.++|+|||||++|+|++ 
T Consensus       136 ----------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~  193 (254)
T cd05083         136 ----------------------DGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSY  193 (254)
T ss_pred             ----------------------CCcEEECCCccceeccccCCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhC
Confidence                                  456899999998754433334445678999999988889999999999999999997 


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |.+||....       .......... +.                                       ....+...+..+
T Consensus       194 g~~p~~~~~-------~~~~~~~~~~-~~---------------------------------------~~~~~~~~~~~~  226 (254)
T cd05083         194 GRAPYPKMS-------LKEVKECVEK-GY---------------------------------------RMEPPEGCPADV  226 (254)
T ss_pred             CCCCCccCC-------HHHHHHHHhC-CC---------------------------------------CCCCCCcCCHHH
Confidence            999996432       1111110000 00                                       001123446788


Q ss_pred             HHHHhhccCcCCCCCcCHHHHhc
Q 045988          439 ADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+||.+||..+|.+||++++++.
T Consensus       227 ~~li~~~l~~~p~~Rp~~~~l~~  249 (254)
T cd05083         227 YVLMTSCWETEPKKRPSFHKLRE  249 (254)
T ss_pred             HHHHHHHcCCChhhCcCHHHHHH
Confidence            99999999999999999999986

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=4.1e-37  Score=302.20  Aligned_cols=249  Identities=24%  Similarity=0.363  Sum_probs=195.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|.+.+.||+|+||.||+|++..+++.||||.+....    .....+.+|+.+++.+      .|+||+++++.|.   
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~---   72 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQL------NHPNVIKYYASFI---   72 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHc------cCCchhhhhheeE---
Confidence            57999999999999999999999999999999776432    2335677899999998      7888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                       .....++||||+ +++|.+++....  ...+++..+..++.||+.||.|||++ ||+|+||||+||+++.         
T Consensus        73 -~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~p~nili~~---------  141 (267)
T cd08229          73 -EDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR-RVMHRDIKPANVFITA---------  141 (267)
T ss_pred             -eCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEcC---------
Confidence             447899999999 789999886432  23489999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (267)
T cd08229         142 --------------------------------------------------------------------------------  141 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                                 +..++|+|||++......   .....|+..|+|||.+.+..++.++|+|||||
T Consensus       142 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~  194 (267)
T cd08229         142 ---------------------------TGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGC  194 (267)
T ss_pred             ---------------------------CCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHH
Confidence                                       456999999988654322   22346889999999998888999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|..||.+...     ....+........                              .         .....
T Consensus       195 il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~------------------------------~---------~~~~~  230 (267)
T cd08229         195 LLYEMAALQSPFYGDKM-----NLYSLCKKIEQCD------------------------------Y---------PPLPS  230 (267)
T ss_pred             HHHHHHhCCCCcccccc-----hHHHHhhhhhcCC------------------------------C---------CCCCc
Confidence            99999999999954321     0001000000000                              0         00011


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ...+..+.+||.+||..||.+|||+.+|+.
T Consensus       231 ~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~  260 (267)
T cd08229         231 DHYSEELRQLVNMCINPDPEKRPDITYVYD  260 (267)
T ss_pred             ccccHHHHHHHHHhcCCCcccCCCHHHHHH
Confidence            235678999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.7e-36  Score=297.56  Aligned_cols=248  Identities=26%  Similarity=0.415  Sum_probs=196.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|.++...    .....+.+|+++++++      .|++|+++++.+..  
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~------~~~~i~~~~~~~~~--   73 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQL------DHPNVIKYLASFIE--   73 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhC------CCCCeeeeeeeeec--
Confidence            58999999999999999999999999999999876422    2345678899999999      78889999999984  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                        ....++||||+ +++|.+++....  ...+++..+..++.||+.||.|||+. ||+||||||+||+++.         
T Consensus        74 --~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~dl~p~nil~~~---------  141 (267)
T cd08224          74 --NNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK-RIMHRDIKPANVFITA---------  141 (267)
T ss_pred             --CCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC-CEecCCcChhhEEECC---------
Confidence              47899999999 889999886432  23488999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (267)
T cd08224         142 --------------------------------------------------------------------------------  141 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                                 ++.++|+|||.+......   .....++..|+|||.+.+..++.++|||||||
T Consensus       142 ---------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~  194 (267)
T cd08224         142 ---------------------------TGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGC  194 (267)
T ss_pred             ---------------------------CCcEEEeccceeeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHH
Confidence                                       456899999998653221   23346889999999999888999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|..||.....     .   +..+...+..                   +                  .....+
T Consensus       195 il~~l~~g~~p~~~~~~-----~---~~~~~~~~~~-------------------~------------------~~~~~~  229 (267)
T cd08224         195 LLYEMAALQSPFYGDKM-----N---LYSLCKKIEK-------------------C------------------DYPPLP  229 (267)
T ss_pred             HHHHHHHCCCCcccCCc-----c---HHHHHhhhhc-------------------C------------------CCCCCC
Confidence            99999999999953220     0   1011000000                   0                  000011


Q ss_pred             -hhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          432 -EKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       432 -~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                       ...+..+.++|.+||..+|.+|||+.+++.
T Consensus       230 ~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~  260 (267)
T cd08224         230 ADHYSEELRDLVSRCINPDPEKRPDISYVLQ  260 (267)
T ss_pred             hhhcCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence             134568899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2.4e-37  Score=307.07  Aligned_cols=263  Identities=23%  Similarity=0.304  Sum_probs=194.6

Q ss_pred             CCEEEEEEeccccceEEEEEEe----CCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWD----TQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~----~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .-|++++.||+|+||.||+|..    ..++..||+|.++...  .....+.+|+.+++++      .||||+++++++..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~   77 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL------YHENIVKYKGICTE   77 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhC------CCCCeeeeeeEEec
Confidence            3579999999999999999974    4568999999886442  2345678899999998      78889999998875


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                      .  .....++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.         
T Consensus        78 ~--~~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~~-gi~H~dlkp~Nil~~~---------  144 (284)
T cd05079          78 D--GGNGIKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGSR-QYVHRDLAARNVLVES---------  144 (284)
T ss_pred             C--CCCceEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecccchheEEEcC---------
Confidence            4  346789999999 899999886432 3489999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (284)
T cd05079         145 --------------------------------------------------------------------------------  144 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 ++.++|+|||++......      .....++..|+|||++.+..++.++||||
T Consensus       145 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~s  197 (284)
T cd05079         145 ---------------------------EHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWS  197 (284)
T ss_pred             ---------------------------CCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchh
Confidence                                       456899999998654321      12345677899999999888999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++++.|+....           ..+....+........         .     .......       .....
T Consensus       198 lG~il~ellt~~~~~~~~~-----------~~~~~~~~~~~~~~~~---------~-----~~~~~~~-------~~~~~  245 (284)
T cd05079         198 FGVTLYELLTYCDSESSPM-----------TLFLKMIGPTHGQMTV---------T-----RLVRVLE-------EGKRL  245 (284)
T ss_pred             hhhhhhhhhcCCCCCcccc-----------chhhhhcccccccccH---------H-----HHHHHHH-------cCccC
Confidence            9999999999887653111           0111111111100000         0     0000000       00011


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..+...+..+.+||.+||+.||.+|||+.+++++
T Consensus       246 ~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  279 (284)
T cd05079         246 PRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEG  279 (284)
T ss_pred             CCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence            2233457889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=6e-37  Score=304.76  Aligned_cols=254  Identities=26%  Similarity=0.385  Sum_probs=196.7

Q ss_pred             CEEEEEEeccccceEEEEEEeC---CCCeEEEEEEecccc-----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~-----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +|++.+.||+|+||.||+|++.   .+++.||||+++...     .....+.+|+.++.++.     +|+||+++++.|.
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~~~~i~~~~~~~~   75 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVR-----RCPFLVTLHYAFQ   75 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhcc-----CCcchhhhheeee
Confidence            4899999999999999999864   467899999887532     22345678999999885     5889999999987


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          .+...|+||||+ +++|.+++...  ..+++..++.++.||+.||.|||+. |++||||||.||+++.        
T Consensus        76 ----~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~-~~~H~dl~p~nil~~~--------  140 (288)
T cd05583          76 ----TDTKLHLILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLALDHLHQL-GIIYRDIKLENILLDS--------  140 (288)
T ss_pred             ----cCCEEEEEEecCCCCcHHHHHhhc--CCcCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEECC--------
Confidence                457899999999 78998888642  3488999999999999999999996 9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (288)
T cd05583         141 --------------------------------------------------------------------------------  140 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCC--CCCcchhH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSK--YSTPADLW  347 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~--~~~~~DiW  347 (530)
                                                  +..++|+|||++......    .....|+..|+|||.+.+..  ++.++|||
T Consensus       141 ----------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~  192 (288)
T cd05583         141 ----------------------------EGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWW  192 (288)
T ss_pred             ----------------------------CCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhH
Confidence                                        456899999998653222    12345889999999987654  78899999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||+++|+|++|..||......      .....+...                                      .....
T Consensus       193 slG~il~el~tg~~p~~~~~~~------~~~~~~~~~--------------------------------------~~~~~  228 (288)
T cd05583         193 SLGVLTFELLTGASPFTVDGEQ------NSQSEISRR--------------------------------------ILKSK  228 (288)
T ss_pred             HHHHHHHHHHhCCCCcccCccc------chHHHHHHH--------------------------------------HHccC
Confidence            9999999999999999532210      001111100                                      00001


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcC---HHHHhcCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPT---AAQCLTHPWINVG  468 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpt---a~elL~hp~f~~~  468 (530)
                      ...+...+..+.+||.+||+.||++|||   +.++|+||||+.-
T Consensus       229 ~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~~  272 (288)
T cd05583         229 PPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGI  272 (288)
T ss_pred             CCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCcccccC
Confidence            1223345678899999999999999998   5778999999753

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=5.2e-37  Score=318.27  Aligned_cols=253  Identities=21%  Similarity=0.323  Sum_probs=195.6

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .+..++|.+.++||+|+||.||+|++.     .+++.||+|+++...  .....+.+|+.+|.++.     .|||||+++
T Consensus        33 ~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~-----~H~niv~~~  107 (401)
T cd05107          33 EMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLG-----PHLNIVNLL  107 (401)
T ss_pred             eecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcC-----CCCCeEEEE
Confidence            344578999999999999999999853     356789999987643  22346788999999983     389999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc----------------------------------------------
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY----------------------------------------------  143 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~----------------------------------------------  143 (530)
                      +++..    ...+++||||| +++|.+++.....                                              
T Consensus       108 ~~~~~----~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T cd05107         108 GACTK----GGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSK  183 (401)
T ss_pred             EEEcc----CCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCC
Confidence            99984    46899999999 8999998864321                                              


Q ss_pred             --------------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcee
Q 045988          144 --------------------------------------------------RGVPLHMVKEICFHILVGLDHLHRELSIIH  173 (530)
Q Consensus       144 --------------------------------------------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvH  173 (530)
                                                                        ..+++..+..|+.||+.||+|||++ ||+|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivH  262 (401)
T cd05107         184 DESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASK-NCVH  262 (401)
T ss_pred             ccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcC-CcCc
Confidence                                                              1356778889999999999999997 9999


Q ss_pred             ccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCC
Q 045988          174 TDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTS  253 (530)
Q Consensus       174 rDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (530)
                      |||||+|||++.                                                                    
T Consensus       263 rdlkp~NiLl~~--------------------------------------------------------------------  274 (401)
T cd05107         263 RDLAARNVLICE--------------------------------------------------------------------  274 (401)
T ss_pred             ccCCcceEEEeC--------------------------------------------------------------------
Confidence            999999999965                                                                    


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCC
Q 045988          254 VDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQ  328 (530)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~  328 (530)
                                                                      ...++|+|||++.....     ......++..
T Consensus       275 ------------------------------------------------~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~  306 (401)
T cd05107         275 ------------------------------------------------GKLVKICDFGLARDIMRDSNYISKGSTFLPLK  306 (401)
T ss_pred             ------------------------------------------------CCEEEEEecCcceecccccccccCCCcCCCCc
Confidence                                                            45689999999865321     1223456788


Q ss_pred             ccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccC
Q 045988          329 YRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG  407 (530)
Q Consensus       329 y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  407 (530)
                      |+|||++.+..++.++|||||||++|||++ |..||....      ........+  .+..                   
T Consensus       307 y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~------~~~~~~~~~--~~~~-------------------  359 (401)
T cd05107         307 WMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELP------MNEQFYNAI--KRGY-------------------  359 (401)
T ss_pred             eeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCC------chHHHHHHH--HcCC-------------------
Confidence            999999998889999999999999999998 889995432      111111110  0000                   


Q ss_pred             ccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                         ....+...+.++.+||.+||+.+|.+||++++|+..
T Consensus       360 -------------------~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~  395 (401)
T cd05107         360 -------------------RMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHL  395 (401)
T ss_pred             -------------------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                               011223456789999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=5.7e-37  Score=299.72  Aligned_cols=236  Identities=22%  Similarity=0.361  Sum_probs=184.8

Q ss_pred             EeccccceEEEEEEe--CCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           49 KLGWGHFSTVWLAWD--TQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        49 ~LG~G~fg~Vy~a~~--~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +||+|+||.||+|..  ..++..||+|+++....   ..+.+.+|+.+++.+      .|+||+++++++..     ...
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~-----~~~   70 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQL------DNPYIVRMIGICEA-----ESW   70 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhC------CCCCcceEEEEEcC-----CCc
Confidence            689999999999964  45689999999875432   345678899999998      78889999988752     467


Q ss_pred             EEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcc
Q 045988          124 CMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPML  202 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~  202 (530)
                      ++||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||.|||++.                 
T Consensus        71 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~-~i~H~dlkp~nill~~-----------------  130 (257)
T cd05116          71 MLVMELAELGPLNKFLQKN--KHVTEKNITELVHQVSMGMKYLEET-NFVHRDLAARNVLLVT-----------------  130 (257)
T ss_pred             EEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccchhhEEEcC-----------------
Confidence            9999999 78899988643  3489999999999999999999997 9999999999999954                 


Q ss_pred             ccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccc
Q 045988          203 LTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGI  282 (530)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (530)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (257)
T cd05116         131 --------------------------------------------------------------------------------  130 (257)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                         +..++|+|||.+......      .....++..|+|||.+....++.++|||||||++|||
T Consensus       131 -------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el  191 (257)
T cd05116         131 -------------------QHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEA  191 (257)
T ss_pred             -------------------CCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHH
Confidence                               456899999998654322      1222345789999999888899999999999999999


Q ss_pred             Hh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          357 AT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       357 lt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      ++ |.+||....      .......+..  +                                       .....+...+
T Consensus       192 ~t~g~~p~~~~~------~~~~~~~i~~--~---------------------------------------~~~~~~~~~~  224 (257)
T cd05116         192 FSYGQKPYKGMK------GNEVTQMIES--G---------------------------------------ERMECPQRCP  224 (257)
T ss_pred             HhCCCCCCCCCC------HHHHHHHHHC--C---------------------------------------CCCCCCCCCC
Confidence            98 999996432      1111111110  0                                       0112233456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +++.+||.+||+.||++||++++|..
T Consensus       225 ~~l~~li~~~~~~~p~~Rp~~~~i~~  250 (257)
T cd05116         225 PEMYDLMKLCWTYGVDERPGFAVVEL  250 (257)
T ss_pred             HHHHHHHHHHhccCchhCcCHHHHHH
Confidence            88999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7e-37  Score=299.00  Aligned_cols=237  Identities=23%  Similarity=0.370  Sum_probs=186.4

Q ss_pred             EEeccccceEEEEEEeCCCC---eEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           48 SKLGWGHFSTVWLAWDTQTS---HYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~---~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      ++||+|+||.||+|....++   ..||+|++.....  ....+.+|+.+++.+      .|+||+++++++..     ..
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~-----~~   69 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQL------DHPCIVRLIGVCKG-----EP   69 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhc------CCCCeeeEEEEEcC-----Cc
Confidence            47999999999999876554   7999999876554  456678899999998      78889999997652     46


Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      .++||||+ +++|.+++....  .+++..+..++.||+.||+|||.+ ||+||||||+|||++.                
T Consensus        70 ~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~~-~i~H~di~p~nili~~----------------  130 (257)
T cd05060          70 LMLVMELAPLGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLESK-HFVHRDLAARNVLLVN----------------  130 (257)
T ss_pred             eEEEEEeCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhhc-CeeccCcccceEEEcC----------------
Confidence            89999999 889999997543  589999999999999999999997 9999999999999955                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (257)
T cd05060         131 --------------------------------------------------------------------------------  130 (257)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCcccccccccC------CCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFT------NDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~------~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                          ++.++|+|||.+........      ...++..|+|||.+.+..++.++|||||||++|+
T Consensus       131 --------------------~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  190 (257)
T cd05060         131 --------------------RHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWE  190 (257)
T ss_pred             --------------------CCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHH
Confidence                                45699999999875432211      1122457999999998889999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          356 LAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       356 llt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |++ |.+||....      .......+. ..  .                                      ....+...
T Consensus       191 ~~~~g~~p~~~~~------~~~~~~~~~-~~--~--------------------------------------~~~~~~~~  223 (257)
T cd05060         191 AFSYGAKPYGEMK------GAEVIAMLE-SG--E--------------------------------------RLPRPEEC  223 (257)
T ss_pred             HHcCCCCCcccCC------HHHHHHHHH-cC--C--------------------------------------cCCCCCCC
Confidence            998 999995332      111111110 00  0                                      01122344


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +..+.+||.+||..||.+||++.++++
T Consensus       224 ~~~l~~li~~cl~~~p~~Rp~~~~l~~  250 (257)
T cd05060         224 PQEIYSIMLSCWKYRPEDRPTFSELES  250 (257)
T ss_pred             CHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            678999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=5.8e-37  Score=311.72  Aligned_cols=252  Identities=23%  Similarity=0.343  Sum_probs=194.3

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCC-------CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQT-------SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~-------~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      .+...+|++.+.||+|+||.||+|++...       +..||+|+++...  .....+.+|+++++++.     .||||++
T Consensus         8 ~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~   82 (334)
T cd05100           8 ELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIG-----KHKNIIN   82 (334)
T ss_pred             ccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhc-----CCCCeee
Confidence            34456899999999999999999986432       3479999887542  23456788999999884     5888999


Q ss_pred             ecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcee
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD--------------YRGVPLHMVKEICFHILVGLDHLHRELSIIH  173 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~--------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvH  173 (530)
                      +++++..    ...+++||||+ +++|.+++....              ...++...+..++.||+.||.|||++ ||+|
T Consensus        83 ~~~~~~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~-givH  157 (334)
T cd05100          83 LLGACTQ----DGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ-KCIH  157 (334)
T ss_pred             eeEEEcc----CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC-Ceec
Confidence            9999884    46799999999 889999987532              12367788999999999999999997 9999


Q ss_pred             ccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCC
Q 045988          174 TDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTS  253 (530)
Q Consensus       174 rDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (530)
                      |||||+|||++.                                                                    
T Consensus       158 ~dlkp~Nill~~--------------------------------------------------------------------  169 (334)
T cd05100         158 RDLAARNVLVTE--------------------------------------------------------------------  169 (334)
T ss_pred             cccccceEEEcC--------------------------------------------------------------------
Confidence            999999999954                                                                    


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCC
Q 045988          254 VDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQ  328 (530)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~  328 (530)
                                                                      +..++|+|||++......     .....++..
T Consensus       170 ------------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~  201 (334)
T cd05100         170 ------------------------------------------------DNVMKIADFGLARDVHNIDYYKKTTNGRLPVK  201 (334)
T ss_pred             ------------------------------------------------CCcEEECCcccceecccccccccccCCCcCce
Confidence                                                            456899999998653321     122234567


Q ss_pred             ccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccC
Q 045988          329 YRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG  407 (530)
Q Consensus       329 y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  407 (530)
                      |+|||++.+..++.++|||||||++|+|++ |..||....      .......+.   ..                    
T Consensus       202 y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~---~~--------------------  252 (334)
T cd05100         202 WMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP------VEELFKLLK---EG--------------------  252 (334)
T ss_pred             EcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHH---cC--------------------
Confidence            999999999889999999999999999998 889996432      111111110   00                    


Q ss_pred             ccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                        .....+...+..+.+||.+||+.+|.+||++.|+|++
T Consensus       253 ------------------~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~  289 (334)
T cd05100         253 ------------------HRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVED  289 (334)
T ss_pred             ------------------CCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence                              0011223445789999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=6.6e-37  Score=307.02  Aligned_cols=250  Identities=22%  Similarity=0.347  Sum_probs=194.1

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeC-------CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDT-------QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~-------~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      ...+|.+.+.||+|+||.||+|++.       .++..||+|++....  .....+.+|+.+++.+.     .||||++++
T Consensus        13 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~i~~~~   87 (304)
T cd05101          13 SRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----KHKNIINLL   87 (304)
T ss_pred             cHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhc-----cCCCchhee
Confidence            3678999999999999999999753       235689999887532  33456788999998884     588899999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceecc
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTD  175 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrD  175 (530)
                      +.+..    ....|+||||+ +++|.+++.....              ..++...+..++.||+.||.|||++ ||+|||
T Consensus        88 ~~~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-givH~d  162 (304)
T cd05101          88 GACTQ----DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ-KCIHRD  162 (304)
T ss_pred             EEEec----CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC-Ceeecc
Confidence            99884    46899999999 8899999875321              2377888999999999999999997 999999


Q ss_pred             CCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCC
Q 045988          176 LKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVD  255 (530)
Q Consensus       176 IKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (530)
                      |||+|||++.                                                                      
T Consensus       163 lkp~Nili~~----------------------------------------------------------------------  172 (304)
T cd05101         163 LAARNVLVTE----------------------------------------------------------------------  172 (304)
T ss_pred             cccceEEEcC----------------------------------------------------------------------
Confidence            9999999954                                                                      


Q ss_pred             CCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCcc
Q 045988          256 AEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYR  330 (530)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~  330 (530)
                                                                    .+.++|+|||.+......     .....+++.|+
T Consensus       173 ----------------------------------------------~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~  206 (304)
T cd05101         173 ----------------------------------------------NNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWM  206 (304)
T ss_pred             ----------------------------------------------CCcEEECCCccceecccccccccccCCCCCceee
Confidence                                                          456899999998654221     12234567899


Q ss_pred             CChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcc
Q 045988          331 CPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL  409 (530)
Q Consensus       331 aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  409 (530)
                      |||++.+..++.++|||||||++|+|++ |..||...+       ..   .+...+...                     
T Consensus       207 aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-------~~---~~~~~~~~~---------------------  255 (304)
T cd05101         207 APEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP-------VE---ELFKLLKEG---------------------  255 (304)
T ss_pred             CchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC-------HH---HHHHHHHcC---------------------
Confidence            9999998889999999999999999998 788885432       11   111111000                     


Q ss_pred             ccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          410 RHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                      .....+...+..+.+||.+||..+|.+|||+.|+++.
T Consensus       256 ----------------~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  292 (304)
T cd05101         256 ----------------HRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVED  292 (304)
T ss_pred             ----------------CcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHH
Confidence                            0001223456789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=1.1e-36  Score=297.17  Aligned_cols=245  Identities=21%  Similarity=0.390  Sum_probs=193.2

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      .+|++.+.||+|+||.||+|.+. .+..+|+|++.........+.+|+++++++      .||||+++++++.    ...
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~~~   72 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWL-EKRKVAIKTIREGAMSEEDFIEEAQVMMKL------SHPKLVQLYGVCT----ERS   72 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEe-CCCeEEEEECCCCCCCHHHHHHHHHHHHhC------CCCCeeeEEEEEc----cCC
Confidence            57999999999999999999875 467899998876655566788999999998      7888999999987    446


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ..|+||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||+++.               
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~-~i~h~dl~p~ni~i~~---------------  135 (256)
T cd05112          73 PICLVFEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESS-NVIHRDLAARNCLVGE---------------  135 (256)
T ss_pred             ceEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHC-CccccccccceEEEcC---------------
Confidence            899999999 889988886432 3488999999999999999999997 9999999999999954               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (256)
T cd05112         136 --------------------------------------------------------------------------------  135 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                           ...++|+|||.+......    .....++..|+|||++.+..++.++|||||||++|+|
T Consensus       136 ---------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el  194 (256)
T cd05112         136 ---------------------NQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEV  194 (256)
T ss_pred             ---------------------CCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHH
Confidence                                 356899999998643222    1122345689999999888899999999999999999


Q ss_pred             Hh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          357 AT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       357 lt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      ++ |.+||....      .......+...                                         .....+...+
T Consensus       195 ~~~g~~p~~~~~------~~~~~~~~~~~-----------------------------------------~~~~~~~~~~  227 (256)
T cd05112         195 FSEGKTPYENRS------NSEVVETINAG-----------------------------------------FRLYKPRLAS  227 (256)
T ss_pred             HcCCCCCCCcCC------HHHHHHHHhCC-----------------------------------------CCCCCCCCCC
Confidence            98 999995322      11111111000                                         0001112235


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..+.+|+.+||+.+|.+|||+.+++++
T Consensus       228 ~~~~~l~~~~l~~~p~~Rp~~~~~l~~  254 (256)
T cd05112         228 QSVYELMQHCWKERPEDRPSFSLLLHQ  254 (256)
T ss_pred             HHHHHHHHHHcccChhhCCCHHHHHHh
Confidence            789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=9.5e-37  Score=297.40  Aligned_cols=244  Identities=26%  Similarity=0.415  Sum_probs=194.6

Q ss_pred             EEEEEEeccccceEEEEEEeCCCC----eEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTS----HYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~----~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      +++.+.||.|+||.||+|.+...+    ..||+|+++....  ....+..|+.+++.+      .|+||+++++.+..  
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~--   72 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKL------DHPNIVKLLGVCTE--   72 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhc------CCCchheEEEEEcC--
Confidence            457899999999999999988766    9999999876543  456788899999998      68889999999984  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ....++||||+ +++|.+++.......+++..+..++.||+.||+|||++ |++||||||+||+++.           
T Consensus        73 --~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~-~~~h~dl~~~nil~~~-----------  138 (258)
T smart00219       73 --EEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK-NFIHRDLAARNCLVGE-----------  138 (258)
T ss_pred             --CCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC-CeeecccccceEEEcc-----------
Confidence              47899999999 88999998754433389999999999999999999997 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (258)
T smart00219      139 --------------------------------------------------------------------------------  138 (258)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccC----CCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFT----NDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~----~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                               ...++|+|||.+........    ...+++.|+|||.+.+..++.++|||||||+
T Consensus       139 -------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i  193 (258)
T smart00219      139 -------------------------NLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVL  193 (258)
T ss_pred             -------------------------CCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHH
Confidence                                     45699999999965432211    1236789999999988889999999999999


Q ss_pred             HHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          353 CFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       353 l~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      +|+|++ |.+||....      .......+..  +.                                       ....+
T Consensus       194 ~~~l~~~g~~p~~~~~------~~~~~~~~~~--~~---------------------------------------~~~~~  226 (258)
T smart00219      194 LWEIFTLGESPYPGMS------NEEVLEYLKK--GY---------------------------------------RLPKP  226 (258)
T ss_pred             HHHHHhCCCCCCCCCC------HHHHHHHHhc--CC---------------------------------------CCCCC
Confidence            999998 889885422      1111111100  00                                       01112


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ...+.++.+++.+||..||.+|||+.|+++
T Consensus       227 ~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      227 ENCPPEIYKLMLQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             CcCCHHHHHHHHHHCcCChhhCcCHHHHHh
Confidence            235678999999999999999999999986

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=5.7e-37  Score=304.91  Aligned_cols=247  Identities=20%  Similarity=0.341  Sum_probs=192.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .++|++.+.||+|+||.||+|.+..     ++..||||++....  .....+.+|+.+++++      .||||+++++++
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l------~h~~iv~~~~~~   77 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF------DHPNIVKLLGVC   77 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhc------CCCchheEEEEE
Confidence            5689999999999999999998743     67899999887543  2245677899999999      788899999998


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------------CCCCHHHHHHHHHHHHHHHHHHHhhCCce
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------------RGVPLHMVKEICFHILVGLDHLHRELSII  172 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------------~~l~~~~~~~i~~qll~aL~~LH~~~gIv  172 (530)
                      .    .+...++||||+ +++|.+++.....                    ..+++..+..++.||+.||+|||++ |++
T Consensus        78 ~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~-~i~  152 (288)
T cd05050          78 A----VGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER-KFV  152 (288)
T ss_pred             c----CCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC-Cee
Confidence            8    446789999999 7899999864321                    2367888999999999999999997 999


Q ss_pred             eccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCC
Q 045988          173 HTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHT  252 (530)
Q Consensus       173 HrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (530)
                      ||||||+|||++.                                                                   
T Consensus       153 H~dl~p~nil~~~-------------------------------------------------------------------  165 (288)
T cd05050         153 HRDLATRNCLVGE-------------------------------------------------------------------  165 (288)
T ss_pred             cccccHhheEecC-------------------------------------------------------------------
Confidence            9999999999954                                                                   


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCC
Q 045988          253 SVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTR  327 (530)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~  327 (530)
                                                                       ++.++|+|||.+......     .....++.
T Consensus       166 -------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~  196 (288)
T cd05050         166 -------------------------------------------------NMVVKIADFGLSRNIYSADYYKASENDAIPI  196 (288)
T ss_pred             -------------------------------------------------CCceEECccccceecccCccccccCCCccCh
Confidence                                                             456899999998643221     12234466


Q ss_pred             CccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccccc
Q 045988          328 QYRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH  406 (530)
Q Consensus       328 ~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  406 (530)
                      .|+|||++.+..++.++|||||||++|+|++ |..||.+..      ..+....+..  +.                   
T Consensus       197 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~------~~~~~~~~~~--~~-------------------  249 (288)
T cd05050         197 RWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA------HEEVIYYVRD--GN-------------------  249 (288)
T ss_pred             hhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhc--CC-------------------
Confidence            7999999998889999999999999999997 888885432      1111111100  00                   


Q ss_pred             CccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                          ....+...+..+.+||.+||+.||.+|||+.|+++
T Consensus       250 --------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~  284 (288)
T cd05050         250 --------------------VLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINR  284 (288)
T ss_pred             --------------------CCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence                                00112334678999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.6e-36  Score=301.01  Aligned_cols=262  Identities=21%  Similarity=0.262  Sum_probs=193.5

Q ss_pred             CCCEEEEEEeccccceEEEEEE----eCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAW----DTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~----~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..+|++++.||+|+||.||+|.    +..++..||||.+.... .....+.+|+++++++      .||||+++++++..
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~   76 (284)
T cd05081           3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSL------QHDNIVKYKGVCYS   76 (284)
T ss_pred             cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhC------CCCCeeEEEEEEcc
Confidence            4589999999999999999997    34578899999876543 2345678899999998      78889999998764


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                      .  +...+++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.         
T Consensus        77 ~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~aL~~LH~~-~i~H~dlkp~nili~~---------  143 (284)
T cd05081          77 A--GRRNLRLVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKGMEYLGSK-RYVHRDLATRNILVES---------  143 (284)
T ss_pred             C--CCCceEEEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCCHhhEEECC---------
Confidence            3  345789999999 899999986432 3489999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (284)
T cd05081         144 --------------------------------------------------------------------------------  143 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc------CCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF------TNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 +..++|+|||++.......      ....++..|+|||++.+..++.++||||
T Consensus       144 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  196 (284)
T cd05081         144 ---------------------------ENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWS  196 (284)
T ss_pred             ---------------------------CCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHH
Confidence                                       4568999999987543221      1122345699999999888999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh--
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE--  426 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  426 (530)
                      |||++|+|++|..|+.....           ......+......        ..      ..        .+...+..  
T Consensus       197 lG~~l~el~~~~~~~~~~~~-----------~~~~~~~~~~~~~--------~~------~~--------~~~~~~~~~~  243 (284)
T cd05081         197 FGVVLYELFTYSDKSCSPPA-----------EFMRMMGNDKQGQ--------MI------VY--------HLIELLKNNG  243 (284)
T ss_pred             HHHHHHHHhhcCCcCCCcch-----------hhhhhcccccccc--------cc------hH--------HHHHHHhcCC
Confidence            99999999999877632210           0011111100000        00      00        00000000  


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ....+...+..+.+||.+||..+|++|||+.|+++
T Consensus       244 ~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05081         244 RLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELAL  278 (284)
T ss_pred             cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            11223345678999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=9.2e-37  Score=302.19  Aligned_cols=247  Identities=20%  Similarity=0.283  Sum_probs=189.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCe----EEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSH----YVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~----~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      +..++|++.+.||+|+||+||+|....++.    .||+|.+....  .....+..|+.+++++      .||||++++++
T Consensus         4 ~~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l------~h~~iv~~~~~   77 (279)
T cd05111           4 LKETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSL------DHAYIVRLLGI   77 (279)
T ss_pred             CCHhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcC------CCCCcceEEEE
Confidence            456789999999999999999999877775    47777765332  1234556677777766      78999999998


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +..     ...++||||+ +++|.+++.... ..+++..+..|+.||+.||+|||++ ||+||||||+|||++.      
T Consensus        78 ~~~-----~~~~~i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~iiH~dlkp~nili~~------  144 (279)
T cd05111          78 CPG-----ASLQLVTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKGMYYLEEH-RMVHRNLAARNILLKS------  144 (279)
T ss_pred             ECC-----CccEEEEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CEeccccCcceEEEcC------
Confidence            652     4578899999 899999986433 3489999999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (279)
T cd05111         145 --------------------------------------------------------------------------------  144 (279)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                    +..++|+|||.+......     .....++..|+|||.+.+..++.++||
T Consensus       145 ------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv  194 (279)
T cd05111         145 ------------------------------DSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDV  194 (279)
T ss_pred             ------------------------------CCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhH
Confidence                                          456899999999653221     223346778999999998889999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          347 WSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       347 WSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      |||||++|||++ |..||.+..       ...+..+... +..                                     
T Consensus       195 ~slG~il~el~t~g~~p~~~~~-------~~~~~~~~~~-~~~-------------------------------------  229 (279)
T cd05111         195 WSYGVTVWEMMSYGAEPYAGMR-------PHEVPDLLEK-GER-------------------------------------  229 (279)
T ss_pred             HHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHHC-CCc-------------------------------------
Confidence            999999999998 999996432       1111111110 000                                     


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                        ...+...+.++.+++.+||..||++|||+.|+++
T Consensus       230 --~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~  263 (279)
T cd05111         230 --LAQPQICTIDVYMVMVKCWMIDENVRPTFKELAN  263 (279)
T ss_pred             --CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence              0011123457889999999999999999999987

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1e-36  Score=303.45  Aligned_cols=245  Identities=24%  Similarity=0.371  Sum_probs=190.8

Q ss_pred             CEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +|++.+.||+|+||.||+|.+..     ....+|+|++.....  ....+.+|+.+++.+      .||||+++++.+..
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~   74 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQV------NHPHVIKLYGACSQ   74 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhC------CCCCEeeEEEEEec
Confidence            58899999999999999998653     236799998775432  245678899999998      78889999999884


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhc----------------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCce
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYAD----------------------YRGVPLHMVKEICFHILVGLDHLHRELSII  172 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~----------------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIv  172 (530)
                          ....++||||+ +++|.+++....                      ...+++..+..++.|++.||+|||++ ||+
T Consensus        75 ----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-~iv  149 (290)
T cd05045          75 ----DGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM-KLV  149 (290)
T ss_pred             ----CCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence                46789999999 799999886421                      12378889999999999999999997 999


Q ss_pred             eccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCC
Q 045988          173 HTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHT  252 (530)
Q Consensus       173 HrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (530)
                      ||||||+|||++.                                                                   
T Consensus       150 H~dikp~nill~~-------------------------------------------------------------------  162 (290)
T cd05045         150 HRDLAARNVLVAE-------------------------------------------------------------------  162 (290)
T ss_pred             hhhhhhheEEEcC-------------------------------------------------------------------
Confidence            9999999999954                                                                   


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCC
Q 045988          253 SVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTR  327 (530)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~  327 (530)
                                                                       +..++|+|||++......     .....++.
T Consensus       163 -------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~  193 (290)
T cd05045         163 -------------------------------------------------GRKMKISDFGLSRDVYEEDSYVKRSKGRIPV  193 (290)
T ss_pred             -------------------------------------------------CCcEEeccccccccccCccchhcccCCCCCc
Confidence                                                             456999999998653221     12224567


Q ss_pred             CccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccccc
Q 045988          328 QYRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH  406 (530)
Q Consensus       328 ~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  406 (530)
                      .|+|||.+.+..++.++|||||||++|+|++ |..||.+..       ...   +.......                  
T Consensus       194 ~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~-------~~~---~~~~~~~~------------------  245 (290)
T cd05045         194 KWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA-------PER---LFNLLKTG------------------  245 (290)
T ss_pred             cccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC-------HHH---HHHHHhCC------------------
Confidence            8999999988889999999999999999998 999996432       111   11111000                  


Q ss_pred             CccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                         .....+...+.++.+||.+||+.||.+||++.++++
T Consensus       246 -------------------~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~  281 (290)
T cd05045         246 -------------------YRMERPENCSEEMYNLMLTCWKQEPDKRPTFADISK  281 (290)
T ss_pred             -------------------CCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence                               001122345678999999999999999999999986

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.5e-36  Score=298.93  Aligned_cols=247  Identities=20%  Similarity=0.317  Sum_probs=193.8

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCC---CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ...+|.+.++||+|+||.||+|.+...   ...||||......  ...+.+.+|+.+++++      .||||+++++++.
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~   77 (270)
T cd05056           4 QREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQF------DHPHIVKLIGVIT   77 (270)
T ss_pred             chhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhC------CCCchhceeEEEc
Confidence            456899999999999999999987554   4579999876543  3356788899999999      7888999999886


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .     ...|+||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ |++||||||+|||++.        
T Consensus        78 ~-----~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~-~~~H~dl~p~nili~~--------  142 (270)
T cd05056          78 E-----NPVWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLESK-RFVHRDIAARNVLVSS--------  142 (270)
T ss_pred             C-----CCcEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccccChheEEEec--------
Confidence            3     3578999999 889999986433 3489999999999999999999996 9999999999999955        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (270)
T cd05056         143 --------------------------------------------------------------------------------  142 (270)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                  ...++|+|||++......    .+...++..|+|||.+.+..++.++|||||
T Consensus       143 ----------------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  194 (270)
T cd05056         143 ----------------------------PDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMF  194 (270)
T ss_pred             ----------------------------CCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHH
Confidence                                        456999999998654322    112234567999999988889999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          350 ACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       350 G~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      ||++|+|++ |..||.+.+      ....+..+..  +                                       ...
T Consensus       195 G~il~el~~~g~~pf~~~~------~~~~~~~~~~--~---------------------------------------~~~  227 (270)
T cd05056         195 GVCMWEILMLGVKPFQGVK------NNDVIGRIEN--G---------------------------------------ERL  227 (270)
T ss_pred             HHHHHHHHHcCCCCCCCCC------HHHHHHHHHc--C---------------------------------------CcC
Confidence            999999986 999996543      1111111100  0                                       011


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..+...+..+.+||.+||..+|.+|||+.+++..
T Consensus       228 ~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~  261 (270)
T cd05056         228 PMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQ  261 (270)
T ss_pred             CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            1233456789999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=5e-39  Score=295.32  Aligned_cols=264  Identities=23%  Similarity=0.299  Sum_probs=207.6

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ...+.+-+..||.|+||+|++-.++.+|+..|+|.+.....  ...+++.|.....+-.     +.||||++|+....  
T Consensus        62 ~~~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~-----~cp~IVkfyGa~F~--  134 (361)
T KOG1006|consen   62 TSDNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSS-----NCPNIVKFYGALFS--  134 (361)
T ss_pred             ccchHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhc-----CCcHHHHHhhhhhc--
Confidence            34556667899999999999999999999999998876543  3345667777665543     78999999999884  


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYA---DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~---~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                        +...||.||+|..+|..+++..   ....+++..+-.|....+.||.||-.++.||||||||+||||+.         
T Consensus       135 --EGdcWiCMELMd~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr---------  203 (361)
T KOG1006|consen  135 --EGDCWICMELMDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDR---------  203 (361)
T ss_pred             --CCceeeeHHHHhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEec---------
Confidence              4579999999988887766542   33459999999999999999999998889999999999999976         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (361)
T KOG1006|consen  204 --------------------------------------------------------------------------------  203 (361)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcC--CCCCCcchhHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLG--SKYSTPADLWSFA  350 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~--~~~~~~~DiWSlG  350 (530)
                                                 .+.+||||||++-....+  .+..+|...|||||.+..  ..|+-++|+||||
T Consensus       204 ---------------------------~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLG  256 (361)
T KOG1006|consen  204 ---------------------------HGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLG  256 (361)
T ss_pred             ---------------------------CCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhc
Confidence                                       578999999999765443  455689999999999974  4599999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      ++|||+.||.+|+.+..     ...+++..+  +.|.+|. +...                                 .-
T Consensus       257 ITL~EvAtG~fPyr~w~-----svfeql~~V--v~gdpp~-l~~~---------------------------------~~  295 (361)
T KOG1006|consen  257 ITLYEVATGNFPYRKWD-----SVFEQLCQV--VIGDPPI-LLFD---------------------------------KE  295 (361)
T ss_pred             ceEeeeecCCCCcchHH-----HHHHHHHHH--HcCCCCe-ecCc---------------------------------cc
Confidence            99999999999996543     122333322  2233322 1100                                 00


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .-..+..+..||.-||..|-..||.-.+++++||+....
T Consensus       296 ~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~~fyr~y~  334 (361)
T KOG1006|consen  296 CVHYSFSMVRFINTCLIKDRSDRPKYDDLKKFPFYRMYA  334 (361)
T ss_pred             ccccCHHHHHHHHHHhhcccccCcchhhhhcCchhhhhh
Confidence            012467899999999999999999999999999998653

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=8.7e-37  Score=298.18  Aligned_cols=242  Identities=21%  Similarity=0.277  Sum_probs=185.4

Q ss_pred             EEeccccceEEEEEEeCCCC----------eEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           48 SKLGWGHFSTVWLAWDTQTS----------HYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~----------~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      +.||+|+||.||+|.+..++          ..+++|++.........+.+|+.+++.+      .||||+++++++..  
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~--   72 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQL------SHKHLVKLYGVCVR--   72 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcC------CCcchhheeeEEec--
Confidence            47999999999999988776          4688898776554467788899999988      78889999998874  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                         ...++||||+ +++|.+++..... .++...+..++.||+.||+|||++ ||+||||||+|||++......      
T Consensus        73 ---~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dlkp~Nill~~~~~~~------  141 (259)
T cd05037          73 ---DENIMVEEYVKFGPLDVFLHREKN-NVSLHWKLDVAKQLASALHYLEDK-KLVHGNVCGKNILVARYGLNE------  141 (259)
T ss_pred             ---CCcEEEEEcCCCCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHhhC-CeecccCccceEEEecCcccc------
Confidence               4579999999 8899998875432 589999999999999999999997 999999999999996521000      


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (259)
T cd05037         142 --------------------------------------------------------------------------------  141 (259)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCC--CCCCcchhHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGS--KYSTPADLWSFACICF  354 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~--~~~~~~DiWSlG~il~  354 (530)
                                             .....++|+|||++..... .....++..|+|||++.+.  .++.++|||||||++|
T Consensus       142 -----------------------~~~~~~kl~Dfg~a~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~  197 (259)
T cd05037         142 -----------------------GYVPFIKLSDPGIPITVLS-REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLL  197 (259)
T ss_pred             -----------------------CCceeEEeCCCCccccccc-ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHH
Confidence                                   0023589999999875433 2344677889999999876  6899999999999999


Q ss_pred             HHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +|++ |..||......      ... .....                                          ....+..
T Consensus       198 ~l~~~~~~p~~~~~~~------~~~-~~~~~------------------------------------------~~~~~~~  228 (259)
T cd05037         198 EICSNGEEPLSTLSSS------EKE-RFYQD------------------------------------------QHRLPMP  228 (259)
T ss_pred             HHHhCCCCCcccCCch------hHH-HHHhc------------------------------------------CCCCCCC
Confidence            9999 57788543210      000 00000                                          0001111


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ....+.+||.+||..||.+|||+.++++
T Consensus       229 ~~~~~~~li~~~l~~~p~~Rpt~~~il~  256 (259)
T cd05037         229 DCAELANLINQCWTYDPTKRPSFRAILR  256 (259)
T ss_pred             CchHHHHHHHHHhccChhhCCCHHHHHH
Confidence            1267899999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=7.9e-37  Score=301.59  Aligned_cols=249  Identities=22%  Similarity=0.398  Sum_probs=195.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ..+|++++.||+|+||.||+|+.+.     +.+.||+|.+.....  ....+.+|+++++++      .|+||+++++++
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~   77 (275)
T cd05046           4 RSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKL------SHKNVVRLLGLC   77 (275)
T ss_pred             hHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhc------CCcceeeeEEEE
Confidence            4689999999999999999998654     357899998765433  245688999999999      688899999998


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccC-------CCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYR-------GVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~-------~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      .    .....|+||||+ +++|.+++......       .+++..+..++.||+.||+|||++ ||+||||||+|||++.
T Consensus        78 ~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~-~i~H~dlkp~Nili~~  152 (275)
T cd05046          78 R----EAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA-RFVHRDLAARNCLVSS  152 (275)
T ss_pred             C----CCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc-CcccCcCccceEEEeC
Confidence            7    446899999999 78999998754411       489999999999999999999997 9999999999999965


Q ss_pred             ccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q 045988          186 MIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVED  265 (530)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (275)
T cd05046         153 --------------------------------------------------------------------------------  152 (275)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCCCC
Q 045988          266 QQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                          +..++|+|||++.....    ......++..|+|||.+.+..++
T Consensus       153 ------------------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  196 (275)
T cd05046         153 ------------------------------------QREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFS  196 (275)
T ss_pred             ------------------------------------CCcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCC
Confidence                                                45689999998864321    12334567789999999888889


Q ss_pred             CcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 TPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 ~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      .++|||||||++|+|++ |..||....      ....+..+..  +..                                
T Consensus       197 ~~~Di~slG~~l~~l~~~~~~p~~~~~------~~~~~~~~~~--~~~--------------------------------  236 (275)
T cd05046         197 TKSDVWSFGVLMWEVFTQGELPFYGLS------DEEVLNRLQA--GKL--------------------------------  236 (275)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCccccc------hHHHHHHHHc--CCc--------------------------------
Confidence            99999999999999998 888995322      1111111100  000                                


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                            .+..+...+..+.++|.+||..||.+||++.|++++
T Consensus       237 ------~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~  272 (275)
T cd05046         237 ------ELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSA  272 (275)
T ss_pred             ------CCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHH
Confidence                  011123456789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=100.00  E-value=5.3e-38  Score=306.50  Aligned_cols=333  Identities=25%  Similarity=0.361  Sum_probs=217.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCC---CCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQ---TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~---~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ...|.++.+||+|+|++||+|.+..   ..+.||||.+..... ...+.+|+++|..+.     .+.||+++.+.+.   
T Consensus        35 ~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~-p~ri~~El~~L~~~g-----G~~ni~~~~~~~r---  105 (418)
T KOG1167|consen   35 SNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS-PSRILNELEMLYRLG-----GSDNIIKLNGCFR---  105 (418)
T ss_pred             hhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC-chHHHHHHHHHHHhc-----cchhhhcchhhhc---
Confidence            5689999999999999999999887   789999998877654 567889999999996     6788999999998   


Q ss_pred             CCCcEEEEEEeccCc-CHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~-~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .++.+++||||++. ...+++.     .++..+++.+++.|+.||+++|.+ |||||||||.|||+...          
T Consensus       106 -nnd~v~ivlp~~~H~~f~~l~~-----~l~~~~i~~Yl~~ll~Al~~~h~~-GIvHRDiKpsNFL~n~~----------  168 (418)
T KOG1167|consen  106 -NNDQVAIVLPYFEHDRFRDLYR-----SLSLAEIRWYLRNLLKALAHLHKN-GIVHRDIKPSNFLYNRR----------  168 (418)
T ss_pred             -cCCeeEEEecccCccCHHHHHh-----cCCHHHHHHHHHHHHHHhhhhhcc-CccccCCCccccccccc----------
Confidence             67899999999954 5555543     377899999999999999999997 99999999999998552          


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                               .+.-.+.+++++..-...  +..+.+.....         .   .                         .
T Consensus       169 ---------t~rg~LvDFgLA~~~d~~--~~~~~s~~~~~---------~---~-------------------------~  200 (418)
T KOG1167|consen  169 ---------TQRGVLVDFGLAQRYDGY--QQTEHSRSYSG---------R---H-------------------------A  200 (418)
T ss_pred             ---------cCCceEEechhHHHHHhh--hhhhhhhhhhc---------c---c-------------------------C
Confidence                     223333444443320000  00000000000         0   0                         0


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEec-CCccc--c--cccccCCCCCCCCccCChhhcCCC-CCCcchhHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVD-FGNAC--W--TYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA  350 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~D-fG~a~--~--~~~~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG  350 (530)
                      ....+..-.|.+.               +.... -|..+  .  ........+||++|+|||++...+ .++++||||.|
T Consensus       201 ~~~~g~~~~~~~~---------------~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~G  265 (418)
T KOG1167|consen  201 TPAMGKDVHCQSV---------------ATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAG  265 (418)
T ss_pred             CccccCccccccc---------------ccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeecc
Confidence            0001111111000               00000 01111  1  113356678999999999998766 68999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhh-h-cCCCcccccccc-----cCc-cccchhcc---cCC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKI-A-FGGRYSRDFFNR-----HGD-LRHIRRLR---FWP  419 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~-~-~~~~~~~~~~~~-----~~~-~~~~~~~~---~~~  419 (530)
                      ||+..++++.+||-..     .++.+.++.+..++|...-.- + ..++  .-.|.+     .+. ......+.   ..+
T Consensus       266 VI~Lslls~~~PFf~a-----~dd~~al~ei~tifG~~~mrk~A~l~g~--~~l~~ksn~~~~~e~~~~f~s~~~~~~~~  338 (418)
T KOG1167|consen  266 VILLSLLSRRYPFFKA-----KDDADALAEIATIFGSAEMRKCAALPGR--ILLWQKSNIPTIPELRVNFETLHIESIYK  338 (418)
T ss_pred             ceeehhhccccccccC-----ccccchHHHHHHHhChHHHHHHhhcCCc--eeeeccccccccHHHHhchhccChhhccc
Confidence            9999999999999533     347888999999999654321 1 1111  111111     000 00011110   000


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ..+............+..+.|||.+||..||.+|+||+++|+||||....
T Consensus       339 ~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkHpFF~~~~  388 (418)
T KOG1167|consen  339 SRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKHPFFDEAD  388 (418)
T ss_pred             ccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcCcCCcchh
Confidence            00000111122333455889999999999999999999999999999543

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=1.5e-36  Score=298.52  Aligned_cols=246  Identities=18%  Similarity=0.275  Sum_probs=192.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCe---EEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSH---YVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~---~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .++|+..+.||+|+||.||+|.+..++.   .+|+|.+....  .....+..|+++++++      .|+||+++++++. 
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~-   76 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQF------SHHNIIRLEGVVT-   76 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcC------CCCCeeEEEEEEc-
Confidence            4689999999999999999999876654   79999886542  2345678899999888      7888999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .....++||||+ +++|..++... ...+++..+..++.|++.||+|||++ ||+||||||+|||++.         
T Consensus        77 ---~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~dlkp~Nili~~---------  142 (268)
T cd05063          77 ---KFKPAMIITEYMENGALDKYLRDH-DGEFSSYQLVGMLRGIAAGMKYLSDM-NYVHRDLAARNILVNS---------  142 (268)
T ss_pred             ---cCCCcEEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccchhhEEEcC---------
Confidence               446799999999 78998888643 24589999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (268)
T cd05063         143 --------------------------------------------------------------------------------  142 (268)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc----C--CCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF----T--NDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~----~--~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 +..++|+|||++.......    .  ....+..|+|||++.+..++.++||||
T Consensus       143 ---------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~s  195 (268)
T cd05063         143 ---------------------------NLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWS  195 (268)
T ss_pred             ---------------------------CCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHH
Confidence                                       4568999999986432211    1  112245799999998888999999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          349 FACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       349 lG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||++|+|++ |..||...+      .......+... .                                        .
T Consensus       196 lG~il~ell~~g~~p~~~~~------~~~~~~~i~~~-~----------------------------------------~  228 (268)
T cd05063         196 FGIVMWEVMSFGERPYWDMS------NHEVMKAINDG-F----------------------------------------R  228 (268)
T ss_pred             HHHHHHHHHhCCCCCCCcCC------HHHHHHHHhcC-C----------------------------------------C
Confidence            9999999997 999995432      12222222110 0                                        0


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ...+...+..+.+|+.+||..||.+||++.++++
T Consensus       229 ~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~  262 (268)
T cd05063         229 LPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVN  262 (268)
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            0112234578899999999999999999999986

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1e-36  Score=299.04  Aligned_cols=244  Identities=17%  Similarity=0.230  Sum_probs=180.4

Q ss_pred             EEeccccceEEEEEEeCC------------CCeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           48 SKLGWGHFSTVWLAWDTQ------------TSHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~------------~~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +.||+|+||.||+|....            ....||+|++..... ....+..|+.++..+      .||||+++++++.
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l------~hp~iv~~~~~~~   74 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQV------SHKHIVLLYGVCV   74 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhC------CCCCEeeEEEEEe
Confidence            468999999999997432            234689998765432 234567788888888      7889999999988


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .    ....++||||+ +++|..++.. ....+++..+..++.||+.||+|||++ ||+||||||+|||+.......   
T Consensus        75 ~----~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~Nill~~~~~~~---  145 (262)
T cd05077          75 R----DVENIMVEEFVEFGPLDLFMHR-KSDVLTTPWKFKVAKQLASALSYLEDK-DLVHGNVCTKNILLAREGIDG---  145 (262)
T ss_pred             c----CCCCEEEEecccCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHhhhC-CeECCCCCcccEEEecCCccC---
Confidence            3    46789999999 6777776653 234589999999999999999999997 999999999999995421000   


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (262)
T cd05077         146 --------------------------------------------------------------------------------  145 (262)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhc-CCCCCCcchhHHHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLL-GSKYSTPADLWSFACI  352 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~~DiWSlG~i  352 (530)
                                                .....++++|||.+.... ......++..|+|||++. +..++.++|||||||+
T Consensus       146 --------------------------~~~~~~~l~d~g~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~  198 (262)
T cd05077         146 --------------------------ECGPFIKLSDPGIPITVL-SRQECVERIPWIAPECVEDSKNLSIAADKWSFGTT  198 (262)
T ss_pred             --------------------------CCCceeEeCCCCCCcccc-CcccccccccccChhhhcCCCCCCchhHHHHHHHH
Confidence                                      002358999999986432 223456888999999987 4568999999999999


Q ss_pred             HHHHH-hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          353 CFELA-TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       353 l~ell-tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      +|+|+ .|..||.....       .....+.   .                                       ......
T Consensus       199 l~el~~~~~~p~~~~~~-------~~~~~~~---~---------------------------------------~~~~~~  229 (262)
T cd05077         199 LWEICYNGEIPLKDKTL-------AEKERFY---E---------------------------------------GQCMLV  229 (262)
T ss_pred             HHHHHhCCCCCCCCcch-------hHHHHHH---h---------------------------------------cCccCC
Confidence            99997 58888853220       0010000   0                                       000111


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ...+.++.+||.+||+.||.+||++.+||.+
T Consensus       230 ~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~  260 (262)
T cd05077         230 TPSCKELADLMTHCMNYDPNQRPFFRAIMRD  260 (262)
T ss_pred             CCChHHHHHHHHHHcCCChhhCcCHHHHHHh
Confidence            2234678999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-36  Score=299.53  Aligned_cols=241  Identities=20%  Similarity=0.280  Sum_probs=185.9

Q ss_pred             EEeccccceEEEEEEeCCCCe--EEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSH--YVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~--~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||.||+|.+..++.  .+|+|.++..  ......+.+|+.++.++.     .||||+++++++..    ....
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~~~~~----~~~~   71 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HHPNIINLLGACEH----RGYL   71 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhc-----cCCCeeeEEEEEec----CCCc
Confidence            368999999999999888775  5688887743  233456788999999985     68899999999984    4678


Q ss_pred             EEEEecc-CcCHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccC
Q 045988          124 CMVFEYL-GENLLTLIKYAD--------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID  188 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~--------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~  188 (530)
                      ++||||+ +++|.+++....              ...+++..+..++.||+.||+|||++ ||+||||||+|||++.   
T Consensus        72 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~-~i~H~dikp~nili~~---  147 (270)
T cd05047          72 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARNILVGE---  147 (270)
T ss_pred             eEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccccceEEEcC---
Confidence            9999999 889999986432              12378999999999999999999997 9999999999999954   


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (270)
T cd05047         148 --------------------------------------------------------------------------------  147 (270)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                       +..++|+|||++......  ......+..|+|||++....++.++||
T Consensus       148 ---------------------------------~~~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di  194 (270)
T cd05047         148 ---------------------------------NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDV  194 (270)
T ss_pred             ---------------------------------CCeEEECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhH
Confidence                                             457999999998532211  111223567999999988889999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          347 WSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       347 WSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      |||||++|+|++ |..||...+      .......+.   ..                                      
T Consensus       195 ~slG~il~el~~~g~~pf~~~~------~~~~~~~~~---~~--------------------------------------  227 (270)
T cd05047         195 WSYGVLLWEIVSLGGTPYCGMT------CAELYEKLP---QG--------------------------------------  227 (270)
T ss_pred             HHHHHHHHHHHcCCCCCccccC------HHHHHHHHh---CC--------------------------------------
Confidence            999999999997 999995432      111111110   00                                      


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .....+...+.++.+|+.+||..||.+|||+.+++.
T Consensus       228 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (270)
T cd05047         228 YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  263 (270)
T ss_pred             CCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHH
Confidence            000112234567899999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.9e-37  Score=303.31  Aligned_cols=245  Identities=20%  Similarity=0.300  Sum_probs=183.9

Q ss_pred             EEeccccceEEEEEEeCCCCe-------EEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           48 SKLGWGHFSTVWLAWDTQTSH-------YVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~-------~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +.||+|+||.||+|.+...+.       .||+|++.... ...+.+..|+.+++.+      .||||+++++++..    
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~------~h~~iv~~~~~~~~----   70 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQL------SHKHLVLNYGVCVC----   70 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhC------CCCChhheeeEEEe----
Confidence            469999999999998865543       48888876543 2345677888888888      78899999999984    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      +...++||||+ +++|..++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.......       
T Consensus        71 ~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~iiH~dlkp~nili~~~~~~~~-------  141 (258)
T cd05078          71 GDESIMVQEYVKFGSLDTYLKKNK-NLINISWKLEVAKQLAWALHFLEDK-GLTHGNVCAKNVLLIREEDRKT-------  141 (258)
T ss_pred             CCCcEEEEecCCCCcHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCccceEEEeccccccc-------
Confidence            46789999999 889999886433 3489999999999999999999997 9999999999999965210000       


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (258)
T cd05078         142 --------------------------------------------------------------------------------  141 (258)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELA  357 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~ell  357 (530)
                                           .....++++|||.+..... .....++..|+|||++.+. .++.++|||||||++|+|+
T Consensus       142 ---------------------~~~~~~~l~d~g~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~  199 (258)
T cd05078         142 ---------------------GNPPFIKLSDPGISITVLP-KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIF  199 (258)
T ss_pred             ---------------------CCCceEEecccccccccCC-chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHH
Confidence                                 0023589999999865432 2335678899999999864 5899999999999999999


Q ss_pred             hCC-CCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          358 TGD-VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       358 tG~-~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      +|. +||....      ..... .   ..                                       .....++...+.
T Consensus       200 ~g~~~~~~~~~------~~~~~-~---~~---------------------------------------~~~~~~~~~~~~  230 (258)
T cd05078         200 SGGDKPLSALD------SQKKL-Q---FY---------------------------------------EDRHQLPAPKWT  230 (258)
T ss_pred             cCCCCChhhcc------HHHHH-H---HH---------------------------------------HccccCCCCCcH
Confidence            994 6664221      00000 0   00                                       001122333456


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ++.+||.+||+.||++|||++++++.
T Consensus       231 ~~~~li~~~l~~~p~~Rps~~~il~~  256 (258)
T cd05078         231 ELANLINQCMDYEPDFRPSFRAIIRD  256 (258)
T ss_pred             HHHHHHHHHhccChhhCCCHHHHHHh
Confidence            78999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=1.4e-36  Score=298.81  Aligned_cols=246  Identities=20%  Similarity=0.302  Sum_probs=192.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCC---eEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTS---HYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~---~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .++|++.+.||+|+||.||+|.+..++   ..||+|.++...  .....+.+|+.+++++      .||||+++++++. 
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~-   75 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQF------DHPNIIHLEGVVT-   75 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhC------CCCCcceEEEEEe-
Confidence            468999999999999999999886544   479999876532  2345678899999988      7889999999987 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .+...|+||||+ +++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+|||++.         
T Consensus        76 ---~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~-~i~h~dlkp~nili~~---------  141 (267)
T cd05066          76 ---KSKPVMIVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSDM-GYVHRDLAARNILVNS---------  141 (267)
T ss_pred             ---cCCccEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEeehhhchhcEEECC---------
Confidence               446899999999 789999886432 3489999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (267)
T cd05066         142 --------------------------------------------------------------------------------  141 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc------CCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF------TNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 +..++|+|||.+.......      ....++..|+|||.+.+..++.++|+||
T Consensus       142 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~s  194 (267)
T cd05066         142 ---------------------------NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWS  194 (267)
T ss_pred             ---------------------------CCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHH
Confidence                                       4569999999986533211      1122356799999999888999999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          349 FACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       349 lG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||++|++++ |..||....      ..+....+....                                         .
T Consensus       195 lG~~l~ell~~g~~p~~~~~------~~~~~~~~~~~~-----------------------------------------~  227 (267)
T cd05066         195 YGIVMWEVMSYGERPYWEMS------NQDVIKAIEEGY-----------------------------------------R  227 (267)
T ss_pred             HHHHHHHHhcCCCCCcccCC------HHHHHHHHhCCC-----------------------------------------c
Confidence            9999999886 999995432      111111111000                                         0


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ...+...+..+.+|+.+||+.+|.+||++.++++
T Consensus       228 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  261 (267)
T cd05066         228 LPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVS  261 (267)
T ss_pred             CCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHH
Confidence            0112234678899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=309.01  Aligned_cols=263  Identities=27%  Similarity=0.355  Sum_probs=197.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccc-hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY-TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~-~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ++|.-..+||+|+||.||+|... +|..||||.+...... ...+.+|+.+|.++      .|||+|++++++.+.    
T Consensus        75 ~~Fs~~~~ig~Ggfg~VYkG~l~-~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l------~H~Nlv~LlGyC~e~----  143 (361)
T KOG1187|consen   75 NNFSESNLIGEGGFGTVYKGVLS-DGTVVAVKRLSSNSGQGEREFLNEVEILSRL------RHPNLVKLLGYCLEG----  143 (361)
T ss_pred             hCCchhcceecCCCeEEEEEEEC-CCCEEEEEEecCCCCcchhHHHHHHHHHhcC------CCcCcccEEEEEecC----
Confidence            67888899999999999999854 4489999987776553 55699999999999      788899999999953    


Q ss_pred             c-EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--ceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          121 Q-HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELS--IIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       121 ~-~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~g--IvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      . ..+||+||| .|+|.+.+.......+++.....|+.+++.||+|||..+.  |||||||++||||+.           
T Consensus       144 ~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~-----------  212 (361)
T KOG1187|consen  144 GEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDE-----------  212 (361)
T ss_pred             CceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECC-----------
Confidence            4 699999999 8899998865332268999999999999999999998654  999999999999976           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (361)
T KOG1187|consen  213 --------------------------------------------------------------------------------  212 (361)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccC--CC-CCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFT--ND-IQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~--~~-~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                               +++.||+|||+|+.... ...  .. .||.+|+|||.+.....+.++|||||||+
T Consensus       213 -------------------------~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVv  267 (361)
T KOG1187|consen  213 -------------------------DFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVV  267 (361)
T ss_pred             -------------------------CCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHH
Confidence                                     67899999999976543 221  12 79999999999988889999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |.||++|+.+.+.........   ........+...                   .+..+....       +.. ..++.
T Consensus       268 llElitgr~~~d~~~~~~~~~---l~~w~~~~~~~~-------------------~~~eiiD~~-------l~~-~~~~~  317 (361)
T KOG1187|consen  268 LLELITGRKAVDQSRPRGELS---LVEWAKPLLEEG-------------------KLREIVDPR-------LKE-GEYPD  317 (361)
T ss_pred             HHHHHhCCcccCCCCCccccc---HHHHHHHHHHCc-------------------chhheeCCC-------ccC-CCCCh
Confidence            999999998886543221111   111111111100                   000000000       000 01111


Q ss_pred             -hcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          433 -KDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       433 -~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                       ..-..+..+..+|++.+|.+||++.|+++
T Consensus       318 ~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~  347 (361)
T KOG1187|consen  318 EKEVKKLAELALRCLRPDPKERPTMSQVVK  347 (361)
T ss_pred             HHHHHHHHHHHHHHcCcCCCcCcCHHHHHH
Confidence             23345778999999999999999999754

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=6.8e-37  Score=299.87  Aligned_cols=243  Identities=27%  Similarity=0.419  Sum_probs=187.5

Q ss_pred             EEEEEeccccceEEEEEEeC----CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           45 VVQSKLGWGHFSTVWLAWDT----QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        45 ~i~~~LG~G~fg~Vy~a~~~----~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .+.+.||.|+||.||+|...    ..+..|+||+++...  ...+.+.+|+++++++      +||||+++++++..   
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~g~~~~---   72 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKL------RHPNIVKLYGFCIE---   72 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTH------SBTTBE-EEEEEES---
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccc------cccccccccccccc---
Confidence            57899999999999999887    346899999996532  2357888999999999      78889999999993   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ....++||||| +++|.+++.......++...+..|+.||+.||.|||++ +|+|+||+++|||++.            
T Consensus        73 -~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-~iiH~~l~~~nill~~------------  138 (259)
T PF07714_consen   73 -NEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN-NIIHGNLSPSNILLDS------------  138 (259)
T ss_dssp             -SSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT-TEEEST-SGGGEEEET------------
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc------------
Confidence             35599999999 78999999876445699999999999999999999997 9999999999999966            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (259)
T PF07714_consen  139 --------------------------------------------------------------------------------  138 (259)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                              ++.+||+|||++.....     ......+...|+|||.+.+..++.++||||||++
T Consensus       139 ------------------------~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~  194 (259)
T PF07714_consen  139 ------------------------NGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGML  194 (259)
T ss_dssp             ------------------------TTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHH
T ss_pred             ------------------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                    46799999999976521     1233346778999999988889999999999999


Q ss_pred             HHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          353 CFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       353 l~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      +|||++ |..||....      ..+....+..  +                                       .....+
T Consensus       195 l~ei~~~~~~p~~~~~------~~~~~~~~~~--~---------------------------------------~~~~~~  227 (259)
T PF07714_consen  195 LYEILTLGKFPFSDYD------NEEIIEKLKQ--G---------------------------------------QRLPIP  227 (259)
T ss_dssp             HHHHHTTSSGTTTTSC------HHHHHHHHHT--T---------------------------------------EETTSB
T ss_pred             cccccccccccccccc------cccccccccc--c---------------------------------------ccceec
Confidence            999999 789985322      1111111100  0                                       011223


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ...+..+.+||.+||..||.+|||+.++++
T Consensus       228 ~~~~~~~~~li~~C~~~~p~~RPs~~~i~~  257 (259)
T PF07714_consen  228 DNCPKDIYSLIQQCWSHDPEKRPSFQEILQ  257 (259)
T ss_dssp             TTSBHHHHHHHHHHT-SSGGGS--HHHHHH
T ss_pred             cchhHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence            345778999999999999999999999975

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-37  Score=314.54  Aligned_cols=246  Identities=25%  Similarity=0.414  Sum_probs=192.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+...+...||+|+||+||+|++-.   .||||+++..   +...+.|.+|+.++++-      .|-||+-+.+++..+ 
T Consensus       391 ~~ev~l~~rIGsGsFGtV~Rg~whG---dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkT------RH~NIlLFMG~~~~p-  460 (678)
T KOG0193|consen  391 PEEVLLGERIGSGSFGTVYRGRWHG---DVAVKLLNVDDPTPEQLQAFKNEVAVLKKT------RHENILLFMGACMNP-  460 (678)
T ss_pred             HHHhhccceeccccccceeeccccc---ceEEEEEecCCCCHHHHHHHHHHHHHHhhc------chhhheeeehhhcCC-
Confidence            4566789999999999999997643   4999998765   34567789999999999      556699999999853 


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                          .+.||..+| |.+|+.++.... ..|.....+.|++||++|+.|||.+ +|||||||..||+|..           
T Consensus       461 ----~~AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHAK-~IIHrDLKSnNIFl~~-----------  523 (678)
T KOG0193|consen  461 ----PLAIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHAK-NIIHRDLKSNNIFLHE-----------  523 (678)
T ss_pred             ----ceeeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhhh-hhhhhhccccceEEcc-----------
Confidence                349999999 889999886544 4488999999999999999999998 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       524 --------------------------------------------------------------------------------  523 (678)
T KOG0193|consen  524 --------------------------------------------------------------------------------  523 (678)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-----cccCCCCCCCCccCChhhcC---CCCCCcchhHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-----KQFTNDIQTRQYRCPEVLLG---SKYSTPADLWS  348 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-----~~~~~~~gt~~y~aPE~l~~---~~~~~~~DiWS  348 (530)
                                               +++|||+|||++....     ......-|...|||||++..   .+|++.+||||
T Consensus       524 -------------------------~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYa  578 (678)
T KOG0193|consen  524 -------------------------DLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYA  578 (678)
T ss_pred             -------------------------CCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhh
Confidence                                     5789999999996432     22344457888999999963   57999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|||++|.+||.....++       +--|+             ++         |-+           .+   ...
T Consensus       579 FGiV~YELltg~lPysi~~~dq-------IifmV-------------Gr---------G~l-----------~p---d~s  615 (678)
T KOG0193|consen  579 FGIVWYELLTGELPYSIQNRDQ-------IIFMV-------------GR---------GYL-----------MP---DLS  615 (678)
T ss_pred             hhHHHHHHHhCcCCcCCCChhh-------eEEEe-------------cc---------ccc-----------Cc---cch
Confidence            9999999999999996332211       10000             00         000           00   001


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ......+.++++|+..||.+++++||...+||.
T Consensus       616 ~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~  648 (678)
T KOG0193|consen  616 KIRSNCPKAMKRLLSDCWKFDREERPLFPQLLS  648 (678)
T ss_pred             hhhccCHHHHHHHHHHHHhcCcccCccHHHHHH
Confidence            122355679999999999999999999999987

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=2.4e-36  Score=295.51  Aligned_cols=237  Identities=21%  Similarity=0.338  Sum_probs=184.2

Q ss_pred             EeccccceEEEEEEeC--CCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEE
Q 045988           49 KLGWGHFSTVWLAWDT--QTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVC  124 (530)
Q Consensus        49 ~LG~G~fg~Vy~a~~~--~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~  124 (530)
                      .||+|+||.||+|...  .++..||+|++.....  ..+.+.+|+.+++++      .|+||+++++++..     ...+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l------~h~~ii~~~~~~~~-----~~~~   70 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQL------DNPYIVRMIGVCEA-----EALM   70 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhc------CCCCeEEEEEEEcC-----CCeE
Confidence            4899999999999765  4467899998876432  235678999999998      78889999998752     4689


Q ss_pred             EEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccc
Q 045988          125 MVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLL  203 (530)
Q Consensus       125 lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~  203 (530)
                      +||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.                  
T Consensus        71 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nil~~~------------------  130 (257)
T cd05115          71 LVMEMASGGPLNKFLSGK-KDEITVSNVVELMHQVSMGMKYLEGK-NFVHRDLAARNVLLVN------------------  130 (257)
T ss_pred             EEEEeCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhc-CeeecccchheEEEcC------------------
Confidence            999999 88999888642 34589999999999999999999997 9999999999999954                  


Q ss_pred             cccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccccc
Q 045988          204 TKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGIN  283 (530)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (530)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (257)
T cd05115         131 --------------------------------------------------------------------------------  130 (257)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          284 KDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                        +..++|+|||++......      .....++..|+|||++.+..++.++|||||||++|+|+
T Consensus       131 ------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  192 (257)
T cd05115         131 ------------------QHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAF  192 (257)
T ss_pred             ------------------CCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHh
Confidence                              456899999998643211      11122356899999998888999999999999999999


Q ss_pred             h-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          358 T-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       358 t-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      + |..||....      .......+. . |                                       .....+...++
T Consensus       193 ~~g~~p~~~~~------~~~~~~~~~-~-~---------------------------------------~~~~~~~~~~~  225 (257)
T cd05115         193 SYGQKPYKKMK------GPEVMSFIE-Q-G---------------------------------------KRLDCPAECPP  225 (257)
T ss_pred             cCCCCCcCcCC------HHHHHHHHH-C-C---------------------------------------CCCCCCCCCCH
Confidence            6 999996432      111111110 0 0                                       01123344568


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ++.+||.+||..||++||++.++++
T Consensus       226 ~l~~li~~c~~~~~~~Rp~~~~i~~  250 (257)
T cd05115         226 EMYALMKDCWIYKWEDRPNFAKVEE  250 (257)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHH
Confidence            8999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=2.8e-36  Score=294.50  Aligned_cols=240  Identities=25%  Similarity=0.301  Sum_probs=189.8

Q ss_pred             EEeccccceEEEEEEeCC-CC--eEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           48 SKLGWGHFSTVWLAWDTQ-TS--HYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~-~~--~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      ++||+|+||.||+|.+.. .+  ..||||.+.....  ....+.+|+.+++++      .|+||+++++.+.    . ..
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~----~-~~   69 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSL------DHENLIRLYGVVL----T-HP   69 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhc------CCCCccceeEEEc----C-Ce
Confidence            468999999999998765 33  3699998876543  355778899999999      7888999999987    3 68


Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      .++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.                
T Consensus        70 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~di~p~nil~~~----------------  132 (257)
T cd05040          70 LMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESK-RFIHRDLAARNILLAS----------------  132 (257)
T ss_pred             EEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhC-CccccccCcccEEEec----------------
Confidence            99999999 89999998754434589999999999999999999997 9999999999999965                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (257)
T cd05040         133 --------------------------------------------------------------------------------  132 (257)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                          ++.++|+|||++......      .....++..|+|||.+.+..++.++|||||||++|+
T Consensus       133 --------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~e  192 (257)
T cd05040         133 --------------------DDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWE  192 (257)
T ss_pred             --------------------CCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHH
Confidence                                457999999998654321      123456788999999998889999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          356 LAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       356 llt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |++ |..||...+      ..+.+..+.. .+                                       .....+...
T Consensus       193 l~t~g~~p~~~~~------~~~~~~~~~~-~~---------------------------------------~~~~~~~~~  226 (257)
T cd05040         193 MFTYGEEPWAGLS------GSQILKKIDK-EG---------------------------------------ERLERPEAC  226 (257)
T ss_pred             HHhCCCCCCCCCC------HHHHHHHHHh-cC---------------------------------------CcCCCCccC
Confidence            998 999995332      1111111110 00                                       001112234


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +..+.+|+.+||+.+|.+||++.++++
T Consensus       227 ~~~~~~li~~~l~~~p~~Rps~~~~~~  253 (257)
T cd05040         227 PQDIYNVMLQCWAHNPADRPTFAALRE  253 (257)
T ss_pred             CHHHHHHHHHHCCCCcccCCCHHHHHH
Confidence            678999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=2.6e-36  Score=298.78  Aligned_cols=249  Identities=18%  Similarity=0.305  Sum_probs=194.8

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCC----CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQ----TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~----~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ..++|++.+.||+|+||.||+|.+..    ++..||+|++....  .....+.+|+.+++++      .|+||+++++++
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~~~~   77 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGL------SHQNILPILHVC   77 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEE
Confidence            46789999999999999999999876    36889999877542  2345678899999998      788899999987


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADY------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      ...   +...++++||+ +++|.+++.....      ..+++..+..++.||+.||+|||++ +|+||||||+|||++. 
T Consensus        78 ~~~---~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-~i~H~di~p~nil~~~-  152 (280)
T cd05043          78 IED---GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR-GVIHKDIAARNCVIDE-  152 (280)
T ss_pred             ecC---CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccCHhhEEEcC-
Confidence            642   46789999999 7899999865432      3488999999999999999999997 9999999999999954 


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (280)
T cd05043         153 --------------------------------------------------------------------------------  152 (280)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCC
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                         +..++|+|||+++.....     .....++..|+|||++.+..++
T Consensus       153 -----------------------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~  197 (280)
T cd05043         153 -----------------------------------ELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYS  197 (280)
T ss_pred             -----------------------------------CCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCC
Confidence                                               456899999999643221     1223456789999999988899


Q ss_pred             CcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 TPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 ~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      .++|||||||++|++++ |.+||....      .......+.   ...                                
T Consensus       198 ~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~---~~~--------------------------------  236 (280)
T cd05043         198 SASDVWSFGVLLWELMTLGQTPYVEID------PFEMAAYLK---DGY--------------------------------  236 (280)
T ss_pred             chhhHHHhHHHHHHHhcCCCCCcCcCC------HHHHHHHHH---cCC--------------------------------
Confidence            99999999999999999 999995422      111111000   000                                


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                            .+..+...++++.+++.+||..||++|||+.++++
T Consensus       237 ------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  271 (280)
T cd05043         237 ------RLAQPINCPDELFAVMACCWALDPEERPSFSQLVQ  271 (280)
T ss_pred             ------CCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                  00111234578899999999999999999999985

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.6e-36  Score=299.68  Aligned_cols=243  Identities=20%  Similarity=0.292  Sum_probs=180.4

Q ss_pred             EeccccceEEEEEEeCCC------------------------CeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCC
Q 045988           49 KLGWGHFSTVWLAWDTQT------------------------SHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        49 ~LG~G~fg~Vy~a~~~~~------------------------~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h  103 (530)
                      .||+|+||.||+|....+                        ...||+|++..... ....+.+|+.+++.+      .|
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l------~h   75 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQV------SH   75 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcC------CC
Confidence            699999999999974221                        24689998865432 234567788888887      78


Q ss_pred             cceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEE
Q 045988          104 KCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NIL  182 (530)
                      |||+++++++.    .....++||||+ +++|..++.. ....+++..+..++.||+.||+|||++ ||+||||||+|||
T Consensus        76 ~niv~~~~~~~----~~~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~-~iiH~dlkp~Nil  149 (274)
T cd05076          76 IHLAFVHGVCV----RGSENIMVEEFVEHGPLDVCLRK-EKGRVPVAWKITVAQQLASALSYLEDK-NLVHGNVCAKNIL  149 (274)
T ss_pred             CCeeeEEEEEE----eCCceEEEEecCCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHcC-CccCCCCCcccEE
Confidence            89999999988    446889999999 7888777753 234589999999999999999999997 9999999999999


Q ss_pred             EeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 045988          183 LMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDS  262 (530)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (530)
                      ++......                                                                        
T Consensus       150 l~~~~~~~------------------------------------------------------------------------  157 (274)
T cd05076         150 LARLGLAE------------------------------------------------------------------------  157 (274)
T ss_pred             EeccCccc------------------------------------------------------------------------
Confidence            96521000                                                                        


Q ss_pred             cccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CCCC
Q 045988          263 VEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYS  341 (530)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~  341 (530)
                                                           .....++++|||.+..... .....++..|+|||.+.+ ..++
T Consensus       158 -------------------------------------~~~~~~kl~d~g~~~~~~~-~~~~~~~~~~~aPe~~~~~~~~~  199 (274)
T cd05076         158 -------------------------------------GTSPFIKLSDPGVSFTALS-REERVERIPWIAPECVPGGNSLS  199 (274)
T ss_pred             -------------------------------------CccceeeecCCcccccccc-ccccccCCcccCchhhcCCCCCC
Confidence                                                 0023489999998854322 233467889999999875 4589


Q ss_pred             CcchhHHHHHHHHHHH-hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 TPADLWSFACICFELA-TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 ~~~DiWSlG~il~ell-tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      .++|||||||++|+|+ +|..||......       .......                                     
T Consensus       200 ~~~Dv~slG~~l~el~~~g~~p~~~~~~~-------~~~~~~~-------------------------------------  235 (274)
T cd05076         200 TAADKWSFGTTLLEICFDGEVPLKERTPS-------EKERFYE-------------------------------------  235 (274)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCccccChH-------HHHHHHH-------------------------------------
Confidence            9999999999999984 799999643211       1111100                                     


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                           ....++....+.+.+||.+||+.+|.+|||+.++|++
T Consensus       236 -----~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         236 -----KKHRLPEPSCKELATLISQCLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             -----hccCCCCCCChHHHHHHHHHcccChhhCcCHHHHHHh
Confidence                 0011122234578999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=2.4e-36  Score=297.22  Aligned_cols=246  Identities=19%  Similarity=0.334  Sum_probs=191.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCe---EEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSH---YVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~---~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .+.|++.+.||+|+||.||+|.++.+++   .||||+++..  ......+..|+.+++++      .||||+++++++. 
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~~~~~-   75 (269)
T cd05065           3 VSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF------DHPNIIHLEGVVT-   75 (269)
T ss_pred             hHHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhC------CCcCcceEEEEEC-
Confidence            3579999999999999999999877654   6999998754  22345788899999998      7888999999987 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .+...++||||+ +++|.+++... ...++...+..++.|++.||.|||++ |++||||||+||+++.         
T Consensus        76 ---~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~l~~al~~lH~~-g~~H~dl~p~nili~~---------  141 (269)
T cd05065          76 ---KSRPVMIITEFMENGALDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLSEM-NYVHRDLAARNILVNS---------  141 (269)
T ss_pred             ---CCCceEEEEecCCCCcHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccChheEEEcC---------
Confidence               456899999999 77898888643 23489999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (269)
T cd05065         142 --------------------------------------------------------------------------------  141 (269)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCC---CCCCccCChhhcCCCCCCcchh
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDI---QTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~---gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                 +..++|+|||++......     .....   .+..|+|||.+.+..++.++||
T Consensus       142 ---------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv  194 (269)
T cd05065         142 ---------------------------NLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDV  194 (269)
T ss_pred             ---------------------------CCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhh
Confidence                                       456899999998653221     11111   2347999999998889999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          347 WSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       347 WSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      |||||++|||++ |..||...+      .......+.   ...                                     
T Consensus       195 wslG~~l~e~l~~g~~p~~~~~------~~~~~~~i~---~~~-------------------------------------  228 (269)
T cd05065         195 WSYGIVMWEVMSYGERPYWDMS------NQDVINAIE---QDY-------------------------------------  228 (269)
T ss_pred             hhhHHHHHHHhcCCCCCCCCCC------HHHHHHHHH---cCC-------------------------------------
Confidence            999999999886 999995432      111111110   000                                     


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                       ....+...+..+.+++.+||..+|.+||++.+++.
T Consensus       229 -~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  263 (269)
T cd05065         229 -RLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVS  263 (269)
T ss_pred             -cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence             01112344577899999999999999999999986

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.6e-36  Score=298.96  Aligned_cols=258  Identities=24%  Similarity=0.315  Sum_probs=196.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeC----CCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDT----QTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~----~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ...|++.+.||+|+||.||+|...    .+++.||+|++.....  ....+.+|+++++.+      .|+||+++++++.
T Consensus         3 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l------~~~~i~~~~~~~~   76 (284)
T cd05038           3 KRHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTL------DHENIVKYKGVCE   76 (284)
T ss_pred             hhhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhC------CCCChheEEeeee
Confidence            467899999999999999999854    3488999999886654  366788999999998      7888999999887


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      ..  .+...++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        77 ~~--~~~~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~aL~~lH~~-~i~H~dl~p~nil~~~--------  144 (284)
T cd05038          77 KP--GGRSLRLIMEYLPSGSLRDYLQRHR-DQINLKRLLLFSSQICKGMDYLGSQ-RYIHRDLAARNILVES--------  144 (284)
T ss_pred             cC--CCCceEEEEecCCCCCHHHHHHhCc-cccCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHhEEEcC--------
Confidence            53  356899999999 889999986433 2489999999999999999999997 9999999999999955        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (284)
T cd05038         145 --------------------------------------------------------------------------------  144 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc------CCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF------TNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                  +..++|+|||.+.......      ....++..|+|||.+.+..++.++|||
T Consensus       145 ----------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~  196 (284)
T cd05038         145 ----------------------------EDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVW  196 (284)
T ss_pred             ----------------------------CCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchH
Confidence                                        4569999999997643211      122345679999999888899999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCC-----CChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYD-----RDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~-----~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      ||||++|+|++|..||.........     ........+...+..                                   
T Consensus       197 slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  241 (284)
T cd05038         197 SFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKE-----------------------------------  241 (284)
T ss_pred             HHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHc-----------------------------------
Confidence            9999999999999998543211100     000000000000000                                   


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                        ......+...+..+.+|+.+||..||.+|||+.|+++
T Consensus       242 --~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05038         242 --GERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLIL  278 (284)
T ss_pred             --CCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence              0001112334578999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.4e-36  Score=297.14  Aligned_cols=247  Identities=23%  Similarity=0.321  Sum_probs=194.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCe----EEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSH----YVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~----~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ++.++|++.++||+|+||+||+|.++.+|.    .||+|+......  ....+.+|+.+++++      .|+||++++++
T Consensus         4 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~   77 (279)
T cd05057           4 LKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASV------DHPHVVRLLGI   77 (279)
T ss_pred             cCHHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhC------CCCCcceEEEE
Confidence            456789999999999999999999876654    699998776532  345678899999998      78889999998


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +..     ...++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.      
T Consensus        78 ~~~-----~~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~-~i~H~di~p~nil~~~------  144 (279)
T cd05057          78 CLS-----SQVQLITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKGMSYLEEK-RLVHRDLAARNVLVKT------  144 (279)
T ss_pred             Eec-----CceEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CEEecccCcceEEEcC------
Confidence            873     5789999999 899999886533 3489999999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (279)
T cd05057         145 --------------------------------------------------------------------------------  144 (279)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc-----CCCCCCCCccCChhhcCCCCCCcchh
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-----TNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                    +..++|+|||.+.......     ....++..|+|||.+....++.++||
T Consensus       145 ------------------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di  194 (279)
T cd05057         145 ------------------------------PQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDV  194 (279)
T ss_pred             ------------------------------CCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhH
Confidence                                          4568999999997543221     11223567999999988889999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          347 WSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       347 WSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      |||||++|+|++ |..||....       ...+...+.. +                                       
T Consensus       195 ~slG~~l~el~~~g~~p~~~~~-------~~~~~~~~~~-~---------------------------------------  227 (279)
T cd05057         195 WSYGVTVWELMTFGAKPYEGIP-------AVEIPDLLEK-G---------------------------------------  227 (279)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCC-------HHHHHHHHhC-C---------------------------------------
Confidence            999999999998 999996432       1111111110 0                                       


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .....+...+..+.+++.+||..||.+||++.++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~  263 (279)
T cd05057         228 ERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELIN  263 (279)
T ss_pred             CCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            001122334567899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=2.7e-36  Score=296.69  Aligned_cols=245  Identities=24%  Similarity=0.367  Sum_probs=188.2

Q ss_pred             EEeccccceEEEEEEeCCCC------eEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           48 SKLGWGHFSTVWLAWDTQTS------HYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~------~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +.||+|+||.||+|.+....      +.||||.+....  .....+.+|+.+++.+      .||||+++++++.    .
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   70 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNF------NHPNIVKLLGVCL----L   70 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhc------CCCCeeeEeeeec----C
Confidence            36999999999999876533      789999876543  3456778899999998      7888999999987    3


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADY-----RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~-----~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      ....++||||+ +++|.+++.....     ..+++..+..++.||+.||.|||++ +|+|+||||+|||++.....    
T Consensus        71 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dl~p~nil~~~~~~~----  145 (269)
T cd05044          71 NEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM-HFIHRDLAARNCLVSEKGYD----  145 (269)
T ss_pred             CCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC-CcccCCCChheEEEecCCCC----
Confidence            46799999999 8999999865322     2378899999999999999999996 99999999999999652100    


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (269)
T cd05044         146 --------------------------------------------------------------------------------  145 (269)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 ....++|+|||++......     .....++..|+|||++.+..++.++||||
T Consensus       146 ---------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  198 (269)
T cd05044         146 ---------------------------ADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWS  198 (269)
T ss_pred             ---------------------------CCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHH
Confidence                                       0236899999998643221     22334577899999999888999999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          349 FACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       349 lG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||++|+|++ |..||....      .......+. . +                                       ..
T Consensus       199 lG~il~ellt~g~~p~~~~~------~~~~~~~~~-~-~---------------------------------------~~  231 (269)
T cd05044         199 FGVLMWEILTLGQQPYPALN------NQEVLQHVT-A-G---------------------------------------GR  231 (269)
T ss_pred             HHHHHHHHHHcCCCCCcccC------HHHHHHHHh-c-C---------------------------------------Cc
Confidence            9999999998 999995322      111111110 0 0                                       01


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +..+...+..+.+||.+||..+|.+||+++++++
T Consensus       232 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  265 (269)
T cd05044         232 LQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQE  265 (269)
T ss_pred             cCCcccchHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            1123345678899999999999999999999875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-37  Score=323.36  Aligned_cols=256  Identities=22%  Similarity=0.360  Sum_probs=211.5

Q ss_pred             ccccCcEeeCCCEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCc
Q 045988           32 AVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKK  104 (530)
Q Consensus        32 ~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~  104 (530)
                      |-.--..|+..+-++.+.||+|+||.||+|+...     ....||||.++....  ...+|.||+++|..|      +||
T Consensus       476 ~~~~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l------~H~  549 (774)
T KOG1026|consen  476 PDLKVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAEL------QHP  549 (774)
T ss_pred             CccceeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhc------cCC
Confidence            3334455667788899999999999999997532     357899999887654  467899999999999      889


Q ss_pred             ceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc------------CCCCHHHHHHHHHHHHHHHHHHHhhCCc
Q 045988          105 CVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY------------RGVPLHMVKEICFHILVGLDHLHRELSI  171 (530)
Q Consensus       105 ~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~------------~~l~~~~~~~i~~qll~aL~~LH~~~gI  171 (530)
                      |||++++++.    .++.+|||+||| .|||.+++.....            ..++..+...|+.||+.|++||-++ .+
T Consensus       550 nIVrLlGVC~----~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~-~F  624 (774)
T KOG1026|consen  550 NIVRLLGVCR----EGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH-HF  624 (774)
T ss_pred             CeEEEEEEEc----cCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC-cc
Confidence            9999999999    668999999999 9999999975431            1278899999999999999999997 99


Q ss_pred             eeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCC
Q 045988          172 IHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDH  251 (530)
Q Consensus       172 vHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (530)
                      |||||-..|+||..                                                                  
T Consensus       625 VHRDLATRNCLVge------------------------------------------------------------------  638 (774)
T KOG1026|consen  625 VHRDLATRNCLVGE------------------------------------------------------------------  638 (774)
T ss_pred             cccchhhhhceecc------------------------------------------------------------------
Confidence            99999999999965                                                                  


Q ss_pred             CCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCC-----C
Q 045988          252 TSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQ-----T  326 (530)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~g-----t  326 (530)
                                                                        ...|||+|||+++..+......++     .
T Consensus       639 --------------------------------------------------~l~VKIsDfGLsRdiYssDYYk~~~~t~lP  668 (774)
T KOG1026|consen  639 --------------------------------------------------NLVVKISDFGLSRDIYSSDYYKVRGNTLLP  668 (774)
T ss_pred             --------------------------------------------------ceEEEecccccchhhhhhhhhcccCCceee
Confidence                                                              568999999999876655433333     5


Q ss_pred             CCccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccc
Q 045988          327 RQYRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR  405 (530)
Q Consensus       327 ~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  405 (530)
                      ..|||||.++...|++++||||+||+|||+++ |.-||.+.+      +.+.+..+..-                     
T Consensus       669 IRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glS------n~EVIe~i~~g---------------------  721 (774)
T KOG1026|consen  669 IRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLS------NQEVIECIRAG---------------------  721 (774)
T ss_pred             eecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccc------hHHHHHHHHcC---------------------
Confidence            58999999999999999999999999999987 889998776      44444433210                     


Q ss_pred             cCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          406 HGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                          ..+..+..++..+.+|+..||+.+|.+||+.+||-.
T Consensus       722 --------------------~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~  757 (774)
T KOG1026|consen  722 --------------------QLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIHS  757 (774)
T ss_pred             --------------------CcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence                                013457788999999999999999999999999744

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-38  Score=305.37  Aligned_cols=264  Identities=27%  Similarity=0.395  Sum_probs=205.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--------cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      +++|-++.+||+|+|+.||+|.+....++||+|+-..+.        .......+|.+|.+.|      +||-||++|++
T Consensus       462 n~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeL------DHpRIVKlYDy  535 (775)
T KOG1151|consen  462 NDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKEL------DHPRIVKLYDY  535 (775)
T ss_pred             HHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhcc------Ccceeeeeeee
Confidence            689999999999999999999999999999999854332        3345678899999999      78889999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh-CCceeccCCCCcEEEeeccCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRE-LSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~-~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      |..   +.+.+|-|+||| |.+|.-+++.+  +.+++.+++.|+.||+.||.||... ..|||=||||.||||....   
T Consensus       536 fsl---DtdsFCTVLEYceGNDLDFYLKQh--klmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~Gt---  607 (775)
T KOG1151|consen  536 FSL---DTDSFCTVLEYCEGNDLDFYLKQH--KLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGT---  607 (775)
T ss_pred             eee---ccccceeeeeecCCCchhHHHHhh--hhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCc---
Confidence            986   457899999999 66776677643  3499999999999999999999963 3699999999999995410   


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       608 --------------------------------------------------------------------------------  607 (775)
T KOG1151|consen  608 --------------------------------------------------------------------------------  607 (775)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------cCCCCCCCCccCChhhcCC--
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------FTNDIQTRQYRCPEVLLGS--  338 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------~~~~~gt~~y~aPE~l~~~--  338 (530)
                                                    ..+.+||.|||+++.....          .....||.||.+||.+.-.  
T Consensus       608 ------------------------------acGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgke  657 (775)
T KOG1151|consen  608 ------------------------------ACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKE  657 (775)
T ss_pred             ------------------------------ccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCC
Confidence                                          1467999999999764322          2335799999999998643  


Q ss_pred             --CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcc
Q 045988          339 --KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR  416 (530)
Q Consensus       339 --~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (530)
                        ..+.++||||+|||+|.++.|+-||......+   +.-+...|+.                                 
T Consensus       658 PPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQ---dILqeNTIlk---------------------------------  701 (775)
T KOG1151|consen  658 PPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQ---DILQENTILK---------------------------------  701 (775)
T ss_pred             CCccccceeeEeeehhhhhhhccCCCCCCchhHH---HHHhhhchhc---------------------------------
Confidence              26899999999999999999999995322100   0000111100                                 


Q ss_pred             cCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                            ...-.++.-+..++++.+||++||.+.-+.|+...++..||||.-+.+
T Consensus       702 ------AtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~dpyllPh~r  749 (775)
T KOG1151|consen  702 ------ATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLACDPYLLPHIR  749 (775)
T ss_pred             ------ceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHccCccccchhh
Confidence                  000112223456789999999999999999999999999999986543

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=7.6e-36  Score=290.22  Aligned_cols=238  Identities=22%  Similarity=0.342  Sum_probs=185.8

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ++||+|+||.||+|... ++..||+|++....  .....+.+|+++++++      .||||+++++++.    .....++
T Consensus         1 ~~ig~g~~g~vy~~~~~-~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~~~~~~l   69 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-DKTPVAVKTCKEDLPQELKIKFLSEARILKQY------DHPNIVKLIGVCT----QRQPIYI   69 (250)
T ss_pred             CccCCCCCceEEEEEec-CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhC------CCCCcCeEEEEEe----cCCccEE
Confidence            47999999999999854 68899999877543  2234677899999998      7888999999987    4467999


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccc
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLT  204 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~  204 (530)
                      ||||+ +++|.+++.... ..+++..+..++.|++.||.|||++ |++||||||+||+++.                   
T Consensus        70 v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~~~H~dl~p~nili~~-------------------  128 (250)
T cd05085          70 VMELVPGGDFLSFLRKKK-DELKTKQLVKFALDAAAGMAYLESK-NCIHRDLAARNCLVGE-------------------  128 (250)
T ss_pred             EEECCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccChheEEEcC-------------------
Confidence            99999 899998886432 3478999999999999999999997 9999999999999954                   


Q ss_pred             ccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 045988          205 KKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK  284 (530)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (530)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (250)
T cd05085         129 --------------------------------------------------------------------------------  128 (250)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCchhhhhhhhhcccceEEecCCccccccccc----CCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-C
Q 045988          285 DCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF----TNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-G  359 (530)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~----~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G  359 (530)
                                       +..++|+|||++.......    ....++..|+|||++.+..++.++|||||||++|+|++ |
T Consensus       129 -----------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g  191 (250)
T cd05085         129 -----------------NNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLG  191 (250)
T ss_pred             -----------------CCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCC
Confidence                             4568999999986432221    12234567999999988889999999999999999998 9


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHH
Q 045988          360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA  439 (530)
Q Consensus       360 ~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (530)
                      ..||.+..      ......   .+....                                      ....+...+..+.
T Consensus       192 ~~p~~~~~------~~~~~~---~~~~~~--------------------------------------~~~~~~~~~~~~~  224 (250)
T cd05085         192 VCPYPGMT------NQQARE---QVEKGY--------------------------------------RMSCPQKCPDDVY  224 (250)
T ss_pred             CCCCCCCC------HHHHHH---HHHcCC--------------------------------------CCCCCCCCCHHHH
Confidence            99996432      111111   110000                                      0012234567899


Q ss_pred             HHHhhccCcCCCCCcCHHHHhc
Q 045988          440 DFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       440 dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +|+.+||..+|.+||++.|+++
T Consensus       225 ~li~~~l~~~p~~Rp~~~~l~~  246 (250)
T cd05085         225 KVMQRCWDYKPENRPKFSELQK  246 (250)
T ss_pred             HHHHHHcccCcccCCCHHHHHH
Confidence            9999999999999999999976

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.8e-36  Score=291.24  Aligned_cols=238  Identities=23%  Similarity=0.369  Sum_probs=187.6

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ++||+|+||.||+|.+.. ++.||+|++.....  ....+.+|+++++++      .|+||+++++++.    .....++
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~----~~~~~~~   69 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLPPDLKRKFLQEAEILKQY------DHPNIVKLIGVCV----QKQPIYI   69 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCeEEEEEEEe----cCCCeEE
Confidence            479999999999999877 99999998776432  355778899999998      7888999999988    4478999


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccc
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLT  204 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~  204 (530)
                      ||||+ +++|.+++.... ..++...+..++.|++.||+|||++ ||+||||||+|||++.                   
T Consensus        70 v~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~di~p~nili~~-------------------  128 (251)
T cd05041          70 VMELVPGGSLLTFLRKKK-NRLTVKKLLQMSLDAAAGMEYLESK-NCIHRDLAARNCLVGE-------------------  128 (251)
T ss_pred             EEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CEehhhcCcceEEEcC-------------------
Confidence            99999 889999886432 3488999999999999999999997 9999999999999954                   


Q ss_pred             ccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccc
Q 045988          205 KKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINK  284 (530)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (530)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (251)
T cd05041         129 --------------------------------------------------------------------------------  128 (251)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCchhhhhhhhhcccceEEecCCccccccccc-----CCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-
Q 045988          285 DCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-----TNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-  358 (530)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-  358 (530)
                                       +..++|+|||.+.......     ....++..|+|||.+.+..++.++|||||||++|+|++ 
T Consensus       129 -----------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~  191 (251)
T cd05041         129 -----------------NNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSL  191 (251)
T ss_pred             -----------------CCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhc
Confidence                             4569999999986543111     11223556999999988889999999999999999999 


Q ss_pred             CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHH
Q 045988          359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM  438 (530)
Q Consensus       359 G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (530)
                      |..||.....       ......... +                                       .....+...+..+
T Consensus       192 ~~~p~~~~~~-------~~~~~~~~~-~---------------------------------------~~~~~~~~~~~~~  224 (251)
T cd05041         192 GDTPYPGMSN-------QQTRERIES-G---------------------------------------YRMPAPQLCPEEI  224 (251)
T ss_pred             cCCCCccCCH-------HHHHHHHhc-C---------------------------------------CCCCCCccCCHHH
Confidence            8899854321       111110000 0                                       0011223446789


Q ss_pred             HHHHhhccCcCCCCCcCHHHHhc
Q 045988          439 ADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       439 ~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+|+.+||+.+|.+|||+.|+|+
T Consensus       225 ~~li~~~l~~~p~~Rp~~~ell~  247 (251)
T cd05041         225 YRLMLQCWAYDPENRPSFSEIYN  247 (251)
T ss_pred             HHHHHHHhccChhhCcCHHHHHH
Confidence            99999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=3.6e-36  Score=301.66  Aligned_cols=249  Identities=20%  Similarity=0.274  Sum_probs=193.1

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCe----EEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSH----YVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~----~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      .|+.++|++.+.||+|+||.||+|.+..++.    .||+|++.....  ....+.+|+.+++.+      .||||+++++
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l------~h~niv~~~~   76 (303)
T cd05110           3 ILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASM------DHPHLVRLLG   76 (303)
T ss_pred             ccchhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCcccEEE
Confidence            4566789999999999999999999887775    578998765432  233567899999988      7888999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ++..     ...++|+||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||+..     
T Consensus        77 ~~~~-----~~~~~v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~-~ivH~dikp~Nill~~-----  144 (303)
T cd05110          77 VCLS-----PTIQLVTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKGMMYLEER-RLVHRDLAARNVLVKS-----  144 (303)
T ss_pred             EEcC-----CCceeeehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHhhc-CeeccccccceeeecC-----
Confidence            8863     2467999999 789999886432 3488999999999999999999997 9999999999999954     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (303)
T cd05110         145 --------------------------------------------------------------------------------  144 (303)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcch
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                     +..+||+|||++......     .....++..|+|||++.+..++.++|
T Consensus       145 -------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  193 (303)
T cd05110         145 -------------------------------PNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSD  193 (303)
T ss_pred             -------------------------------CCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHH
Confidence                                           356899999999754321     12234567899999999888999999


Q ss_pred             hHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          346 LWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       346 iWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      ||||||++|+|++ |..||.+..       ......+.....                                      
T Consensus       194 iwslG~~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~--------------------------------------  228 (303)
T cd05110         194 VWSYGVTIWELMTFGGKPYDGIP-------TREIPDLLEKGE--------------------------------------  228 (303)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCC-------HHHHHHHHHCCC--------------------------------------
Confidence            9999999999997 899995432       111111111000                                      


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                        ....+...+.++.+|+.+||..||++||++.++++.
T Consensus       229 --~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~  264 (303)
T cd05110         229 --RLPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAE  264 (303)
T ss_pred             --CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence              001122345678999999999999999999999884

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=9.6e-36  Score=292.99  Aligned_cols=244  Identities=21%  Similarity=0.306  Sum_probs=179.1

Q ss_pred             EEeccccceEEEEEEeCC--CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQ--TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~--~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      ++||+|+||+||+|....  ....+|+|.+....  .....+.+|+.+++.+      +|+||+++++.+.    .....
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l------~h~nii~~~~~~~----~~~~~   70 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYREL------NHPNVLQCLGQCI----ESIPY   70 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhC------CCCCcceEEEEEC----CCCce
Confidence            369999999999996433  45678999766432  2234567899998888      7888999999988    44689


Q ss_pred             EEEEecc-CcCHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          124 CMVFEYL-GENLLTLIKYADY---RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~---~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      |+||||+ +++|.+++.....   ...++..+..++.||+.||+|||++ ||+||||||+|||++.              
T Consensus        71 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nill~~--------------  135 (269)
T cd05042          71 LLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA-DFIHSDLALRNCQLTA--------------  135 (269)
T ss_pred             EEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc-CEecccccHhheEecC--------------
Confidence            9999999 8899999865432   2246788899999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (269)
T cd05042         136 --------------------------------------------------------------------------------  135 (269)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcC-------CCCCCcchhH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLG-------SKYSTPADLW  347 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~-------~~~~~~~DiW  347 (530)
                                            +..++|+|||++.....     ......++..|+|||++..       ..++.++|||
T Consensus       136 ----------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~Diw  193 (269)
T cd05042         136 ----------------------DLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIW  193 (269)
T ss_pred             ----------------------CCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHH
Confidence                                  45799999999864221     1223345678999999742       3568899999


Q ss_pred             HHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          348 SFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       348 SlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      ||||++|+|++ |..||....      ..+.+..+......   .+                                 .
T Consensus       194 slG~~l~el~~~~~~p~~~~~------~~~~~~~~~~~~~~---~~---------------------------------~  231 (269)
T cd05042         194 SLGVTMWELFTAADQPYPDLS------DEQVLKQVVREQDI---KL---------------------------------P  231 (269)
T ss_pred             HHHHHHHHHHhCCCCCCCcCC------HHHHHHHHhhccCc---cC---------------------------------C
Confidence            99999999999 788885332      12222221111000   00                                 0


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ....+...+..+.+++..|+ .||++|||++++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~  265 (269)
T cd05042         232 KPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHE  265 (269)
T ss_pred             CCcccccCCHHHHHHHHHHh-cCcccccCHHHHHH
Confidence            00122344567788999888 59999999999986

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1.5e-35  Score=291.75  Aligned_cols=244  Identities=21%  Similarity=0.294  Sum_probs=180.2

Q ss_pred             EEeccccceEEEEEEeC--CCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDT--QTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~--~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      +.||+|+||.||+|...  .++..+|+|.++....  ....+.+|+.+++++      .||||+++++.+..    ....
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~----~~~~   70 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSL------QHSNLLQCLGQCTE----VTPY   70 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhC------CCCCEeeEEEEEcC----CCCc
Confidence            46999999999999754  3567899998765432  234677899999998      78889999999874    4678


Q ss_pred             EEEEecc-CcCHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          124 CMVFEYL-GENLLTLIKYADY---RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~---~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ++||||+ +++|.+++.....   ...+...++.++.|++.||+|||++ ||+||||||+|||++.              
T Consensus        71 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dlkp~nil~~~--------------  135 (269)
T cd05087          71 LLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN-NFIHSDLALRNCLLTA--------------  135 (269)
T ss_pred             EEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC-CEeccccCcceEEEcC--------------
Confidence            9999999 7899999865332   2356778889999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (269)
T cd05087         136 --------------------------------------------------------------------------------  135 (269)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCC-------CCCCcchhH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGS-------KYSTPADLW  347 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~-------~~~~~~DiW  347 (530)
                                            ...++|+|||.+......     .....++..|+|||++.+.       .++.++|||
T Consensus       136 ----------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~Diw  193 (269)
T cd05087         136 ----------------------DLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVW  193 (269)
T ss_pred             ----------------------CCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhH
Confidence                                  456999999998643221     1234567889999998642       357899999


Q ss_pred             HHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          348 SFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       348 SlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      ||||++|+|++ |..||....      .........  .+....                             .     .
T Consensus       194 slG~~l~el~~~g~~p~~~~~------~~~~~~~~~--~~~~~~-----------------------------~-----~  231 (269)
T cd05087         194 SLGVTIWELFELGSQPYRHLS------DEQVLTYTV--REQQLK-----------------------------L-----P  231 (269)
T ss_pred             HHHHHHHHHHhCCCCCCCCCC------hHHHHHHHh--hcccCC-----------------------------C-----C
Confidence            99999999996 999995432      111111110  000000                             0     0


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ........+..+.+|+.+|+ .+|.+|||++||+.
T Consensus       232 ~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~  265 (269)
T cd05087         232 KPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHL  265 (269)
T ss_pred             CCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHH
Confidence            00111234567889999998 68999999999985

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=1.4e-35  Score=290.49  Aligned_cols=241  Identities=22%  Similarity=0.298  Sum_probs=181.7

Q ss_pred             EEeccccceEEEEEEeCC---CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           48 SKLGWGHFSTVWLAWDTQ---TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~---~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      +.||+|+||.||+|.+..   .+..||||.+....  .....+.+|+.+++.+      .||||+++++++...   +..
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~---~~~   71 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDF------SHPNVLSLLGICLPS---EGS   71 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccC------CCCCcceEEEEeecC---CCC
Confidence            468999999999998653   35689999875432  2345677899998888      788899999976532   346


Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      .++||||+ +++|.+++.... ..++...+..++.||+.||+|||+. +|+||||||+|||++.                
T Consensus        72 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlk~~nili~~----------------  133 (262)
T cd05058          72 PLVVLPYMKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLASK-KFVHRDLAARNCMLDE----------------  133 (262)
T ss_pred             cEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CccccccCcceEEEcC----------------
Confidence            88999999 899999986432 3367788889999999999999997 9999999999999954                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (262)
T cd05058         134 --------------------------------------------------------------------------------  133 (262)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                          .+.++|+|||++......       .....++..|+|||.+.+..++.++|||||||++|
T Consensus       134 --------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  193 (262)
T cd05058         134 --------------------SFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLW  193 (262)
T ss_pred             --------------------CCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHH
Confidence                                456899999998643211       12334577899999998888999999999999999


Q ss_pred             HHHhC-CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELATG-DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 elltG-~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +|++| .+||....      ......   .+...                                      .....+..
T Consensus       194 el~~~~~~~~~~~~------~~~~~~---~~~~~--------------------------------------~~~~~~~~  226 (262)
T cd05058         194 ELMTRGAPPYPDVD------SFDITV---YLLQG--------------------------------------RRLLQPEY  226 (262)
T ss_pred             HHHcCCCCCCCCCC------HHHHHH---HHhcC--------------------------------------CCCCCCCc
Confidence            99995 66674321      111111   11000                                      00111223


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      .+..+.+|+.+||..+|++||++.+++..
T Consensus       227 ~~~~~~~li~~cl~~~p~~Rp~~~~il~~  255 (262)
T cd05058         227 CPDPLYEVMLSCWHPKPEMRPTFSELVSR  255 (262)
T ss_pred             CCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence            45678999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-36  Score=307.35  Aligned_cols=250  Identities=21%  Similarity=0.313  Sum_probs=198.0

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCC---eE-EEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTS---HY-VALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~---~~-vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      .|..++-.+.++||+|+||.||+|..+..+   .. ||+|..+..    ......+++|.++|+.+      +|||||++
T Consensus       153 el~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l------~H~NVVr~  226 (474)
T KOG0194|consen  153 ELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQL------NHPNVVRF  226 (474)
T ss_pred             EEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhC------CCCCEEEE
Confidence            345566677899999999999999876542   23 899987742    34456788999999999      88999999


Q ss_pred             cceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccC
Q 045988          110 LDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID  188 (530)
Q Consensus       110 ~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~  188 (530)
                      |++..    ....++||||+| ||+|.++++.... .++..+...++.+.+.||+|||++ ++|||||-..|+|++.   
T Consensus       227 yGVa~----~~~Pl~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~k-~~IHRDIAARNcL~~~---  297 (474)
T KOG0194|consen  227 YGVAV----LEEPLMLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHSK-NCIHRDIAARNCLYSK---  297 (474)
T ss_pred             EEEEc----CCCccEEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHHC-CCcchhHhHHHheecC---
Confidence            99988    447899999999 9999999985443 499999999999999999999997 9999999999999965   


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                                                                                                      
T Consensus       298 --------------------------------------------------------------------------------  297 (474)
T KOG0194|consen  298 --------------------------------------------------------------------------------  297 (474)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cC-CCCCCCCccCChhhcCCCCCCcch
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FT-NDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~-~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                       +..+||+|||+++....-  .. ...-...|+|||.+....|++++|
T Consensus       298 ---------------------------------~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTD  344 (474)
T KOG0194|consen  298 ---------------------------------KGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTD  344 (474)
T ss_pred             ---------------------------------CCeEEeCccccccCCcceeeccccccCcceecChhhhccCccccccc
Confidence                                             345799999999765311  11 112356899999999989999999


Q ss_pred             hHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          346 LWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       346 iWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      |||+||++||+++ |..||.+..      ..+..+.+... |                                      
T Consensus       345 V~sfGV~~~Eif~~g~~Py~g~~------~~~v~~kI~~~-~--------------------------------------  379 (474)
T KOG0194|consen  345 VWSFGVLLWEIFENGAEPYPGMK------NYEVKAKIVKN-G--------------------------------------  379 (474)
T ss_pred             hhheeeeEEeeeccCCCCCCCCC------HHHHHHHHHhc-C--------------------------------------
Confidence            9999999999999 788997654      12222222110 0                                      


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                       .....+...+..+..++.+|+..||++||++.++.+
T Consensus       380 -~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~  415 (474)
T KOG0194|consen  380 -YRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKK  415 (474)
T ss_pred             -ccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHH
Confidence             011233456788899999999999999999999876

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=1.4e-35  Score=292.24  Aligned_cols=249  Identities=21%  Similarity=0.334  Sum_probs=189.0

Q ss_pred             EEEEEEeccccceEEEEEEeCC---CCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQ---TSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~---~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      |.+.+.||+|+||.||+|....   +++.||||++....   ...+.+.+|+++++++      .||||+++++++....
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~~   74 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEF------DHPNVIKLIGVSLRSR   74 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcC------CCCCcceEEEEEccCC
Confidence            6788999999999999998643   57899999887542   2345678899999998      7888999999887542


Q ss_pred             CCC--cEEEEEEecc-CcCHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          118 PNG--QHVCMVFEYL-GENLLTLIKYADY----RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       118 ~~~--~~~~lVmE~~-~~~L~~~i~~~~~----~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ..+  ...++++||+ +++|..++.....    ..++...+..++.||+.||+|||++ ||+||||||+||+++.     
T Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~nili~~-----  148 (273)
T cd05074          75 AKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK-NFIHRDLAARNCMLNE-----  148 (273)
T ss_pred             CCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeecccchhhEEEcC-----
Confidence            111  2457899999 8898887643221    2378899999999999999999997 9999999999999954     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (273)
T cd05074         149 --------------------------------------------------------------------------------  148 (273)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcch
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                     +..++|+|||.+......     .....+++.|++||.+.+..++.++|
T Consensus       149 -------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sD  197 (273)
T cd05074         149 -------------------------------NMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSD  197 (273)
T ss_pred             -------------------------------CCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhh
Confidence                                           456899999998754221     12234567899999999888999999


Q ss_pred             hHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          346 LWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       346 iWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      ||||||++|+|++ |.+||....      .......+..  +                                      
T Consensus       198 i~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~--------------------------------------  231 (273)
T cd05074         198 VWAFGVTMWEIMTRGQTPYAGVE------NSEIYNYLIK--G--------------------------------------  231 (273)
T ss_pred             hHHHHHHHHHHhhCCCCCCCCCC------HHHHHHHHHc--C--------------------------------------
Confidence            9999999999999 889985332      1111111100  0                                      


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                       .....+...+..+.+|+.+||..+|.+||++.+++.+
T Consensus       232 -~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~  268 (273)
T cd05074         232 -NRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQ  268 (273)
T ss_pred             -CcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence             0001122345789999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=2.5e-35  Score=289.89  Aligned_cols=249  Identities=24%  Similarity=0.375  Sum_probs=191.4

Q ss_pred             CEEEEEEeccccceEEEEEEeCC-CCeEEEEEEecccc-----------cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQ-TSHYVALKVQKSAQ-----------HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~-~~~~vAiK~~~~~~-----------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .|++.+.||+|+||.||+|.+.. +++.+|+|.+....           .....+.+|+.++.+..     .|+||++++
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~   75 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQL-----RHPNIVRYY   75 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcC-----CCCCeeeEE
Confidence            48899999999999999999887 68999999865321           12234566777776532     789999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      +++.    .+...++||||+ +++|.+++...  ....+++..++.++.||+.||.|||++.||+||||||+|||++.  
T Consensus        76 ~~~~----~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~--  149 (269)
T cd08528          76 KTFL----ENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGE--  149 (269)
T ss_pred             eeEc----cCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECC--
Confidence            9998    457899999999 88998887543  23348999999999999999999996338999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (269)
T cd08528         150 --------------------------------------------------------------------------------  149 (269)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcch
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                        +..++|+|||.+.....  ......|+..|+|||++.+..++.++|
T Consensus       150 ----------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D  195 (269)
T cd08528         150 ----------------------------------DDKVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKAD  195 (269)
T ss_pred             ----------------------------------CCcEEEecccceeecccccccccccCcccCcChhhhcCCCCchHHH
Confidence                                              45699999999965432  234556889999999999888999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|+|++|.+||....      .......   +.....                            .+      
T Consensus       196 v~slG~ll~~l~~g~~p~~~~~------~~~~~~~---~~~~~~----------------------------~~------  232 (269)
T cd08528         196 VWAFGCILYQMCTLQPPFYSTN------MLSLATK---IVEAVY----------------------------EP------  232 (269)
T ss_pred             HHHHHHHHHHHHhCCCcccccC------HHHHHHH---HhhccC----------------------------Cc------
Confidence            9999999999999999995321      1111111   100000                            00      


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                         ......++.+.+||.+||..||.+||++.|+.++
T Consensus       233 ---~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~  266 (269)
T cd08528         233 ---LPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAM  266 (269)
T ss_pred             ---CCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHH
Confidence               0011345789999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=7.8e-35  Score=286.59  Aligned_cols=244  Identities=21%  Similarity=0.323  Sum_probs=178.4

Q ss_pred             EEeccccceEEEEEEeCCC--CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           48 SKLGWGHFSTVWLAWDTQT--SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~--~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      ++||+|+||.||+|.....  ...+++|.+....  .....+.+|+.+++.+      +||||+++++.+.    .....
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l------~h~~iv~~~~~~~----~~~~~   70 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRIL------QHPNILQCLGQCV----EAIPY   70 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhcc------CCcchhheEEEec----CCCcc
Confidence            3699999999999975433  3456777665432  2346788899989888      7889999999988    44689


Q ss_pred             EEEEecc-CcCHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          124 CMVFEYL-GENLLTLIKYADY--RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       124 ~lVmE~~-~~~L~~~i~~~~~--~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      |+||||+ +++|.+++.....  ..+++..+..++.||+.||+|||++ +|+||||||+|||++.               
T Consensus        71 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~H~dikp~nil~~~---------------  134 (268)
T cd05086          71 LLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH-NFLHSDLALRNCFLTS---------------  134 (268)
T ss_pred             EEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC-CeeccCCccceEEEcC---------------
Confidence            9999999 8899999875422  2366778889999999999999997 9999999999999954               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (268)
T cd05086         135 --------------------------------------------------------------------------------  134 (268)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcC-------CCCCCcchhHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLG-------SKYSTPADLWS  348 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~-------~~~~~~~DiWS  348 (530)
                                           ++.++|+|||++.....     ......++..|+|||++..       ..++.++||||
T Consensus       135 ---------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~Diws  193 (268)
T cd05086         135 ---------------------DLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWA  193 (268)
T ss_pred             ---------------------CccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHH
Confidence                                 45699999999854211     1234567889999999853       24578999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          349 FACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       349 lG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||++|+|++ |.+||....      ....+..+..-   .....                                 ..
T Consensus       194 lG~~l~el~~~~~~p~~~~~------~~~~~~~~~~~---~~~~~---------------------------------~~  231 (268)
T cd05086         194 LGVTLWELFENAAQPYSHLS------DREVLNHVIKD---QQVKL---------------------------------FK  231 (268)
T ss_pred             HHHHHHHHHhCCCCCCCCCC------HHHHHHHHHhh---ccccc---------------------------------CC
Confidence            9999999997 567885332      11222211110   00000                                 00


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ..+....++.+.+|+..|| .+|.+||++.++++
T Consensus       232 ~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~  264 (268)
T cd05086         232 PQLELPYSERWYEVLQFCW-LSPEKRATAEEVHR  264 (268)
T ss_pred             CccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHH
Confidence            1112234577889999999 68999999999975

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.1e-34  Score=304.63  Aligned_cols=276  Identities=19%  Similarity=0.265  Sum_probs=187.2

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeC----------------CCCeEEEEEEeccccc---------------chHHHHH
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDT----------------QTSHYVALKVQKSAQH---------------YTEAALD   87 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~----------------~~~~~vAiK~~~~~~~---------------~~~~~~~   87 (530)
                      +..++|.+.++||+|+||+||+|...                ..++.||||.+.....               ..+....
T Consensus       142 ~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~v  221 (507)
T PLN03224        142 WSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMV  221 (507)
T ss_pred             ccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHH
Confidence            45679999999999999999999752                2356899998764321               1123345


Q ss_pred             HHHHHHHhhcCCCCCCcceeEecceeeecCC----CCcEEEEEEecc-CcCHHHHHHhhcc-------------------
Q 045988           88 EIKILKQIAEGDPDDKKCVVKLLDHFKHSGP----NGQHVCMVFEYL-GENLLTLIKYADY-------------------  143 (530)
Q Consensus        88 Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~----~~~~~~lVmE~~-~~~L~~~i~~~~~-------------------  143 (530)
                      |+.++.++.|.+ ..+.++++++++|.....    .....+|||||+ +++|.+++.....                   
T Consensus       222 E~~~l~~l~~~~-l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~  300 (507)
T PLN03224        222 EAYMCAKIKRNP-IAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDN  300 (507)
T ss_pred             HHHHHHHhhccc-chhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhh
Confidence            777777776543 245667788887764211    234689999999 8899988863210                   


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHH
Q 045988          144 ---RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKI  220 (530)
Q Consensus       144 ---~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (530)
                         ..+++..++.++.||+.||.|||++ +|+||||||+|||++.                                   
T Consensus       301 ~~~~~~~~~~~~~i~~ql~~aL~~lH~~-~ivHrDLKp~NILl~~-----------------------------------  344 (507)
T PLN03224        301 MPQDKRDINVIKGVMRQVLTGLRKLHRI-GIVHRDIKPENLLVTV-----------------------------------  344 (507)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCchHhEEECC-----------------------------------
Confidence               1245677899999999999999997 9999999999999954                                   


Q ss_pred             HHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhh
Q 045988          221 KKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAA  300 (530)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (530)
                                                                                                      
T Consensus       345 --------------------------------------------------------------------------------  344 (507)
T PLN03224        345 --------------------------------------------------------------------------------  344 (507)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceEEecCCcccccccc--cCC--CCCCCCccCChhhcCCC--------------------CC--CcchhHHHHHHHH
Q 045988          301 VDLKCKLVDFGNACWTYKQ--FTN--DIQTRQYRCPEVLLGSK--------------------YS--TPADLWSFACICF  354 (530)
Q Consensus       301 ~~~~vkL~DfG~a~~~~~~--~~~--~~gt~~y~aPE~l~~~~--------------------~~--~~~DiWSlG~il~  354 (530)
                       +..++|+|||++......  ...  ..+|+.|+|||++....                    |+  .+.||||+||++|
T Consensus       345 -~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~  423 (507)
T PLN03224        345 -DGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLM  423 (507)
T ss_pred             -CCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHH
Confidence             456899999998643221  111  23478999999986432                    22  2479999999999


Q ss_pred             HHHhCCC-CCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELATGDV-LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 elltG~~-PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +|++|.+ ||......+         .........-..                    ++.      .+.....+.....
T Consensus       424 em~~~~l~p~~~~~~f~---------~~~~~~~~~~~~--------------------~r~------~~~~~~~~~~~d~  468 (507)
T PLN03224        424 QMCVPELRPVANIRLFN---------TELRQYDNDLNR--------------------WRM------YKGQKYDFSLLDR  468 (507)
T ss_pred             HHHhCCCCCccchhhhh---------hHHhhccchHHH--------------------HHh------hcccCCCcccccc
Confidence            9999985 774321110         000000000000                    000      0000001122344


Q ss_pred             cHHHHHHHHhhccCcCC---CCCcCHHHHhcCCCCCC
Q 045988          434 DANDMADFLVPILDFVP---EKRPTAAQCLTHPWINV  467 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP---~~Rpta~elL~hp~f~~  467 (530)
                      .++..+|||.+||..+|   .+|+|++|+|+||||..
T Consensus       469 ~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp~f~~  505 (507)
T PLN03224        469 NKEAGWDLACKLITKRDQANRGRLSVGQALSHRFFLP  505 (507)
T ss_pred             cChHHHHHHHHHhccCCCCcccCCCHHHHhCCCCcCC
Confidence            67889999999999876   68999999999999964

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-35  Score=317.44  Aligned_cols=247  Identities=20%  Similarity=0.319  Sum_probs=200.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCC-----CeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQT-----SHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~-----~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ...-++.+.||+|+||.||.|.....     ...||||.+++.  ......+.+|..+|+.+      +|||||+++++.
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f------~HpNiv~liGv~  764 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKF------DHPNIVSLIGVC  764 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcC------CCcceeeEEEee
Confidence            56788899999999999999986543     245999988765  34567889999999999      889999999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYAD-----YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~-----~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      .+    ....+|++||| +|+|..++...+     ...++..+...++.||+.|+.||+++ ++|||||-..|+||+.  
T Consensus       765 l~----~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~-~fvHRDLAaRNCLL~~--  837 (1025)
T KOG1095|consen  765 LD----SGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK-HFVHRDLAARNCLLDE--  837 (1025)
T ss_pred             cC----CCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC-CCcCcchhhhheeecc--
Confidence            85    46789999999 999999998652     23488999999999999999999997 9999999999999965  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       838 --------------------------------------------------------------------------------  837 (1025)
T KOG1095|consen  838 --------------------------------------------------------------------------------  837 (1025)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc-CCC----CCCCCccCChhhcCCCCCC
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-TND----IQTRQYRCPEVLLGSKYST  342 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-~~~----~gt~~y~aPE~l~~~~~~~  342 (530)
                                                        ...|||+|||+|+...... ...    .-...|||||.+....++.
T Consensus       838 ----------------------------------~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFts  883 (1025)
T KOG1095|consen  838 ----------------------------------RRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTS  883 (1025)
T ss_pred             ----------------------------------cCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhccccc
Confidence                                              4579999999998543321 111    2245799999999989999


Q ss_pred             cchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCch
Q 045988          343 PADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       343 ~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      ++|||||||+|||+++ |..||+..+      ..+.+.. +..-                                    
T Consensus       884 kSDvWsFGVllWEifslG~~PY~~~~------n~~v~~~-~~~g------------------------------------  920 (1025)
T KOG1095|consen  884 KSDVWSFGVLLWEIFSLGATPYPSRS------NFEVLLD-VLEG------------------------------------  920 (1025)
T ss_pred             ccchhhhHHHHHHHHhCCCCCCCCcc------hHHHHHH-HHhC------------------------------------
Confidence            9999999999999998 789997544      2222211 1111                                    


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                          .++..+..++..+.+||..||+.+|++||+...|++
T Consensus       921 ----gRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~  956 (1025)
T KOG1095|consen  921 ----GRLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVE  956 (1025)
T ss_pred             ----CccCCCCCCChHHHHHHHHHccCChhhCccHHHHHh
Confidence                123445667888999999999999999999999998

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-36  Score=311.67  Aligned_cols=253  Identities=23%  Similarity=0.307  Sum_probs=190.4

Q ss_pred             EEEEEEeccccce-EEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           44 YVVQSKLGWGHFS-TVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        44 y~i~~~LG~G~fg-~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      |.-.+.+|.|+.| .||+|.  ..|+.||+|.+....  ...+.+|+..|+.-.     .|||||++|..=.    +..+
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~--ye~R~VAVKrll~e~--~~~A~rEi~lL~eSD-----~H~NviRyyc~E~----d~qF  577 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGV--YEGREVAVKRLLEEF--FDFAQREIQLLQESD-----EHPNVIRYYCSEQ----DRQF  577 (903)
T ss_pred             eccHHHcccCCCCcEEEEEe--eCCceehHHHHhhHh--HHHHHHHHHHHHhcc-----CCCceEEEEeecc----CCce
Confidence            4446778999997 569994  678899999766532  556789999987764     8999999998866    5689


Q ss_pred             EEEEEeccCcCHHHHHHhh-cc-CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          123 VCMVFEYLGENLLTLIKYA-DY-RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       123 ~~lVmE~~~~~L~~~i~~~-~~-~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      .||..|+|..+|.+++... .. ........+.++.|++.||++||+ ++||||||||.||||+....            
T Consensus       578 ~YIalELC~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs-l~iVHRDLkPQNILI~~~~~------------  644 (903)
T KOG1027|consen  578 LYIALELCACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS-LKIVHRDLKPQNILISVPSA------------  644 (903)
T ss_pred             EEEEehHhhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHh-cccccccCCCceEEEEccCC------------
Confidence            9999999999999999863 11 111224567889999999999999 79999999999999965210            


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       645 --------------------------------------------------------------------------------  644 (903)
T KOG1027|consen  645 --------------------------------------------------------------------------------  644 (903)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                         .....++|+|||+++.....      .....||-+|+|||++....-+.++|||||||++|
T Consensus       645 -------------------~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfy  705 (903)
T KOG1027|consen  645 -------------------DGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFY  705 (903)
T ss_pred             -------------------CcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEE
Confidence                               01467999999999764322      45567999999999999888888999999999999


Q ss_pred             HHHhC-CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELATG-DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 elltG-~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +.++| ..||....           .+-.+++.....                  +                  ..+.+.
T Consensus       706 YvltgG~HpFGd~~-----------~R~~NIl~~~~~------------------L------------------~~L~~~  738 (903)
T KOG1027|consen  706 YVLTGGSHPFGDSL-----------ERQANILTGNYT------------------L------------------VHLEPL  738 (903)
T ss_pred             EEecCCccCCCchH-----------HhhhhhhcCccc------------------e------------------eeeccC
Confidence            98887 89995321           111111100000                  0                  001111


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ...++.|||.+||++||..||+|.++|.||+|-..
T Consensus       739 ~d~eA~dLI~~ml~~dP~~RPsa~~VL~HPlFW~~  773 (903)
T KOG1027|consen  739 PDCEAKDLISRMLNPDPQLRPSATDVLNHPLFWDS  773 (903)
T ss_pred             chHHHHHHHHHhcCCCcccCCCHHHHhCCCccCCh
Confidence            11178999999999999999999999999999654

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-35  Score=294.78  Aligned_cols=244  Identities=21%  Similarity=0.342  Sum_probs=197.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCC----CeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQT----SHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~----~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      .....+.++||.|-||.||.|.....    .--||||..+.+  ....+.++.|.-+|+.+      +|||||++++++.
T Consensus       388 Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnf------dHphIikLIGv~~  461 (974)
T KOG4257|consen  388 RELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNF------DHPHIIKLIGVCV  461 (974)
T ss_pred             hhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhC------CCcchhheeeeee
Confidence            34456678999999999999975433    356999988764  45578899999999999      8999999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .     ..++||||++ -|.|..+++..+. .++......+++||+.||+|||++ ++|||||-..|||+.+        
T Consensus       462 e-----~P~WivmEL~~~GELr~yLq~nk~-sL~l~tL~ly~~Qi~talaYLeSk-rfVHRDIAaRNiLVsS--------  526 (974)
T KOG4257|consen  462 E-----QPMWIVMELAPLGELREYLQQNKD-SLPLRTLTLYCYQICTALAYLESK-RFVHRDIAARNILVSS--------  526 (974)
T ss_pred             c-----cceeEEEecccchhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhh-chhhhhhhhhheeecC--------
Confidence            5     5799999999 8999999986554 489999999999999999999997 9999999999999955        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       527 --------------------------------------------------------------------------------  526 (974)
T KOG4257|consen  527 --------------------------------------------------------------------------------  526 (974)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc--CCCCC--CCCccCChhhcCCCCCCcchhHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF--TNDIQ--TRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~--~~~~g--t~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                  ...|||+|||+++......  ....|  ...|||||.+.-..++.++|||.|
T Consensus       527 ----------------------------p~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMF  578 (974)
T KOG4257|consen  527 ----------------------------PQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMF  578 (974)
T ss_pred             ----------------------------cceeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHH
Confidence                                        4579999999998765442  11122  457999999998899999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          350 ACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       350 G~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      ||.+||++. |.-||.+-...+.      +                            +.+             ..-+++
T Consensus       579 gVCmWEIl~lGvkPfqgvkNsDV------I----------------------------~~i-------------EnGeRl  611 (974)
T KOG4257|consen  579 GVCMWEILSLGVKPFQGVKNSDV------I----------------------------GHI-------------ENGERL  611 (974)
T ss_pred             HHHHHHHHHhcCCccccccccce------E----------------------------EEe-------------cCCCCC
Confidence            999999864 8999976542221      0                            000             011244


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHh
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCL  460 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL  460 (530)
                      +.|+.+++.+..|+.+||.++|.+||+..|+.
T Consensus       612 P~P~nCPp~LYslmskcWayeP~kRPrftei~  643 (974)
T KOG4257|consen  612 PCPPNCPPALYSLMSKCWAYEPSKRPRFTEIK  643 (974)
T ss_pred             CCCCCCChHHHHHHHHHhccCcccCCcHHHHH
Confidence            67788999999999999999999999987764

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-34  Score=290.34  Aligned_cols=198  Identities=28%  Similarity=0.468  Sum_probs=175.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHH---------HHHHHHHHhhcCCCCCCcceeEecc
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAAL---------DEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~---------~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      -..|..++.||+|+||.||+|.++.+...|+||++.+.......++         .||.||..|+..   .|+||+++++
T Consensus       560 ~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~---sH~NIlKlLd  636 (772)
T KOG1152|consen  560 FSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKH---SHENILKLLD  636 (772)
T ss_pred             cccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhc---Cccchhhhhh
Confidence            4579999999999999999999999999999999988764444443         499999999643   6999999999


Q ss_pred             eeeecCCCCcEEEEEEecc--CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~--~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      +|+    +++++||+||.-  +-+|+++|....  .+++.+++.|++|++.|+++||+. ||||||||-+|+.++.    
T Consensus       637 fFE----ddd~yyl~te~hg~gIDLFd~IE~kp--~m~E~eAk~IFkQV~agi~hlh~~-~ivhrdikdenvivd~----  705 (772)
T KOG1152|consen  637 FFE----DDDYYYLETEVHGEGIDLFDFIEFKP--RMDEPEAKLIFKQVVAGIKHLHDQ-GIVHRDIKDENVIVDS----  705 (772)
T ss_pred             eee----cCCeeEEEecCCCCCcchhhhhhccC--ccchHHHHHHHHHHHhcccccccc-CceecccccccEEEec----
Confidence            999    568999999998  669999998544  499999999999999999999997 9999999999999966    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       706 --------------------------------------------------------------------------------  705 (772)
T KOG1152|consen  706 --------------------------------------------------------------------------------  705 (772)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccc-cccccCCCCCCCCccCChhhcCCCC-CCcchhH
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACW-TYKQFTNDIQTRQYRCPEVLLGSKY-STPADLW  347 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~-~~~~~~~~~gt~~y~aPE~l~~~~~-~~~~DiW  347 (530)
                                                      ++-+||+|||.|.. ...++..++||..|.|||++.|.+| +..-|||
T Consensus       706 --------------------------------~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiw  753 (772)
T KOG1152|consen  706 --------------------------------NGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIW  753 (772)
T ss_pred             --------------------------------CCeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhh
Confidence                                            57799999999865 4566788899999999999999887 6778999


Q ss_pred             HHHHHHHHHHhCCCCCC
Q 045988          348 SFACICFELATGDVLFD  364 (530)
Q Consensus       348 SlG~il~elltG~~PF~  364 (530)
                      +||++||.++....||.
T Consensus       754 algillytivykenpyy  770 (772)
T KOG1152|consen  754 ALGILLYTIVYKENPYY  770 (772)
T ss_pred             hhhheeeEEEeccCCCc
Confidence            99999999999999984

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-34  Score=255.95  Aligned_cols=213  Identities=23%  Similarity=0.361  Sum_probs=174.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .+....+..||+|+||.|-+.++..+|+..|+|.+...-  ....+.++|+.+..+..     .+|++|.+|+.+.+   
T Consensus        45 ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~-----~CPf~V~FyGa~~r---  116 (282)
T KOG0984|consen   45 ADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTV-----DCPFTVHFYGALFR---  116 (282)
T ss_pred             hhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCC-----CCCeEEEeehhhhc---
Confidence            455666789999999999999999999999999876543  23445667777766653     89999999998884   


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADY--RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~--~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ...++|.||.|..+|..+....-.  ..+++..+-+|+..++.||.|||+++.||||||||+||||+.           
T Consensus       117 -egdvwIcME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~-----------  184 (282)
T KOG0984|consen  117 -EGDVWICMELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINY-----------  184 (282)
T ss_pred             -cccEEEeHHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEcc-----------
Confidence             457999999999999887765432  348999999999999999999999999999999999999965           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (282)
T KOG0984|consen  185 --------------------------------------------------------------------------------  184 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc--CCCCCCCCccCChhhcC----CCCCCcchhHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF--TNDIQTRQYRCPEVLLG----SKYSTPADLWSFA  350 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~--~~~~gt~~y~aPE~l~~----~~~~~~~DiWSlG  350 (530)
                                               .++||+||||.+-....+.  +-..|...|||||.+..    +.|+-++||||||
T Consensus       185 -------------------------~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLG  239 (282)
T KOG0984|consen  185 -------------------------DGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLG  239 (282)
T ss_pred             -------------------------CCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhh
Confidence                                     6889999999997665442  33578899999999863    4699999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHH
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMME  383 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~  383 (530)
                      ++++||.++++||+.     ......++.+++.
T Consensus       240 ItmiElA~lr~PY~~-----w~tpF~qLkqvVe  267 (282)
T KOG0984|consen  240 ITMIEMAILRFPYES-----WGTPFQQLKQVVE  267 (282)
T ss_pred             hhhhhhhhccccccc-----cCCHHHHHHHHhc
Confidence            999999999999963     2335566666554

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=100.00  E-value=6.2e-33  Score=266.87  Aligned_cols=239  Identities=36%  Similarity=0.511  Sum_probs=191.0

Q ss_pred             cceEEEEEEeCCCCeEEEEEEecccccc--hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-
Q 045988           54 HFSTVWLAWDTQTSHYVALKVQKSAQHY--TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-  130 (530)
Q Consensus        54 ~fg~Vy~a~~~~~~~~vAiK~~~~~~~~--~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-  130 (530)
                      +||.||+|.+..+++.||+|++......  ...+.+|+++++++      .|+||+++++.+..    ....++||||+ 
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l------~~~~i~~~~~~~~~----~~~~~l~~e~~~   70 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKL------KHPNIVRLYDVFED----EDKLYLVMEYCD   70 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhC------CCCcHHHHHhheee----CCEEEEEEeCCC
Confidence            5899999999989999999998765432  46788999999998      78889999999884    47899999999 


Q ss_pred             CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccccccccc
Q 045988          131 GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLV  210 (530)
Q Consensus       131 ~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (530)
                      +++|.+++....  .++...+..++.+++.+|.|||+. +|+|+||+|.||+++.                         
T Consensus        71 ~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~~i~~~ni~~~~-------------------------  122 (244)
T smart00220       71 GGDLFDLLKKRG--RLSEDEARFYARQILSALEYLHSN-GIIHRDLKPENILLDE-------------------------  122 (244)
T ss_pred             CCCHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHc-CeecCCcCHHHeEECC-------------------------
Confidence            559999886433  288999999999999999999997 9999999999999955                         


Q ss_pred             CCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCC
Q 045988          211 LDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPS  290 (530)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (530)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (244)
T smart00220      123 --------------------------------------------------------------------------------  122 (244)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCC
Q 045988          291 RSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSG  368 (530)
Q Consensus       291 ~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~  368 (530)
                                 ...++|+|||.+.....  ......++..|++||.+.+..++.++||||||+++|+|++|..||.... 
T Consensus       123 -----------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~-  190 (244)
T smart00220      123 -----------DGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDD-  190 (244)
T ss_pred             -----------CCcEEEccccceeeeccccccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-
Confidence                       35699999999976543  3455678899999999988889999999999999999999999995321 


Q ss_pred             CCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCc
Q 045988          369 DNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDF  448 (530)
Q Consensus       369 ~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~  448 (530)
                           .   ...+...+.......                                   .......+..+.+++.+||..
T Consensus       191 -----~---~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~i~~~l~~  227 (244)
T smart00220      191 -----Q---LLELFKKIGKPKPPF-----------------------------------PPPEWKISPEAKDLIRKLLVK  227 (244)
T ss_pred             -----c---HHHHHHHHhccCCCC-----------------------------------ccccccCCHHHHHHHHHHccC
Confidence                 1   111222111110000                                   000001457899999999999


Q ss_pred             CCCCCcCHHHHhcCCCC
Q 045988          449 VPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       449 dP~~Rpta~elL~hp~f  465 (530)
                      ||.+||++.++++||||
T Consensus       228 ~p~~Rp~~~~~~~~~~~  244 (244)
T smart00220      228 DPEKRLTAEEALQHPFF  244 (244)
T ss_pred             CchhccCHHHHhhCCCC
Confidence            99999999999999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-34  Score=285.93  Aligned_cols=256  Identities=22%  Similarity=0.344  Sum_probs=202.2

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .+...+..+.++||+|-||.|.+|. ...+.+||+|+++...  +....+.+|+++|.+|      .|||||++++++. 
T Consensus       534 EfPRs~L~~~ekiGeGqFGEVhLCe-veg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqL------khPNIveLvGVC~-  605 (807)
T KOG1094|consen  534 EFPRSRLRFKEKIGEGQFGEVHLCE-VEGPLKVAVKILRPDATKNARNDFLKEIKILSRL------KHPNIVELLGVCV-  605 (807)
T ss_pred             hcchhheehhhhhcCcccceeEEEE-ecCceEEEEeecCcccchhHHHHHHHHHHHHhcc------CCCCeeEEEeeee-
Confidence            3456778899999999999999997 3447999999988754  3457899999999999      7888999999999 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .++.+|+||||+ .|+|.+++..+....+.......|+.||+.|++||.+ +++|||||-+.|+|++.         
T Consensus       606 ---~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes-~nfVHrd~a~rNcLv~~---------  672 (807)
T KOG1094|consen  606 ---QDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLES-LNFVHRDLATRNCLVDG---------  672 (807)
T ss_pred             ---cCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHh-hchhhccccccceeecC---------
Confidence               447899999999 9999999987654445666777899999999999999 69999999999999966         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       673 --------------------------------------------------------------------------------  672 (807)
T KOG1094|consen  673 --------------------------------------------------------------------------------  672 (807)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc-----CCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-----TNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                 ++++||+|||+++......     ...+-...|||||.++..++++++|+|++
T Consensus       673 ---------------------------e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWaf  725 (807)
T KOG1094|consen  673 ---------------------------EFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAF  725 (807)
T ss_pred             ---------------------------cccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhh
Confidence                                       6789999999998655432     23345678999999999999999999999


Q ss_pred             HHHHHHHHh--CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          350 ACICFELAT--GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       350 G~il~ellt--G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |+++||+++  ..-||...+      +.+.....-.++...+..                                  .-
T Consensus       726 gvTlwE~~~~C~e~Py~~lt------~e~vven~~~~~~~~~~~----------------------------------~~  765 (807)
T KOG1094|consen  726 GVTLWEVFMLCREQPYSQLT------DEQVVENAGEFFRDQGRQ----------------------------------VV  765 (807)
T ss_pred             HHHHHHHHHHHhhCchhhhh------HHHHHHhhhhhcCCCCcc----------------------------------ee
Confidence            999999865  568886443      222222222222111111                                  11


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +..|.-++..+.+||.+||..|-.+||+.+++-.
T Consensus       766 l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~  799 (807)
T KOG1094|consen  766 LSRPPACPQGLYELMLRCWRRESEQRPSFEQLHL  799 (807)
T ss_pred             ccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHH
Confidence            2234556778889999999999999999999854

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-34  Score=291.90  Aligned_cols=247  Identities=21%  Similarity=0.244  Sum_probs=202.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCC-C--eEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQT-S--HYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~-~--~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .++.++.++||+|.||.||+|.++.. |  ..||+|+++....  ....|++|+.+|.+|      .|+|+|++|++..+
T Consensus       109 ee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L------~H~hliRLyGvVl~  182 (1039)
T KOG0199|consen  109 EEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKL------QHPHLIRLYGVVLD  182 (1039)
T ss_pred             HHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhc------cCcceeEEeeeecc
Confidence            45677889999999999999987664 3  5799999886543  467899999999999      78889999999884


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                           ..+.||||++ .|+|++.+.......|.......|+.||+.|+.||.++ ++|||||-..|+||..         
T Consensus       183 -----qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLesk-rlvHRDLAARNlllas---------  247 (1039)
T KOG0199|consen  183 -----QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESK-RLVHRDLAARNLLLAS---------  247 (1039)
T ss_pred             -----chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhhhheecc---------
Confidence                 5789999999 99999999876666789999999999999999999998 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       248 --------------------------------------------------------------------------------  247 (1039)
T KOG0199|consen  248 --------------------------------------------------------------------------------  247 (1039)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCC------CCCCccCChhhcCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDI------QTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~------gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 ...|||||||+.+........++      -...|||||.+....++.++|+|+
T Consensus       248 ---------------------------prtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWm  300 (1039)
T KOG0199|consen  248 ---------------------------PRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWM  300 (1039)
T ss_pred             ---------------------------cceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhh
Confidence                                       45699999999987654422222      234699999999999999999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          349 FACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       349 lG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      +||++|||++ |+-||.+...      .+.+..|-                                         -.+.
T Consensus       301 yGVTiWEMFtyGEePW~G~~g------~qIL~~iD-----------------------------------------~~er  333 (1039)
T KOG0199|consen  301 YGVTIWEMFTYGEEPWVGCRG------IQILKNID-----------------------------------------AGER  333 (1039)
T ss_pred             hhhhHHhhhccCCCCCCCCCH------HHHHHhcc-----------------------------------------cccc
Confidence            9999999998 6799987652      22222111                                         1123


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      +.-+..++.++.+++..||..+|++|||...|.+.
T Consensus       334 LpRPk~csedIY~imk~cWah~paDRptFsair~~  368 (1039)
T KOG0199|consen  334 LPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIRED  368 (1039)
T ss_pred             CCCCCCChHHHHHHHHHhccCCccccccHHHHHHh
Confidence            34566788999999999999999999999888543

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-33  Score=283.72  Aligned_cols=246  Identities=23%  Similarity=0.350  Sum_probs=206.7

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      .+..+..+||-|.||.||.+.++.-...||+|.++......+.|+.|..+|+.|      .|||+|++++++...    .
T Consensus       267 tdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKei------kHpNLVqLLGVCT~E----p  336 (1157)
T KOG4278|consen  267 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLVQLLGVCTHE----P  336 (1157)
T ss_pred             hheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhh------cCccHHHHhhhhccC----C
Confidence            345667899999999999999999999999999999998899999999999999      788999999999954    6


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      .+|||.||| .|+|++++.......++.-....++.||..|+.||..+ ++|||||-..|+|+..               
T Consensus       337 PFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk-nFIHRDLAARNCLVgE---------------  400 (1157)
T KOG4278|consen  337 PFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLVGE---------------  400 (1157)
T ss_pred             CeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhhccccc---------------
Confidence            799999999 99999999887777788888899999999999999997 9999999999999965               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       401 --------------------------------------------------------------------------------  400 (1157)
T KOG4278|consen  401 --------------------------------------------------------------------------------  400 (1157)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccc-cccCCCCC---CCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-KQFTNDIQ---TRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-~~~~~~~g---t~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                           +..||++|||+++... ...+...|   ...|.|||.+....++.++|||+|||+|||+
T Consensus       401 ---------------------nhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEI  459 (1157)
T KOG4278|consen  401 ---------------------NHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEI  459 (1157)
T ss_pred             ---------------------cceEEeeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHH
Confidence                                 4569999999998643 34555555   4569999999998999999999999999999


Q ss_pred             Hh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          357 AT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       357 lt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      .| |..||++..       ..++   +.++..-                                     -...-+..++
T Consensus       460 ATYGMsPYPGid-------lSqV---Y~LLEkg-------------------------------------yRM~~PeGCP  492 (1157)
T KOG4278|consen  460 ATYGMSPYPGID-------LSQV---YGLLEKG-------------------------------------YRMDGPEGCP  492 (1157)
T ss_pred             HhcCCCCCCCcc-------HHHH---HHHHhcc-------------------------------------ccccCCCCCC
Confidence            77 888997643       2222   2221100                                     0113356778


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +.+.+|++.||+|+|..||+..|+-+
T Consensus       493 pkVYeLMraCW~WsPsDRPsFaeiHq  518 (1157)
T KOG4278|consen  493 PKVYELMRACWNWSPSDRPSFAEIHQ  518 (1157)
T ss_pred             HHHHHHHHHHhcCCcccCccHHHHHH
Confidence            89999999999999999999988643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-32  Score=318.25  Aligned_cols=254  Identities=15%  Similarity=0.228  Sum_probs=182.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      ..|.....||+|+||.||+|.+..++..||+|.+.....   ....|+++++++      +|||||++++++..    ..
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~l~~l------~HpnIv~~~~~~~~----~~  756 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS---IPSSEIADMGKL------QHPNIVKLIGLCRS----EK  756 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc---ccHHHHHHHhhC------CCCCcceEEEEEEc----CC
Confidence            356677899999999999999999999999998865432   223568888888      78999999999984    46


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH---RELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH---~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ..|+||||+ +++|.+++.     .+++..+..|+.||+.||+|||   +. +|+||||||+||+++..           
T Consensus       757 ~~~lv~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~L~yLH~~~~~-~iiH~dlkp~Nil~~~~-----------  819 (968)
T PLN00113        757 GAYLIHEYIEGKNLSEVLR-----NLSWERRRKIAIGIAKALRFLHCRCSP-AVVVGNLSPEKIIIDGK-----------  819 (968)
T ss_pred             CCEEEEeCCCCCcHHHHHh-----cCCHHHHHHHHHHHHHHHHHhccCCCC-CeecCCCCHHhEEECCC-----------
Confidence            789999999 899999885     2788999999999999999999   54 99999999999999541           


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       820 --------------------------------------------------------------------------------  819 (968)
T PLN00113        820 --------------------------------------------------------------------------------  819 (968)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                               ...++. ||.+.... ......||+.|+|||++.+..|+.++|||||||++|||+
T Consensus       820 -------------------------~~~~~~-~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~  872 (968)
T PLN00113        820 -------------------------DEPHLR-LSLPGLLC-TDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELL  872 (968)
T ss_pred             -------------------------CceEEE-eccccccc-cCCCccccccccCcccccCCCCCcccchhhHHHHHHHHH
Confidence                                     122222 33332211 122347899999999999989999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|+.||......    ..................         .+                 .................+
T Consensus       873 tg~~p~~~~~~~----~~~~~~~~~~~~~~~~~~---------~~-----------------~~~~~~~~~~~~~~~~~~  922 (968)
T PLN00113        873 TGKSPADAEFGV----HGSIVEWARYCYSDCHLD---------MW-----------------IDPSIRGDVSVNQNEIVE  922 (968)
T ss_pred             hCCCCCCcccCC----CCcHHHHHHHhcCccchh---------he-----------------eCccccCCCCccHHHHHH
Confidence            999999533211    111111000000000000         00                 000011111222334457


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      +.+|+.+||+.||.+|||+.|+++.
T Consensus       923 ~~~l~~~Cl~~~P~~RPt~~evl~~  947 (968)
T PLN00113        923 VMNLALHCTATDPTARPCANDVLKT  947 (968)
T ss_pred             HHHHHHhhCcCCchhCcCHHHHHHH
Confidence            8899999999999999999999875

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.98  E-value=9.6e-34  Score=288.93  Aligned_cols=256  Identities=24%  Similarity=0.357  Sum_probs=207.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..+|.++.++|+|+||.||+|+++.+++..|+|+++.... ...-...|+-+++.+      .|||||.+++.+.    .
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc------~h~nivay~gsyl----r   83 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDC------RHPNIVAYFGSYL----R   83 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecC------CCcChHHHHhhhh----h
Confidence            4789999999999999999999999999999999998753 345567899999888      7888999999988    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....+|+|||| +|+|.+...  ..+.+++-++...++..+.+|+|||+. |=+|||||-.|||+++             
T Consensus        84 ~dklwicMEycgggslQdiy~--~TgplselqiayvcRetl~gl~ylhs~-gk~hRdiKGanilltd-------------  147 (829)
T KOG0576|consen   84 RDKLWICMEYCGGGSLQDIYH--VTGPLSELQIAYVCRETLQGLKYLHSQ-GKIHRDIKGANILLTD-------------  147 (829)
T ss_pred             hcCcEEEEEecCCCcccceee--ecccchhHHHHHHHhhhhccchhhhcC-Ccccccccccceeecc-------------
Confidence            57899999999 778877653  556699999999999999999999996 9999999999999976             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (829)
T KOG0576|consen  148 --------------------------------------------------------------------------------  147 (829)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhc---CCCCCCcchhHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLL---GSKYSTPADLWSFACI  352 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~---~~~~~~~~DiWSlG~i  352 (530)
                                             .+.+||+|||.+....   ....++.||++|||||+-.   ...|+..+|||++|++
T Consensus       148 -----------------------~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~git  204 (829)
T KOG0576|consen  148 -----------------------EGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGIT  204 (829)
T ss_pred             -----------------------cCceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccc
Confidence                                   5679999999985432   2345678999999999864   4469999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      ..||-.-.+|...       ....+...++..-|..|.....                                    ..
T Consensus       205 Aiel~eLqpplfd-------lhpmr~l~LmTkS~~qpp~lkD------------------------------------k~  241 (829)
T KOG0576|consen  205 AIELGELQPPLFD-------LHPMRALFLMTKSGFQPPTLKD------------------------------------KT  241 (829)
T ss_pred             hhhhhhcCCcccc-------cchHHHHHHhhccCCCCCcccC------------------------------------Cc
Confidence            9999988877521       1222222333333333322211                                    12


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ..++.+-+|++.+|..+|.+||+++.+|.|||....
T Consensus       242 kws~~fh~fvK~altknpKkRptaeklL~h~fvs~~  277 (829)
T KOG0576|consen  242 KWSEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQT  277 (829)
T ss_pred             cchHHHHHHHHHHhcCCCccCCChhhheeceeeccc
Confidence            335778899999999999999999999999998754

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2e-31  Score=261.27  Aligned_cols=271  Identities=21%  Similarity=0.308  Sum_probs=200.1

Q ss_pred             CCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcc
Q 045988           26 RRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKC  105 (530)
Q Consensus        26 ~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~  105 (530)
                      -.|.-.|..+..++ ..+.++++.||+|.||.||+|.  .-|..||+|++...+  ...+.+|.+|.....-    .|+|
T Consensus       196 GSGSGlplLVQRTi-arqI~L~e~IGkGRyGEVwrG~--wrGe~VAVKiF~srd--E~SWfrEtEIYqTvmL----RHEN  266 (513)
T KOG2052|consen  196 GSGSGLPLLVQRTI-ARQIVLQEIIGKGRFGEVWRGR--WRGEDVAVKIFSSRD--ERSWFRETEIYQTVML----RHEN  266 (513)
T ss_pred             CCCCCchhHhHHhh-hheeEEEEEecCccccceeecc--ccCCceEEEEecccc--hhhhhhHHHHHHHHHh----ccch
Confidence            34455677777888 6889999999999999999995  568899999998765  5678899999887653    7889


Q ss_pred             eeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh-------CCceeccCC
Q 045988          106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRE-------LSIIHTDLK  177 (530)
Q Consensus       106 Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~-------~gIvHrDIK  177 (530)
                      |+.++..-.-+...-..++||.+|- .|+|++++..   ..++.+...+++..++.||++||..       ..|.|||||
T Consensus       267 ILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r---~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlK  343 (513)
T KOG2052|consen  267 ILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNR---NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLK  343 (513)
T ss_pred             hhhhhhccccCCCceEEEEEeeecccCCcHHHHHhh---ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccc
Confidence            9999887544333346899999999 9999999975   3499999999999999999999963       459999999


Q ss_pred             CCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCC
Q 045988          178 PENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAE  257 (530)
Q Consensus       178 p~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (530)
                      ..|||+.+                                                                        
T Consensus       344 SKNILVKk------------------------------------------------------------------------  351 (513)
T KOG2052|consen  344 SKNILVKK------------------------------------------------------------------------  351 (513)
T ss_pred             cccEEEcc------------------------------------------------------------------------
Confidence            99999955                                                                        


Q ss_pred             CCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-------cccCCCCCCCCcc
Q 045988          258 PNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-------KQFTNDIQTRQYR  330 (530)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-------~~~~~~~gt~~y~  330 (530)
                                                                  ++...|+|+|+|....       ...+..+||..||
T Consensus       352 --------------------------------------------n~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYM  387 (513)
T KOG2052|consen  352 --------------------------------------------NGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYM  387 (513)
T ss_pred             --------------------------------------------CCcEEEeeceeeEEecccCCcccCCCCCccceeecc
Confidence                                                        5789999999996432       2356789999999


Q ss_pred             CChhhcCCC----C-C-CcchhHHHHHHHHHHHhC----------CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhc
Q 045988          331 CPEVLLGSK----Y-S-TPADLWSFACICFELATG----------DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAF  394 (530)
Q Consensus       331 aPE~l~~~~----~-~-~~~DiWSlG~il~elltG----------~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  394 (530)
                      |||++....    + + ..+||||||.++||++..          .+||...-+.+  ...+.+..++-+-...|     
T Consensus       388 APEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~D--Ps~eeMrkVVCv~~~RP-----  460 (513)
T KOG2052|consen  388 APEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSD--PSFEEMRKVVCVQKLRP-----  460 (513)
T ss_pred             ChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCC--CCHHHHhcceeecccCC-----
Confidence            999997543    1 2 347999999999999864          46665433211  12222222221111000     


Q ss_pred             CCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHh
Q 045988          395 GGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL  460 (530)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL  460 (530)
                                                  .....+ .+...-..+..|++.||..||.-|.||--+-
T Consensus       461 ----------------------------~ipnrW-~s~~~l~~m~klMkeCW~~Np~aRltALriK  497 (513)
T KOG2052|consen  461 ----------------------------NIPNRW-KSDPALRVMAKLMKECWYANPAARLTALRIK  497 (513)
T ss_pred             ----------------------------CCCccc-ccCHHHHHHHHHHHHhhcCCchhhhHHHHHH
Confidence                                        000000 1122335677899999999999999985443

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-32  Score=253.18  Aligned_cols=259  Identities=19%  Similarity=0.231  Sum_probs=195.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .+.|.|.+.||+|.||.+-+|+++.+...++||.+.........+.+|..---.|.     .|.||+.-|++-..   ..
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls-----~H~hIi~tY~vaFq---t~   94 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLS-----PHQHIIDTYEVAFQ---TS   94 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeec-----cchhhhHHHHHHhh---cC
Confidence            47899999999999999999999999999999998887777788888887655554     68889988876332   44


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ++++++|||+ -|+|.+-+.   ..++-+...+.++.||++||.|||++ ++||||||.+||||....            
T Consensus        95 d~YvF~qE~aP~gdL~snv~---~~GigE~~~K~v~~ql~SAi~fMHsk-nlVHRdlK~eNiLif~~d------------  158 (378)
T KOG1345|consen   95 DAYVFVQEFAPRGDLRSNVE---AAGIGEANTKKVFAQLLSAIEFMHSK-NLVHRDLKAENILIFDAD------------  158 (378)
T ss_pred             ceEEEeeccCccchhhhhcC---cccccHHHHHHHHHHHHHHHHHhhcc-chhhcccccceEEEecCC------------
Confidence            6899999999 889988774   35588999999999999999999998 999999999999996621            


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (378)
T KOG1345|consen  159 --------------------------------------------------------------------------------  158 (378)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCC-----CCCcchhHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSK-----YSTPADLWSFACICF  354 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~-----~~~~~DiWSlG~il~  354 (530)
                                            ...|||||||.+..........--+..|.+||++....     ..+..|||.||+++|
T Consensus       159 ----------------------f~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f  216 (378)
T KOG1345|consen  159 ----------------------FYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFF  216 (378)
T ss_pred             ----------------------ccEEEeeecccccccCceehhhhhhcccCCcHHHhhccccceEecccccchheeeeee
Confidence                                  35799999999976543322223366799999886432     477899999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      .+|+|++||...+..    +.....-+.-.-+..|                                    ..+..-...
T Consensus       217 ~cltG~~PWQka~~~----d~~Y~~~~~w~~rk~~------------------------------------~~P~~F~~f  256 (378)
T KOG1345|consen  217 YCLTGKFPWQKASIM----DKPYWEWEQWLKRKNP------------------------------------ALPKKFNPF  256 (378)
T ss_pred             eeecCCCcchhhhcc----CchHHHHHHHhcccCc------------------------------------cCchhhccc
Confidence            999999999743311    1111111111111110                                    000111234


Q ss_pred             HHHHHHHHhhccCcCCCCC---cCHHHHhcCCCC
Q 045988          435 ANDMADFLVPILDFVPEKR---PTAAQCLTHPWI  465 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~R---pta~elL~hp~f  465 (530)
                      ++.+..+.++-|..+|.+|   .+++.....-|.
T Consensus       257 s~~a~r~Fkk~lt~~~~drcki~~~kk~rk~~w~  290 (378)
T KOG1345|consen  257 SEKALRLFKKSLTPRFKDRCKIWTAKKMRKCLWK  290 (378)
T ss_pred             CHHHHHHHHHhcCCcccccchhHHHHHHHHHHHH
Confidence            5678899999999999999   667777777775

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=6.4e-32  Score=266.60  Aligned_cols=268  Identities=22%  Similarity=0.309  Sum_probs=194.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ....++.+.||+|.||.||+|.  -+++.||||++....  ...+..|-+|.+....    .|+||++++..-.......
T Consensus       209 l~pl~l~eli~~Grfg~V~Kaq--L~~~~VAVKifp~~~--kqs~~~Ek~Iy~lp~m----~h~nIl~Fi~~ekr~t~~~  280 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQ--LDNRLVAVKIFPEQE--KQSFQNEKNIYSLPGM----KHENILQFIGAEKRGTADR  280 (534)
T ss_pred             CCchhhHHHhhcCccceeehhh--ccCceeEEEecCHHH--HHHHHhHHHHHhccCc----cchhHHHhhchhccCCccc
Confidence            3567889999999999999994  567999999998754  6778889998877643    8999999998876543345


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh--------CCceeccCCCCcEEEeeccCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRE--------LSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~--------~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      ..++||++|. .|+|.++++.+.   +++....+++.-|+.||+|||+.        ..|+|||||..||||..      
T Consensus       281 ~eywLVt~fh~kGsL~dyL~~nt---isw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~------  351 (534)
T KOG3653|consen  281 MEYWLVTEFHPKGSLCDYLKANT---ISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKN------  351 (534)
T ss_pred             cceeEEeeeccCCcHHHHHHhcc---ccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEcc------
Confidence            6899999999 999999997443   89999999999999999999973        46999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       352 --------------------------------------------------------------------------------  351 (534)
T KOG3653|consen  352 --------------------------------------------------------------------------------  351 (534)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcCCC-CC----
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLGSK-YS----  341 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~~~-~~----  341 (530)
                                                    +++..|+|||+|.....     .....+||..|||||++.+.. +.    
T Consensus       352 ------------------------------DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~A  401 (534)
T KOG3653|consen  352 ------------------------------DLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDA  401 (534)
T ss_pred             ------------------------------CCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHH
Confidence                                          67899999999976432     234479999999999998753 22    


Q ss_pred             -CcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 -TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 -~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                       .+.||||+|.+||||++++..+.+....++..      -+...+|..|.--..+.              .+.....   
T Consensus       402 fkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yql------pfe~evG~hPt~e~mq~--------------~VV~kK~---  458 (534)
T KOG3653|consen  402 FKRIDVYAMGLVLWEIASRCTDADPGPVPEYQL------PFEAEVGNHPTLEEMQE--------------LVVRKKQ---  458 (534)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCCCCCcccC------chhHHhcCCCCHHHHHH--------------HHHhhcc---
Confidence             24799999999999999988775433333321      12223344332100000              0000000   


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHH
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQC  459 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~el  459 (530)
                      ++.+...+.- ......+++.|..||..||+.|.||.=+
T Consensus       459 RP~~p~~W~~-h~~~~~l~et~EeCWDhDaeARLTA~Cv  496 (534)
T KOG3653|consen  459 RPKIPDAWRK-HAGMAVLCETIEECWDHDAEARLTAGCV  496 (534)
T ss_pred             CCCChhhhhc-CccHHHHHHHHHHHcCCchhhhhhhHHH
Confidence            0000000000 0234668899999999999999998533

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.97  E-value=1e-31  Score=278.26  Aligned_cols=252  Identities=19%  Similarity=0.305  Sum_probs=207.9

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCC---eEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTS---HYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~---~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      ...|....-.|.++||.|.||.|++|+.+..|   ..||||.++..  ......|+.|..||-++      +||||+++.
T Consensus       623 akEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQF------dHPNIIrLE  696 (996)
T KOG0196|consen  623 AKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQF------DHPNIIRLE  696 (996)
T ss_pred             hhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccC------CCCcEEEEE
Confidence            34455567789999999999999999988776   58999998865  34467789999999998      899999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ++..    ....+.||.||| .|.|..++.... +.++..++.-+++.|+.|+.||-. +|+|||||-..|||+..    
T Consensus       697 GVVT----ks~PvMIiTEyMENGsLDsFLR~~D-GqftviQLVgMLrGIAsGMkYLsd-m~YVHRDLAARNILVNs----  766 (996)
T KOG0196|consen  697 GVVT----KSKPVMIITEYMENGSLDSFLRQND-GQFTVIQLVGMLRGIASGMKYLSD-MNYVHRDLAARNILVNS----  766 (996)
T ss_pred             EEEe----cCceeEEEhhhhhCCcHHHHHhhcC-CceEeehHHHHHHHHHHHhHHHhh-cCchhhhhhhhheeecc----
Confidence            9998    557899999999 999999998655 448889999999999999999998 69999999999999955    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       767 --------------------------------------------------------------------------------  766 (996)
T KOG0196|consen  767 --------------------------------------------------------------------------------  766 (996)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc----CCCCC--CCCccCChhhcCCCCCCc
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF----TNDIQ--TRQYRCPEVLLGSKYSTP  343 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~----~~~~g--t~~y~aPE~l~~~~~~~~  343 (530)
                                                      +..+|++|||+++......    ++..|  ...|.|||.+...+++.+
T Consensus       767 --------------------------------nLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsA  814 (996)
T KOG0196|consen  767 --------------------------------NLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSA  814 (996)
T ss_pred             --------------------------------ceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCch
Confidence                                            5789999999998764332    22233  457999999999999999


Q ss_pred             chhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchh
Q 045988          344 ADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       344 ~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      +||||+|++|||.++ |.-||=..+      +.+.+..|..-++.+                                  
T Consensus       815 SDVWSyGIVmWEVmSyGERPYWdmS------NQdVIkaIe~gyRLP----------------------------------  854 (996)
T KOG0196|consen  815 SDVWSYGIVMWEVMSYGERPYWDMS------NQDVIKAIEQGYRLP----------------------------------  854 (996)
T ss_pred             hhccccceEEEEecccCCCcccccc------hHHHHHHHHhccCCC----------------------------------
Confidence            999999999999765 888874333      455555554433322                                  


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                             .|.+++..+..|+..||++|-..||+..||+++
T Consensus       855 -------pPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~  887 (996)
T KOG0196|consen  855 -------PPMDCPAALYQLMLDCWQKDRNRRPKFAQIVST  887 (996)
T ss_pred             -------CCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence                   345678899999999999999999999999873

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=4.5e-29  Score=271.03  Aligned_cols=249  Identities=22%  Similarity=0.395  Sum_probs=194.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeC----C---CCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDT----Q---TSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~----~---~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      ..+..+.+.||+|+||.||+|.-.    .   ....||+|+.+....  ....+..|+++|+.+.     .|+||+.+++
T Consensus       295 ~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g-----~H~niv~llG  369 (609)
T KOG0200|consen  295 RENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELG-----KHPNIVNLLG  369 (609)
T ss_pred             hhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhc-----CCcchhhhee
Confidence            445577789999999999999643    1   156899999886543  3567889999999996     7999999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhc------c--------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD------Y--------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDL  176 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~------~--------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDI  176 (530)
                      .+..    ...+++|+||+ .|+|.+++...+      .        ..++..+...+++||+.|++||+++ ++|||||
T Consensus       370 ~~t~----~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~-~~vHRDL  444 (609)
T KOG0200|consen  370 ACTQ----DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV-PCVHRDL  444 (609)
T ss_pred             eecc----CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC-Cccchhh
Confidence            9984    57899999999 999999997655      0        1288899999999999999999997 9999999


Q ss_pred             CCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCC
Q 045988          177 KPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDA  256 (530)
Q Consensus       177 Kp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (530)
                      -..|||+..                                                                       
T Consensus       445 AaRNVLi~~-----------------------------------------------------------------------  453 (609)
T KOG0200|consen  445 AARNVLITK-----------------------------------------------------------------------  453 (609)
T ss_pred             hhhhEEecC-----------------------------------------------------------------------
Confidence            999999965                                                                       


Q ss_pred             CCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-c---CCCCC--CCCcc
Q 045988          257 EPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-F---TNDIQ--TRQYR  330 (530)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~---~~~~g--t~~y~  330 (530)
                                                                   +..+|++|||+|+..... .   ....|  ...||
T Consensus       454 ---------------------------------------------~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWm  488 (609)
T KOG0200|consen  454 ---------------------------------------------NKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWM  488 (609)
T ss_pred             ---------------------------------------------CCEEEEccccceeccCCCCceEecCCCCccceeec
Confidence                                                         457999999999853322 1   11222  33599


Q ss_pred             CChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcc
Q 045988          331 CPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL  409 (530)
Q Consensus       331 aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  409 (530)
                      |||.+....|+.++||||+||+|||+++ |..||++..     ...+.+..+  .-|                       
T Consensus       489 ApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~-----~~~~l~~~l--~~G-----------------------  538 (609)
T KOG0200|consen  489 APESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP-----PTEELLEFL--KEG-----------------------  538 (609)
T ss_pred             CHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC-----cHHHHHHHH--hcC-----------------------
Confidence            9999999899999999999999999998 778886421     011111110  000                       


Q ss_pred             ccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          410 RHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                      .....|..+++++.++++.||+.+|++||+..++..
T Consensus       539 ----------------~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~  574 (609)
T KOG0200|consen  539 ----------------NRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVE  574 (609)
T ss_pred             ----------------CCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence                            012334556788999999999999999999988875

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2e-30  Score=269.52  Aligned_cols=246  Identities=23%  Similarity=0.299  Sum_probs=198.1

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCC----eEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTS----HYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~----~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      +....+..++||+|+||+||+|.....|    -+||||++.....  ....++.|.-+|..|      +|||+++++++.
T Consensus       694 kEtelkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masl------dHpnl~RLLgvc  767 (1177)
T KOG1025|consen  694 KETELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASL------DHPNLLRLLGVC  767 (1177)
T ss_pred             hhhhhhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcC------CCchHHHHhhhc
Confidence            3445667899999999999999876655    4789998876654  367888999999999      899999999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      ..+     .+.||++|+ .|.|.++++.++ ..+.......|++||++|+.|||.+ ++|||||-..|||+..       
T Consensus       768 ~~s-----~~qlvtq~mP~G~LlDyvr~hr-~~igsq~lLnw~~QIAkgM~YLe~q-rlVHrdLaaRNVLVks-------  833 (1177)
T KOG1025|consen  768 MLS-----TLQLVTQLMPLGCLLDYVREHR-DNIGSQDLLNWCYQIAKGMKYLEEQ-RLVHRDLAARNVLVKS-------  833 (1177)
T ss_pred             ccc-----hHHHHHHhcccchHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHhc-chhhhhhhhhheeecC-------
Confidence            864     488999999 999999998755 3488899999999999999999997 9999999999999955       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       834 --------------------------------------------------------------------------------  833 (1177)
T KOG1025|consen  834 --------------------------------------------------------------------------------  833 (1177)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCC--CCCccCChhhcCCCCCCcchhH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQ--TRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~g--t~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                   ...+|+.|||+|+.....   .....|  .+.|||-|.+....|+.++|||
T Consensus       834 -----------------------------P~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVW  884 (1177)
T KOG1025|consen  834 -----------------------------PNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVW  884 (1177)
T ss_pred             -----------------------------CCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhh
Confidence                                         456999999999875433   222222  4579999999999999999999


Q ss_pred             HHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          348 SFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       348 SlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |+||++|||+| |.-|+.+.+..+          |-.++.                  .                   -+
T Consensus       885 sfGVtiWElmTFGa~Py~gi~~~e----------I~dlle------------------~-------------------ge  917 (1177)
T KOG1025|consen  885 SFGVTIWELMTFGAKPYDGIPAEE----------IPDLLE------------------K-------------------GE  917 (1177)
T ss_pred             hhhhhHHHHHhcCCCccCCCCHHH----------hhHHHh------------------c-------------------cc
Confidence            99999999988 888887655221          111110                  0                   01


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ++..++..+-++.-++.+||..|+..||+++++..
T Consensus       918 RLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~  952 (1177)
T KOG1025|consen  918 RLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAE  952 (1177)
T ss_pred             cCCCCCCccHHHHHHHHHHhccCcccCccHHHHHH
Confidence            23445667889999999999999999999998875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=3.7e-30  Score=289.92  Aligned_cols=217  Identities=17%  Similarity=0.187  Sum_probs=150.0

Q ss_pred             cceeEecceeeecCC---CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          104 KCVVKLLDHFKHSGP---NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~---~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                      .||+.++++|...+.   ....++++||+++++|.+++... ...+++.+++.|++||+.||+|||++ |||||||||+|
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~-gIvHrDlKP~N  110 (793)
T PLN00181         33 DYVRSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDNP-DRSVDAFECFHVFRQIVEIVNAAHSQ-GIVVHNVRPSC  110 (793)
T ss_pred             HHHHHhhcccCCccccccccchhhhhhccCCccHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHhC-CeeeccCCchh
Confidence            467888888743321   22468889999999999999642 34599999999999999999999997 99999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      |||.....-                    .+.+++.                                            
T Consensus       111 iLl~~~~~~--------------------k~~d~~~--------------------------------------------  126 (793)
T PLN00181        111 FVMSSFNHV--------------------SFIESAS--------------------------------------------  126 (793)
T ss_pred             EEEcccCcE--------------------EEeeccc--------------------------------------------
Confidence            999541100                    0000000                                            


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-------------------ccC
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-------------------QFT  321 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-------------------~~~  321 (530)
                                +.      ..                 .......+|++|||+++....                   ...
T Consensus       127 ----------~~------~~-----------------~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (793)
T PLN00181        127 ----------CS------DS-----------------GSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQI  173 (793)
T ss_pred             ----------cC------cc-----------------cccccCcccccccccccccccccccchhhhhccccCCCccccc
Confidence                      00      00                 000135689999999864210                   011


Q ss_pred             CCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccc
Q 045988          322 NDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRD  401 (530)
Q Consensus       322 ~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  401 (530)
                      ..+||++|||||++.+..|+.++|||||||+||||++|.+||...        ...+..+...  ..|..          
T Consensus       174 ~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~--------~~~~~~~~~~--~~~~~----------  233 (793)
T PLN00181        174 LAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEK--------SRTMSSLRHR--VLPPQ----------  233 (793)
T ss_pred             ccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhH--------HHHHHHHHHh--hcChh----------
Confidence            246899999999999999999999999999999999998887321        0111111000  00000          


Q ss_pred             cccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          402 FFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                                                   .....+...+++.+||++||.+||++.|+|+||||...
T Consensus       234 -----------------------------~~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~~  271 (793)
T PLN00181        234 -----------------------------ILLNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEP  271 (793)
T ss_pred             -----------------------------hhhcCHHHHHHHHHhCCCChhhCcChHHHhhchhhhhh
Confidence                                         00112346689999999999999999999999999864

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.96  E-value=3.8e-28  Score=227.61  Aligned_cols=208  Identities=40%  Similarity=0.623  Sum_probs=178.5

Q ss_pred             eccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEE
Q 045988           50 LGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVF  127 (530)
Q Consensus        50 LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVm  127 (530)
                      ||+|++|.||++....+++.+++|++.....  ....+.+|+.+++.+      .|++|+++++++..    ....+++|
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l------~~~~i~~~~~~~~~----~~~~~~~~   70 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKL------NHPNIVKLYGVFED----ENHLYLVM   70 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhc------CCCCeeeEeeeeec----CCeEEEEE
Confidence            6899999999999988899999999887654  246788999999999      56789999999984    37899999


Q ss_pred             ecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCcccccc
Q 045988          128 EYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKK  206 (530)
Q Consensus       128 E~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~  206 (530)
                      |++ +++|.+++.... ..++...+..++.+++.+|++||++ |++|+||+|.||++...                    
T Consensus        71 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~-~~~H~dl~~~ni~~~~~--------------------  128 (215)
T cd00180          71 EYCEGGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSN-GIIHRDLKPENILLDSD--------------------  128 (215)
T ss_pred             ecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHhhEEEeCC--------------------
Confidence            999 599999987442 3489999999999999999999997 99999999999999541                    


Q ss_pred             ccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccC
Q 045988          207 DKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDC  286 (530)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (530)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (215)
T cd00180         129 --------------------------------------------------------------------------------  128 (215)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHHHHHhCCCC
Q 045988          287 KRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDVL  362 (530)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~elltG~~P  362 (530)
                                     ...++|+|||.+......   .....+...|++||.+... .++.+.|+|+||+++|+|      
T Consensus       129 ---------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l------  187 (215)
T cd00180         129 ---------------NGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL------  187 (215)
T ss_pred             ---------------CCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH------
Confidence                           246899999999765443   3445678899999999877 788999999999999999      


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHH
Q 045988          363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFL  442 (530)
Q Consensus       363 F~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl  442 (530)
                                                                                               ..+.++|
T Consensus       188 -------------------------------------------------------------------------~~~~~~l  194 (215)
T cd00180         188 -------------------------------------------------------------------------PELKDLI  194 (215)
T ss_pred             -------------------------------------------------------------------------HHHHHHH
Confidence                                                                                     0356899


Q ss_pred             hhccCcCCCCCcCHHHHhcCC
Q 045988          443 VPILDFVPEKRPTAAQCLTHP  463 (530)
Q Consensus       443 ~~mL~~dP~~Rpta~elL~hp  463 (530)
                      .+||..||.+||++.++++|+
T Consensus       195 ~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         195 RKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             HHHhhCCcccCcCHHHHhhCC
Confidence            999999999999999999985

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.95  E-value=2.1e-27  Score=226.16  Aligned_cols=193  Identities=36%  Similarity=0.526  Sum_probs=165.2

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      |.+.+.||.|++|.||+|.+..+++.+|+|.+.....  ....+.+|++.++++      .|+|++++++.+.    ...
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~------~~~~i~~~~~~~~----~~~   70 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKL------KHPNIVKLYGVFE----DPE   70 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhC------CCCChhhheeeee----cCC
Confidence            6788999999999999999998899999999876543  366788899999998      6788999999887    447


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ..++++|++ +++|.+++..... .+++..+..++.|++.+|.+||.+ +++|+||+|.||+++.               
T Consensus        71 ~~~~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~di~~~ni~v~~---------------  133 (225)
T smart00221       71 PLYLVMEYCEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLHSL-GIVHRDLKPENILLGM---------------  133 (225)
T ss_pred             ceEEEEeccCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC---------------
Confidence            899999999 6699999874332 178999999999999999999997 9999999999999955               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (225)
T smart00221      134 --------------------------------------------------------------------------------  133 (225)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhh-cCCCCCCcchhHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVL-LGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l-~~~~~~~~~DiWSlG~il~e  355 (530)
                                           ...++|+|||.+......    .....++..|++||.+ ....++.++|+|+||+++|+
T Consensus       134 ---------------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~  192 (225)
T smart00221      134 ---------------------DGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYE  192 (225)
T ss_pred             ---------------------CCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHH
Confidence                                 356899999998765433    2455778899999999 66678889999999999999


Q ss_pred             HHhCCCCCC
Q 045988          356 LATGDVLFD  364 (530)
Q Consensus       356 lltG~~PF~  364 (530)
                      |++|++||.
T Consensus       193 l~~g~~pf~  201 (225)
T smart00221      193 LLWGPEPFS  201 (225)
T ss_pred             HHHCCCCcc
Confidence            999999995

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.94  E-value=6.2e-27  Score=212.92  Aligned_cols=208  Identities=22%  Similarity=0.311  Sum_probs=173.2

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +.+.+..++|.++++||+|+||.+|+|....+|..||||+...... ...+..|.++.+.|++..     .|..+..++.
T Consensus         8 ~~~~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~-hpqL~yEskvY~iL~~g~-----GiP~i~~y~~   81 (341)
T KOG1163|consen    8 LEELIVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK-HPQLLYESKVYRILQGGV-----GIPHIRHYGT   81 (341)
T ss_pred             hhhheeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC-CcchhHHHHHHHHhccCC-----CCchhhhhcc
Confidence            3445667899999999999999999999999999999999877654 456778999999998654     3555555555


Q ss_pred             ecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                          ++.+-.+||+++|.+|.++++.. .+.++..++.-++-|++.-|+|+|.+ ++|||||||+|+|..-.        
T Consensus        82 ----e~~ynvlVMdLLGPsLEdLfnfC-~R~ftmkTvLMLaDQml~RiEyvH~r-~fiHRDIKPdNFLMGlg--------  147 (341)
T KOG1163|consen   82 ----EKDYNVLVMDLLGPSLEDLFNFC-SRRFTMKTVLMLADQMLSRIEYVHLR-NFIHRDIKPDNFLMGLG--------  147 (341)
T ss_pred             ----ccccceeeeeccCccHHHHHHHH-hhhhhHHhHHHHHHHHHHHHHHHHhh-ccccccCCccceeeccc--------
Confidence                56889999999999999999864 45599999999999999999999998 99999999999998331        


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (341)
T KOG1163|consen  148 --------------------------------------------------------------------------------  147 (341)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc----------cccCCCCCCCCccCChhhcCCCCCCcc
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY----------KQFTNDIQTRQYRCPEVLLGSKYSTPA  344 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~----------~~~~~~~gt~~y~aPE~l~~~~~~~~~  344 (530)
                                               .....+.|+|||+|+...          .......||..|.+--...+...+...
T Consensus       148 -------------------------rh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRD  202 (341)
T KOG1163|consen  148 -------------------------RHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRD  202 (341)
T ss_pred             -------------------------cccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhh
Confidence                                     013468999999996532          223455799999998888888888999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCC
Q 045988          345 DLWSFACICFELATGDVLFDPHS  367 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~  367 (530)
                      |+=|+|.+|..+.-|..||.+..
T Consensus       203 DmeSvgYvLmYfnrG~LPWQglk  225 (341)
T KOG1163|consen  203 DMESVGYVLMYFNRGSLPWQGLK  225 (341)
T ss_pred             hhhhhcceeeeeecCCCcccccc
Confidence            99999999999999999998765

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.94  E-value=1.3e-25  Score=226.78  Aligned_cols=208  Identities=27%  Similarity=0.305  Sum_probs=169.9

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCC-eEEEEEEecccccc-hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTS-HYVALKVQKSAQHY-TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~-~~vAiK~~~~~~~~-~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      +|.+.++||+|+||.||+|.+..++ ..+|+|+....... ...+..|+.++..+...+  ...++..+++...   ...
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~--~~~~~~~~~~~G~---~~~   93 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKN--GPSHFPKLLDHGR---STE   93 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhc--CCCCCCEEEEecc---CCC
Confidence            8999999999999999999988875 78999987765322 227888999999997511  2346888888774   145


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      .+.||||+.+|.+|.++......+.++..++..++.|++.||.+||+. |+|||||||+|+++.....            
T Consensus        94 ~~~~iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~-G~iHRDiKp~N~~~g~~~~------------  160 (322)
T KOG1164|consen   94 DFNFIVMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSK-GFIHRDIKPENFVVGQSSR------------  160 (322)
T ss_pred             ceeEEEEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhc-CcccCCcCHHHeeecCCCC------------
Confidence            789999999999999998766666799999999999999999999996 9999999999999954100            


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (322)
T KOG1164|consen  161 --------------------------------------------------------------------------------  160 (322)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccc--ccc--------c--c-cCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNAC--WTY--------K--Q-FTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~--~~~--------~--~-~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                         .....+.|.|||+|+  ...        .  . ...+.||..|+++.+..+...+.+.|+|
T Consensus       161 -------------------~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDle  221 (322)
T KOG1164|consen  161 -------------------SEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLE  221 (322)
T ss_pred             -------------------cccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhh
Confidence                               002468999999997  310        0  1 1235599999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCC
Q 045988          348 SFACICFELATGDVLFDPHS  367 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~  367 (530)
                      |++.++.+|+.|..||....
T Consensus       222 s~~Y~l~el~~g~LPW~~~~  241 (322)
T KOG1164|consen  222 SLFYMLLELLKGSLPWEALE  241 (322)
T ss_pred             hHHHHHHHHhcCCCCCcccc
Confidence            99999999999999996543

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.94  E-value=1.2e-26  Score=213.40  Aligned_cols=168  Identities=22%  Similarity=0.321  Sum_probs=123.4

Q ss_pred             cCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccC
Q 045988          132 ENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVL  211 (530)
Q Consensus       132 ~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (530)
                      |+|.+++... ...+++..++.|+.||+.||+|||++ +      ||+|||++.                          
T Consensus         1 GsL~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~lH~~-~------kp~Nil~~~--------------------------   46 (176)
T smart00750        1 VSLADILEVR-GRPLNEEEIWAVCLQCLRALRELHRQ-A------KSGNILLTW--------------------------   46 (176)
T ss_pred             CcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhc-C------CcccEeEcC--------------------------
Confidence            5788888643 34599999999999999999999997 7      999999954                          


Q ss_pred             CCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCc
Q 045988          212 DPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSR  291 (530)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (530)
                                                                                                      
T Consensus        47 --------------------------------------------------------------------------------   46 (176)
T smart00750       47 --------------------------------------------------------------------------------   46 (176)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCC
Q 045988          292 SRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNY  371 (530)
Q Consensus       292 ~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~  371 (530)
                                ++.+++  ||++......  ...||+.|+|||++.+..|+.++|||||||++|+|++|.+||.....   
T Consensus        47 ----------~~~~~~--fG~~~~~~~~--~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~---  109 (176)
T smart00750       47 ----------DGLLKL--DGSVAFKTPE--QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERE---  109 (176)
T ss_pred             ----------ccceee--ccceEeeccc--cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccch---
Confidence                      345777  9988764332  23689999999999999999999999999999999999999953221   


Q ss_pred             CCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH--HHHHHHhhccCcC
Q 045988          372 DRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN--DMADFLVPILDFV  449 (530)
Q Consensus       372 ~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dLl~~mL~~d  449 (530)
                        ....+..+...   .+....                          .      ........+.  .+.+||.+||..|
T Consensus       110 --~~~~~~~~~~~---~~~~~~--------------------------~------~~~~~~~~~~~~~~~~~i~~cl~~~  152 (176)
T smart00750      110 --LSAILEILLNG---MPADDP--------------------------R------DRSNLESVSAARSFADFMRVCASRL  152 (176)
T ss_pred             --hcHHHHHHHHH---hccCCc--------------------------c------ccccHHHHHhhhhHHHHHHHHHhcc
Confidence              11111111111   000000                          0      0000112222  6899999999999


Q ss_pred             CCCCcCHHHHhcCCCCCC
Q 045988          450 PEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       450 P~~Rpta~elL~hp~f~~  467 (530)
                      |.+||++.|++.|+|+..
T Consensus       153 p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      153 PQRREAANHYLAHCRALF  170 (176)
T ss_pred             cccccCHHHHHHHHHHHH
Confidence            999999999999999863

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.4e-27  Score=251.79  Aligned_cols=265  Identities=21%  Similarity=0.290  Sum_probs=190.8

Q ss_pred             CCE-EEEEEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRY-VVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y-~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ..| .....+|.|+||.|+.+......+.++.|.+...  ....+.. ....+...+.......|+|++..+..+...  
T Consensus       317 ~~y~~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~-~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~--  393 (601)
T KOG0590|consen  317 EKYGKPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERK-YNYNITSEFCIGSSLSHPNIIETLDIVQEI--  393 (601)
T ss_pred             cccCCccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHH-HhhhhhhheeecccccCCchhhhHHHHhhc--
Confidence            345 4678899999999999988777777777755421  1111111 111144444444444888898888887743  


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                        ....-+||||..+|+.++...  ..+...++..++.||+.||+|||.. ||.|||+||+|+++..             
T Consensus       394 --~~~~~~mE~~~~Dlf~~~~~~--~~~~~~e~~c~fKqL~~Gv~y~h~~-GiahrdlK~enll~~~-------------  455 (601)
T KOG0590|consen  394 --DGILQSMEYCPYDLFSLVMSN--GKLTPLEADCFFKQLLRGVKYLHSM-GLAHRDLKLENLLVTE-------------  455 (601)
T ss_pred             --ccchhhhhcccHHHHHHHhcc--cccchhhhhHHHHHHHHHHHHHHhc-CceeccCccccEEEec-------------
Confidence              334444999955999998744  2488899999999999999999995 9999999999999965             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       456 --------------------------------------------------------------------------------  455 (601)
T KOG0590|consen  456 --------------------------------------------------------------------------------  455 (601)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-------cccCCCCCCCCccCChhhcCCCCCC-cchhHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-------KQFTNDIQTRQYRCPEVLLGSKYST-PADLWSFA  350 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-------~~~~~~~gt~~y~aPE~l~~~~~~~-~~DiWSlG  350 (530)
                                             .+.+|++|||.+....       ......+|+..|+|||++.+..|.+ .+||||.|
T Consensus       456 -----------------------~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~  512 (601)
T KOG0590|consen  456 -----------------------NGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCG  512 (601)
T ss_pred             -----------------------CCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhcc
Confidence                                   4579999999985432       1245668999999999999999975 57999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      +++..|++|+.||.........     ...               ..+.                   ...++..+...+
T Consensus       513 ii~~~m~~~~~~Wk~a~~~~~~-----~~~---------------~~~~-------------------~~~~~~~~~~~~  553 (601)
T KOG0590|consen  513 IIYICMILGRFPWKVAKKSDNS-----FKT---------------NNYS-------------------DQRNIFEGPNRL  553 (601)
T ss_pred             ceEEEEecCCCccccccccccc-----hhh---------------hccc-------------------cccccccChHHH
Confidence            9999999999999644322110     000               0000                   011111122223


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ....+...+.+|.+||++||.+|+|+++||+.+||+.-.
T Consensus       554 ~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i~  592 (601)
T KOG0590|consen  554 LSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSIE  592 (601)
T ss_pred             HHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhcc
Confidence            345567788999999999999999999999999998654

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.93  E-value=2.1e-25  Score=211.69  Aligned_cols=210  Identities=20%  Similarity=0.285  Sum_probs=175.5

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      |..+-+-.|+|.++||+|+||.+++|.+..+++.||||+...... .-.+..|.+..+.|.     ..++|..+|.+-. 
T Consensus        22 ~~~~VG~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~-APQLrdEYr~YKlL~-----g~~GIP~vYYFGq-   94 (449)
T KOG1165|consen   22 GVLMVGPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSE-APQLRDEYRTYKLLG-----GTEGIPQVYYFGQ-   94 (449)
T ss_pred             CceEecccceeccccccCcceeeecccccccCceEEEEeccccCC-cchHHHHHHHHHHHc-----CCCCCCceeeecc-
Confidence            333446689999999999999999999999999999998765443 456778999999986     4566777776644 


Q ss_pred             cCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                         .+.+-.||||++|.+|.+++..+. +.|+..++.-++.||+.-++|+|++ .+|.|||||+|+||.....+      
T Consensus        95 ---eG~~NiLVidLLGPSLEDLFD~Cg-R~FSvKTV~miA~Qmi~rie~vH~k-~LIYRDIKPdNFLIGrp~~k------  163 (449)
T KOG1165|consen   95 ---EGKYNILVIDLLGPSLEDLFDLCG-RRFSVKTVAMIAKQMITRIEYVHEK-DLIYRDIKPDNFLIGRPGTK------  163 (449)
T ss_pred             ---ccchhhhhhhhhCcCHHHHHHHhc-CcccHHhHHHHHHHHHHHHHHHHhc-ceeecccCccceeecCCCCC------
Confidence               678999999999999999998654 5699999999999999999999998 99999999999999552110      


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (449)
T KOG1165|consen  164 --------------------------------------------------------------------------------  163 (449)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc----------cccCCCCCCCCccCChhhcCCCCCCcch
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY----------KQFTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~----------~~~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                               ....+.++|||+|+...          .+..+..||..||+-...+|...+.+.|
T Consensus       164 -------------------------~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDD  218 (449)
T KOG1165|consen  164 -------------------------DANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDD  218 (449)
T ss_pred             -------------------------CCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhh
Confidence                                     03468999999996422          2345567999999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCC
Q 045988          346 LWSFACICFELATGDVLFDPHSG  368 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~  368 (530)
                      +=|||-|+++.|-|.+||.+...
T Consensus       219 LEaLGHvFmYFLRGsLPWQGLKA  241 (449)
T KOG1165|consen  219 LEALGHVFMYFLRGSLPWQGLKA  241 (449)
T ss_pred             HHHhhhhhhhhccCCCccccccC
Confidence            99999999999999999987654

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.93  E-value=5e-26  Score=219.77  Aligned_cols=248  Identities=18%  Similarity=0.256  Sum_probs=187.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCC-----eEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTS-----HYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~-----~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ..|+++...+-+|.||.||.|..+...     +.|-+|.++....  ....++.|--.|..+      .|||+..+.++.
T Consensus       283 r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~------sH~nll~V~~V~  356 (563)
T KOG1024|consen  283 RCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGA------SHPNLLSVLGVS  356 (563)
T ss_pred             hhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC------cCCCccceeEEE
Confidence            567889999999999999999766432     3444555444321  223344454444444      689999999887


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhc------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYAD------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      ..   +....++++.++ -++|..++...+      .+.++..+...++.||..|++|||++ ||||.||-..|++|++ 
T Consensus       357 ie---~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~-~ViHkDiAaRNCvIdd-  431 (563)
T KOG1024|consen  357 IE---DYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH-GVIHKDIAARNCVIDD-  431 (563)
T ss_pred             ee---ccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc-Ccccchhhhhcceehh-
Confidence            75   346788889999 789999987433      12367778889999999999999997 9999999999999966 


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       432 --------------------------------------------------------------------------------  431 (563)
T KOG1024|consen  432 --------------------------------------------------------------------------------  431 (563)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCC-----CCCccCChhhcCCCCC
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQ-----TRQYRCPEVLLGSKYS  341 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~g-----t~~y~aPE~l~~~~~~  341 (530)
                                                         ..+|||+|=.+++........+.|     ...||+||.+....|+
T Consensus       432 -----------------------------------~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~ys  476 (563)
T KOG1024|consen  432 -----------------------------------QLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYS  476 (563)
T ss_pred             -----------------------------------heeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhc
Confidence                                               467999999999877666666665     4579999999999999


Q ss_pred             CcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 TPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 ~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      .++|+|||||+||||+| |+.|+....       ...++.+..          .+                         
T Consensus       477 sasDvWsfGVllWELmtlg~~PyaeID-------PfEm~~ylk----------dG-------------------------  514 (563)
T KOG1024|consen  477 SASDVWSFGVLLWELMTLGKLPYAEID-------PFEMEHYLK----------DG-------------------------  514 (563)
T ss_pred             chhhhHHHHHHHHHHHhcCCCCccccC-------HHHHHHHHh----------cc-------------------------
Confidence            99999999999999998 788884322       111111110          00                         


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                           .++..|-++++++..++..||..+|++||+.+|+..
T Consensus       515 -----yRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~  550 (563)
T KOG1024|consen  515 -----YRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVI  550 (563)
T ss_pred             -----ceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHH
Confidence                 012234567899999999999999999999999864

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.92  E-value=3.9e-23  Score=206.50  Aligned_cols=259  Identities=32%  Similarity=0.423  Sum_probs=195.2

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCc-ceeEecceeeecCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKK-CVVKLLDHFKHSGP  118 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~-~Iv~~~~~~~~~~~  118 (530)
                      |.+.+.||.|+||.||++.+.   ..+|+|.+.....    ....+.+|+.++..+.      |+ +|+++++.+.    
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~------~~~~i~~~~~~~~----   68 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLN------HPPNIVKLYDFFQ----   68 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHcc------CCcceeeEEEEEe----
Confidence            789999999999999999887   7899998776543    3567888999999984      44 6999999996    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADY-RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~-~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      .....+++++++ ++++..++..... ..+....+..++.|++.+|.|+|+. +++||||||+||++..           
T Consensus        69 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~-~~~hrd~kp~nil~~~-----------  136 (384)
T COG0515          69 DEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK-GIIHRDIKPENILLDR-----------  136 (384)
T ss_pred             cCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeeecC-----------
Confidence            335589999999 7888866654322 2589999999999999999999997 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (384)
T COG0515         137 --------------------------------------------------------------------------------  136 (384)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhccc-ceEEecCCccccccc---------ccCCCCCCCCccCChhhcC---CCCCCc
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDL-KCKLVDFGNACWTYK---------QFTNDIQTRQYRCPEVLLG---SKYSTP  343 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vkL~DfG~a~~~~~---------~~~~~~gt~~y~aPE~l~~---~~~~~~  343 (530)
                                               .. .++++|||.+.....         ......||..|+|||.+.+   ..++..
T Consensus       137 -------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~  191 (384)
T COG0515         137 -------------------------DGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSS  191 (384)
T ss_pred             -------------------------CCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCch
Confidence                                     22 589999999864332         2356789999999999988   578899


Q ss_pred             chhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCC--chhhhcCCCcccccccccCccccchhcccCCch
Q 045988          344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMM--PRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       344 ~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      .|+||+|++++++++|..||......   ................  ...                            ..
T Consensus       192 ~D~~s~g~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------------------------~~  240 (384)
T COG0515         192 SDIWSLGITLYELLTGLPPFEGEKNS---SATSQTLKIILELPTPSLASP----------------------------LS  240 (384)
T ss_pred             HhHHHHHHHHHHHHhCCCCCCCCCcc---ccHHHHHHHHHhcCCcccccc----------------------------cC
Confidence            99999999999999999998544311   0112222222211111  000                            00


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ..      ........+.+++.+++..+|..|.++.+...++|+....
T Consensus       241 ~~------~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  282 (384)
T COG0515         241 PS------NPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLK  282 (384)
T ss_pred             cc------ccchhhHHHHHHHHHHHhcCchhcCCHHHHhhchHhhCcc
Confidence            00      0012235788999999999999999999999997776543

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.91  E-value=4.1e-24  Score=215.91  Aligned_cols=121  Identities=28%  Similarity=0.263  Sum_probs=94.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCC-CCeEEEEEEeccc------ccchHHHHHHHHHHHHhhcCCCCCCcceeE-ecce
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQ-TSHYVALKVQKSA------QHYTEAALDEIKILKQIAEGDPDDKKCVVK-LLDH  112 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~-~~~~vAiK~~~~~------~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~-~~~~  112 (530)
                      .++|.+.++||+|+||+||+|++.. +++.||||++...      ......+.+|+++|++|      .|+||+. +++.
T Consensus        17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L------~h~~iv~~l~~~   90 (365)
T PRK09188         17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTV------RGIGVVPQLLAT   90 (365)
T ss_pred             cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhc------cCCCCCcEEEEc
Confidence            6789999999999999999998876 6888999976532      12245688999999999      5666774 4432


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccC-CCCcEEEee
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDL-KPENVLLMS  185 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDI-Kp~NILl~~  185 (530)
                              ...||||||| +++|. .+.  .   ..   ...++.|++.||.|||++ ||+|||| ||+|||++.
T Consensus        91 --------~~~~LVmE~~~G~~L~-~~~--~---~~---~~~~~~~i~~aL~~lH~~-gIiHrDL~KP~NILv~~  147 (365)
T PRK09188         91 --------GKDGLVRGWTEGVPLH-LAR--P---HG---DPAWFRSAHRALRDLHRA-GITHNDLAKPQNWLMGP  147 (365)
T ss_pred             --------CCcEEEEEccCCCCHH-HhC--c---cc---hHHHHHHHHHHHHHHHHC-CCeeCCCCCcceEEEcC
Confidence                    2479999999 77775 221  1   11   256889999999999997 9999999 999999954

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-25  Score=231.01  Aligned_cols=236  Identities=27%  Similarity=0.398  Sum_probs=190.9

Q ss_pred             EeccccceEEEEEEeC---CCCeEEEEEEecccccc---hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcE
Q 045988           49 KLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQHY---TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQH  122 (530)
Q Consensus        49 ~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~~~---~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~  122 (530)
                      .+|+|+||.|++++..   ..|..||+|+.++....   ......|..++..+.     .||.+|++...|+    ....
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~-----~~~f~v~lhyafq----t~~k   71 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVH-----NTPFLVKLHYAFQ----TDGK   71 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhcc-----CCCceeeeeeeec----cccc
Confidence            3799999999998643   35789999988765321   113445777776663     6899999999999    4578


Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      .++++++. +++|...+..  ...+.+...+.+...++.|++++|.. +|+|||+|++||+++.                
T Consensus        72 l~l~ld~~rgg~lft~l~~--~~~f~~~~~~~~~aelaLald~lh~l-~iiyrd~k~enilld~----------------  132 (612)
T KOG0603|consen   72 LYLILDFLRGGDLFTRLSK--EVMFDELDVAFYLAELALALDHLHKL-GIAYRDYKLENVLLLL----------------  132 (612)
T ss_pred             hhHhhhhcccchhhhcccc--CCchHHHHHHHHHHHHHHHHhhcchh-HHHHhcccccceeecc----------------
Confidence            99999999 8888877653  33488889999999999999999995 9999999999999965                


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (612)
T KOG0603|consen  133 --------------------------------------------------------------------------------  132 (612)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCC
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDV  361 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~  361 (530)
                                          ++.+++.|||.++..-..... +||..|||||++.  .+..++|+||+|+++|+|++|..
T Consensus       133 --------------------~Ghi~~tdfglske~v~~~~~-cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~  189 (612)
T KOG0603|consen  133 --------------------EGHIKLTDFGLSKEAVKEKIA-CGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTL  189 (612)
T ss_pred             --------------------cCccccCCchhhhHhHhhhhc-ccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCC
Confidence                                678999999999764433222 8999999999998  67889999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHH
Q 045988          362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADF  441 (530)
Q Consensus       362 PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL  441 (530)
                      ||.+          +.+.                                          .|+...+.++...+..+.++
T Consensus       190 pf~~----------~~~~------------------------------------------~Il~~~~~~p~~l~~~a~~~  217 (612)
T KOG0603|consen  190 PFGG----------DTMK------------------------------------------RILKAELEMPRELSAEARSL  217 (612)
T ss_pred             CCch----------HHHH------------------------------------------HHhhhccCCchhhhHHHHHH
Confidence            9953          2222                                          23334456677788999999


Q ss_pred             HhhccCcCCCCCcC-----HHHHhcCCCCCC
Q 045988          442 LVPILDFVPEKRPT-----AAQCLTHPWINV  467 (530)
Q Consensus       442 l~~mL~~dP~~Rpt-----a~elL~hp~f~~  467 (530)
                      +..|+..+|.+|.-     +.|+++|+||..
T Consensus       218 ~~~l~~r~p~nrLg~~~~~~~eik~h~f~~~  248 (612)
T KOG0603|consen  218 FRQLFKRNPENRLGAGPDGVDEIKQHEFFQS  248 (612)
T ss_pred             HHHHHhhCHHHHhccCcchhHHHhccchhee
Confidence            99999999999986     479999999975

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=2e-23  Score=202.39  Aligned_cols=283  Identities=18%  Similarity=0.194  Sum_probs=192.2

Q ss_pred             cccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCe-----------------------------------EEEEEEe
Q 045988           31 HAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSH-----------------------------------YVALKVQ   75 (530)
Q Consensus        31 ~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~-----------------------------------~vAiK~~   75 (530)
                      -|-++-..|..++|.|.+.||+|..+.||.|+...+|.                                   +.|||++
T Consensus       146 i~~r~dskFtiddyeiG~~igkGC~AaVY~A~~~~dg~~le~~~~t~~~pgf~p~ts~p~e~~q~~~p~~~aFPLAiKmM  225 (598)
T KOG4158|consen  146 IPNRIDSKFTIDDYEIGEFIGKGCNAAVYSARLANDGSDLESSGNTHYGPGFNPVTSIPAEIPQVSKPAQKAFPLAIKMM  225 (598)
T ss_pred             CcchhhcccchhhhcccchhhccchhhhhhhhcCCCcccccccCCCCcCCCcCCCcCCcccCCcccCccccccchHHHHh
Confidence            34566667777899999999999999999987543211                                   3567754


Q ss_pred             cccccc--hHHHH----HHHHH--------------HHHhh--cCCCCCCcceeEecceeeecC----------------
Q 045988           76 KSAQHY--TEAAL----DEIKI--------------LKQIA--EGDPDDKKCVVKLLDHFKHSG----------------  117 (530)
Q Consensus        76 ~~~~~~--~~~~~----~Ei~i--------------l~~l~--~~~~~~h~~Iv~~~~~~~~~~----------------  117 (530)
                      -.....  ...++    +|+--              .+.+.  .-....|||||+++.+|.++-                
T Consensus       226 fN~~~~s~~~~iL~sM~~ElvPa~~~a~~~e~~~~t~R~l~nqtvhLa~HPNIvri~~aF~dsv~~lPda~~~YPdalp~  305 (598)
T KOG4158|consen  226 FNFEHDSGDAHILKSMGNELVPAPNAAKLLEGQMGTFRPLPNQTVHLAKHPNIVRIQTAFIDSVKVLPDAIERYPDALPA  305 (598)
T ss_pred             cccccCCchHHHHHHhhhhccCcchhhhhcccccceeeeCCCCCcccCCCCCEEeehhhhhhhhccCCchhhhCcccccc
Confidence            332211  11111    11100              00110  001248999999999987632                


Q ss_pred             -------CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          118 -------PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       118 -------~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                             ..+..+|+||..+..+|..++-.   +..+....+-++.||++|+.|||.+ ||.|||+|.+||||.-+.|. 
T Consensus       306 R~~p~g~g~~~tlylvMkrY~~tLr~yl~~---~~~s~r~~~~~laQlLEav~hL~~h-gvAhRDlKSDNiL~ElddD~-  380 (598)
T KOG4158|consen  306 RWYPSGAGEPKTLYLVMKRYRQTLREYLWT---RHRSYRTGRVILAQLLEAVTHLHKH-GVAHRDLKSDNILLELDDDE-  380 (598)
T ss_pred             eecccccCCCceEEEehhcchhhHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHc-cchhhcccccceEEEecCCC-
Confidence                   23467999999999999999853   3477888999999999999999998 99999999999999442111 


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       381 --------------------------------------------------------------------------------  380 (598)
T KOG4158|consen  381 --------------------------------------------------------------------------------  380 (598)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---------ccCCCCCCCCccCChhhcCCC--
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---------QFTNDIQTRQYRCPEVLLGSK--  339 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---------~~~~~~gt~~y~aPE~l~~~~--  339 (530)
                                                     -..++|+|||++-....         ......|.-.-||||+....+  
T Consensus       381 -------------------------------~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp  429 (598)
T KOG4158|consen  381 -------------------------------IPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGP  429 (598)
T ss_pred             -------------------------------CcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCC
Confidence                                           24689999998743221         123345788899999986432  


Q ss_pred             ----CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhc
Q 045988          340 ----YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL  415 (530)
Q Consensus       340 ----~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (530)
                          --.++|.|+.|.+.||++....||.+....-       +                             +.+.++  
T Consensus       430 ~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~-------L-----------------------------~~r~Yq--  471 (598)
T KOG4158|consen  430 NAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEML-------L-----------------------------DTRTYQ--  471 (598)
T ss_pred             ceeeccchhhhhhhhhhHHHHhccCCcccccchhe-------e-----------------------------chhhhh--
Confidence                1247899999999999999999996422100       0                             000000  


Q ss_pred             ccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCH---HHHhc------CCCCCCCCCCCCCC
Q 045988          416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTA---AQCLT------HPWINVGPRLLEPS  475 (530)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta---~elL~------hp~f~~~~~~~~~~  475 (530)
                              -.+...++..+++.+++|+..+|+.||.+|+++   +.+|+      |.|++.......++
T Consensus       472 --------e~qLPalp~~vpp~~rqlV~~lL~r~pskRvsp~iAANvl~LsLw~~~~~vka~~~~~~~~  532 (598)
T KOG4158|consen  472 --------ESQLPALPSRVPPVARQLVFDLLKRDPSKRVSPNIAANVLNLSLWRMGEDVKAMMEKCGIS  532 (598)
T ss_pred             --------hhhCCCCcccCChHHHHHHHHHhcCCccccCCccHHHhHHHHHHhcCchHHHHhcccccHH
Confidence                    012235667788999999999999999999995   45554      56666655444333

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.89  E-value=6.9e-24  Score=227.59  Aligned_cols=220  Identities=25%  Similarity=0.383  Sum_probs=160.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ..+|..++.|..|+||.||+++|+.+.+.+|+|+-+.+-.           |+.           |.    .|.      
T Consensus        82 e~df~~IklisngAygavylvrh~~trqrfa~kiNkq~li-----------lRn-----------il----t~a------  129 (1205)
T KOG0606|consen   82 ESDFNTIKLISNGAYGAVYLVRHKETRQRFAMKINKQNLI-----------LRN-----------IL----TFA------  129 (1205)
T ss_pred             ccccceeEeeccCCCCceeeeeccccccchhhcccccchh-----------hhc-----------cc----ccc------
Confidence            4689999999999999999999999999999976444321           110           11    111      


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ...+.|     |+=..+++...  .++...        +.|++|||+. ||+|||+||+|.+|+.               
T Consensus       130 ~npfvv-----gDc~tllk~~g--~lPvdm--------vla~Eylh~y-givhrdlkpdnllIT~---------------  178 (1205)
T KOG0606|consen  130 GNPFVV-----GDCATLLKNIG--PLPVDM--------VLAVEYLHSY-GIVHRDLKPDNLLITS---------------  178 (1205)
T ss_pred             CCccee-----chhhhhcccCC--CCcchh--------hHHhHhhccC-CeecCCCCCCcceeee---------------
Confidence            112222     33334443222  233322        7899999995 9999999999999976               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (1205)
T KOG0606|consen  179 --------------------------------------------------------------------------------  178 (1205)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc----------------c--cCCCCCCCCccCChhhcCCCCCC
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----------------Q--FTNDIQTRQYRCPEVLLGSKYST  342 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----------------~--~~~~~gt~~y~aPE~l~~~~~~~  342 (530)
                                           -+.+|+.|||++...-.                +  ....+|||.|+|||+++...|+.
T Consensus       179 ---------------------mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygk  237 (1205)
T KOG0606|consen  179 ---------------------MGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGK  237 (1205)
T ss_pred             ---------------------cccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCC
Confidence                                 35789999998853110                0  12348999999999999999999


Q ss_pred             cchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchh
Q 045988          343 PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       343 ~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      .+|+|++|+|+|+.+.|+.||.+.+      .++.+..++......|+.                               
T Consensus       238 pvdwwamGiIlyeFLVgcvpffGdt------peelfg~visd~i~wpE~-------------------------------  280 (1205)
T KOG0606|consen  238 PVDWWAMGIILYEFLVGCVPFFGDT------PEELFGQVISDDIEWPEE-------------------------------  280 (1205)
T ss_pred             CccHHHHHHHHHHHheeeeeccCCC------HHHHHhhhhhhhcccccc-------------------------------
Confidence            9999999999999999999998765      333444444443333332                               


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCc---CHHHHhcCCCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRP---TAAQCLTHPWINVGP  469 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rp---ta~elL~hp~f~~~~  469 (530)
                              .....++++++|.++|+.+|..|.   .+-++.+|+||+...
T Consensus       281 --------dea~p~Ea~dli~~LL~qnp~~Rlgt~ga~evk~h~ff~~LD  322 (1205)
T KOG0606|consen  281 --------DEALPPEAQDLIEQLLRQNPLCRLGTGGALEVKQHGFFQLLD  322 (1205)
T ss_pred             --------CcCCCHHHHHHHHHHHHhChHhhcccchhhhhhhccceeecc
Confidence                    223468899999999999999996   478899999997643

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.89  E-value=1.2e-22  Score=196.88  Aligned_cols=207  Identities=21%  Similarity=0.268  Sum_probs=129.9

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcC-CCC---CCcceeEecceee
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEG-DPD---DKKCVVKLLDHFK  114 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~-~~~---~h~~Iv~~~~~~~  114 (530)
                      .+...+.||.|+|+.||.+++..||+.+|+|++....    ...+.+.+|.-....+.+. ++.   .|-.++..++...
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            4667899999999999999999999999999865432    2233444444322221110 000   0112333333322


Q ss_pred             ec--------CCCCc-----EEEEEEeccCcCHHHHHHhhccCC-----CCHHHHHHHHHHHHHHHHHHHhhCCceeccC
Q 045988          115 HS--------GPNGQ-----HVCMVFEYLGENLLTLIKYADYRG-----VPLHMVKEICFHILVGLDHLHRELSIIHTDL  176 (530)
Q Consensus       115 ~~--------~~~~~-----~~~lVmE~~~~~L~~~i~~~~~~~-----l~~~~~~~i~~qll~aL~~LH~~~gIvHrDI  176 (530)
                      ..        .+...     ..+++|+.+.++|..++.......     +.......+..|++..+++||+. ||||+||
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~-GlVHgdi  171 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY-GLVHGDI  171 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT-TEEEST-
T ss_pred             EcCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc-ceEeccc
Confidence            21        11111     347899999999988865322111     22223345568999999999997 9999999


Q ss_pred             CCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCC
Q 045988          177 KPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDA  256 (530)
Q Consensus       177 Kp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (530)
                      ||+|+|++.                                                                       
T Consensus       172 ~~~nfll~~-----------------------------------------------------------------------  180 (288)
T PF14531_consen  172 KPENFLLDQ-----------------------------------------------------------------------  180 (288)
T ss_dssp             SGGGEEE-T-----------------------------------------------------------------------
T ss_pred             ceeeEEEcC-----------------------------------------------------------------------
Confidence            999999966                                                                       


Q ss_pred             CCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhc
Q 045988          257 EPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLL  336 (530)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~  336 (530)
                                                                   ++.+.|+||+..............+..|.+||...
T Consensus       181 ---------------------------------------------~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~  215 (288)
T PF14531_consen  181 ---------------------------------------------DGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELES  215 (288)
T ss_dssp             ---------------------------------------------TS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHH
T ss_pred             ---------------------------------------------CCCEEEcChHHHeecCceeeccCCCcccCChhhhh
Confidence                                                         67899999998865544333234467899999874


Q ss_pred             CC--------CCCCcchhHHHHHHHHHHHhCCCCCCCC
Q 045988          337 GS--------KYSTPADLWSFACICFELATGDVLFDPH  366 (530)
Q Consensus       337 ~~--------~~~~~~DiWSlG~il~elltG~~PF~~~  366 (530)
                      ..        .++.+.|.|+||+++|.|++|..||...
T Consensus       216 ~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~  253 (288)
T PF14531_consen  216 CAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLS  253 (288)
T ss_dssp             HHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCC
T ss_pred             hhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCC
Confidence            32        3788899999999999999999999644

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.88  E-value=8e-23  Score=192.46  Aligned_cols=133  Identities=17%  Similarity=0.153  Sum_probs=101.0

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHH----------HHHHHHHHHHhhcCCCCCC
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA----------ALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~----------~~~Ei~il~~l~~~~~~~h  103 (530)
                      .+++.+-.++|++.++||.|+||.||++.+  ++..||||++.......+.          +.+|++.+.+|      .|
T Consensus        23 ~~~~~~l~~~y~~~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL------~~   94 (232)
T PRK10359         23 EIFDDFLSYNIKTIKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRV------RS   94 (232)
T ss_pred             HHHHHHhhCceEEEEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHH------HH
Confidence            455555689999999999999999999754  4668999998754322222          47899999999      56


Q ss_pred             cceeEecceeeecCCC----CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          104 KCVVKLLDHFKHSGPN----GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~~----~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                      ++|..+.+++......    ....+|||||+ |.+|.++..      +++    ..+.+|+.+|..||++ ||+||||||
T Consensus        95 ~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH~~-gi~H~Dikp  163 (232)
T PRK10359         95 EGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLHQH-GMVSGDPHK  163 (232)
T ss_pred             CCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHHHc-CCccCCCCh
Confidence            6688888776643211    24589999999 678876632      333    3466999999999997 999999999


Q ss_pred             CcEEEee
Q 045988          179 ENVLLMS  185 (530)
Q Consensus       179 ~NILl~~  185 (530)
                      +||+++.
T Consensus       164 ~Nili~~  170 (232)
T PRK10359        164 GNFIVSK  170 (232)
T ss_pred             HHEEEeC
Confidence            9999954

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.88  E-value=3.4e-23  Score=222.41  Aligned_cols=130  Identities=22%  Similarity=0.246  Sum_probs=101.8

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .|...+.||++.|=+|.+|.+.. |. |+||++-+..  ...+.+.++++-.+...    ..+||++.+.-+..    ..
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~e-G~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l----~~~pn~lPfqk~~~----t~   93 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDRE-GL-VVVKVFVKQDPTISLRPFKQRLEEIKFAL----MKAPNCLPFQKVLV----TD   93 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCC-ce-EEEEEEeccCCCCCchHHHHHHHHHHHHh----hcCCcccchHHHHH----hh
Confidence            68889999999999999997543 44 8999866543  22333333333333211    17889999888866    55


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      ...|||=+|...+|++.+..++.  +..-+.++|+.||+.||.-+|.. ||+|+|||.|||||+.
T Consensus        94 kAAylvRqyvkhnLyDRlSTRPF--L~~iEKkWiaFQLL~al~qcH~~-gVcHGDIKsENILiTS  155 (1431)
T KOG1240|consen   94 KAAYLVRQYVKHNLYDRLSTRPF--LVLIEKKWIAFQLLKALSQCHKL-GVCHGDIKSENILITS  155 (1431)
T ss_pred             HHHHHHHHHHhhhhhhhhccchH--HHHHHHHHHHHHHHHHHHHHHHc-CccccccccceEEEee
Confidence            78899999999999999975554  78889999999999999999996 9999999999999976

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.85  E-value=1.8e-21  Score=180.83  Aligned_cols=122  Identities=16%  Similarity=0.177  Sum_probs=90.6

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccc---------------------------hHHHHHHHHHHHHhhcCC
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY---------------------------TEAALDEIKILKQIAEGD   99 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~---------------------------~~~~~~Ei~il~~l~~~~   99 (530)
                      .+.||+|+||.||+|.+. +|+.||||+++.....                           .....+|++++.++.+..
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAG   80 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            468999999999999986 8999999998754210                           012235999999997644


Q ss_pred             CCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH-HhhCCceeccCC
Q 045988          100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL-HRELSIIHTDLK  177 (530)
Q Consensus       100 ~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~L-H~~~gIvHrDIK  177 (530)
                      . .+|+++.     .      ...+|||||+ ++++...+.  ....++...+..++.||+.||.+| |+. ||+|||||
T Consensus        81 v-~~p~~~~-----~------~~~~iVmE~i~g~~l~~~~~--~~~~~~~~~~~~i~~qi~~~L~~l~H~~-giiHrDlk  145 (190)
T cd05147          81 I-PCPEPIL-----L------KSHVLVMEFIGDDGWAAPRL--KDAPLSESKARELYLQVIQIMRILYQDC-RLVHADLS  145 (190)
T ss_pred             C-CCCcEEE-----e------cCCEEEEEEeCCCCCcchhh--hcCCCCHHHHHHHHHHHHHHHHHHHHhC-CcccCCCC
Confidence            2 2333321     1      1238999999 445443322  234589999999999999999999 686 99999999


Q ss_pred             CCcEEEe
Q 045988          178 PENVLLM  184 (530)
Q Consensus       178 p~NILl~  184 (530)
                      |+|||++
T Consensus       146 P~NIli~  152 (190)
T cd05147         146 EYNLLYH  152 (190)
T ss_pred             HHHEEEE
Confidence            9999994

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.2e-21  Score=212.52  Aligned_cols=199  Identities=22%  Similarity=0.332  Sum_probs=156.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      +..|.|.+.||+|+||+||+|.+.. |+.||||+.+....  -.+.--.+++.+|. ..  --+.|..+...+...    
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~-~~~~alK~e~P~~~--WEfYI~~q~~~RLk-~~--~~~~~~~~~~a~~~~----  766 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSN-GKLVALKVEKPPNP--WEFYICLQVMERLK-PQ--MLPSIMHISSAHVFQ----  766 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCC-CcEEEEEeecCCCc--eeeeehHHHHHhhc-hh--hhcchHHHHHHHccC----
Confidence            6789999999999999999999877 99999999776542  22223344555554 11  223366666665533    


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      +..+||+||. -|+|+++++  ..+.+++..+..+..||+.-|+.||.. +|||+||||+|+||....+...        
T Consensus       767 ~~S~lv~ey~~~Gtlld~~N--~~~~m~e~lv~~~~~qml~ive~lH~~-~IIHgDiKPDNfll~~~~~~~~--------  835 (974)
T KOG1166|consen  767 NASVLVSEYSPYGTLLDLIN--TNKVMDEYLVMFFSCQMLRIVEHLHAM-GIIHGDIKPDNFLLRREICADS--------  835 (974)
T ss_pred             CcceeeeeccccccHHHhhc--cCCCCCchhhhHHHHHHHHHHHHHHhc-ceecccCCcceeEeecccCCCC--------
Confidence            5688999999 999999998  455699999999999999999999995 9999999999999966321100        


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       836 --------------------------------------------------------------------------------  835 (974)
T KOG1166|consen  836 --------------------------------------------------------------------------------  835 (974)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccc-----cccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~-----~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                           ....++|+|||.|..     ....+...++|-.|-.+|+..|.+++..+|.|.|+.+++
T Consensus       836 ---------------------~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h  894 (974)
T KOG1166|consen  836 ---------------------DSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVH  894 (974)
T ss_pred             ---------------------cccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHH
Confidence                                 023589999999953     122456677899999999999999999999999999999


Q ss_pred             HHHhCCC
Q 045988          355 ELATGDV  361 (530)
Q Consensus       355 elltG~~  361 (530)
                      .||.|++
T Consensus       895 ~mLFG~y  901 (974)
T KOG1166|consen  895 VMLFGKY  901 (974)
T ss_pred             HHHHHHH
Confidence            9999965

>PRK10345 hypothetical protein; Provisional

Probab=99.84  E-value=2.2e-20  Score=175.31  Aligned_cols=130  Identities=15%  Similarity=0.165  Sum_probs=101.8

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEeccc-ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEE
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVC  124 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~  124 (530)
                      -.+.||+|+||.||.  +..++.. +||++... ....+.+.+|+.+++.|.|.+ ..||||+++++++......+..+.
T Consensus         6 ~~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~-~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          6 EQSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRL-IDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             CcceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccC-CCCcccceeeEEEEeCCCCeEEEE
Confidence            357899999999995  6777666 68987654 234567899999999997744 479999999999997532233355


Q ss_pred             EEEecc---CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHH-HHHHhhCCceeccCCCCcEEEee
Q 045988          125 MVFEYL---GENLLTLIKYADYRGVPLHMVKEICFHILVGL-DHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       125 lVmE~~---~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL-~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      +||||+   +++|.+++...   .+++.  ..++.|++.++ +|||++ +||||||||+|||++.
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~-~IvhrDlKp~NILl~~  140 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDN-RIVTMELKPQNILCQR  140 (210)
T ss_pred             EEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEEec
Confidence            899995   48999999642   35555  46688888888 999997 9999999999999965

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.84  E-value=2.6e-20  Score=173.58  Aligned_cols=122  Identities=19%  Similarity=0.233  Sum_probs=90.4

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEecccccc---------------------------hHHHHHHHHHHHHhhcC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY---------------------------TEAALDEIKILKQIAEG   98 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~---------------------------~~~~~~Ei~il~~l~~~   98 (530)
                      +.+.||+|+||+||+|.+. +|+.||||+++.....                           .....+|.+.+.++.+.
T Consensus         1 ~~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~   79 (190)
T cd05145           1 INGCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEA   79 (190)
T ss_pred             CCceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            3578999999999999987 8999999998754210                           11235789999999654


Q ss_pred             CCCCCcceeEecceeeecCCCCcEEEEEEeccC-cCHHHH-HHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCceecc
Q 045988           99 DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLG-ENLLTL-IKYADYRGVPLHMVKEICFHILVGLDHLHR-ELSIIHTD  175 (530)
Q Consensus        99 ~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~-~~L~~~-i~~~~~~~l~~~~~~~i~~qll~aL~~LH~-~~gIvHrD  175 (530)
                      +      |.....+..      ...||||||++ +++... +.   ...++...+..++.|++.+|.+||+ + ||+|||
T Consensus        80 ~------i~~p~~~~~------~~~~lVmE~~~g~~~~~~~l~---~~~~~~~~~~~i~~~l~~~l~~lH~~~-givHrD  143 (190)
T cd05145          80 G------VPVPEPILL------KKNVLVMEFIGDDGSPAPRLK---DVPLEEEEAEELYEQVVEQMRRLYQEA-GLVHGD  143 (190)
T ss_pred             C------CCCceEEEe------cCCEEEEEEecCCCchhhhhh---hccCCHHHHHHHHHHHHHHHHHHHHhC-CEecCC
Confidence            3      322222221      12489999994 434332 32   2347888999999999999999999 7 999999


Q ss_pred             CCCCcEEEe
Q 045988          176 LKPENVLLM  184 (530)
Q Consensus       176 IKp~NILl~  184 (530)
                      |||+|||++
T Consensus       144 lkP~NIll~  152 (190)
T cd05145         144 LSEYNILYH  152 (190)
T ss_pred             CChhhEEEE
Confidence            999999994

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.82  E-value=7.1e-20  Score=168.92  Aligned_cols=117  Identities=21%  Similarity=0.158  Sum_probs=89.2

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchH-----HHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE-----AALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~-----~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +.+...|++|+||+||++..  .+..|+.+-+........     .+.+|+++|++|.+     |++|++++++      
T Consensus         4 ~~~~~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~-----~~~vP~ll~~------   70 (218)
T PRK12274          4 PAVNEPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDG-----LPRTPRLLHW------   70 (218)
T ss_pred             cccceeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCC-----CCCCCEEEEE------
Confidence            34678999999999998854  678888887666554333     57889999999963     4567777764      


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccC-CCCcEEEee
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDL-KPENVLLMS  185 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDI-Kp~NILl~~  185 (530)
                        ...|++|||+ |.+|...+.        .. ...++.|++.+|.+||++ ||+|||| ||+|||++.
T Consensus        71 --~~~~lvmeyI~G~~L~~~~~--------~~-~~~~~~qi~~~L~~lH~~-GIvHrDL~kp~NILv~~  127 (218)
T PRK12274         71 --DGRHLDRSYLAGAAMYQRPP--------RG-DLAYFRAARRLLQQLHRC-GVAHNDLAKEANWLVQE  127 (218)
T ss_pred             --cCEEEEEeeecCccHHhhhh--------hh-hHHHHHHHHHHHHHHHHC-cCccCCCCCcceEEEcC
Confidence              2369999999 767754321        11 235788999999999997 9999999 799999954

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=2.9e-20  Score=187.80  Aligned_cols=248  Identities=20%  Similarity=0.305  Sum_probs=165.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCC---CeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecc-----
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD-----  111 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~-----  111 (530)
                      ...+.+.+..+.++++.++...-..+   ...++-|...... .......+++-.+.-..|.     +..+ +.+     
T Consensus       243 ~~s~~~~k~~~~~~~~~~~~~q~~~~~s~~E~~~s~~~~~d~~~~~~~~~r~~~~l~~~~~~-----~~s~-~~d~~~s~  316 (516)
T KOG1033|consen  243 SGSSSISKSSERVSSGIVFEKQGKNNSSLREWLKSKRADVDSLCACKYTFRQLGVLVDSSHS-----NRSI-LEDLRPSL  316 (516)
T ss_pred             cccccccccccccccCCchhhhhcccchhhhhccchhhhccchhhhhhhhhhhhheeccccC-----Cccc-ccCCCCch
Confidence            34566777788888887777654333   3344444333332 2233344455555444332     2222 111     


Q ss_pred             --eeee-cCCCCcEEEEEEecc-CcCHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          112 --HFKH-SGPNGQHVCMVFEYL-GENLLTLIKYADY-RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       112 --~~~~-~~~~~~~~~lVmE~~-~~~L~~~i~~~~~-~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                        .+.. ......++||.|++| ..+|.+++..... ...+...++.++.|+..|++|   + |.+|||+||.||++.. 
T Consensus       317 ~~~~~~~~v~~~~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k-~~ihrdlkp~nif~~~-  391 (516)
T KOG1033|consen  317 FESSKRNKVGKKVYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K-GLIHRDLKPSNIFFSD-  391 (516)
T ss_pred             hhhccccccccccchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c-cchhhhcccccccccc-
Confidence              1111 101124799999999 8899999864332 336778899999999999999   6 9999999999999844 


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       392 --------------------------------------------------------------------------------  391 (516)
T KOG1033|consen  392 --------------------------------------------------------------------------------  391 (516)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---------cccCCCCCCCCccCChhhcC
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---------KQFTNDIQTRQYRCPEVLLG  337 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---------~~~~~~~gt~~y~aPE~l~~  337 (530)
                                                         +..+||+|||+.....         ...+..+||.+||+||.+.+
T Consensus       392 -----------------------------------d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g  436 (516)
T KOG1033|consen  392 -----------------------------------DDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRG  436 (516)
T ss_pred             -----------------------------------chhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhh
Confidence                                               4468999999985422         23566789999999999999


Q ss_pred             CCCCCcchhHHHHHHHHHHHhC-CCCCCCCCCCCCCCChHHHHHHHHH-hCCCchhhhcCCCcccccccccCccccchhc
Q 045988          338 SKYSTPADLWSFACICFELATG-DVLFDPHSGDNYDRDEDHLALMMEL-LGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL  415 (530)
Q Consensus       338 ~~~~~~~DiWSlG~il~elltG-~~PF~~~~~~~~~~~~~~l~~i~~~-~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (530)
                      ..|+.++||||||+|||||+.- ...|            +..+.+..+ -|.+|+.++                      
T Consensus       437 ~~y~~kvdIyaLGlil~EL~~~f~T~~------------er~~t~~d~r~g~ip~~~~----------------------  482 (516)
T KOG1033|consen  437 QQYSEKVDIYALGLILAELLIQFSTQF------------ERIATLTDIRDGIIPPEFL----------------------  482 (516)
T ss_pred             hhhhhhcchhhHHHHHHHHHHHhccHH------------HHHHhhhhhhcCCCChHHh----------------------
Confidence            9999999999999999999982 2223            111111111 122222211                      


Q ss_pred             ccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                                       ...+.-.+||.+||...|.+||++.+.--|+|.
T Consensus       483 -----------------~d~p~e~~ll~~lls~~p~~RP~~~~~~~~~~~  515 (516)
T KOG1033|consen  483 -----------------QDYPEEYTLLQQLLSPSPEERPSAIEVALHEFL  515 (516)
T ss_pred             -----------------hcCcHHHHHHHHhcCCCcccCchHHHHhhhhhc
Confidence                             112455699999999999999998888888875

>smart00090 RIO RIO-like kinase

Probab=99.77  E-value=1.5e-18  Score=166.83  Aligned_cols=136  Identities=19%  Similarity=0.196  Sum_probs=98.6

Q ss_pred             ccCcEeeCC-CEEEEEEeccccceEEEEEE-eCCCCeEEEEEEeccccc-------------------------chHHHH
Q 045988           34 RMGDTFKNG-RYVVQSKLGWGHFSTVWLAW-DTQTSHYVALKVQKSAQH-------------------------YTEAAL   86 (530)
Q Consensus        34 ~~g~~~~~~-~y~i~~~LG~G~fg~Vy~a~-~~~~~~~vAiK~~~~~~~-------------------------~~~~~~   86 (530)
                      .+-..++.+ -|.+.+.||+|+||.||+|. +..+|+.||||+++....                         ....+.
T Consensus        19 ~~~~~~~~~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (237)
T smart00090       19 ALYSLLNRGILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAE   98 (237)
T ss_pred             HHHHHHhcCchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHH
Confidence            333444444 58899999999999999998 677899999998875421                         012346


Q ss_pred             HHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Q 045988           87 DEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL  165 (530)
Q Consensus        87 ~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~L  165 (530)
                      +|+.+++++.+.    ...+.+++..        ...+|||||+ +.+|...+.  ....+....+..++.||+.+|++|
T Consensus        99 ~E~~~L~~L~~~----~i~~p~~~~~--------~~~~lV~E~~~g~~L~~~~~--~~~~~~~~~~~~i~~qi~~~l~~L  164 (237)
T smart00090       99 KEFRNLQRLYEA----GVPVPKPIAW--------RRNVLVMEFIGGDGLPAPRL--KDVEPEEEEEFELYDDILEEMRKL  164 (237)
T ss_pred             HHHHHHHHHHhc----CCCCCeeeEe--------cCceEEEEEecCCccccccc--ccCCcchHHHHHHHHHHHHHHHHH
Confidence            799999999642    1223333332        1248999999 445554432  122356667889999999999999


Q ss_pred             HhhCC-ceeccCCCCcEEEe
Q 045988          166 HRELS-IIHTDLKPENVLLM  184 (530)
Q Consensus       166 H~~~g-IvHrDIKp~NILl~  184 (530)
                      |.+ | |+||||||+|||++
T Consensus       165 H~~-g~iiH~Dikp~NIli~  183 (237)
T smart00090      165 YKE-GELVHGDLSEYNILVH  183 (237)
T ss_pred             Hhc-CCEEeCCCChhhEEEE
Confidence            997 9 99999999999994

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=8.4e-19  Score=188.71  Aligned_cols=258  Identities=22%  Similarity=0.299  Sum_probs=193.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCC-CCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQ-TSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~-~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ...|.+.+.||+|+|+.|-++.... +...+|.|.+....   ........|..+-+.+.     .|.|++.+++...  
T Consensus        19 ~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s-----~h~n~~~~~~~~~--   91 (601)
T KOG0590|consen   19 NSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLS-----KHSNTVHMIEPSS--   91 (601)
T ss_pred             cccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCcccccccccc-----ccccccccCCccC--
Confidence            4679999999999999999987643 35677777665543   22333444777766663     3889999999988  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH-hhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH-RELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH-~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                        .....+++++|. +++++..+......+.+...+..++.|+..+|.|+| .. ++.||||||+|.+++.         
T Consensus        92 --~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~-~~~h~~ikP~n~~l~~---------  159 (601)
T KOG0590|consen   92 --SPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPEN-GVTHRDIKPSNSLLDE---------  159 (601)
T ss_pred             --CCcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCccc-ccccCCCCCccchhcc---------
Confidence              447899999999 888888773222225788899999999999999999 76 9999999999999855         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (601)
T KOG0590|consen  160 --------------------------------------------------------------------------------  159 (601)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhccc-ceEEecCCccccccc------ccCCCCC-CCCccCChhhcCCC-CCCcch
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDL-KCKLVDFGNACWTYK------QFTNDIQ-TRQYRCPEVLLGSK-YSTPAD  345 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vkL~DfG~a~~~~~------~~~~~~g-t~~y~aPE~l~~~~-~~~~~D  345 (530)
                                                 .+ .++++|||+|.....      .....+| ++.|+|||.+.+.. .+...|
T Consensus       160 ---------------------------s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d  212 (601)
T KOG0590|consen  160 ---------------------------SGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVD  212 (601)
T ss_pred             ---------------------------CCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcc
Confidence                                       22 579999999965433      1334578 99999999999854 578899


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      +||+|+++..+++|..||.-......    ..                       ..|..               .+ ..
T Consensus       213 ~~S~g~~l~~~~~g~~p~~~~~~~~~----~~-----------------------~~~~~---------------~~-~~  249 (601)
T KOG0590|consen  213 VWSLGIVLSAMLTGELPWDFPSRKDG----RY-----------------------SSWKS---------------NK-GR  249 (601)
T ss_pred             cccccccccccccCCCCccccccccc----cc-----------------------eeecc---------------cc-cc
Confidence            99999999999999999964331110    00                       00000               00 00


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      .....+...+....+++.++|..+|..|.+.+++-.+||+..
T Consensus       250 ~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  250 FTQLPWNSISDQAHDLLHKILKENPSNRLSIEELKLDNWLSS  291 (601)
T ss_pred             cccCccccCChhhhhcccccccCCchhccccccccccccccc
Confidence            012334456678889999999999999999999999999988

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.71  E-value=2.6e-17  Score=154.45  Aligned_cols=120  Identities=30%  Similarity=0.343  Sum_probs=89.8

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-----------------------chHHHHHHHHHHHHhhcCCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-----------------------YTEAALDEIKILKQIAEGDP  100 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-----------------------~~~~~~~Ei~il~~l~~~~~  100 (530)
                      |.+.+.||+|+||.||+|... +|+.||||++.....                       ......+|+.++..+.+.+.
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhcCCccccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            888999999999999999864 799999998664321                       11235678999988865421


Q ss_pred             CCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCC
Q 045988          101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPE  179 (530)
Q Consensus       101 ~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~  179 (530)
                          .++.+++.        ...++||||+ +++|..+..        ......++.+|+.++.++|+. ||+||||||+
T Consensus        96 ----~v~~~~~~--------~~~~lv~e~~~g~~L~~~~~--------~~~~~~~~~~i~~~l~~lh~~-gi~H~Dl~p~  154 (198)
T cd05144          96 ----PVPKPIDW--------NRHAVVMEYIDGVELYRVRV--------LEDPEEVLDEILEEIVKAYKH-GIIHGDLSEF  154 (198)
T ss_pred             ----CCCceeec--------CCceEEEEEeCCcchhhccc--------cccHHHHHHHHHHHHHHHHHC-CCCcCCCCcc
Confidence                23333331        2458999999 667655432        134567889999999999996 9999999999


Q ss_pred             cEEEee
Q 045988          180 NVLLMS  185 (530)
Q Consensus       180 NILl~~  185 (530)
                      ||+++.
T Consensus       155 Nill~~  160 (198)
T cd05144         155 NILVDD  160 (198)
T ss_pred             cEEEcC
Confidence            999954

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.70  E-value=9.5e-18  Score=155.64  Aligned_cols=243  Identities=17%  Similarity=0.226  Sum_probs=172.7

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +...++-+|.+...|..|+++..  |..++.|+++-.   ......+..|.-.|+.+      .||||+.+++.+..+  
T Consensus       190 ~~lnl~tkl~e~hsgelwrgrwq--gndivakil~vr~~t~risrdfneefp~lrif------shpnilpvlgacnsp--  259 (448)
T KOG0195|consen  190 SSLNLITKLAESHSGELWRGRWQ--GNDIVAKILNVREVTARISRDFNEEFPALRIF------SHPNILPVLGACNSP--  259 (448)
T ss_pred             hhhhhhhhhccCCCccccccccc--CcchhhhhhhhhhcchhhcchhhhhCcceeee------cCCchhhhhhhccCC--
Confidence            45567889999999999999654  444666765533   23345666777777766      788999999999854  


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceec-cCCCCcEEEeeccCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHT-DLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHr-DIKp~NILl~~~~~~~~~~~~~  196 (530)
                        .++.++..|| -++|+.++.....--++..++.+++..|+.|++|||+--.++-| -|....++|+...         
T Consensus       260 --pnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedl---------  328 (448)
T KOG0195|consen  260 --PNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDL---------  328 (448)
T ss_pred             --CCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchh---------
Confidence              7899999999 89999999755444477889999999999999999983233333 4566677775521         


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       329 --------------------------------------------------------------------------------  328 (448)
T KOG0195|consen  329 --------------------------------------------------------------------------------  328 (448)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCC---CCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKY---STPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~---~~~~DiWSlG~il  353 (530)
                                               ...+..+|--++..    .....-+|.||+||.+..++-   -.++|+|||++++
T Consensus       329 -------------------------tarismad~kfsfq----e~gr~y~pawmspealqrkped~n~raadmwsfaill  379 (448)
T KOG0195|consen  329 -------------------------TARISMADTKFSFQ----EVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILL  379 (448)
T ss_pred             -------------------------hhheecccceeeee----ccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHH
Confidence                                     12233444333321    112334789999999988764   3578999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |||.|...||...++.+..      .. +.+-|                                       -....++.
T Consensus       380 wel~trevpfadlspmecg------mk-ialeg---------------------------------------lrv~ippg  413 (448)
T KOG0195|consen  380 WELNTREVPFADLSPMECG------MK-IALEG---------------------------------------LRVHIPPG  413 (448)
T ss_pred             HHhhccccccccCCchhhh------hh-hhhcc---------------------------------------ccccCCCC
Confidence            9999999999765532210      00 00000                                       02246778


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHh
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCL  460 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL  460 (530)
                      ++..+..|+.-|+.-||.+||..+.++
T Consensus       414 is~hm~klm~icmnedpgkrpkfdmiv  440 (448)
T KOG0195|consen  414 ISRHMNKLMNICMNEDPGKRPKFDMIV  440 (448)
T ss_pred             ccHHHHHHHHHHhcCCCCcCCCcceeh
Confidence            889999999999999999999987654

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.69  E-value=2.2e-16  Score=149.57  Aligned_cols=118  Identities=23%  Similarity=0.248  Sum_probs=90.5

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEeccccc---------chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +.||+|++|.||+|..  .|..|++|+......         ....+.+|+.++..+.+.      +|.....++..   
T Consensus         2 ~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~------~i~~p~~~~~~---   70 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKA------GVNVPAVYFVD---   70 (211)
T ss_pred             cccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCeEEEEe---
Confidence            5799999999999976  677899997553211         124567899999999543      34433333432   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                       ....++||||+ |.+|.+++....     . ....++.+|+.+|.+||+. |++|||++|.|||++
T Consensus        71 -~~~~~lv~e~~~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH~~-~i~H~Dl~p~Nil~~  129 (211)
T PRK14879         71 -PENFIIVMEYIEGEPLKDLINSNG-----M-EELELSREIGRLVGKLHSA-GIIHGDLTTSNMILS  129 (211)
T ss_pred             -CCCCEEEEEEeCCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHhC-CcccCCCCcccEEEE
Confidence             24678999999 889988875321     2 7889999999999999997 999999999999994

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.67  E-value=3.8e-16  Score=146.54  Aligned_cols=114  Identities=19%  Similarity=0.250  Sum_probs=85.1

Q ss_pred             EeccccceEEEEEEeCCCCeEEEEEEecccc---------cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           49 KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        49 ~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .||+|+||.||+|.  .++..|++|+.....         .....+.+|++++..+.+.+    -++..++...      
T Consensus         1 ~ig~G~~~~vy~~~--~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~----i~~p~~~~~~------   68 (199)
T TIGR03724         1 LIAKGAEAIIYLGD--FLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAG----VNTPVVYDVD------   68 (199)
T ss_pred             CCCCCceEEEEEee--cCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCC----CCCCEEEEEE------
Confidence            38999999999997  467889999754321         11245678999999996543    1233333332      


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                      ....++||||+ |++|.+++....   .      .++.|++.+|.+||+. |++|||++|+|||++
T Consensus        69 ~~~~~lv~e~~~g~~l~~~~~~~~---~------~~~~~i~~~l~~lH~~-gi~H~Dl~~~Nil~~  124 (199)
T TIGR03724        69 PDNKTIVMEYIEGKPLKDVIEEGN---D------ELLREIGRLVGKLHKA-GIVHGDLTTSNIIVR  124 (199)
T ss_pred             CCCCEEEEEEECCccHHHHHhhcH---H------HHHHHHHHHHHHHHHC-CeecCCCCcceEEEE
Confidence            24568999999 888888764311   1      7899999999999996 999999999999994

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.65  E-value=7.2e-16  Score=166.32  Aligned_cols=119  Identities=19%  Similarity=0.228  Sum_probs=89.0

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEE--ecccc-------cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQ-------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~--~~~~~-------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..|...++||+|+||+||++......  +++|+  .+...       ...+.+.+|+++++.+.      |++|+....+
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~--~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------~~~i~~p~~~  404 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGRD--AVIKERVPKGYRHPELDERLRTERTRAEARLLSEAR------RAGVPTPVIY  404 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCcc--ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhc------ccCCCeeEEE
Confidence            45567899999999999999764433  44442  22111       12345778999999994      5556655544


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEE
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL  183 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl  183 (530)
                      +..    ....++||||+ +++|.+++.          ....++.|++.+|.+||+. ||+||||||+|||+
T Consensus       405 ~~~----~~~~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~-giiHrDlkp~NILl  461 (535)
T PRK09605        405 DVD----PEEKTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKA-GIVHGDLTTSNFIV  461 (535)
T ss_pred             EEe----CCCCEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhC-CCccCCCChHHEEE
Confidence            442    24578999999 889988774          3567899999999999997 99999999999999

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.63  E-value=1.5e-15  Score=140.99  Aligned_cols=120  Identities=26%  Similarity=0.342  Sum_probs=81.8

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccchHH-------------------------HHHHHHHHHHhhcCCCC
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA-------------------------ALDEIKILKQIAEGDPD  101 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~-------------------------~~~Ei~il~~l~~~~~~  101 (530)
                      .+.||+|+||+||+|.+. +++.||||++.........                         ...|...+.++.+..  
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~--   78 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAG--   78 (187)
T ss_pred             CcccccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcC--
Confidence            467999999999999876 7899999987754221111                         134666666664321  


Q ss_pred             CCcceeEecceeeecCCCCcEEEEEEeccCc-CHH-HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCceeccCCC
Q 045988          102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYLGE-NLL-TLIKYADYRGVPLHMVKEICFHILVGLDHLHR-ELSIIHTDLKP  178 (530)
Q Consensus       102 ~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~-~L~-~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~-~~gIvHrDIKp  178 (530)
                        ..+.+.+..        ...++||||+.+ .+. ..+....   .. ..+..++.+++.++.++|. . ||+||||||
T Consensus        79 --~~~~~~~~~--------~~~~lv~e~~~g~~~~~~~l~~~~---~~-~~~~~~~~~~~~~l~~lh~~~-~ivH~Dl~p  143 (187)
T cd05119          79 --VPVPKPIDL--------NRHVLVMEFIGGDGIPAPRLKDVR---LL-EDPEELYDQILELMRKLYREA-GLVHGDLSE  143 (187)
T ss_pred             --CCCCceEec--------CCCEEEEEEeCCCCccChhhhhhh---hc-ccHHHHHHHHHHHHHHHhhcc-CcCcCCCCh
Confidence              123333332        235899999944 221 1111100   11 6688999999999999998 7 999999999


Q ss_pred             CcEEEe
Q 045988          179 ENVLLM  184 (530)
Q Consensus       179 ~NILl~  184 (530)
                      +|||++
T Consensus       144 ~Nili~  149 (187)
T cd05119         144 YNILVD  149 (187)
T ss_pred             hhEEEE
Confidence            999995

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.59  E-value=6.7e-15  Score=151.90  Aligned_cols=200  Identities=22%  Similarity=0.301  Sum_probs=144.6

Q ss_pred             CCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       102 ~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                      .|.|+.++++...    ++...++|.+|| .|+|.+.+.... ..++......+++.|+.||+|||......|+.++..|
T Consensus         5 ~h~n~~~f~g~~~----~~~~~~~i~~~c~rGsl~D~i~~~~-~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~n   79 (484)
T KOG1023|consen    5 DHDNLNKFIGASV----DGPEMIVIWEYCSRGSLLDILSNED-IKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSN   79 (484)
T ss_pred             chhhhhhheeeEe----cCCceEEEEeeecCccHHhHHhccc-cCccHHHHHHHHHHHHHHHHHHhcCcceeeeeecccc
Confidence            6888999999998    448899999999 999999997533 3477778889999999999999986333999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      ++++.                                                                           
T Consensus        80 Clvd~---------------------------------------------------------------------------   84 (484)
T KOG1023|consen   80 CLVDS---------------------------------------------------------------------------   84 (484)
T ss_pred             ceeee---------------------------------------------------------------------------
Confidence            99976                                                                           


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhh
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVL  335 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l  335 (530)
                                                               .+.+||.|||+.......     .....-..-|.|||.+
T Consensus        85 -----------------------------------------~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPell  123 (484)
T KOG1023|consen   85 -----------------------------------------RWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELL  123 (484)
T ss_pred             -----------------------------------------eEEEEechhhhcccccccccccccchhHHHHhccCHHHh
Confidence                                                     678999999998665321     1111123468999999


Q ss_pred             cCCC-------CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhC--CCchhhhcCCCccccccccc
Q 045988          336 LGSK-------YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG--MMPRKIAFGGRYSRDFFNRH  406 (530)
Q Consensus       336 ~~~~-------~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g--~~p~~~~~~~~~~~~~~~~~  406 (530)
                      .+..       .+.+.||||+|++++|+++..-||+......     +....+..+.+  ..+                 
T Consensus       124 r~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~-----~~~eii~~~~~~~~~~-----------------  181 (484)
T KOG1023|consen  124 RGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVE-----DPDEIILRVKKGGSNP-----------------  181 (484)
T ss_pred             cccccccccccccccCCeehHHHHHHHHHhccCccccccccC-----ChHHHHHHHHhcCCCC-----------------
Confidence            7642       3567899999999999999999997533221     11122222211  100                 


Q ss_pred             CccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                   +.+.+..   . ....+++..++.+||..+|.+||+++++-.
T Consensus       182 -------------~rP~i~~---~-~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~  219 (484)
T KOG1023|consen  182 -------------FRPSIEL---L-NELPPELLLLVARCWEEIPEKRPSIEQIRS  219 (484)
T ss_pred             -------------cCcchhh---h-hhcchHHHHHHHHhcccChhhCccHHHHHh
Confidence                         0000000   0 023347889999999999999999998765

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.59  E-value=2.4e-14  Score=137.90  Aligned_cols=124  Identities=18%  Similarity=0.184  Sum_probs=85.9

Q ss_pred             EEec-cccceEEEEEEeCCCCeEEEEEEecccc--------------cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           48 SKLG-WGHFSTVWLAWDTQTSHYVALKVQKSAQ--------------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        48 ~~LG-~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--------------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..|| .|+.|+||.+..  .+..++||.+....              .....+.+|+.++.+|.+.+.    .+++.+++
T Consensus        37 ~~lg~~~g~gtv~~v~~--~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi----~vP~pl~~  110 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT--PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGL----PVPRPIAA  110 (239)
T ss_pred             ceeecCCCCccEEEEEe--CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCC----CCceeEee
Confidence            4566 777888888854  37789999775311              123467889999999976431    24555555


Q ss_pred             eeecCCCCcEEEEEEecc-C-cCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          113 FKHSGPNGQHVCMVFEYL-G-ENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~-~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      ...........+||||++ + .+|.+++..   ..+++.    .+.||+.+|.+||++ ||+||||||+|||++.
T Consensus       111 ~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~---~~l~~~----~~~~i~~~l~~lH~~-GI~HrDlkp~NILv~~  177 (239)
T PRK01723        111 RVVRHGLFYRADILIERIEGARDLVALLQE---APLSEE----QWQAIGQLIARFHDA-GVYHADLNAHNILLDP  177 (239)
T ss_pred             eeeecCcceeeeEEEEecCCCCCHHHHHhc---CCCCHH----HHHHHHHHHHHHHHC-CCCCCCCCchhEEEcC
Confidence            433211112346999999 4 588888753   235544    367899999999997 9999999999999954

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.6e-15  Score=156.49  Aligned_cols=256  Identities=23%  Similarity=0.276  Sum_probs=186.2

Q ss_pred             eeCCCEEEEEEecc--ccceEEEEEEe--CCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGW--GHFSTVWLAWD--TQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~--G~fg~Vy~a~~--~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +....|.+.+.+|.  |.+|.||.+..  ..++..+|+|.-+.-   ......-.+|....+++     ..|++.++.+.
T Consensus       111 ~~~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i-----~~~~~~v~~~~  185 (524)
T KOG0601|consen  111 FFDQRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKI-----DSHENPVRDSP  185 (524)
T ss_pred             hhhhhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhccccc-----CccccccccCc
Confidence            34677889999999  99999999988  888999999963321   12223334555544444     48999999888


Q ss_pred             eeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHH----HHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          112 HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILV----GLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~----aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      .+.    .+...|+-+|+|+.+|..+... ...-++...++.++.+...    ||.++|+. +|+|-|+||+||++... 
T Consensus       186 ~~e----~~~~lfiqtE~~~~sl~~~~~~-~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~-~~~~~~~kp~~i~~~~~-  258 (524)
T KOG0601|consen  186 AWE----GSGILFIQTELCGESLQSYCHT-PCNFLPDNLLWNSLRDWLSRDVTALSHLHSN-NIVHDDLKPANIFTTSD-  258 (524)
T ss_pred             ccc----cCCcceeeeccccchhHHhhhc-ccccCCchhhhhHHhhhhhcccccccccCCC-cccccccchhheecccc-
Confidence            888    5689999999999888887753 2233888999999999999    99999997 99999999999998541 


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (524)
T KOG0601|consen  259 --------------------------------------------------------------------------------  258 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--------cCCCCCCCCccCChhhcCCC
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--------FTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--------~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                        -...+++|||+.......        .....|..-|++||++.+ -
T Consensus       259 ----------------------------------~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~-l  303 (524)
T KOG0601|consen  259 ----------------------------------WTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNG-L  303 (524)
T ss_pred             ----------------------------------cceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhcc-c
Confidence                                              034677777776543221        111246778999999866 5


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      ++...||+++|.++.+-.+|..++...-....    .+                               +++.       
T Consensus       304 ~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W----~~-------------------------------~r~~-------  341 (524)
T KOG0601|consen  304 ATFASDIFSLGEVILEAILGSHLPSVGKNSSW----SQ-------------------------------LRQG-------  341 (524)
T ss_pred             cchHhhhcchhhhhHhhHhhcccccCCCCCCc----cc-------------------------------cccc-------
Confidence            89999999999999999998776632210000    00                               0000       


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                           ..+.++....+..+...+..|+..+|..|+++..+++|+++...
T Consensus       342 -----~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~  385 (524)
T KOG0601|consen  342 -----YIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSK  385 (524)
T ss_pred             -----cCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccch
Confidence                 01112223345566679999999999999999999999998754

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.55  E-value=3.8e-14  Score=125.75  Aligned_cols=120  Identities=24%  Similarity=0.276  Sum_probs=93.7

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      +++.||.|.++.||++....  ..+++|+...... ...+.+|+.+++.+.+.    ..++++++.++..    ....++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~--~~~~iK~~~~~~~-~~~~~~e~~~~~~l~~~----~~~~p~~~~~~~~----~~~~~~   70 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD--EDYVLKINPSREK-GADREREVAILQLLARK----GLPVPKVLASGES----DGWSYL   70 (155)
T ss_pred             cceecccccccceEEEEecC--CeEEEEecCCCCc-hhHHHHHHHHHHHHHHc----CCCCCeEEEEcCC----CCccEE
Confidence            46889999999999998643  7899998876543 56788999999999753    2447777776653    367899


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh--CCceeccCCCCcEEEee
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRE--LSIIHTDLKPENVLLMS  185 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~--~gIvHrDIKp~NILl~~  185 (530)
                      +|||+ +..+..+         +......++.+++.+|++||..  .+++|+|++|+|||+..
T Consensus        71 v~e~~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~  124 (155)
T cd05120          71 LMEWIEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDD  124 (155)
T ss_pred             EEEecCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEEC
Confidence            99999 4444332         4566778899999999999973  16999999999999954

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.50  E-value=6.2e-15  Score=159.45  Aligned_cols=282  Identities=20%  Similarity=0.233  Sum_probs=180.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccc----hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY----TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~----~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      -+.+.+.+.+-+|+++.++.+.-..+|...++|+......-    .+....+-.++..      ..+|.++.....|.  
T Consensus       803 ~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~------p~~P~v~~~~~s~~--  874 (1205)
T KOG0606|consen  803 PDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILIT------PRSPAVVRSFPSFP--  874 (1205)
T ss_pred             CccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCcccc------CCCCceecccCCCC--
Confidence            46788899999999999999988888988888876654321    1222222222211      14566776666544  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        -....+|||+|+ +++|...+....  +.+.+-++.++..+..+++|||+. .++|||++|.|+|+.......     
T Consensus       875 --~rsP~~L~~~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s~-~r~h~~~~p~~~l~~~~gh~~-----  944 (1205)
T KOG0606|consen  875 --CRSPLPLVGHYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHSS-LRKHRDLKPDSLLIAYDGHRP-----  944 (1205)
T ss_pred             --CCCCcchhhHHhccCCchhhhhcCC--CcccccccchhHHHHhhhhccccc-hhhcccccccchhhcccCCcc-----
Confidence              457799999999 888888876433  477888889999999999999986 799999999999985421100     


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                     +..+...                          +....+.     ...                 
T Consensus       945 ---------------l~~~~t~--------------------------~~vg~~~-----p~~-----------------  961 (1205)
T KOG0606|consen  945 ---------------LTDFGTL--------------------------SKVGLIP-----PTT-----------------  961 (1205)
T ss_pred             ---------------cCccccc--------------------------ccccccc-----CcC-----------------
Confidence                           0000000                          0000000     000                 


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc-------ccccCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT-------YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~-------~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                        ...|.++                   .+..-.++.+...       .......+||+.|.+||.+++...+..+|+|+
T Consensus       962 --~~sg~~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~ 1020 (1205)
T KOG0606|consen  962 --DLSGPSS-------------------SGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWS 1020 (1205)
T ss_pred             --Ccccccc-------------------cCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhh
Confidence              0000000                   0000111111000       01123457899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      +|+++++.++|.+||....+..          +++-+....                          ..|         .
T Consensus      1021 ~g~~l~e~l~g~pp~na~tpq~----------~f~ni~~~~--------------------------~~~---------p 1055 (1205)
T KOG0606|consen 1021 SGVCLFEVLTGIPPFNAETPQQ----------IFENILNRD--------------------------IPW---------P 1055 (1205)
T ss_pred             hhhhhhhhhcCCCCCCCcchhh----------hhhccccCC--------------------------CCC---------C
Confidence            9999999999999996443211          111100000                          000         1


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHH---HHhcCCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAA---QCLTHPWINVGP  469 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~---elL~hp~f~~~~  469 (530)
                      .-+...+..+.+++.++|..+|.+|..+.   ++-.||||+...
T Consensus      1056 ~g~~~~s~~aq~~~~~ll~~~~~qr~~a~~~~e~k~~~~~~~~~ 1099 (1205)
T KOG0606|consen 1056 EGPEEGSYEAQDLINRLLTEEPTQRLGAKGAAEVKGHPFFQDVD 1099 (1205)
T ss_pred             CCccccChhhhhhhhhhhccCchhccCcccccccccCCccCCCC
Confidence            22334567889999999999999999987   999999998754

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=4.3e-13  Score=138.64  Aligned_cols=252  Identities=17%  Similarity=0.110  Sum_probs=179.4

Q ss_pred             cEeeCCCEEEEEEeccccceEEEEEEeC-CCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           37 DTFKNGRYVVQSKLGWGHFSTVWLAWDT-QTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        37 ~~~~~~~y~i~~~LG~G~fg~Vy~a~~~-~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ......+|..+..||.|.|+.|+.+... .++..|++|...+..   ........|+.+...|.     .|.+++.++..
T Consensus       260 ~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~-----~~~~~~g~~~~  334 (524)
T KOG0601|consen  260 TSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILG-----SHLPSVGKNSS  334 (524)
T ss_pred             ceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhh-----cccccCCCCCC
Confidence            3445689999999999999999998755 678999999765532   12233456887777775     67778888888


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      |...    ...||-.||| ++++...+.  ....+.+...+.+..|++.|+.++|+. .++|+|+||+||++...     
T Consensus       335 W~~~----r~~~ip~e~~~~~s~~l~~~--~~~~~d~~~~~~~~~q~~~~l~~i~s~-~~~~~d~~psni~i~~~-----  402 (524)
T KOG0601|consen  335 WSQL----RQGYIPLEFCEGGSSSLRSV--TSQMLDEDPRLRLTAQILTALNVIHSK-LFVHLDVKPSNILISND-----  402 (524)
T ss_pred             cccc----ccccCchhhhcCcchhhhhH--HHHhcCcchhhhhHHHHHhccccccch-hhhcccccccceeeccc-----
Confidence            8743    5677999999 666555442  223378889999999999999999996 99999999999999541     


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       403 --------------------------------------------------------------------------------  402 (524)
T KOG0601|consen  403 --------------------------------------------------------------------------------  402 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCcc--CChhhcCCCCCCcchhHHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYR--CPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~--aPE~l~~~~~~~~~DiWSl  349 (530)
                                                    .+..++.|||......-......+.-++.  +++.....++..++|++||
T Consensus       403 ------------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl  452 (524)
T KOG0601|consen  403 ------------------------------GFFSKLGDFGCWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSL  452 (524)
T ss_pred             ------------------------------hhhhhccccccccccceecccccccccccccchhhccccccccccccccc
Confidence                                          13457888887753222222223333444  5555566778999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      |..+++.++|.+.-....         +                                          ...+....+.
T Consensus       453 ~~~~~e~~~~~~ls~~~~---------~------------------------------------------~~~i~~~~~p  481 (524)
T KOG0601|consen  453 GLSVDEAITGSPLSESGV---------Q------------------------------------------SLTIRSGDTP  481 (524)
T ss_pred             cccccccccCcccCcccc---------c------------------------------------------ceeeeccccc
Confidence            999999999865331100         0                                          0111112222


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      .......++..+.+.|+..++..|+.+.++..|.-|-
T Consensus       482 ~~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~~  518 (524)
T KOG0601|consen  482 NLPGLKLQLQVLLKVMINPDRKRRPSAVELSLHSEFY  518 (524)
T ss_pred             CCCchHHhhhhhhhhhcCCccccchhhhhhcccchhh
Confidence            3334447788999999999999999999999987654

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.40  E-value=4.5e-12  Score=134.27  Aligned_cols=130  Identities=14%  Similarity=0.207  Sum_probs=83.2

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-----------------------------------cchHH--
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-----------------------------------HYTEA--   84 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-----------------------------------~~~~~--   84 (530)
                      ..|.. +.||+|++|+||+|+.+.+|+.||||+.+..-                                   .....  
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            45776 89999999999999998889999999987431                                   00111  


Q ss_pred             ----HHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccC----CCCHHHHHHHH
Q 045988           85 ----ALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYR----GVPLHMVKEIC  155 (530)
Q Consensus        85 ----~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~----~l~~~~~~~i~  155 (530)
                          +.+|...+.++...-  .+...+.+-.+|.+-   ....+|||||+ |+.+.++......+    .+.+..+..++
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f--~~~~~v~VP~v~~d~---st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~  273 (537)
T PRK04750        199 DELDLMREAANASQLRRNF--EDSDMLYVPEVYWDY---CSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFF  273 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHc--cCCCCeecceeeccc---CCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHH
Confidence                233444455554321  122234444444321   14578999999 88887643211111    24455566666


Q ss_pred             HHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          156 FHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       156 ~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      .|++       .. |++|+|+||.||+++.
T Consensus       274 ~Qif-------~~-GffHaDpHPGNIlv~~  295 (537)
T PRK04750        274 TQVF-------RD-GFFHADMHPGNIFVSY  295 (537)
T ss_pred             HHHH-------hC-CeeeCCCChHHeEEec
Confidence            6665       35 9999999999999965

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.36  E-value=4.8e-12  Score=132.41  Aligned_cols=128  Identities=17%  Similarity=0.231  Sum_probs=81.3

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccc-----------------------------------------hHHH
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY-----------------------------------------TEAA   85 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~-----------------------------------------~~~~   85 (530)
                      .+.||.|++|+||+|+. .+|+.||||+.+..-..                                         .-.+
T Consensus       122 ~~plasaSigQVh~A~l-~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf  200 (437)
T TIGR01982       122 EKPLAAASIAQVHRARL-VDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDL  200 (437)
T ss_pred             CcceeeeehhheEEEEe-cCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCH
Confidence            36799999999999985 47899999997643100                                         0023


Q ss_pred             HHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHH-HHH
Q 045988           86 LDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILV-GLD  163 (530)
Q Consensus        86 ~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~-aL~  163 (530)
                      .+|.+.+.++..... ++++ +.+-.++...   ....+|||||+ |.+|.++..... .+..   ...++.+++. .+.
T Consensus       201 ~~Ea~n~~~~~~~~~-~~~~-v~vP~v~~~~---~~~~vLvmE~i~G~~L~~~~~~~~-~~~~---~~~ia~~~~~~~l~  271 (437)
T TIGR01982       201 RREAANASELGENFK-NDPG-VYVPEVYWDR---TSERVLTMEWIDGIPLSDIAALDE-AGLD---RKALAENLARSFLN  271 (437)
T ss_pred             HHHHHHHHHHHHhcC-CCCC-EEeCCEehhh---cCCceEEEEeECCcccccHHHHHh-cCCC---HHHHHHHHHHHHHH
Confidence            345555555543221 2232 3333333321   13469999999 888877654321 1222   3345555555 467


Q ss_pred             HHHhhCCceeccCCCCcEEEee
Q 045988          164 HLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       164 ~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      .+|.. |++|+|+||.||++..
T Consensus       272 ql~~~-g~~H~D~hPgNilv~~  292 (437)
T TIGR01982       272 QVLRD-GFFHADLHPGNIFVLK  292 (437)
T ss_pred             HHHhC-CceeCCCCcccEEECC
Confidence            88986 9999999999999954

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.34  E-value=1.4e-11  Score=128.73  Aligned_cols=125  Identities=21%  Similarity=0.265  Sum_probs=94.1

Q ss_pred             CEEEEEEeccccceEEE-EEEeCCCCeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           43 RYVVQSKLGWGHFSTVW-LAWDTQTSHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy-~a~~~~~~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      -|.+ ...+-++.+ || .|..+.++.+|.+.+++.... ..+...+-++-|+.|      .||||+++++.++.    .
T Consensus        14 pY~l-e~~~~~~~a-~~~~~t~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtl------RHP~Il~yL~t~e~----~   81 (690)
T KOG1243|consen   14 PYDL-EETAFSSEA-LWPDGTRKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTL------RHPNILSYLDTTEE----E   81 (690)
T ss_pred             Cccc-ccccCCCcc-cccccceeccCCceEEEEEeCCCchhhHHHHHHHHHhhhc------cCchhhhhhhhhcc----c
Confidence            4666 444444444 45 466778899999998876654 233455667777777      78899999999994    4


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      ..+|||+|.+. -|..+++.     +....+...++||+.||.|||..++++|++|.-+-|+|+.
T Consensus        82 ~~~ylvTErV~-Pl~~~lk~-----l~~~~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~  140 (690)
T KOG1243|consen   82 GTLYLVTERVR-PLETVLKE-----LGKEEVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNE  140 (690)
T ss_pred             CceEEEeeccc-cHHHHHHH-----hHHHHHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcC
Confidence            68999999982 23355543     3367788899999999999997789999999999999965

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.34  E-value=1.2e-11  Score=114.36  Aligned_cols=122  Identities=18%  Similarity=0.240  Sum_probs=85.9

Q ss_pred             EEEeccccceEEEEEEeCC------CCeEEEEEEecccc-----------------------cchHHH----HHHHHHHH
Q 045988           47 QSKLGWGHFSTVWLAWDTQ------TSHYVALKVQKSAQ-----------------------HYTEAA----LDEIKILK   93 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~------~~~~vAiK~~~~~~-----------------------~~~~~~----~~Ei~il~   93 (530)
                      ...||.|-=+.||.|....      .+..+|||+++...                       .....+    .+|.+.|+
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            3578999999999997543      35799999865311                       001122    37999999


Q ss_pred             HhhcCCCCCCcceeEecceeeecCCCCcEEEEEEeccCcC-HHH-HHHhhccCCCCHHHHHHHHHHHHHHHHHH-HhhCC
Q 045988           94 QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGEN-LLT-LIKYADYRGVPLHMVKEICFHILVGLDHL-HRELS  170 (530)
Q Consensus        94 ~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~-L~~-~i~~~~~~~l~~~~~~~i~~qll~aL~~L-H~~~g  170 (530)
                      ++..... .   +.+.+++        ...+|||||++++ +.. .++   ...++...+..++.|++.+|..| |.. |
T Consensus        82 rl~~~Gv-~---vP~pi~~--------~~~~lvME~Ig~~~~~~~~Lk---d~~~~~~~~~~i~~~i~~~l~~l~H~~-g  145 (197)
T cd05146          82 RMQKAGI-P---CPEVVVL--------KKHVLVMSFIGDDQVPAPKLK---DAKLNDEEMKNAYYQVLSMMKQLYKEC-N  145 (197)
T ss_pred             HHHHcCC-C---CCeEEEe--------cCCEEEEEEcCCCCccchhhh---ccccCHHHHHHHHHHHHHHHHHHHHhC-C
Confidence            9976542 2   4444543        2468999999653 321 222   12356667788899999999999 775 9


Q ss_pred             ceeccCCCCcEEEe
Q 045988          171 IIHTDLKPENVLLM  184 (530)
Q Consensus       171 IvHrDIKp~NILl~  184 (530)
                      |||+||++.|||+.
T Consensus       146 lVHGDLs~~NIL~~  159 (197)
T cd05146         146 LVHADLSEYNMLWH  159 (197)
T ss_pred             eecCCCCHHHEEEE
Confidence            99999999999994

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.33  E-value=6.7e-12  Score=114.34  Aligned_cols=114  Identities=23%  Similarity=0.162  Sum_probs=82.4

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV  126 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lV  126 (530)
                      ++.|+.|.++.||+++..  +..|++|+............+|..+++.+....     .+.+++....      ...++|
T Consensus         3 ~~~l~~G~~~~vy~~~~~--~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~-----~~P~~~~~~~------~~~~lv   69 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA--NKKYVVRIPGNGTELLINRENEAENSKLAAEAG-----IGPKLYYFDP------ETGVLI   69 (170)
T ss_pred             eeecCCcccCceEEEEEC--CeEEEEEeCCCCcccccCHHHHHHHHHHHHHhC-----CCCceEEEeC------CCCeEE
Confidence            578899999999999753  788999997765433445678999999996543     1334444322      234799


Q ss_pred             Eecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCc-----eeccCCCCcEEEe
Q 045988          127 FEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSI-----IHTDLKPENVLLM  184 (530)
Q Consensus       127 mE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gI-----vHrDIKp~NILl~  184 (530)
                      |||+ |.++...          ......++.+++.+|+.||+. ++     +|+|++|.|||++
T Consensus        70 ~e~i~G~~l~~~----------~~~~~~~~~~l~~~l~~LH~~-~~~~~~~~HgD~~~~Nil~~  122 (170)
T cd05151          70 TEFIEGSELLTE----------DFSDPENLEKIAKLLKKLHSS-PLPDLVPCHNDLLPGNFLLD  122 (170)
T ss_pred             EEecCCCccccc----------cccCHHHHHHHHHHHHHHhCC-CCCCceeecCCCCcCcEEEE
Confidence            9999 5554432          011234578999999999985 75     9999999999995

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.23  E-value=3.3e-11  Score=115.51  Aligned_cols=84  Identities=21%  Similarity=0.311  Sum_probs=69.4

Q ss_pred             CCcceeEecceeeecCC-CCcEEEEEEecc-CcCHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhh-CCceeccC
Q 045988          102 DKKCVVKLLDHFKHSGP-NGQHVCMVFEYL-GENLLTLIKYADYR--GVPLHMVKEICFHILVGLDHLHRE-LSIIHTDL  176 (530)
Q Consensus       102 ~h~~Iv~~~~~~~~~~~-~~~~~~lVmE~~-~~~L~~~i~~~~~~--~l~~~~~~~i~~qll~aL~~LH~~-~gIvHrDI  176 (530)
                      .|.|||+++.+|.+.-. +...+.++.||+ .+.|..+++.....  .+.....++|+-||+.||.|||+- .-|+|+.+
T Consensus       125 vHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Ppiihgnl  204 (458)
T KOG1266|consen  125 VHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPPIIHGNL  204 (458)
T ss_pred             HHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCccccCCc
Confidence            67779999999987543 456789999999 89999998765433  378889999999999999999972 25999999


Q ss_pred             CCCcEEEee
Q 045988          177 KPENVLLMS  185 (530)
Q Consensus       177 Kp~NILl~~  185 (530)
                      ..+-|++..
T Consensus       205 Tc~tifiq~  213 (458)
T KOG1266|consen  205 TCDTIFIQH  213 (458)
T ss_pred             chhheeecC
Confidence            999999853

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.15  E-value=5.5e-10  Score=99.38  Aligned_cols=127  Identities=17%  Similarity=0.140  Sum_probs=95.6

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEE-ecc--------cccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKS--------AQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~-~~~--------~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .+..|-+|+-+.|+++  ...|+.+.||. +.+        .+....+..+|.++|.++..... .   +.+++  |.  
T Consensus        11 ~l~likQGAEArv~~~--~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI-~---~P~l~--~~--   80 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRG--SFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGI-P---APRLI--FI--   80 (229)
T ss_pred             cceeeeccceeeEeee--ccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC-C---CceEE--EE--
Confidence            6788999999999999  56789989994 221        12334567889999999876542 1   22222  22  


Q ss_pred             CCCCcEEEEEEeccCc--CHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          117 GPNGQHVCMVFEYLGE--NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~--~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                        +...-+|+|||+.+  ++.+++...............++.+|-..|.-||.+ +|||+||..+||+|..
T Consensus        81 --D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~n-diiHGDLTTSNill~~  148 (229)
T KOG3087|consen   81 --DTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDN-DIIHGDLTTSNILLRS  148 (229)
T ss_pred             --ecCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhC-CeecccccccceEEec
Confidence              22446789999966  888888776666555555588999999999999998 9999999999999965

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.00  E-value=4.4e-09  Score=94.18  Aligned_cols=116  Identities=22%  Similarity=0.224  Sum_probs=81.8

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEE-eccc--------ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKV-QKSA--------QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~-~~~~--------~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ..+++|+=+.+|.+..  -|..+++|. +.+.        ....++..+|.+++.++.....    ++..++++..    
T Consensus         2 ~~i~~GAEa~i~~~~~--~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV----~~P~v~dvD~----   71 (204)
T COG3642           2 DLIKQGAEAIIYLTDF--LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGV----PVPIVYDVDP----   71 (204)
T ss_pred             chhhCCcceeEEeeec--cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCeEEEEcC----
Confidence            4578999999999844  344477774 2221        1234566789999999876542    1444455533    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                        ....|+|||+ |..|.+++...         ...++..+-.-+.-||.+ ||||+||.++||++..
T Consensus        72 --~~~~I~me~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~-givHGDLTtsNiIl~~  127 (204)
T COG3642          72 --DNGLIVMEYIEGELLKDALEEA---------RPDLLREVGRLVGKLHKA-GIVHGDLTTSNIILSG  127 (204)
T ss_pred             --CCCEEEEEEeCChhHHHHHHhc---------chHHHHHHHHHHHHHHhc-CeecCCCccceEEEeC
Confidence              5678999999 55666677533         255677788889999997 9999999999999954

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.96  E-value=4e-09  Score=100.23  Aligned_cols=112  Identities=15%  Similarity=0.118  Sum_probs=76.5

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVC  124 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~  124 (530)
                      .+.||.|.++.||++.... |+.|++|+......  ....+.+|..+++.+.+..    ..+.+++.+..... .....+
T Consensus         3 ~~~l~~G~~n~~~~v~~~~-g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~----~~vp~~~~~~~~~~-~~~~~~   76 (223)
T cd05154           3 VRQLSGGQSNLTYLLTAGG-GRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTG----VPVPKVLALCEDPS-VLGTPF   76 (223)
T ss_pred             ceecCCCccceEEEEEecC-CcceEEEeCCCcccCcccccHHHHHHHHHHhhCCC----CCCCCEEEECCCCC-ccCCce
Confidence            3678999999999997643 68899998776543  3567889999999997532    22444555443211 113568


Q ss_pred             EEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 045988          125 MVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR  167 (530)
Q Consensus       125 lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~  167 (530)
                      +||||+ |.++...+..   ..++......++.+++.+|..||+
T Consensus        77 ~v~e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~  117 (223)
T cd05154          77 YVMERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHS  117 (223)
T ss_pred             EEEEEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhC
Confidence            999999 6666554321   236677777778888888888874

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.90  E-value=5.6e-08  Score=99.14  Aligned_cols=125  Identities=14%  Similarity=0.159  Sum_probs=97.7

Q ss_pred             cceEEEEEEeCCCCeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc--
Q 045988           54 HFSTVWLAWDTQTSHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--  130 (530)
Q Consensus        54 ~fg~Vy~a~~~~~~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~--  130 (530)
                      -..+.|+|....+|..|++|.+..... .......-+++++++      .|.|||++.++|....-....+++|++|+  
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl------~h~NvV~frevf~t~tF~D~SlvlvYDYyP~  361 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKL------CHTNVVPFREVFLTYTFGDLSLVLVYDYYPS  361 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHh------ccCceeehhhhhhhhccCcceEEEEEecCCC
Confidence            346889999999999999998854322 122344567888999      77889999999985444567899999999  


Q ss_pred             CcCHHHHHHhh-------------ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          131 GENLLTLIKYA-------------DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       131 ~~~L~~~i~~~-------------~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      ..+|.++.-..             ...+.++..++.|+.||..||.++|+. |+.-+-|.|.+||++.
T Consensus       362 s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss-GLAck~L~~~kIlv~G  428 (655)
T KOG3741|consen  362 SPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS-GLACKTLDLKKILVTG  428 (655)
T ss_pred             CchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc-CceeecccHhHeEeeC
Confidence            45777754211             112477899999999999999999998 9999999999999965

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.90  E-value=5.4e-09  Score=96.27  Aligned_cols=112  Identities=29%  Similarity=0.350  Sum_probs=69.8

Q ss_pred             EEEEEEeCCCCeEEEEEEecccc---------------------------cchHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           57 TVWLAWDTQTSHYVALKVQKSAQ---------------------------HYTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        57 ~Vy~a~~~~~~~~vAiK~~~~~~---------------------------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      .||.|.. .+|..+|||+.+...                           .......+|.++|.++.....    ++.+.
T Consensus         1 ~Vy~~~~-~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv----~vP~p   75 (188)
T PF01163_consen    1 DVYHAID-PDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGV----PVPKP   75 (188)
T ss_dssp             EEEEEEE-CTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-----SS--E
T ss_pred             CEEEEEC-CCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCc----cCCcE
Confidence            4899975 557899999865321                           012345679999999965431    25555


Q ss_pred             cceeeecCCCCcEEEEEEeccC--cCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH-HhhCCceeccCCCCcEEEee
Q 045988          110 LDHFKHSGPNGQHVCMVFEYLG--ENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL-HRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       110 ~~~~~~~~~~~~~~~lVmE~~~--~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~L-H~~~gIvHrDIKp~NILl~~  185 (530)
                      +++-        ..+|||||++  |.....+....   ++......++.+++..+..+ |.. ||||+|+.+.|||+..
T Consensus        76 ~~~~--------~~~ivME~I~~~G~~~~~l~~~~---~~~~~~~~~~~~il~~~~~~~~~~-givHGDLs~~NIlv~~  142 (188)
T PF01163_consen   76 YDYN--------RNVIVMEYIGEDGVPLPRLKDVD---LSPEEPKELLEEILEEIIKMLHKA-GIVHGDLSEYNILVDD  142 (188)
T ss_dssp             EEEE--------TTEEEEE--EETTEEGGCHHHCG---GGGSTHHHHHHHHHHHHHHHHHCT-TEEESS-STTSEEEET
T ss_pred             EEEe--------CCEEEEEecCCCccchhhHHhcc---ccchhHHHHHHHHHHHHHHHHHhc-CceecCCChhhEEeec
Confidence            5442        2479999997  54333333222   22445677888888866664 674 9999999999999954

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.89  E-value=5e-10  Score=117.74  Aligned_cols=124  Identities=17%  Similarity=0.248  Sum_probs=85.1

Q ss_pred             ccceEEecCCcccccccc-------cC-----CCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH-hCCCCCCCCCC
Q 045988          302 DLKCKLVDFGNACWTYKQ-------FT-----NDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA-TGDVLFDPHSG  368 (530)
Q Consensus       302 ~~~vkL~DfG~a~~~~~~-------~~-----~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell-tG~~PF~~~~~  368 (530)
                      .+.+||+.|+++......       ..     -..-...|.|||++.+...+.++|++||||++|.+. .|...|.....
T Consensus       136 ~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~  215 (700)
T KOG2137|consen  136 NGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGG  215 (700)
T ss_pred             CcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhccccccccccceeeeeEEEEEecCCcchhhccCC
Confidence            456889988887543321       11     012355799999999988899999999999999999 66666643321


Q ss_pred             CCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCc
Q 045988          369 DNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDF  448 (530)
Q Consensus       369 ~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~  448 (530)
                      ....       .+..                                     ...-.....++..++.++++=|.++|..
T Consensus       216 ~~~~-------~~~~-------------------------------------~~~~~~~~~~s~~~p~el~~~l~k~l~~  251 (700)
T KOG2137|consen  216 LLSY-------SFSR-------------------------------------NLLNAGAFGYSNNLPSELRESLKKLLNG  251 (700)
T ss_pred             cchh-------hhhh-------------------------------------cccccccccccccCcHHHHHHHHHHhcC
Confidence            1100       0000                                     0000111233456788999999999999


Q ss_pred             CCCCCcCHHHHhcCCCCCCCC
Q 045988          449 VPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       449 dP~~Rpta~elL~hp~f~~~~  469 (530)
                      |+..||++.+++..|||....
T Consensus       252 ~~~~rp~~~~l~~~~ff~D~~  272 (700)
T KOG2137|consen  252 DSAVRPTLDLLLSIPFFSDPG  272 (700)
T ss_pred             CcccCcchhhhhcccccCCch
Confidence            999999999999999998754

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.87  E-value=6.1e-08  Score=94.65  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=79.4

Q ss_pred             CCeEEEEEEecccc------------cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec-CCCCcEEEEEEeccCc
Q 045988           66 TSHYVALKVQKSAQ------------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS-GPNGQHVCMVFEYLGE  132 (530)
Q Consensus        66 ~~~~vAiK~~~~~~------------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~-~~~~~~~~lVmE~~~~  132 (530)
                      .|+.|.||......            .....+.+|.+.+.+|..... ..|.+|-   ++... ++.....+||||++++
T Consensus        44 ~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GI-ptP~pVa---~~e~~~~~~~~~s~LVte~l~~  119 (268)
T PRK15123         44 AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGV-DTMTGVA---FGERGSNPATRTSFIITEDLAP  119 (268)
T ss_pred             CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCC-CCCCeeE---EEEecCCCccceeEEEEeeCCC
Confidence            46678888553221            111247899999999876543 3333333   33221 1123467899999944


Q ss_pred             --CHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          133 --NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       133 --~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                        +|.+++........+......++.++...+.-||.+ ||+|+|+++.|||+..
T Consensus       120 ~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~-Gi~HgDL~~~NiLl~~  173 (268)
T PRK15123        120 TISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAA-GINHRDCYICHFLLHL  173 (268)
T ss_pred             CccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC-cCccCCCChhhEEEec
Confidence              688887543233466778889999999999999997 9999999999999953

>PRK09902 hypothetical protein; Provisional

Probab=98.61  E-value=9.8e-07  Score=81.95  Aligned_cols=128  Identities=9%  Similarity=0.011  Sum_probs=90.3

Q ss_pred             ccccceEEEEEEeCCCCeEEEEEEec----cc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           51 GWGHFSTVWLAWDTQTSHYVALKVQK----SA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        51 G~G~fg~Vy~a~~~~~~~~vAiK~~~----~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      |+||.+.|+....  .|+.|=+|...    .+   +.....+.+|...|.+|.....+    +.+....-....+.....
T Consensus        27 ~rgG~SgV~r~~~--~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvP----VP~pvf~~~~k~~~~~rA  100 (216)
T PRK09902         27 RRNGMSGVQCVER--NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVI----VPKIVFGEAVKIEGEWRA  100 (216)
T ss_pred             CCCCcceEEEEEe--CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCC----CCccceeeeeccCCceEE
Confidence            5577888887642  33356666432    11   33467789999999999876542    333332211222234678


Q ss_pred             EEEEeccC--cCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          124 CMVFEYLG--ENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       124 ~lVmE~~~--~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      +||+|-++  .+|.+++........+......++.++..+|.-||.. |+.|+|+-+.|||++.
T Consensus       101 ~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~-Gv~Hgdly~khIll~~  163 (216)
T PRK09902        101 LLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSV-NRQHGCCYVRHIYVKT  163 (216)
T ss_pred             EEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHC-CCcCCCCCHhheeecC
Confidence            99999886  6888887654444467788889999999999999997 9999999999999953

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.61  E-value=8e-07  Score=83.73  Aligned_cols=97  Identities=21%  Similarity=0.257  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-C-cCHHHHHHhhccCCCCHHHHHHHHHHHH
Q 045988           82 TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-G-ENLLTLIKYADYRGVPLHMVKEICFHIL  159 (530)
Q Consensus        82 ~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~-~~L~~~i~~~~~~~l~~~~~~~i~~qll  159 (530)
                      .....+|.+.+.+|..... .   +.+.+.+...........+||+|++ + .+|.+++.....  .+......++.++.
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi-~---tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~--~~~~~~~~ll~~l~  128 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGI-P---TPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ--LDPSQRRELLRALA  128 (206)
T ss_pred             chHHHHHHHHHHHHHHcCC-C---CCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc--cchhhHHHHHHHHH
Confidence            4567889999988876543 2   3344444443221225679999999 4 378888864333  66778899999999


Q ss_pred             HHHHHHHhhCCceeccCCCCcEEEee
Q 045988          160 VGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       160 ~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      ..++-||.+ ||+|+|+++.|||+..
T Consensus       129 ~~i~~lH~~-gi~H~Dl~~~NILv~~  153 (206)
T PF06293_consen  129 RLIAKLHDA-GIYHGDLNPSNILVDP  153 (206)
T ss_pred             HHHHHHHHC-cCCCCCCCcccEEEeC
Confidence            999999997 9999999999999965

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.54  E-value=3.8e-07  Score=86.68  Aligned_cols=121  Identities=26%  Similarity=0.306  Sum_probs=82.1

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc-----------------------ccchHHHHHHHHHHHHhhcCCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-----------------------QHYTEAALDEIKILKQIAEGDP  100 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-----------------------~~~~~~~~~Ei~il~~l~~~~~  100 (530)
                      +.+..+||-|-=|.||.|.+. .|..+|||+-+..                       ......+.+|.++|.+|.... 
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~-~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G-  170 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDP-KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEG-  170 (304)
T ss_pred             HhhccccccCccceEEEEECC-CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcC-
Confidence            457789999999999999865 6889999963311                       012345678999999985431 


Q ss_pred             CCCcceeEecceeeecCCCCcEEEEEEeccCc-CHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCC
Q 045988          101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPE  179 (530)
Q Consensus       101 ~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~-~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~  179 (530)
                         -.|.+-+++        +..++|||++.| -|..+-       +..+....++..|+.-+..+-. .||||+|+.+-
T Consensus       171 ---~~VP~P~~~--------nRHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~-~GiVHGDlSef  231 (304)
T COG0478         171 ---VKVPKPIAW--------NRHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYR-RGIVHGDLSEF  231 (304)
T ss_pred             ---CCCCCcccc--------ccceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHH-cCccccCCchh
Confidence               114444443        678999999944 433221       2344455555555555555555 49999999999


Q ss_pred             cEEEee
Q 045988          180 NVLLMS  185 (530)
Q Consensus       180 NILl~~  185 (530)
                      |||++.
T Consensus       232 NIlV~~  237 (304)
T COG0478         232 NILVTE  237 (304)
T ss_pred             eEEEec
Confidence            999966

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.53  E-value=9.3e-07  Score=88.25  Aligned_cols=129  Identities=12%  Similarity=0.179  Sum_probs=76.9

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEeccee---eecCCCCcE
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF---KHSGPNGQH  122 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~---~~~~~~~~~  122 (530)
                      ..+.||+|+-+.+|-.-  .-+. .+-|++..-......  .-+..|...     ..||-+-.-+.+=   ...+..+..
T Consensus        15 ~gr~LgqGgea~ly~l~--e~~d-~VAKIYh~Pppa~~a--qk~a~la~~-----p~~p~~~~rvaWPqa~L~G~~~~~~   84 (637)
T COG4248          15 PGRPLGQGGEADLYTLG--EVRD-QVAKIYHAPPPAAQA--QKVAELAAT-----PDAPLLNYRVAWPQATLHGGRRGKV   84 (637)
T ss_pred             CCccccCCccceeeecc--hhhc-hhheeecCCCchHHH--HHHHHhccC-----CCCcchhhhhcccHHHhhCCCccce
Confidence            45679999999999763  2222 344777654322211  112222221     2444332211110   011123344


Q ss_pred             EEEEEeccCc--CHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          123 VCMVFEYLGE--NLLTLIKYA----DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       123 ~~lVmE~~~~--~L~~~i~~~----~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      +.+.|+.+.+  .+..++.-.    ...........+..+.|+.|.+-||.+ |.+-+|+.++|||+++
T Consensus        85 iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~-Gh~vGDVn~~~~lVsd  152 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEH-GHVVGDVNQNSFLVSD  152 (637)
T ss_pred             eEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhc-CCcccccCccceeeec
Confidence            8899999833  333333211    112266788899999999999999997 9999999999999966

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.52  E-value=1.6e-08  Score=105.34  Aligned_cols=259  Identities=15%  Similarity=0.096  Sum_probs=170.9

Q ss_pred             CCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcc
Q 045988           26 RRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKC  105 (530)
Q Consensus        26 ~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~  105 (530)
                      ...+|.|..+-+.  ...|....-+++|+++++++.+...+...+ .+++...    ....-++++|.++      +|||
T Consensus       228 TkS~~qpp~lkDk--~kws~~fh~fvK~altknpKkRptaeklL~-h~fvs~~----l~~rl~~eLLdK~------n~P~  294 (829)
T KOG0576|consen  228 TKSGFQPPTLKDK--TKWSEFFHNFVKGALTKNPKKRPTAEKLLQ-HPFVSQT----LSRRLAIELLDKV------NNPN  294 (829)
T ss_pred             hccCCCCCcccCC--ccchHHHHHHHHHHhcCCCccCCChhhhee-ceeeccc----hhhHHHHHHHHHc------cCCC
Confidence            3456777777774  356778888999999999999877766655 6665554    3344588889998      5666


Q ss_pred             -eeEecceeeecCCCCcEEEEEEeccCcC--HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEE
Q 045988          106 -VVKLLDHFKHSGPNGQHVCMVFEYLGEN--LLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       106 -Iv~~~~~~~~~~~~~~~~~lVmE~~~~~--L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NIL  182 (530)
                       .+..++.+.    .+.+.+++|+++++.  ....+... ...+..-+...+++.-..+|++||+. -=+|||    ||+
T Consensus       295 ~~v~~~~d~~----~E~~~~i~~~i~s~~rs~~~~~~~s-e~~~~~~~~~~~~r~et~~l~~l~~~-~~~~~d----~~l  364 (829)
T KOG0576|consen  295 PVVRYLEDYD----GEDYLWIPMRICSTGRSSALEMTVS-EIALEQYQFAYPLRKETRPLAELHSS-YKVHRD----NIL  364 (829)
T ss_pred             CcccccccCC----cccccchhhhhhcCCccccccCChh-hHhhhhhhhhhhhhhhcccccccccc-cccCcc----ccc
Confidence             555555544    557999999999433  22211100 01133344556666777899999984 558998    887


Q ss_pred             EeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 045988          183 LMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDS  262 (530)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (530)
                      ...                                                                             
T Consensus       365 ~s~-----------------------------------------------------------------------------  367 (829)
T KOG0576|consen  365 GSE-----------------------------------------------------------------------------  367 (829)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            633                                                                             


Q ss_pred             cccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCC
Q 045988          263 VEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKY  340 (530)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~  340 (530)
                                                              ...++.||+........  .+...+|+.++|||+.....+
T Consensus       368 ----------------------------------------~~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~  407 (829)
T KOG0576|consen  368 ----------------------------------------EEVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENTI  407 (829)
T ss_pred             ----------------------------------------cccccccccCCcccCcccccccCCCCCCCCCchhhccccc
Confidence                                                    34677888877654443  566789999999999999999


Q ss_pred             CCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          341 STPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       341 ~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      ....|.|++|+-..++.-|.+|-..-....            ...|..|                          +...+
T Consensus       408 ~~~p~~~~~~~~~~~~ap~~pPr~~P~~~~------------~~~g~~p--------------------------~s~~L  449 (829)
T KOG0576|consen  408 DGCPDSGSLAVSAIQMAPGLPPRSSPPAVL------------PMIGNGP--------------------------NSPML  449 (829)
T ss_pred             ccCCCccCCCcchhhcCCCCCCCCCCcccc------------CCCCCCC--------------------------Ccccc
Confidence            999999999987777877777653100000            0000000                          00000


Q ss_pred             hhhhhhhccCChhcHHHH-HHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          421 NKVLIEKYDFSEKDANDM-ADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~-~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ......        ++.. .++...||..-|..|+...+++.|.+|...+-
T Consensus       450 ~~~~aw--------~~~~~~~~~~~~~~g~P~~pkv~mgacfsKvfngCpl  492 (829)
T KOG0576|consen  450 TDKSAW--------SPVFHRDFPAPCLNGLPPTPKVHMGACFSKVFNGCPL  492 (829)
T ss_pred             chhhhc--------CcccccCCcccccCCCCCCCcchhhHHHHHHhccCcc
Confidence            000000        0111 15888999999999999999999999987764

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.50  E-value=1.4e-06  Score=82.11  Aligned_cols=123  Identities=21%  Similarity=0.302  Sum_probs=82.5

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEecccccc--------------------hH-----HHHHHHHHHHHhhcCCC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY--------------------TE-----AALDEIKILKQIAEGDP  100 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~--------------------~~-----~~~~Ei~il~~l~~~~~  100 (530)
                      +...|..|--+.||+|.. .++..||+|+++.....                    ..     -..+|..-|+++.....
T Consensus        52 ~~g~istGKEA~Vy~a~~-~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGV  130 (268)
T COG1718          52 LVGCISTGKEANVYLAET-GDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGV  130 (268)
T ss_pred             eEeeecCCcceEEEeecc-CCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            345777888899999964 56899999997743211                    11     12458888888865431


Q ss_pred             CCCcceeEecceeeecCCCCcEEEEEEeccCcCHH--HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLL--TLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       101 ~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~--~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                          .+.+-+.+        ....|||||+|....  -.+   ..-++...++..+..+++..+.-|-...++||+||..
T Consensus       131 ----rvP~Pi~~--------~~nVLvMEfIg~~g~pAP~L---kDv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSE  195 (268)
T COG1718         131 ----RVPEPIAF--------RNNVLVMEFIGDDGLPAPRL---KDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSE  195 (268)
T ss_pred             ----CCCCceee--------cCCeEEEEeccCCCCCCCCc---ccCCcCchhHHHHHHHHHHHHHHHHHhcCcccccchh
Confidence                13333333        246899999965511  011   1112344468888889999999888756999999999


Q ss_pred             CcEEEe
Q 045988          179 ENVLLM  184 (530)
Q Consensus       179 ~NILl~  184 (530)
                      =|||+.
T Consensus       196 yNiL~~  201 (268)
T COG1718         196 YNILVH  201 (268)
T ss_pred             hheEEE
Confidence            999995

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.40  E-value=2.1e-06  Score=80.09  Aligned_cols=136  Identities=15%  Similarity=0.182  Sum_probs=85.1

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchH----------HHHHHHHHHHHhhcCCCCCC
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE----------AALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~----------~~~~Ei~il~~l~~~~~~~h  103 (530)
                      .+++.+..++|.+.+++-......|.+.  .-+|+.+++|..+......+          ...+++..+.++....   .
T Consensus        23 ~l~~~i~~~~~~~~kv~k~~~r~~ValI--ei~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g---~   97 (229)
T PF06176_consen   23 ELGEKILDNNYKIIKVFKNTKRNYVALI--EIDGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEG---F   97 (229)
T ss_pred             HHHHHHHhCCceEEEeecCCCccEEEEE--EECCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcC---c
Confidence            4666777899999999999888888777  45678999998665432111          2234444444443221   1


Q ss_pred             cceeEecceeeecC-CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcE
Q 045988          104 KCVVKLLDHFKHSG-PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENV  181 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~-~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NI  181 (530)
                      ..+..++-+..-.. .-....+|||||+ |..|.++..      +++    .+...|..++.-||.. |++|+|..|.|+
T Consensus        98 ~~~~~~yl~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~------i~e----~~~~ki~~~ikqlH~~-G~~HGD~hpgNF  166 (229)
T PF06176_consen   98 TEPADPYLAAEKKIFRYTSSYVLLMEYIEGVELNDIED------IDE----DLAEKIVEAIKQLHKH-GFYHGDPHPGNF  166 (229)
T ss_pred             cccccceeeeeeeeccceeEEEEEEEEecCeecccchh------cCH----HHHHHHHHHHHHHHHc-CCccCCCCcCcE
Confidence            11222111111110 0114567899999 666655432      333    2445677789999996 999999999999


Q ss_pred             EEee
Q 045988          182 LLMS  185 (530)
Q Consensus       182 Ll~~  185 (530)
                      +++.
T Consensus       167 lv~~  170 (229)
T PF06176_consen  167 LVSN  170 (229)
T ss_pred             EEEC
Confidence            9954

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.22  E-value=6.2e-06  Score=87.33  Aligned_cols=128  Identities=18%  Similarity=0.244  Sum_probs=75.5

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccc-----------------------c------------chH------HHH
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-----------------------H------------YTE------AAL   86 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-----------------------~------------~~~------~~~   86 (530)
                      ..|+.++-|+||+|+.+. |+.||||+.+..-                       .            ..+      .+.
T Consensus       131 ~PiAsASIaQVH~A~L~s-G~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~  209 (517)
T COG0661         131 EPIASASIAQVHRAVLKS-GEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYR  209 (517)
T ss_pred             CchhhhhHhhheeEEecC-CCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHH
Confidence            789999999999998654 9999999965310                       0            001      123


Q ss_pred             HHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Q 045988           87 DEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL  165 (530)
Q Consensus        87 ~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~L  165 (530)
                      +|...+.+++..-. +.+. +++-.+|++-   ...-.|+|||+ |-.+.++..... .+++...+.....++..  .-+
T Consensus       210 ~EA~n~~~~~~nf~-~~~~-v~VP~V~we~---t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~~~~~f~--~q~  281 (517)
T COG0661         210 REAANAERFRENFK-DDPD-VYVPKVYWEY---TTRRVLTMEWIDGIKISDIAALKS-AGIDRKELAELLVRAFL--RQL  281 (517)
T ss_pred             HHHHHHHHHHHHcC-CCCC-eEeceeehhc---cCCcEEEEEeeCCEecccHHHHHh-cCCCHHHHHHHHHHHHH--HHH
Confidence            46666666654321 3333 3344444421   14568999999 666666642222 34553333332222211  111


Q ss_pred             HhhCCceeccCCCCcEEEee
Q 045988          166 HRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       166 H~~~gIvHrDIKp~NILl~~  185 (530)
                      -.. |++|.|..|.||++..
T Consensus       282 ~~d-gffHaDpHpGNi~v~~  300 (517)
T COG0661         282 LRD-GFFHADPHPGNILVRS  300 (517)
T ss_pred             Hhc-CccccCCCccceEEec
Confidence            124 9999999999999965

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.22  E-value=2e-05  Score=75.26  Aligned_cols=72  Identities=13%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVF  127 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVm  127 (530)
                      .+||+|..+.||++    .+..+++|+..... ......+|.++++.+..... .   +.+.+.+..    ......+||
T Consensus         7 ~~i~~G~t~~~y~~----~~~~~VlR~~~~~~-~~~~i~~E~~~l~~l~~~gl-p---vP~~~~~~~----~~~~~glv~   73 (226)
T TIGR02172         7 TQTGEGGNGESYTH----KTGKWMLKLYNPGF-DKETIKREFDASRKVFSLGI-P---TPHPFDLVE----DGGRLGLIY   73 (226)
T ss_pred             eeecCCCCcceeEe----cCCCEEEEeCCCCC-CHHHHHHHHHHHHHHHHcCC-C---CCceEEEEe----cCCeeeeee
Confidence            67899999999984    24467899877643 34567899999999974331 1   344455544    234578899


Q ss_pred             eccCc
Q 045988          128 EYLGE  132 (530)
Q Consensus       128 E~~~~  132 (530)
                      |++.|
T Consensus        74 e~i~G   78 (226)
T TIGR02172        74 ELIVG   78 (226)
T ss_pred             eecCC
Confidence            99944

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.19  E-value=4e-05  Score=73.09  Aligned_cols=82  Identities=21%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV  126 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lV  126 (530)
                      ++.|+.|..+.||++....  ..+++|+.... .....+.+|..+++.|.....    .+.+++...... ......+++
T Consensus         2 i~~l~~G~~n~~~~v~~~~--~~~vlK~~~~~-~~~~~~~~e~~~~~~l~~~~~----pvP~~~~~~~~~-~~~~~~~~~   73 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD--GRYVLKFYRPP-DAAERLRREAAVLRQLAEHGI----PVPRVLAFDTSD-EFNGFPYLL   73 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT--SEEEEEEESSH-HHHHHHHHHHHHHHHHHHTTS----BS--EEEEEEET-EETSEEEEE
T ss_pred             CccCCCCCeeeEEEEEECC--cEEEEEEeCCC-CCHHHHHHHHHHHHHHHhcCC----CCceEEeecccc-cccccceEE
Confidence            5789999999999997655  48999987665 446678899999999976542    244555433221 123458999


Q ss_pred             Eecc-CcCHHH
Q 045988          127 FEYL-GENLLT  136 (530)
Q Consensus       127 mE~~-~~~L~~  136 (530)
                      |+++ |..+..
T Consensus        74 ~~~i~g~~~~~   84 (239)
T PF01636_consen   74 MEYIPGRPLDD   84 (239)
T ss_dssp             EEEESSEEHHH
T ss_pred             EEEeccccccc
Confidence            9999 655555

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=98.16  E-value=3.8e-05  Score=70.90  Aligned_cols=121  Identities=19%  Similarity=0.214  Sum_probs=86.4

Q ss_pred             CCEEEEEEeccccc-eEEEEEEeCCCCeEEEEEEeccc------------c----------cchHHHHHHHHHHHHhhcC
Q 045988           42 GRYVVQSKLGWGHF-STVWLAWDTQTSHYVALKVQKSA------------Q----------HYTEAALDEIKILKQIAEG   98 (530)
Q Consensus        42 ~~y~i~~~LG~G~f-g~Vy~a~~~~~~~~vAiK~~~~~------------~----------~~~~~~~~Ei~il~~l~~~   98 (530)
                      ..++.++.||.|+- |.||++.  -.|+.||||+++.-            .          ....-+..|.++..+|...
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~--I~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~  114 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVE--IDGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEA  114 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEE--ECCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhc
Confidence            68999999999999 9999995  56889999993310            0          1223467899999998765


Q ss_pred             CCCCCcce--eEecceeeecC--------------CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 045988           99 DPDDKKCV--VKLLDHFKHSG--------------PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL  162 (530)
Q Consensus        99 ~~~~h~~I--v~~~~~~~~~~--------------~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL  162 (530)
                      +   +.++  |++++++.-..              .......||.||....-          .++...    +.+|+.-|
T Consensus       115 ~---~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~----------~~~~~~----~~~~~~dl  177 (207)
T PF13095_consen  115 G---REGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP----------PLQIRD----IPQMLRDL  177 (207)
T ss_pred             c---ccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc----------ccchhH----HHHHHHHH
Confidence            3   3345  89999885431              12234678999874332          133333    45567778


Q ss_pred             HHHHhhCCceeccCCCCcEE
Q 045988          163 DHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       163 ~~LH~~~gIvHrDIKp~NIL  182 (530)
                      ..+|.. ||+-+|+|+.|..
T Consensus       178 ~~~~k~-gI~~~Dv~~~ny~  196 (207)
T PF13095_consen  178 KILHKL-GIVPRDVKPRNYR  196 (207)
T ss_pred             HHHHHC-CeeeccCcccccc
Confidence            899985 9999999999963

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.11  E-value=1.3e-05  Score=84.66  Aligned_cols=129  Identities=19%  Similarity=0.205  Sum_probs=73.2

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccc--------------------------------cchH------HHHHH
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--------------------------------HYTE------AALDE   88 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--------------------------------~~~~------~~~~E   88 (530)
                      -+.||.-+.|+||+|+.+. |+.||+|+.+..-                                ...+      .+.+|
T Consensus       166 ~~piaaASlaQVhrA~L~~-G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~E  244 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLKN-GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKE  244 (538)
T ss_pred             cchhhhcchhheEEEEecC-CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHH
Confidence            4679999999999999765 9999999865310                                0011      12334


Q ss_pred             HHHHHHhhcCCCCCCcc---eeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q 045988           89 IKILKQIAEGDPDDKKC---VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDH  164 (530)
Q Consensus        89 i~il~~l~~~~~~~h~~---Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~  164 (530)
                      .+-..+.+..-  .|-.   =|.+-.+|++.   ...-.|+|||| |..+.++- .....+++...+..-+.+...-.-+
T Consensus       245 A~Nae~~~~~f--~~~~~~~~V~VP~Vy~~~---st~RVLtME~~~G~~i~Dl~-~i~~~gi~~~~i~~~l~~~~~~qIf  318 (538)
T KOG1235|consen  245 AKNAERFRENF--KDFSLLTYVLVPKVYWDL---STKRVLTMEYVDGIKINDLD-AIDKRGISPHDILNKLVEAYLEQIF  318 (538)
T ss_pred             HHhHHHHHHHH--HhcccccceeCCeehhhc---CcceEEEEEecCCccCCCHH-HHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            44333332211  2222   12233333321   14578999999 65444432 1233446666444433332221112


Q ss_pred             HHhhCCceeccCCCCcEEEee
Q 045988          165 LHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       165 LH~~~gIvHrDIKp~NILl~~  185 (530)
                        .. |++|.|=.|.||+++.
T Consensus       319 --~~-GffHaDPHPGNilv~~  336 (538)
T KOG1235|consen  319 --KT-GFFHADPHPGNILVRP  336 (538)
T ss_pred             --hc-CCccCCCCCCcEEEec
Confidence              23 9999999999999965

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.95  E-value=3.3e-05  Score=69.08  Aligned_cols=113  Identities=27%  Similarity=0.227  Sum_probs=73.4

Q ss_pred             EEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEE
Q 045988           45 VVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVC  124 (530)
Q Consensus        45 ~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~  124 (530)
                      .+.+.||+|.+|.||+|.  ..|..+|+|+-.... ....+..|.++|..+....  .   -.++|.+        ...+
T Consensus        25 ~v~~~L~KG~~s~Vyl~~--~~~~~~a~Kvrr~ds-~r~~l~kEakiLeil~g~~--~---~p~vy~y--------g~~~   88 (201)
T COG2112          25 RVEKELAKGTTSVVYLGE--WRGGEVALKVRRRDS-PRRNLEKEAKILEILAGEG--V---TPEVYFY--------GEDF   88 (201)
T ss_pred             hhhhhhhcccccEEEEee--ccCceEEEEEecCCc-chhhHHHHHHHHHHhhhcC--C---CceEEEe--------chhh
Confidence            456889999999999995  456789999866554 4778889999999987544  1   2233433        2345


Q ss_pred             EEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCC-CCcEEE
Q 045988          125 MVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLK-PENVLL  183 (530)
Q Consensus       125 lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIK-p~NILl  183 (530)
                      +.|||+ |..|.+....     ....    -+..++.+---|-. +||-|+.|. |..++|
T Consensus        89 i~me~i~G~~L~~~~~~-----~~rk----~l~~vlE~a~~LD~-~GI~H~El~~~~k~vl  139 (201)
T COG2112          89 IRMEYIDGRPLGKLEIG-----GDRK----HLLRVLEKAYKLDR-LGIEHGELSRPWKNVL  139 (201)
T ss_pred             hhhhhhcCcchhhhhhc-----ccHH----HHHHHHHHHHHHHH-hccchhhhcCCceeEE
Confidence            669999 6577765431     1222    23344455333344 699999885 444444

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=0.00015  Score=81.43  Aligned_cols=106  Identities=23%  Similarity=0.304  Sum_probs=69.8

Q ss_pred             cCCcccccccc--cCCCCCCCCccCChhhcCCCCCCc--chhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHH
Q 045988          309 DFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTP--ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMEL  384 (530)
Q Consensus       309 DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~--~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~  384 (530)
                      ||+.+......  ......+..+.++|......+..+  .|+|.+|..+..+..|..+-.-            .+.+..+
T Consensus       334 ~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~~------------~~~~~~~  401 (1351)
T KOG1035|consen  334 DFDSSKPLPDNEKSFSDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDISEK------------SAVPVSL  401 (1351)
T ss_pred             hhcccccCCCcccchhhcCccccccccccccccchhhhhhHHHHHHHHHhhhhhcCccccc------------ccchhhh
Confidence            77766543222  122234667888888877666554  6999999999999888654310            0000000


Q ss_pred             hCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCC
Q 045988          385 LGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW  464 (530)
Q Consensus       385 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~  464 (530)
                      +                                             +........+++.+|+.-++++|+++.++|.|||
T Consensus       402 l---------------------------------------------~~~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~~f  436 (1351)
T KOG1035|consen  402 L---------------------------------------------DVLSTSELLDALPKCLDEDSEERLSALELLTHPF  436 (1351)
T ss_pred             h---------------------------------------------ccccchhhhhhhhhhcchhhhhccchhhhhhchh
Confidence            0                                             0011125678999999999999999999999999


Q ss_pred             CCCCCCC
Q 045988          465 INVGPRL  471 (530)
Q Consensus       465 f~~~~~~  471 (530)
                      .+.....
T Consensus       437 ~~~~~~~  443 (1351)
T KOG1035|consen  437 LRFPTDN  443 (1351)
T ss_pred             ccccccc
Confidence            9876543

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.84  E-value=0.00019  Score=69.38  Aligned_cols=75  Identities=17%  Similarity=0.096  Sum_probs=50.3

Q ss_pred             EEeccccc-eEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEE
Q 045988           48 SKLGWGHF-STVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV  126 (530)
Q Consensus        48 ~~LG~G~f-g~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lV  126 (530)
                      ..|-.|.+ +.||++...  +..+.+|+.....  .....+|+++++.+...     --+.+++.+...    ....++|
T Consensus         4 ~~~~~g~~~~~v~~~~~~--~~~~~vk~~~~~~--~~~~~~E~~~l~~l~~~-----~~vP~v~~~~~~----~~~~~lv   70 (244)
T cd05150           4 ERVTEGQSGATVYRLDGK--NPGLYLKIAPSGP--TYELEREAERLRWLAGK-----LPVPEVIDYGSD----DGRAWLL   70 (244)
T ss_pred             eecCCCCCcCeEEEEcCC--CCcEEEEecCCCc--ccchHHHHHHHHHHHhc-----CCCCeEEEEEec----CCccEEE
Confidence            34556666 789999643  4678889876543  34567899999999743     225566665542    2467899


Q ss_pred             Eecc-CcCHH
Q 045988          127 FEYL-GENLL  135 (530)
Q Consensus       127 mE~~-~~~L~  135 (530)
                      ||++ |..|.
T Consensus        71 ~e~i~G~~l~   80 (244)
T cd05150          71 TSAVPGVPAA   80 (244)
T ss_pred             EEeeCCccHh
Confidence            9999 55554

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.81  E-value=0.00035  Score=65.01  Aligned_cols=124  Identities=15%  Similarity=0.187  Sum_probs=86.9

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccc-----------------cchHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-----------------HYTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-----------------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      ...||+|+.-.||.-   ......+||+.....                 .......+|+.-...+.......+.+|.++
T Consensus         6 ~~~i~~G~~R~cy~H---P~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    6 SDLIAQGGERDCYQH---PDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             CcccccCCCceEEEC---CCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            357899999999975   344557889877654                 234567788888888772233367889999


Q ss_pred             cceeeecCCCCcEEEEEEecc-C------cCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEE
Q 045988          110 LDHFKHSGPNGQHVCMVFEYL-G------ENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       110 ~~~~~~~~~~~~~~~lVmE~~-~------~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NIL  182 (530)
                      +++.+    +..-..+|+|.+ +      .+|.+++.   ...++. .....   |-.-..||-.+ +|+.+|++|.||+
T Consensus        83 ~G~ve----T~~G~Glv~e~I~d~dG~~s~TL~~~l~---~~~~~~-~~~~~---L~~f~~~l~~~-~Iv~~dl~~~NIv  150 (199)
T PF10707_consen   83 YGFVE----TNLGLGLVVELIRDADGNISPTLEDYLK---EGGLTE-ELRQA---LDEFKRYLLDH-HIVIRDLNPHNIV  150 (199)
T ss_pred             eEEEe----cCCceEEEEEEEECCCCCcCccHHHHHH---cCCccH-HHHHH---HHHHHHHHHHc-CCeecCCCcccEE
Confidence            99998    445678888887 2      25666663   333555 33333   33445677776 9999999999999


Q ss_pred             Eee
Q 045988          183 LMS  185 (530)
Q Consensus       183 l~~  185 (530)
                      +..
T Consensus       151 ~~~  153 (199)
T PF10707_consen  151 VQR  153 (199)
T ss_pred             EEe
Confidence            966

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PLN02876 acyl-CoA dehydrogenase

Probab=97.74  E-value=0.00035  Score=79.57  Aligned_cols=82  Identities=17%  Similarity=0.193  Sum_probs=53.1

Q ss_pred             EEEEeccccceEEEEEEeCCCC--eEEEEEEecccc--cchHHHHHHHHHHHHhh-cCCCCCCcceeEecceeeecCCCC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTS--HYVALKVQKSAQ--HYTEAALDEIKILKQIA-EGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~--~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~-~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      -+++|+.|.+..+|+......+  ..+++|+.....  .....+.+|.++|+.|. +..    ..+.+++.++.+.. ..
T Consensus        42 ~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~----vpVP~v~~~~~d~~-v~  116 (822)
T PLN02876         42 KVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTD----VPVPKVYCLCTDAS-VI  116 (822)
T ss_pred             eEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCC----CCCCcEEEEecCCC-cC
Confidence            3688899999999998754432  467777654322  22356789999999996 222    12455555554321 12


Q ss_pred             cEEEEEEeccCc
Q 045988          121 QHVCMVFEYLGE  132 (530)
Q Consensus       121 ~~~~lVmE~~~~  132 (530)
                      ...|+||||+.|
T Consensus       117 G~~flVME~v~G  128 (822)
T PLN02876        117 GTAFYIMEYLEG  128 (822)
T ss_pred             CCceEEEEecCC
Confidence            357899999944

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=97.74  E-value=0.0002  Score=71.20  Aligned_cols=124  Identities=18%  Similarity=0.246  Sum_probs=85.3

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEecccc----------------------cchHH-----HHHHHHHHHHhhcC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----------------------HYTEA-----ALDEIKILKQIAEG   98 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----------------------~~~~~-----~~~Ei~il~~l~~~   98 (530)
                      |-..|..|--+.||.|. ..+|..+||||++.+-                      .+...     +..|++-|++|...
T Consensus       148 inGCiSTGKEANVYHat-~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~a  226 (520)
T KOG2270|consen  148 INGCISTGKEANVYHAT-EEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNA  226 (520)
T ss_pred             cccccccCccceeEeee-cCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            45667788889999997 4567779999877321                      11111     24588889999655


Q ss_pred             CCCCCcceeEecceeeecCCCCcEEEEEEeccCcCHHH--HHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccC
Q 045988           99 DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLT--LIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDL  176 (530)
Q Consensus        99 ~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~--~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDI  176 (530)
                      .. ..|     -.+..      ...+|||+|+|.+=.-  .+   ..-.++...+..+..|++.-+.-|-+.+++||.||
T Consensus       227 GI-P~P-----ePIlL------k~hVLVM~FlGrdgw~aPkL---Kd~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADL  291 (520)
T KOG2270|consen  227 GI-PCP-----EPILL------KNHVLVMEFLGRDGWAAPKL---KDASLSTSKARELYQQCVRIMRRLYQKCRLVHADL  291 (520)
T ss_pred             CC-CCC-----Cceee------ecceEeeeeccCCCCcCccc---ccccCChHHHHHHHHHHHHHHHHHHHHhceeccch
Confidence            42 111     11111      3468999999644111  22   22337788899999999998988888899999999


Q ss_pred             CCCcEEEee
Q 045988          177 KPENVLLMS  185 (530)
Q Consensus       177 Kp~NILl~~  185 (530)
                      .--|+|+..
T Consensus       292 SEfN~Lyhd  300 (520)
T KOG2270|consen  292 SEFNLLYHD  300 (520)
T ss_pred             hhhhheEEC
Confidence            999999943

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.74  E-value=0.00024  Score=68.36  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=46.1

Q ss_pred             EEEeccccce-EEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           47 QSKLGWGHFS-TVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        47 ~~~LG~G~fg-~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ++.|+.|+.. .||+..     ..+++|+.... .....+.+|.++|..|........|-   ++......+ .....++
T Consensus         2 ~~~~~~gG~~n~vy~~~-----~~~VlR~~~~~-~~~~~~~~E~~~l~~L~~~~~v~vP~---~~~~~~~~~-~~~~~~~   71 (235)
T cd05155           2 IEPVDSGGTDNATFRLG-----DDMSVRLPSAA-GYAGQVRKEQRWLPRLAPHLPLPVPE---PLGKGEPGE-GYPWPWS   71 (235)
T ss_pred             ceeccCCCcccceEEcC-----CceEEEcCCcc-chHHHHHHHHHHHHHHhccCCCCCCc---eeecCCCcc-CCCcceE
Confidence            4578877776 599862     34778876653 23457889999999986421112333   333222110 1134588


Q ss_pred             EEecc-CcCH
Q 045988          126 VFEYL-GENL  134 (530)
Q Consensus       126 VmE~~-~~~L  134 (530)
                      ||+++ |.++
T Consensus        72 l~~~i~G~~l   81 (235)
T cd05155          72 VYRWLEGETA   81 (235)
T ss_pred             EEEeecCCCC
Confidence            99998 5444

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.50  E-value=0.0013  Score=63.14  Aligned_cols=74  Identities=15%  Similarity=0.234  Sum_probs=48.5

Q ss_pred             EEEeccccceEEEEEEeCC-CCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQ-TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~-~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ++.|..|-...||++.... .++.|++|+............+|+.+++.+.....     +.+++..+.        -.+
T Consensus         3 i~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~~~~d~~~E~~~~~~l~~~gl-----~P~v~~~~~--------~~~   69 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTELIIDRERELRIHKLLSKHGL-----APKLYATFQ--------NGL   69 (235)
T ss_pred             EEEcCCcccceEEEEEcCCCCCCeEEEEEccCCccceecHHHHHHHHHHHHhCCC-----CCeEEEEeC--------CcE
Confidence            5678888889999996443 35788899876543333344579999999865431     334443322        137


Q ss_pred             EEecc-CcC
Q 045988          126 VFEYL-GEN  133 (530)
Q Consensus       126 VmE~~-~~~  133 (530)
                      ||||+ |.+
T Consensus        70 l~e~i~G~~   78 (235)
T cd05157          70 IYEFIPGRT   78 (235)
T ss_pred             EEEeeCCCc
Confidence            99999 544

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=97.30  E-value=0.00063  Score=70.38  Aligned_cols=91  Identities=16%  Similarity=0.172  Sum_probs=60.0

Q ss_pred             CcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCch
Q 045988          342 TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       342 ~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      +++||||+|.++.++.-|...|....      ...++..+... +..+....                            
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~------~s~~l~~i~k~-~~~d~~~~----------------------------  154 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELT------ESEYLEILLKY-YTDDQELL----------------------------  154 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHh-ccCchhHH----------------------------
Confidence            49999999999999999988875322      23333333322 22221110                            


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ....+. .+-......+.+++.+|+-..|..||...++++|+-|.+.
T Consensus       155 ~~a~e~-~~~~~~d~~~~~~~~~c~~~~~~ir~l~~~~~k~~i~~ev  200 (725)
T KOG1093|consen  155 STAMEH-LIQLLADKKRLPLLKKCLWLEPIIRPLPMELSKRCSFTEV  200 (725)
T ss_pred             HHHHHH-HHHHhhhHhHHHHhccCCccccccccchhHHhcCccHHHH
Confidence            000011 1222345667899999999999999999999999999865

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.26  E-value=0.0041  Score=64.22  Aligned_cols=76  Identities=24%  Similarity=0.173  Sum_probs=53.6

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEeccc--------ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--------QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--------~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .+.||.|.+..||++.....++.|+||.-...        ....++...|.++|+.+....+   .++.+++.+-.    
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p---~~VPkV~~~D~----  103 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVP---DLVPKVYHYDE----  103 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCC---CCCCeEEEECC----
Confidence            57899999999999998654468999973311        2245677889999998864321   23666666522    


Q ss_pred             CCcEEEEEEeccC
Q 045988          119 NGQHVCMVFEYLG  131 (530)
Q Consensus       119 ~~~~~~lVmE~~~  131 (530)
                        ...++|||++.
T Consensus       104 --~~~~lVME~L~  114 (401)
T PRK09550        104 --ELAVTVMEDLS  114 (401)
T ss_pred             --CCCEEEEecCC
Confidence              55789999993

>PRK05231 homoserine kinase; Provisional

Probab=97.22  E-value=0.0028  Score=63.92  Aligned_cols=79  Identities=10%  Similarity=0.005  Sum_probs=46.8

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecc-eeeecCCCCcEEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD-HFKHSGPNGQHVCM  125 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~-~~~~~~~~~~~~~l  125 (530)
                      .+.|+.|....+|++... +| .+++|++..  .....+..|+.++..|..... ..|.++.-.+ .....  .....++
T Consensus        27 ~~~l~~G~~n~~y~v~t~-~g-~~vLK~~~~--~~~~~l~~~~~~l~~L~~~gl-pvP~~i~~~~G~~~~~--~~g~~~~   99 (319)
T PRK05231         27 LKGIAEGIENSNFFLTTT-QG-EYVLTLFER--LTAEDLPFFLGLMQHLAARGV-PVPAPVARRDGAALGE--LAGKPAA   99 (319)
T ss_pred             cchhccccccceEEEEeC-CC-cEEEEEecc--CChHHhHHHHHHHHHHHHCCC-CCCcceeCCCCCEeee--eCCEEEE
Confidence            456778888899998632 33 688998762  224555668888888865432 2333433211 01000  1245789


Q ss_pred             EEeccCc
Q 045988          126 VFEYLGE  132 (530)
Q Consensus       126 VmE~~~~  132 (530)
                      +|+|+.|
T Consensus       100 l~~~l~G  106 (319)
T PRK05231        100 IVTFLEG  106 (319)
T ss_pred             EEEecCC
Confidence            9999933

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.22  E-value=0.0018  Score=64.41  Aligned_cols=77  Identities=14%  Similarity=0.082  Sum_probs=48.5

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec--CCCCcEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS--GPNGQHVC  124 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~--~~~~~~~~  124 (530)
                      ++.|..|....+|++..  .+..+++|+...  ........|+.++..|..... .   +.+++......  .......+
T Consensus        19 i~~i~~G~~n~~y~v~~--~~~~~vLr~~~~--~~~~~~~~e~~~l~~L~~~g~-~---vp~~i~~~~g~~~~~~~~~~~   90 (296)
T cd05153          19 FEGISAGIENTNYFVTT--DSGRYVLTLFEK--VSAEELPFFLALLDHLAERGL-P---VPRPIADRDGEYLSELAGKPA   90 (296)
T ss_pred             eecccCccccceEEEEe--CCCcEEEEEcCC--CChHhccHHHHHHHHHHHCCC-C---CCccccCCCCcEeeeeCCceE
Confidence            66788888889999853  344688998765  235567789999999965432 1   33333321000  00124568


Q ss_pred             EEEeccC
Q 045988          125 MVFEYLG  131 (530)
Q Consensus       125 lVmE~~~  131 (530)
                      +||+++.
T Consensus        91 ~l~~~i~   97 (296)
T cd05153          91 ALVEFLA   97 (296)
T ss_pred             EEEEeCC
Confidence            9999993

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=97.19  E-value=8.1e-05  Score=85.15  Aligned_cols=144  Identities=11%  Similarity=0.020  Sum_probs=109.5

Q ss_pred             CCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhhCC----ceec
Q 045988          102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYR--GVPLHMVKEICFHILVGLDHLHRELS----IIHT  174 (530)
Q Consensus       102 ~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~--~l~~~~~~~i~~qll~aL~~LH~~~g----IvHr  174 (530)
                      .|+++...+.-....  .....+.+++|+ +|++++.|.+.-..  .+...-+.....+.+.+..-+|+.-+    .+|+
T Consensus      1287 ~h~~~~~~p~rI~ps--~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~ 1364 (2724)
T KOG1826|consen 1287 KHYLTEVDPLRIPPS--ESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSK 1364 (2724)
T ss_pred             hceeeecccccCCCC--CChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhh
Confidence            566677666655543  456789999999 99999988654322  24445555555666888888876423    6899


Q ss_pred             cCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCC
Q 045988          175 DLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSV  254 (530)
Q Consensus       175 DIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (530)
                      ++|+-|.+|..                                                                     
T Consensus      1365 ~Lkf~lpmIVt--------------------------------------------------------------------- 1375 (2724)
T KOG1826|consen 1365 SLKFTLPMIVT--------------------------------------------------------------------- 1375 (2724)
T ss_pred             hhhhhccceec---------------------------------------------------------------------
Confidence            99999999855                                                                     


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccC
Q 045988          255 DAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRC  331 (530)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~a  331 (530)
                                                                     +..++++++|+.+....   .....++++.|++
T Consensus      1376 -----------------------------------------------ny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~ 1408 (2724)
T KOG1826|consen 1376 -----------------------------------------------NYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVL 1408 (2724)
T ss_pred             -----------------------------------------------CCcccccccccccccCchHhhhhhhhCCHHHHH
Confidence                                                           56799999999984322   2455678999999


Q ss_pred             ChhhcCCCCCCcchhHHHHHHHHHHHhCCCCC
Q 045988          332 PEVLLGSKYSTPADLWSFACICFELATGDVLF  363 (530)
Q Consensus       332 PE~l~~~~~~~~~DiWSlG~il~elltG~~PF  363 (530)
                      |++...-.++.++|+|..|+.+|.+..|..+|
T Consensus      1409 qli~N~ik~t~rsdilr~s~~ly~rs~~n~~f 1440 (2724)
T KOG1826|consen 1409 QLIKNEIKFTKRSDILRRSLSLYLRSDGNAYF 1440 (2724)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhcccHHH
Confidence            99988878888899999999999999998887

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.04  E-value=0.0007  Score=66.35  Aligned_cols=121  Identities=21%  Similarity=0.302  Sum_probs=81.8

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----------c-------------cchHHHHHHHHHHHHhhcCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----------Q-------------HYTEAALDEIKILKQIAEGD   99 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----------~-------------~~~~~~~~Ei~il~~l~~~~   99 (530)
                      =|.+..+||-|--+.||.+-+ ..|+..++|+-...          .             ...-...+|...|+.|....
T Consensus        93 v~svGnqIGVGKESDIY~v~d-~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~g  171 (465)
T KOG2268|consen   93 VESVGNQIGVGKESDIYVVAD-EEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERG  171 (465)
T ss_pred             hhhhccccccccccceEEEec-CCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            367889999999999999975 45888999963211          0             01223467888888886432


Q ss_pred             CCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       100 ~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                      .+    |.+.+++        ...|+|||++ +-.|..+-.        ...+..+...|+.-+.-|-.+ |+||+|..-
T Consensus       172 fp----VPkpiD~--------~RH~Vvmelv~g~Pl~~v~~--------v~d~~~ly~~lm~~Iv~la~~-GlIHgDFNE  230 (465)
T KOG2268|consen  172 FP----VPKPIDH--------NRHCVVMELVDGYPLRQVRH--------VEDPPTLYDDLMGLIVRLANH-GLIHGDFNE  230 (465)
T ss_pred             CC----CCCcccc--------cceeeHHHhhcccceeeeee--------cCChHHHHHHHHHHHHHHHHc-Cceecccch
Confidence            11    4455544        5689999999 666554321        122344455555556667776 999999999


Q ss_pred             CcEEEee
Q 045988          179 ENVLLMS  185 (530)
Q Consensus       179 ~NILl~~  185 (530)
                      =|||+..
T Consensus       231 FNimv~d  237 (465)
T KOG2268|consen  231 FNIMVKD  237 (465)
T ss_pred             heeEEec
Confidence            9999965

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.04  E-value=0.0063  Score=61.01  Aligned_cols=83  Identities=13%  Similarity=0.018  Sum_probs=48.8

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEE
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHV  123 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~  123 (530)
                      ...++.++.|....+|++.. .+| .+++|+..... .......|++++..|..... ..|-++...+-..... .....
T Consensus        24 ~~~i~~~~~G~~n~~y~v~t-~~~-~~vLK~~~~~~-~~~~i~~e~~~l~~L~~~g~-pvp~~i~t~~g~~~~~-~~g~~   98 (307)
T TIGR00938        24 LLSLKGIAEGVENSNYLLTT-DVG-RYILTLYEKRV-KAEELPFFLALTTHLAARGL-PVPKPVKSRDGRQLST-LAGKP   98 (307)
T ss_pred             ceeccccCCccccceEEEEe-CCC-cEEEEEecCCC-CHHHHHHHHHHHHHHHHCCC-CCCccccCCCCCeehh-cCCeE
Confidence            33467788888889999853 334 57789875532 24456678889988865432 2333333221110000 13467


Q ss_pred             EEEEeccC
Q 045988          124 CMVFEYLG  131 (530)
Q Consensus       124 ~lVmE~~~  131 (530)
                      ++||+|+.
T Consensus        99 ~~l~e~i~  106 (307)
T TIGR00938        99 ACLVEFLQ  106 (307)
T ss_pred             EEEEEeCC
Confidence            89999983

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=96.95  E-value=0.0029  Score=61.61  Aligned_cols=70  Identities=16%  Similarity=0.111  Sum_probs=44.1

Q ss_pred             EeccccceEEEEEEeCCCCeEEEEEEecccccch-HHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEE
Q 045988           49 KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYT-EAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVF  127 (530)
Q Consensus        49 ~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~-~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVm  127 (530)
                      .+..|-...+|+..  .++..+++|+........ ....+|..+++.+.....  .|.++   ....        -++||
T Consensus         3 ~~~~G~tn~~y~~~--~~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~--~P~~i---~~~~--------~~~v~   67 (256)
T TIGR02721         3 TLSGGLTNRSWRIE--HPGISFVWRPQSPVCKALGVDRQREYQILQALSALGL--APKPI---LVNE--------HWLLV   67 (256)
T ss_pred             cCCCcCcCCeEEEE--eCCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCC--CCceE---EEeC--------CEEEE
Confidence            35567778899886  456778899865443221 245789999999975431  23333   2211        26899


Q ss_pred             ecc-CcC
Q 045988          128 EYL-GEN  133 (530)
Q Consensus       128 E~~-~~~  133 (530)
                      ||+ |..
T Consensus        68 e~i~G~~   74 (256)
T TIGR02721        68 EWLEGEV   74 (256)
T ss_pred             EeccCcc
Confidence            999 433

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=96.93  E-value=0.0082  Score=59.95  Aligned_cols=53  Identities=17%  Similarity=0.168  Sum_probs=38.4

Q ss_pred             EEEeccccceEEEEEEeCC------CCeEEEEEEecccccchHHHHHHHHHHHHhhcCC
Q 045988           47 QSKLGWGHFSTVWLAWDTQ------TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGD   99 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~------~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~   99 (530)
                      ++.|..|-...||++....      .++.|++|+............+|.+++..+....
T Consensus         3 i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~~~~~r~~E~~~~~~l~~~g   61 (302)
T cd05156           3 VSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSERN   61 (302)
T ss_pred             EEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCCcceechHHHHHHHHHHHhCC
Confidence            4566677777899886433      2578999997765444456778999999997544

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=96.69  E-value=0.0045  Score=57.21  Aligned_cols=85  Identities=21%  Similarity=0.313  Sum_probs=61.1

Q ss_pred             HHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEeccC-cCHHHHHHh-hccCCCCHHHHHHHHHHHHHHHHH
Q 045988           87 DEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLG-ENLLTLIKY-ADYRGVPLHMVKEICFHILVGLDH  164 (530)
Q Consensus        87 ~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~-~~L~~~i~~-~~~~~l~~~~~~~i~~qll~aL~~  164 (530)
                      .|.-+|+.+.+     .++++++++++-        .++|.||.+ +.+...... ......++.....|+.+++..+.+
T Consensus         8 ~E~lll~~l~~-----~~~~pk~lG~CG--------~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~   74 (188)
T PF12260_consen    8 NEPLLLQLLQG-----SEPFPKLLGSCG--------RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEE   74 (188)
T ss_pred             cHHHHHHHcCC-----CCCCCCeeeECC--------CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHH
Confidence            57778888854     236999999975        366889995 444321000 011226788999999999999999


Q ss_pred             HHh---hCCceeccCCCCcEEEee
Q 045988          165 LHR---ELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       165 LH~---~~gIvHrDIKp~NILl~~  185 (530)
                      |+.   . .+.-.|++|+||-++.
T Consensus        75 l~~~~~~-~~~lcDv~~~nfgv~~   97 (188)
T PF12260_consen   75 LDHGPLG-FFYLCDVSPDNFGVND   97 (188)
T ss_pred             HhcCCCC-cEEEeecchHHeEEeC
Confidence            997   3 3777899999999965

Proteins in this uncharacterised family are described as transmembrane proteins.

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.57  E-value=0.027  Score=57.09  Aligned_cols=73  Identities=19%  Similarity=0.211  Sum_probs=49.6

Q ss_pred             EeccccceEEEEEEeCCCCeEEEEEEec----c----cccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           49 KLGWGHFSTVWLAWDTQTSHYVALKVQK----S----AQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        49 ~LG~G~fg~Vy~a~~~~~~~~vAiK~~~----~----~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .||-|.-..||++.+...++-|+||.-.    .    -....++...|..+|+......+   ..+.++|.+      +.
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P---~~vP~vy~~------D~   72 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVP---HLVPRIFHF------DT   72 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCc---cccCeEEEE------cc
Confidence            5799999999999975444789999522    1    13345666789999987754321   135555554      33


Q ss_pred             cEEEEEEecc
Q 045988          121 QHVCMVFEYL  130 (530)
Q Consensus       121 ~~~~lVmE~~  130 (530)
                      ....+|||++
T Consensus        73 e~~~~vMEdL   82 (370)
T TIGR01767        73 EMAVTVMEDL   82 (370)
T ss_pred             ccceehHhhC
Confidence            6678999999

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PRK10593 hypothetical protein; Provisional

Probab=96.44  E-value=0.024  Score=56.51  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=72.4

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      -.+.||.|..+.||+.... ++ .+.+|+.+. ......+..|...|+.|.....   ..+.++++++.... .....+|
T Consensus        18 ~~~~i~~G~~~~vy~~~~~-~~-~~~~k~~~~-~~~~~~~~~Ea~~L~~L~~~~~---vpVP~V~~~~~~~~-~~g~~~L   90 (297)
T PRK10593         18 RVECISEQPYAALWALYDS-QG-NPMPLMARS-FSTPGVAQQEAWKLSMLARSGT---VRMPTVYGVMTHEQ-SPGPDVL   90 (297)
T ss_pred             eeeecCCccceeEEEEEcC-CC-CEEEEEecc-cccchHHHHHHHHHHHHccCCC---CCcCcEEEEeccCC-cCCCeEE
Confidence            4678999999999998532 23 477787543 2234678899999999965321   22555665544321 2356899


Q ss_pred             EEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 045988          126 VFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR  167 (530)
Q Consensus       126 VmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~  167 (530)
                      |||++ +.++.+.       .........+..+++.+|+-||+
T Consensus        91 VmE~i~G~~~~~~-------~~~~~~~~~l~~~l~~~La~LH~  126 (297)
T PRK10593         91 LLERLRGVSVEAP-------ARTPERWEQLKDQIVEGLLAWHR  126 (297)
T ss_pred             EEeccCCEecCCC-------CCCHHHHHHHHHHHHHHHHHHhC
Confidence            99999 5555431       13344566777889999999997

>PRK12396 5-methylribose kinase; Reviewed

Probab=96.08  E-value=0.038  Score=56.74  Aligned_cols=75  Identities=25%  Similarity=0.303  Sum_probs=52.8

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEE----eccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~----~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .+.||-|.-..||++.+...++-|+||.    ++..   ....++...|.++|+.+....+   .++.++|.+      +
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P---~~VP~vy~~------D  104 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAP---GLVPKVYLF------D  104 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCC---CcCCeEEEE------C
Confidence            7889999999999998754456799994    2211   3345677889999998765332   125555555      3


Q ss_pred             CcEEEEEEecc
Q 045988          120 GQHVCMVFEYL  130 (530)
Q Consensus       120 ~~~~~lVmE~~  130 (530)
                      .....+|||++
T Consensus       105 ~e~~~~vMEdL  115 (409)
T PRK12396        105 SVMNCCVMEDL  115 (409)
T ss_pred             cHHhhHHHHhC
Confidence            46778999998

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=96.08  E-value=0.035  Score=54.74  Aligned_cols=45  Identities=18%  Similarity=0.138  Sum_probs=30.2

Q ss_pred             ccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhc
Q 045988           51 GWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAE   97 (530)
Q Consensus        51 G~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~   97 (530)
                      ++|-...||.+. ..+|..+++|+-+... ......+|.++|+.|..
T Consensus        20 ~~g~~~~v~~i~-~~~g~~~VlR~p~~~~-~~~~l~rE~~vL~~L~~   64 (276)
T cd05152          20 ESGLDFQVVFAK-DTDGVPWVLRIPRRPD-VSERAAAEKRVLALVRK   64 (276)
T ss_pred             CCcceeEEEEEE-cCCCCeEEEEecCCHH-HHHHHHHHHHHHHHHHh
Confidence            555555666653 2357788888765432 24567899999999974

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PLN02236 choline kinase

Probab=95.98  E-value=0.049  Score=55.53  Aligned_cols=76  Identities=18%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             EEEEeccccceEEEEEEeCC----CCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           46 VQSKLGWGHFSTVWLAWDTQ----TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~----~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      -+..|-.|-.-.+|++....    .++.|++|+........-...+|..+++.+.....  -|   ++++.+.    ++ 
T Consensus        40 ~i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~idR~~E~~~~~~l~~~gl--~P---~~~~~~~----~g-  109 (344)
T PLN02236         40 QVIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVELFFDRDDEIRTFECMSRHGQ--GP---RLLGRFP----NG-  109 (344)
T ss_pred             EEEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCCeeechHHHHHHHHHHHHcCC--CC---ceEEEEC----Cc-
Confidence            34556558888999986432    34789999887654433344789999999976542  22   3344443    22 


Q ss_pred             EEEEEEecc-CcCH
Q 045988          122 HVCMVFEYL-GENL  134 (530)
Q Consensus       122 ~~~lVmE~~-~~~L  134 (530)
                         .|.+|+ +.+|
T Consensus       110 ---~v~efi~g~~l  120 (344)
T PLN02236        110 ---RVEEFIHARTL  120 (344)
T ss_pred             ---eEEEeeCCCCC
Confidence               478888 4343

>PLN02756 S-methyl-5-thioribose kinase

Probab=95.81  E-value=0.15  Score=52.73  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=50.9

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEec-----ccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQK-----SAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~-----~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ..+.||-|....||++.+.  +..|+||.-.     ...   ....+...|.+.|+.+....+   ..+.+++.+..   
T Consensus        36 ~~~eiggGn~N~VyrV~~~--~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p---~~VPkVy~~de---  107 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSS--SGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCP---DHVPEVYHFDR---  107 (418)
T ss_pred             eEEEcCCCceeeEEEEEcC--CccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCC---CCCCeEEEECC---
Confidence            4788999999999999863  4568899643     111   245566678888877754322   23666666644   


Q ss_pred             CCCcEEEEEEeccCc
Q 045988          118 PNGQHVCMVFEYLGE  132 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~  132 (530)
                         ...++|||++.+
T Consensus       108 ---d~~vlvME~L~~  119 (418)
T PLN02756        108 ---TMALIGMRYLEP  119 (418)
T ss_pred             ---CCCEEEEeecCC
Confidence               457889999933

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=95.73  E-value=0.1  Score=52.88  Aligned_cols=56  Identities=11%  Similarity=0.157  Sum_probs=37.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCC---CeEEEEEEecccccchHHHHHHHHHHHHhhcCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQHYTEAALDEIKILKQIAEGD   99 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~   99 (530)
                      ...+ +.|..|=.-.+|++.....   +..|++|+........-...+|..+++.+....
T Consensus        16 ~i~i-~~l~gGlTN~~~~v~~~~~~~~~~~~v~Ri~g~~t~~~IdR~~E~~il~~l~~~g   74 (330)
T PLN02421         16 DFSV-ERISGGITNLLLKVSVKEENGNEVSVTVRLFGPNTDYVIDRERELQAIKYLSAAG   74 (330)
T ss_pred             ceEE-EEeCCcccceEEEEEecCCCCCCceEEEEEecCCcCeEechHHHHHHHHHHHhcC
Confidence            4444 4444477778898864332   347899987765443444568999999997654

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=95.37  E-value=0.37  Score=48.15  Aligned_cols=67  Identities=13%  Similarity=0.098  Sum_probs=38.0

Q ss_pred             EEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecc-eeeecCCCCcEEEEEEeccC
Q 045988           57 TVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD-HFKHSGPNGQHVCMVFEYLG  131 (530)
Q Consensus        57 ~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~-~~~~~~~~~~~~~lVmE~~~  131 (530)
                      .||++.. . +..+++|++...   ...+..|+.++..|..... .-|-++...+ .....  .+...++|+|++.
T Consensus        11 ~v~~v~t-~-~g~~~LK~~~~~---~~~~~~~~~~~~~L~~~g~-~vp~~i~t~~g~~~~~--~~~~~~~l~~~i~   78 (313)
T TIGR02906        11 NVYKVET-D-SGNKCLKKINYP---PERLLFILGAQEHLRKNGF-NIPKILKTKDGELYVK--YNGDLYVLTEWIE   78 (313)
T ss_pred             cEEEEEe-C-CCCeEEEEcCCC---HHHHHHHHHHHHHHHHcCC-CCCceeecCCCCEEEE--ECCEEEEEehhcc
Confidence            4888863 2 336889987532   3446668888888865432 2233333221 11111  1356899999993

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=95.16  E-value=0.15  Score=50.90  Aligned_cols=80  Identities=11%  Similarity=0.118  Sum_probs=44.4

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEecc---cccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKS---AQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~---~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ..+++.+-.|..-.+|.....  ++.+++. ...   .........+|..+++.+...-.    -+...+..+....  -
T Consensus        27 ~~~v~~~~~G~sn~t~~~~~~--~~~~vlR-~P~~~~~~~~~~~~~re~~~i~~l~~~~v----P~p~~~~~~~~~~--~   97 (321)
T COG3173          27 LLIVEEISGGWSNDTFRLGDT--GQKYVLR-KPPRGDPVESAHDEKREYRVIAALLDVDV----PVPRAFGLCGEGY--L   97 (321)
T ss_pred             CceeeeccCCcccceEEEecC--CceEEEe-cCCccccchhhhHHHhHHHHHHHhcCCCC----CCcccccccccCC--C
Confidence            445556655544555665433  7777777 221   12234566788888888854211    1333444444221  1


Q ss_pred             cEEEEEEeccCc
Q 045988          121 QHVCMVFEYLGE  132 (530)
Q Consensus       121 ~~~~lVmE~~~~  132 (530)
                      ...|.||+|+.|
T Consensus        98 g~pf~v~~~veG  109 (321)
T COG3173          98 GTPFYVMEWVEG  109 (321)
T ss_pred             CCceEEEEEecc
Confidence            467999999944

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=95.04  E-value=0.084  Score=53.77  Aligned_cols=60  Identities=27%  Similarity=0.403  Sum_probs=41.7

Q ss_pred             EEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          123 VCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       123 ~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      ..||=+|. |-.+..+++.   ...++...+.++.-...||.-+----+++|.|+.|.||++..
T Consensus       320 ~vl~E~~~~Gl~v~~~v~~---~~~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf  380 (565)
T KOG1236|consen  320 LVLVETYERGLSVLRFVKW---KSQPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRF  380 (565)
T ss_pred             ceeeeeccccccHHhhhhc---ccChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEe
Confidence            45666677 7788777753   336666677776666666655442128999999999999965

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=94.96  E-value=0.1  Score=52.38  Aligned_cols=60  Identities=17%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                      .+.+.|++|++-|+.|.-. +     ....+++..|+.+.+.-++-+..++.+-|||+..+||||+
T Consensus       297 e~~y~yl~~kdhgt~is~i-k-----~~~~~e~lsff~s~~sil~~lekkf~fehrnlt~~niLId  356 (488)
T COG5072         297 ETLYLYLHFKDHGTPISII-K-----ADRSEEELSFFWSCISILDILEKKFPFEHRNLTLDNILID  356 (488)
T ss_pred             CceEEEEEEecCCceeeee-e-----cccHHHHHHHHHHHHHHHhhhhhcCCcccccccccceeee
Confidence            5578999999998876432 1     1456788899999988888888888899999999999995

>PTZ00384 choline kinase; Provisional

Probab=94.82  E-value=0.35  Score=49.97  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=45.4

Q ss_pred             EEEEeccccceEEEEEEeCCCC------eEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTS------HYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~------~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++.|..|-...+|++......      +.|.+++........-...+|+++++.|....     .-.++++.|.     
T Consensus        54 ~i~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~~~~l~IdR~~E~~i~~~Ls~~g-----lgP~l~~~f~-----  123 (383)
T PTZ00384         54 EIKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTYNSLVIDNDLQYNIAKLLGDNN-----FGPKIIGRFG-----  123 (383)
T ss_pred             EEEEeCCcccceEEEEEecCCCCCccccceEEEEeccCCCceEeccHHHHHHHHHHHhCC-----CCCeEEEecC-----
Confidence            3456666888999999643321      23555554333222334467999999997543     2445566654     


Q ss_pred             CcEEEEEEecc-CcC
Q 045988          120 GQHVCMVFEYL-GEN  133 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~  133 (530)
                         -++|.||+ |..
T Consensus       124 ---~g~l~efIeGr~  135 (383)
T PTZ00384        124 ---DFTIQEWVEGNT  135 (383)
T ss_pred             ---CEEEEEEecccc
Confidence               25888998 443

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=94.77  E-value=0.37  Score=48.62  Aligned_cols=81  Identities=16%  Similarity=0.143  Sum_probs=46.8

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVF  127 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVm  127 (530)
                      ..|.+ .-..||++... +|. +++|+.... ........|+..|..|.......-.-|...-+-....-..+.+.+-|+
T Consensus        32 ~~l~s-~eN~~f~~~~~-~g~-~iLki~~~~-~~~~~i~~el~~l~~La~~~i~v~~Pl~~~dG~~l~~~~~~~r~a~lf  107 (331)
T COG2334          32 RGLNS-EENSNFRVQTE-DGR-YILKIYRPG-WTRAEIPFELALLQHLAERGIPVPAPLPSLDGELLEALSGGPRPAALF  107 (331)
T ss_pred             ccccc-ccCceEEEEec-CCC-eEEEEecCC-CCHHHHHHHHHHHHHHHHcCCCCCCCccCCCcchhhhccCCceeEEEE
Confidence            34444 44568888533 333 499999887 667788889999999975532111112222222111100114788899


Q ss_pred             eccCc
Q 045988          128 EYLGE  132 (530)
Q Consensus       128 E~~~~  132 (530)
                      +|++|
T Consensus       108 ~~l~G  112 (331)
T COG2334         108 EYLPG  112 (331)
T ss_pred             EecCC
Confidence            99944

>PRK11768 serine/threonine protein kinase; Provisional

Probab=94.56  E-value=1.3  Score=44.83  Aligned_cols=69  Identities=20%  Similarity=0.216  Sum_probs=41.7

Q ss_pred             eEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEec---ceeeecCCCCcEEEEEEeccC
Q 045988           56 STVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLL---DHFKHSGPNGQHVCMVFEYLG  131 (530)
Q Consensus        56 g~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~---~~~~~~~~~~~~~~lVmE~~~  131 (530)
                      ..||++.. .++..|++|+..........+..|+.++..|.....   | |+...   +-....  -+...+.|+++++
T Consensus        39 N~vy~v~~-~~~~~~vlKv~r~~~~~~~~i~~E~~~l~~L~~~gi---p-v~~p~~~~G~~~~~--~~g~~~~l~~~~~  110 (325)
T PRK11768         39 NRVYQFGD-EDGRRVVAKFYRPERWSDAQILEEHAFALELAEAEI---P-VVAPLAFNGQTLHE--HQGFRFALFPRRG  110 (325)
T ss_pred             ceEEEEec-CCCCEEEEEEcCcccCCHHHHHHHHHHHHHHHHCCC---C-CCCCccCCCCEEEE--ECCEEEEEEeeeC
Confidence            46888853 456679999987544456677789999998865321   1 22211   111011  1246778999983

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=94.36  E-value=0.093  Score=49.37  Aligned_cols=33  Identities=12%  Similarity=0.112  Sum_probs=26.1

Q ss_pred             CeEEEEEEecccccchHHHHHHHHHHHHhhcCC
Q 045988           67 SHYVALKVQKSAQHYTEAALDEIKILKQIAEGD   99 (530)
Q Consensus        67 ~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~   99 (530)
                      ++.|++|+.............|..+++.+....
T Consensus         2 ~~~~~~Ri~g~~t~~~idr~~E~~~~~~l~~~g   34 (211)
T PF01633_consen    2 PEKYLVRIPGEGTENFIDRENENEALKLLSEAG   34 (211)
T ss_dssp             TSEEEEEEEESCGCSHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEeCCCCcccccCHHHHHHHHHHHHHcC
Confidence            457899998887666677788999999997544

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=93.99  E-value=0.23  Score=49.16  Aligned_cols=75  Identities=17%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             EEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEE
Q 045988           45 VVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVC  124 (530)
Q Consensus        45 ~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~  124 (530)
                      +-.+.|+-|....+|+..  .+++.|-+|+-..  .....+..|..-|+.|.....   -.+.+++.+....    ...+
T Consensus        20 ~~~~~v~GG~i~~a~~~~--~~~~~~FvK~~~~--~~~~~f~~Ea~gL~~L~~~~~---~~vP~vi~~G~~~----~~~f   88 (288)
T PF03881_consen   20 TSIEPVSGGDINEAYRLD--TDGGSYFVKVNSE--SGRDMFEGEAEGLKALAEANP---IRVPKVIAWGEYD----DDAF   88 (288)
T ss_dssp             -EEEEE--SSSSEEEEEE--TTS-EEEEEEEEG--GGCCHHHHHHHHHHHHCHTTT---SBS--EEEEEE-S----SCCE
T ss_pred             eeeEecCCCChhheEEEE--CCCccEEEEecCh--hhHHHHHHHHHHHHHHHhcCC---CCCCeEEEEEeec----CCce
Confidence            346778989999999986  6778899998662  335677889999999965432   2355666665532    3459


Q ss_pred             EEEecc
Q 045988          125 MVFEYL  130 (530)
Q Consensus       125 lVmE~~  130 (530)
                      |||||+
T Consensus        89 Llle~l   94 (288)
T PF03881_consen   89 LLLEFL   94 (288)
T ss_dssp             EEEE--
T ss_pred             EEEEee
Confidence            999998

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PRK06148 hypothetical protein; Provisional

Probab=93.27  E-value=1  Score=52.69  Aligned_cols=85  Identities=14%  Similarity=0.103  Sum_probs=47.5

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCC-CCCCcceeEecce-e--eecCCCC-cE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGD-PDDKKCVVKLLDH-F--KHSGPNG-QH  122 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~-~~~h~~Iv~~~~~-~--~~~~~~~-~~  122 (530)
                      +.|+. ..-.+|++. ..+|..|++|+.+... .......|..+|..|.... ...-|.+++..+- +  .....++ .+
T Consensus        31 ~~L~s-~~d~nf~v~-~~~g~~yVLKi~~~~~-~~~~~~~q~~~L~hL~~~~~glpvP~~i~t~~G~~~~~v~~~~G~~~  107 (1013)
T PRK06148         31 TPLDG-ERDLNFRLT-TDDGADYILKIVNPSE-PRVESDFQTAALDHLAAVAPDLPVPRLIPSLSGASLASAQDPDGEPR  107 (1013)
T ss_pred             eecCC-cCCceEEEE-eCCCCeEEEEEcCCcc-chhHHHHHHHHHHHHHhhCCCCCcCeeeecCCCCeEEEeecCCCceE
Confidence            45643 456778875 3457789999988643 2344556777887776431 1233444443321 1  1111122 36


Q ss_pred             EEEEEecc-CcCHH
Q 045988          123 VCMVFEYL-GENLL  135 (530)
Q Consensus       123 ~~lVmE~~-~~~L~  135 (530)
                      .+-+|+|+ |..+.
T Consensus       108 ~vrLl~~l~G~~l~  121 (1013)
T PRK06148        108 LLRLLSWLPGTPLA  121 (1013)
T ss_pred             EEEEEeccCCCcHH
Confidence            77889999 54443

>PHA03111 Ser/Thr kinase; Provisional

Probab=93.04  E-value=0.072  Score=52.71  Aligned_cols=38  Identities=26%  Similarity=0.446  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh---CCceeccCCCCcEEEee
Q 045988          148 LHMVKEICFHILVGLDHLHRE---LSIIHTDLKPENVLLMS  185 (530)
Q Consensus       148 ~~~~~~i~~qll~aL~~LH~~---~gIvHrDIKp~NILl~~  185 (530)
                      .+-++.++.||+.-.-.+-..   .+++|-||||+|||+.+
T Consensus       278 ~~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFd  318 (444)
T PHA03111        278 VEYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFD  318 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEec
Confidence            456888899987655444211   26999999999999976

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=92.96  E-value=0.43  Score=44.82  Aligned_cols=75  Identities=12%  Similarity=0.257  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 045988           82 TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILV  160 (530)
Q Consensus        82 ~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~  160 (530)
                      ..-+..+.+++.++..        |+++..-      ++..+.+++|+| ..... +             .- ++.-=+.
T Consensus       102 ~~~y~nky~v~ArmhG--------ilrL~ND------n~~~yGvIlE~Cy~~~i~-~-------------~N-~i~agi~  152 (308)
T PF07387_consen  102 DALYFNKYRVFARMHG--------ILRLKND------NNYKYGVILERCYKIKIN-F-------------SN-FITAGIK  152 (308)
T ss_pred             hhhhhhhhhHHHHhhh--------eeEeecC------CCceeEEEEeeccCcccc-h-------------hH-HHHHhHH
Confidence            3445778999988843        7877732      446678999999 32210 0             01 1111146


Q ss_pred             HHHHHH-hhCCceeccCCCCcEEEee
Q 045988          161 GLDHLH-RELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       161 aL~~LH-~~~gIvHrDIKp~NILl~~  185 (530)
                      +|.-.| ++-+.+|+|..|+|||-+.
T Consensus       153 ~L~~fH~~~~~~lHGD~np~NiM~D~  178 (308)
T PF07387_consen  153 DLMDFHSENQHCLHGDCNPDNIMCDK  178 (308)
T ss_pred             HHHHhhccCCCeecCCCChhheeecC
Confidence            778888 4447999999999999865

The function of this family is unknown.

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=92.84  E-value=1  Score=45.15  Aligned_cols=70  Identities=11%  Similarity=0.115  Sum_probs=37.3

Q ss_pred             cceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec--CCCCcEEEEEEeccC
Q 045988           54 HFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS--GPNGQHVCMVFEYLG  131 (530)
Q Consensus        54 ~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~--~~~~~~~~lVmE~~~  131 (530)
                      .-+.||++.-  ++..+++|.+...   .+.+...+.++..|....   -+++++++..-...  ...+...|++|+++.
T Consensus        18 ~~~~v~~v~T--~~G~~~Lk~~~~~---~~~l~~~~~~~~~L~~~G---~~~~~~~~~t~~G~~~~~~~~~~~~L~~wi~   89 (309)
T TIGR02904        18 VTGKLFKVYT--DQGVFALKKLYAD---RNTIESFVSQIQVLSEKG---FSRIVPVYPTKDGSYYLFHGHFLYYLMPWLD   89 (309)
T ss_pred             ccCcEEEEEe--CCCCEEEEEeccc---hHhHHHHHHHHHHHHHcC---CCcCCceeecCCCCeeeEECCEEEEEeCCcc
Confidence            3568999853  3346888987643   334445666666665432   23344442211100  001345689999983

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	530
1wbp_A	397	Srpk1 Bound To 9mer Docking Motif Peptide Length =		2e-62
3beg_A	381	Crystal Structure Of Sr Protein Kinase 1 Complexed		2e-62
2x7g_A	389	Structure Of Human Serine-Arginine-Rich Protein-Spe		1e-60
1q8y_A	373	The Structure Of The Yeast Sr Protein Kinase, Sky1p		6e-48
1how_A	373	The X-Ray Crystal Structure Of Sky1p, An Sr Protein		6e-48
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		4e-20
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		2e-18
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		4e-20
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		3e-18
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		6e-20
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		2e-18
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		7e-19
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		5e-17
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		8e-18
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		2e-13
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		9e-18
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		2e-13
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		9e-18
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		3e-13
2exe_A	357	Crystal Structure Of The Phosphorylated Clk3 Length		4e-17
2exe_A	357	Crystal Structure Of The Phosphorylated Clk3 Length		1e-14
2wu6_A	381	Crystal Structure Of The Human Clk3 In Complex With		4e-17
2wu6_A	381	Crystal Structure Of The Human Clk3 In Complex With		1e-14
2eu9_A	355	Crystal Structure Of Clk3 Length = 355		5e-17
2eu9_A	355	Crystal Structure Of Clk3 Length = 355		1e-14
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		3e-15
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		1e-14
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		4e-15
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		6e-14
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		2e-14
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		2e-14
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-12
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-08
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		4e-12
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-12
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-08
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		5e-12
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		5e-08
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		8e-12
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		8e-09
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		1e-10
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		2e-04
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-10
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		1e-10
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		2e-10
4exu_A	371	Mapk13, Inactive Form Length = 371		3e-10
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		3e-10
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		6e-10
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		7e-10
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		7e-10
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		7e-10
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		8e-10
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		8e-10
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		1e-09
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		1e-09
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		1e-09
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		1e-09
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		1e-09
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		1e-09
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		1e-09
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		1e-09
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		1e-09
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		1e-09
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		1e-09
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		1e-09
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		1e-09
2oza_B	366	Structure Of P38alpha Complex Length = 366		1e-09
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		1e-09
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		1e-09
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		1e-09
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		1e-09
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		1e-09
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		2e-09
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		2e-09
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		2e-09
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		2e-09
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		2e-09
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		2e-09
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		2e-09
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		2e-09
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		2e-09
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		2e-09
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		2e-09
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		2e-09
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		2e-09
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		9e-07
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		2e-09
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		2e-09
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		2e-09
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		2e-09
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		2e-09
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		2e-09
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		2e-09
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		2e-09
3hec_A	348	P38 In Complex With Imatinib Length = 348		2e-09
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		2e-09
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		2e-09
2chl_A	351	Structure Of Casein Kinase 1 Gamma 3 Length = 351		3e-09
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		3e-09
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		4e-09
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		4e-09
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		4e-09
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		4e-09
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		4e-09
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		1e-06
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		5e-09
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		1e-06
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		5e-09
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		1e-06
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		5e-09
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		5e-09
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		6e-09
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		1e-06
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		6e-09
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		6e-09
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		1e-06
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		6e-09
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		7e-09
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		8e-09
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-07
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		8e-09
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		2e-07
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		8e-09
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		8e-09
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		2e-07
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		8e-09
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		2e-07
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		9e-09
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		9e-07
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		9e-09
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		9e-07
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		9e-09
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		9e-07
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		9e-09
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		9e-07
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		1e-08
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		1e-06
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		1e-08
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		1e-08
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		2e-07
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		1e-08
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		9e-07
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		1e-08
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		1e-08
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		2e-07
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		1e-08
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		1e-06
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		1e-08
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		2e-07
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		1e-08
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		1e-06
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		1e-08
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		1e-06
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		1e-08
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		1e-06
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		1e-08
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		3e-07
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		1e-08
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		2e-07
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		1e-08
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		2e-07
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		1e-08
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		2e-07
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		1e-08
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		1e-06
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		1e-08
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		1e-06
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		1e-08
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		1e-06
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		1e-08
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-08
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-06
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		2e-08
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-08
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-06
2izr_A	330	Structure Of Casein Kinase Gamma 3 In Complex With		2e-08
2c47_A	313	Structure Of Casein Kinase 1 Gamma 2 Length = 313		2e-08
4hgl_A	330	Crystal Structure Of Ck1g3 With Compound 1 Length =		2e-08
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-08
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-08
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		3e-08
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		3e-07
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		3e-08
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		3e-07
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		3e-08
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		3e-08
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		3e-08
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		8e-07
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		4e-08
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		4e-08
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		4e-08
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		5e-08
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		6e-08
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		6e-08
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		6e-08
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		7e-08
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		7e-08
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		7e-08
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		7e-08
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		7e-08
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		7e-08
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		8e-08
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		8e-08
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		9e-08
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		9e-08
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		9e-08
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		1e-07
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		1e-07
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		1e-07
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		1e-07
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-07
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		1e-07
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		1e-05
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		1e-07
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		1e-07
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		2e-07
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		2e-07
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		2e-07
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		2e-07
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		2e-07
2cmw_A	310	Structure Of Human Casein Kinase 1 Gamma-1 In Compl		3e-07
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		3e-07
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		3e-07
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		3e-07
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		4e-07
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		4e-07
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		4e-07
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		5e-07
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		7e-07
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		9e-07
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		1e-06
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		2e-06
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		3e-06
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		3e-06
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		3e-06
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		3e-06
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		5e-06
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		5e-06
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		5e-06
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		5e-06
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		6e-06
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		6e-06
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		6e-06
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		6e-06
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		6e-06
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		6e-06
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		6e-06
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		7e-06
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		7e-06
3sv0_A	483	Crystal Structure Of Casein Kinase-1 Like Protein I		7e-06
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		7e-06
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		7e-06
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		7e-06
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		7e-06
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		7e-06
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		7e-06
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		7e-06
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		7e-06
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		7e-06
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		7e-06
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		8e-06
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		8e-06
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		9e-06
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		9e-06
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		9e-06
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		3e-04
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		9e-06
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		2e-04
3eb0_A	383	Crystal Structure Of Cgd4_240 From Cryptosporidium		9e-06
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		1e-05
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		1e-05
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		1e-05
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		1e-05
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		1e-05
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		1e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		1e-05
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		1e-05
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		2e-05
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		2e-05
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		2e-05
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		2e-05
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		2e-05
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		1e-04
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		2e-05
3uys_A	296	Crystal Structure Of Apo Human Ck1d Length = 296		2e-05
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		3e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		3e-05
1ckj_A	317	Casein Kinase I Delta Truncation Mutant Containing		3e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		3e-05
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		4e-05
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		4e-05
4hni_A	296	Crystal Structure Of Ck1e In Complex With Pf4800567		4e-05
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		4e-05
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		4e-05
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		4e-05
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		5e-05
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		5e-05
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		5e-05
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		5e-05
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		5e-05
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		5e-05
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		5e-05
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		5e-05
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		5e-05
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		5e-05
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		5e-05
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		6e-05
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		6e-05
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		6e-05
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		6e-05
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		6e-05
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		6e-05
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		6e-05
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		6e-05
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		6e-05
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		8e-05
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		8e-05
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		9e-05
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		9e-05
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		9e-05
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		1e-04
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		1e-04
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		1e-04
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		1e-04
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		1e-04
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		2e-04
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		2e-04
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		2e-04
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		2e-04
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		3e-04
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		3e-04
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		3e-04
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-04
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		3e-04
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		3e-04
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		3e-04
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		3e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		3e-04
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		4e-04
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		4e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		5e-04
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		6e-04
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		6e-04
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		7e-04
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		7e-04
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		7e-04
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		8e-04
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		8e-04
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		8e-04
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		8e-04
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		8e-04
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		9e-04
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		9e-04
3rgf_A	405	Crystal Structure Of Human Cdk8CYCC Length = 405		9e-04

>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide Length = 397

Iteration: 1
 Score =  236 bits (603), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 134/167 (80%)
Query: 300 AVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           A  LK K+ D GNACW +K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATG
Sbjct: 230 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 289
Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
           D LF+PHSG+ Y RDEDH+AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W 
Sbjct: 290 DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 349
Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           L +VL+EKY++S+++A    DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct: 350 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 396

>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its Substrate AsfSF2 Length = 381

Iteration: 1
 Score =  236 bits (602), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 134/167 (80%)
Query: 300 AVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           A  LK K+ D GNACW +K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATG
Sbjct: 214 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 273
Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
           D LF+PHSG+ Y RDEDH+AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W 
Sbjct: 274 DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 333
Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           L +VL+EKY++S+++A    DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct: 334 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 380

>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific Kinase 2 (Srpk2) Bound To Purvalanol B Length = 389

Iteration: 1
 Score =  230 bits (587), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 99/164 (60%), Positives = 128/164 (78%)
Query: 303 LKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
           ++ K+ D GNACW +K FT DIQTRQYR  EVL+G+ YSTPAD+WS AC+ FELATGD L
Sbjct: 225 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 284
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F+PHSG++Y RDEDH+A ++ELLG +PR  A  G+YSR+FFNR G+LRHI +L+ W L  
Sbjct: 285 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 344
Query: 423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           VL+EKY +  +DA    DFL+P+L+ VPEKR +A +CL HPW+N
Sbjct: 345 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLN 388

>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With Bound Adp Length = 373

Iteration: 1
 Score =  188 bits (478), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 114/163 (69%)
Query: 303 LKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
           ++ K+ D GNACW  + +TN IQTR+YR PEVLLG+ +   AD+WS AC+ FEL TGD L
Sbjct: 175 IQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFL 234
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F+P  G +Y +D+DH+A ++ELLG +P  +   G+Y+R FFN  G LR+I +L+FWPL  
Sbjct: 235 FEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLED 294
Query: 423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           VL EKY FS+ +A +++DFL P+L   P KR  A   + HPW+
Sbjct: 295 VLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 337

>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase In Yeast Length = 373

Iteration: 1
 Score =  188 bits (478), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 114/163 (69%)
Query: 303 LKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
           ++ K+ D GNACW  + +TN IQTR+YR PEVLLG+ +   AD+WS AC+ FEL TGD L
Sbjct: 175 IQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFL 234
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F+P  G +Y +D+DH+A ++ELLG +P  +   G+Y+R FFN  G LR+I +L+FWPL  
Sbjct: 235 FEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLED 294
Query: 423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           VL EKY FS+ +A +++DFL P+L   P KR  A   + HPW+
Sbjct: 295 VLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 337

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
           RY V   +G G F  V  A+D +   +VALK+ ++ + +   A +EI+IL+ + + D D+
Sbjct: 98  RYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDN 157
Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
              V+ +L++F        H+CM FE L  NL  LIK   ++G  L +V++    IL  L
Sbjct: 158 TMNVIHMLENFTFR----NHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCL 213
Query: 163 DHLHRELSIIHTDLKPENVLL 183
           D LH+   IIH DLKPEN+LL
Sbjct: 214 DALHKN-RIIHCDLKPENILL 233

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 31/181 (17%)
Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           K++DFG++C+ +++    IQ+R YR PEV+LG++Y  P D+WS  CI  EL TG  L   
Sbjct: 242 KVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLL-- 299
Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR------------ 413
             G++   + D LA M+ELLGM  +K+    + +++F +  G  R+              
Sbjct: 300 -PGED---EGDQLACMIELLGMPSQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVLN 355
Query: 414 -------RLRFWPLNKVLIEKYDFSEKDAND--MADFLVPILDFVPEKRPTAAQCLTHPW 464
                  +LR  P ++    ++  + K  +D    DFL   L++ P  R T  Q L HPW
Sbjct: 356 GGRSRRGKLRGPPESR----EWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPW 411
Query: 465 I 465
           +
Sbjct: 412 L 412

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
           RY V   +G G F  V  A+D +   +VALK+ ++ + +   A +EI+IL+ + + D D+
Sbjct: 98  RYEVLKVIGKGXFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDN 157
Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
              V+ +L++F        H+CM FE L  NL  LIK   ++G  L +V++    IL  L
Sbjct: 158 TMNVIHMLENFTFR----NHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCL 213
Query: 163 DHLHRELSIIHTDLKPENVLL 183
           D LH+   IIH DLKPEN+LL
Sbjct: 214 DALHKN-RIIHCDLKPENILL 233

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 31/181 (17%)
Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           K++DFG++C+ +++    IQ+R YR PEV+LG++Y  P D+WS  CI  EL TG  L   
Sbjct: 242 KVIDFGSSCYEHQRVYXXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLL-- 299
Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR------------ 413
             G++   + D LA M+ELLGM  +K+    + +++F +  G  R+              
Sbjct: 300 -PGED---EGDQLACMIELLGMPXQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVLN 355
Query: 414 -------RLRFWPLNKVLIEKYDFSEKDAND--MADFLVPILDFVPEKRPTAAQCLTHPW 464
                  +LR  P ++    ++  + K  +D    DFL   L++ P  R T  Q L HPW
Sbjct: 356 GGRSRRGKLRGPPESR----EWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPW 411
Query: 465 I 465
           +
Sbjct: 412 L 412

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
           RY V   +G G F  V  A+D +   +VALK+ ++ + +   A +EI+IL+ + + D D+
Sbjct: 98  RYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDN 157
Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
              V+ +L++F        H+CM FE L  NL  LIK   ++G  L +V++    IL  L
Sbjct: 158 TMNVIHMLENFTFR----NHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCL 213
Query: 163 DHLHRELSIIHTDLKPENVLL 183
           D LH+   IIH DLKPEN+LL
Sbjct: 214 DALHKN-RIIHCDLKPENILL 233

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 31/181 (17%)
Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           K++DFG++C+ +++    IQ+R YR PEV+LG++Y  P D+WS  CI  EL TG  L   
Sbjct: 242 KVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLL-- 299
Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR------------ 413
             G++   + D LA M+ELLGM  +K+    + +++F +  G  R+              
Sbjct: 300 -PGED---EGDQLACMIELLGMPSQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVLN 355
Query: 414 -------RLRFWPLNKVLIEKYDFSEKDAND--MADFLVPILDFVPEKRPTAAQCLTHPW 464
                  +LR  P ++    ++  + K  +D    DFL   L++ P  R T  Q L HPW
Sbjct: 356 GGRSRRGKLRGPPESR----EWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPW 411
Query: 465 I 465
           +
Sbjct: 412 L 412

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 7/158 (4%)
Query: 29  GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTS-HYVALKVQKSAQHYTEAALD 87
           G+    +GD  +  RY + S LG G F  V    D +     VALK+ K+ + Y EAA  
Sbjct: 21  GHLIYHVGDWLQE-RYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARL 79
Query: 88  EIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVP 147
           EI +L++I E DPD+K   V++ D F + G    H+C+ FE LG +    +K  +Y   P
Sbjct: 80  EINVLEKINEKDPDNKNLCVQMFDWFDYHG----HMCISFELLGLSTFDFLKDNNYLPYP 135
Query: 148 LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +H V+ + F +   +  LH +  + HTDLKPEN+L ++
Sbjct: 136 IHQVRHMAFQLCQAVKFLH-DNKLTHTDLKPENILFVN 172

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           ++VDFG+A + ++  +  + TR YR PEV+L   +S P D+WS  CI FE   G  LF  
Sbjct: 196 RVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVGFTLFQT 255
Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL-RHIRRLRFWPLNKVL 424
           H       + +HLA+M  +LG +P ++    R  + F+    D   +    R+   N   
Sbjct: 256 HD------NREHLAMMERILGPIPSRMIRKTRKQKYFYRGRLDWDENTSAGRYVRENCKP 309
Query: 425 IEKYDFSE-KDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           + +Y  SE ++ + + D +  +L++ P KR T  + L HP+ 
Sbjct: 310 LRRYLTSEAEEHHQLFDLIESMLEYEPAKRLTLGEALQHPFF 351

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 40  KNG-----RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQ 94
           KNG     RY + S +G G F  V  A+D     +VA+K+ K+ + +   A  E+++L+ 
Sbjct: 28  KNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLEL 87
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           + + D + K  +V L  HF        H+C+VFE L  NL  L++  ++RGV L++ ++ 
Sbjct: 88  MNKHDTEMKYYIVHLKRHFMFR----NHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKF 143
Query: 155 CFHILVGLDHLHR-ELSIIHTDLKPENVLL 183
              +   L  L   ELSIIH DLKPEN+LL
Sbjct: 144 AQQMCTALLFLATPELSIIHCDLKPENILL 173

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           K+VDFG++C   ++    IQ+R YR PEVLLG  Y    D+WS  CI  E+ TG+ LF  
Sbjct: 182 KIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLF-- 239
Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD 408
            SG N   + D +  ++E+LG+ P  I      +R FF +  D
Sbjct: 240 -SGAN---EVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD 278

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score = 88.2 bits (217), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 40  KNG-----RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQ 94
           KNG     RY + S +G G F  V  A+D     +VA+K+ K+ + +   A  E+++L+ 
Sbjct: 47  KNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLEL 106
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           + + D + K  +V L  HF        H+C+VFE L  NL  L++  ++RGV L++ ++ 
Sbjct: 107 MNKHDTEMKYYIVHLKRHFMFR----NHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKF 162
Query: 155 CFHILVGLDHLHR-ELSIIHTDLKPENVLL 183
              +   L  L   ELSIIH DLKPEN+LL
Sbjct: 163 AQQMCTALLFLATPELSIIHCDLKPENILL 192

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           K+VDFG++C   ++    IQ+R YR PEVLLG  Y    D+WS  CI  E+ TG+ LF  
Sbjct: 201 KIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLF-- 258
Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD 408
            SG N   + D +  ++E+LG+ P  I      +R FF +  D
Sbjct: 259 -SGAN---EVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD 297

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 88.2 bits (217), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 40  KNG-----RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQ 94
           KNG     RY + S +G G F  V  A+D     +VA+K+ K+ + +   A  E+++L+ 
Sbjct: 47  KNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLEL 106
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           + + D + K  +V L  HF        H+C+VFE L  NL  L++  ++RGV L++ ++ 
Sbjct: 107 MNKHDTEMKYYIVHLKRHFMFR----NHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKF 162
Query: 155 CFHILVGLDHLHR-ELSIIHTDLKPENVLL 183
              +   L  L   ELSIIH DLKPEN+LL
Sbjct: 163 AQQMCTALLFLATPELSIIHCDLKPENILL 192

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           K+VDFG++C   ++    IQ+R YR PEVLLG  Y    D+WS  CI  E+ TG+ LF  
Sbjct: 201 KIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLF-- 258
Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD 408
            SG N   + D +  ++E+LG+ P  I      +R FF +  D
Sbjct: 259 -SGAN---EVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD 297

>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3 Length = 357

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 7/160 (4%)
Query: 27  RGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWD-TQTSHYVALKVQKSAQHYTEAA 85
           + G+   R+GD  +  RY +   LG G F  V    D  +    VALK+ ++   Y EAA
Sbjct: 14  KEGHLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAA 72
Query: 86  LDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRG 145
             EI +LK+I E D ++K   V + D F   G    H+C+ FE LG+N    +K  +++ 
Sbjct: 73  RLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQP 128
Query: 146 VPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
            PL  V+ + + +   L  LH E  + HTDLKPEN+L ++
Sbjct: 129 YPLPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFVN 167

>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3 Length = 357

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           ++ DFG+A + ++  T  + TR YR PEV+L   ++ P D+WS  CI FE   G  LF  
Sbjct: 191 RVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT 250
Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN-------RHGDLRHIRRLRFW 418
           H       + +HL +M ++LG +P  +    R  + F+           D R+++     
Sbjct: 251 HE------NREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKE-NCK 303
Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           PL   +++       +   + D +  +L+F P +R T A+ L HP+ 
Sbjct: 304 PLKSYMLQ----DSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFF 346

>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki Length = 381

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 7/158 (4%)
Query: 29  GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWD-TQTSHYVALKVQKSAQHYTEAALD 87
           G+   R+GD  +  RY +   LG G F  V    D  +    VALK+ ++   Y EAA  
Sbjct: 39  GHLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARL 97
Query: 88  EIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVP 147
           EI +LK+I E D ++K   V + D F   G    H+C+ FE LG+N    +K  +++  P
Sbjct: 98  EINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQPYP 153
Query: 148 LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           L  V+ + + +   L  LH E  + HTDLKPEN+L ++
Sbjct: 154 LPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFVN 190

>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki Length = 381

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           ++ DFG+A + ++  T  + TR YR PEV+L   ++ P D+WS  CI FE   G  LF  
Sbjct: 214 RVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT 273
Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN-------RHGDLRHIRRLRFW 418
           H       + +HL +M ++LG +P  +    R  + F+           D R+++     
Sbjct: 274 HE------NREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKE-NCK 326
Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           PL   +++       +   + D +  +L+F P +R T A+ L HP+ 
Sbjct: 327 PLKSYMLQ----DSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFF 369

>pdb|2EU9|A Chain A, Crystal Structure Of Clk3 Length = 355

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 7/160 (4%)
Query: 27  RGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWD-TQTSHYVALKVQKSAQHYTEAA 85
           + G+   R+GD  +  RY +   LG G F  V    D  +    VALK+ ++   Y EAA
Sbjct: 5   KEGHLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAA 63
Query: 86  LDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRG 145
             EI +LK+I E D ++K   V + D F   G    H+C+ FE LG+N    +K  +++ 
Sbjct: 64  RLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQP 119
Query: 146 VPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
            PL  V+ + + +   L  LH E  + HTDLKPEN+L ++
Sbjct: 120 YPLPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFVN 158

>pdb|2EU9|A Chain A, Crystal Structure Of Clk3 Length = 355

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           ++ DFG+A + ++  T  + TR YR PEV+L   ++ P D+WS  CI FE   G  LF  
Sbjct: 182 RVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT 241
Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN-------RHGDLRHIRRLRFW 418
           H       + +HL +M ++LG +P  +    R  + F+           D R+++     
Sbjct: 242 HE------NREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKE-NCK 294
Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           PL   +++       +   + D +  +L+F P +R T A+ L HP+ 
Sbjct: 295 PLKSYMLQ----DSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFF 337

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 7/150 (4%)
Query: 36  GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTS-HYVALKVQKSAQHYTEAALDEIKILKQ 94
           GD   + RY +   LG G F  V    D +    +VA+K+ K+   Y EAA  EI++L+ 
Sbjct: 9   GDVL-SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEH 67
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           +   DP+     V++L+ F+H G    H+C+VFE LG +    IK   +    L  ++++
Sbjct: 68  LNTTDPNSTFRCVQMLEWFEHHG----HICIVFELLGLSTYDFIKENGFLPFRLDHIRKM 123
Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLLM 184
            + I   ++ LH    + HTDLKPEN+L +
Sbjct: 124 AYQICKSVNFLHSN-KLTHTDLKPENILFV 152

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
Query: 267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQT 326
           +N   ++++ T  E  N   KR  R+        ++   K+VDFG+A +  +  +  + T
Sbjct: 147 ENILFVQSDYT--EAYNPKIKRDERT-------LINPDIKVVDFGSATYDDEHHSTLVST 197
Query: 327 RQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG 386
           R YR PEV+L   +S P D+WS  CI  E   G  +F  H        ++HLA+M  +LG
Sbjct: 198 RHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDS------KEHLAMMERILG 251
Query: 387 MMPRKIAFGGRYSRDFFNRHGDL-------RHIRRLRFWPLNKVLIEKYDFSEKDANDMA 439
            +P+ +    R  + F +   D        R++ R    PL + ++ +    + +   + 
Sbjct: 252 PLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSR-ACKPLKEFMLSQ----DVEHERLF 306
Query: 440 DFLVPILDFVPEKRPTAAQCLTHPWINV 467
           D +  +L++ P KR T  + L HP+ ++
Sbjct: 307 DLIQKMLEYDPAKRITLREALKHPFFDL 334

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 7/150 (4%)
Query: 36  GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTS-HYVALKVQKSAQHYTEAALDEIKILKQ 94
           GD   + RY +   LG G F  V    D +    +VA+K+ K+   Y EAA  EI++L+ 
Sbjct: 9   GDVL-SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEH 67
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           +   DP+     V++L+ F+H G    H+C+VFE LG +    IK   +    L  ++++
Sbjct: 68  LNTTDPNSTFRCVQMLEWFEHHG----HICIVFELLGLSTYDFIKENGFLPFRLDHIRKM 123
Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLLM 184
            + I   ++ LH    + HTDLKPEN+L +
Sbjct: 124 AYQICKSVNFLHSN-KLTHTDLKPENILFV 152

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 25/210 (11%)
Query: 265 DQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDI 324
           D +  +++  ++   E  N   KR  R+        ++   K+VDFG+A +  +  +  +
Sbjct: 143 DLKPENILFVQSDYTEAYNPKIKRDERT-------LINPDIKVVDFGSATYDDEHHSTLV 195
Query: 325 QTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMEL 384
             R YR PEV+L   +S P D+WS  CI  E   G  +F  H        ++HLA+M  +
Sbjct: 196 XXRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDS------KEHLAMMERI 249
Query: 385 LGMMPRKIAFGGRYSRDFFNRHGDL-------RHIRRLRFWPLNKVLIEKYDFSEKDAND 437
           LG +P+ +    R  + F +   D        R++ R    PL + ++ +    + +   
Sbjct: 250 LGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSR-ACKPLKEFMLSQ----DVEHER 304
Query: 438 MADFLVPILDFVPEKRPTAAQCLTHPWINV 467
           + D +  +L++ P KR T  + L HP+ ++
Sbjct: 305 LFDLIQKMLEYDPAKRITLREALKHPFFDL 334

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDP 100
           N  ++V  K+G G F  V L        Y A+KV ++ + YT +A  E  ILK+I + D 
Sbjct: 34  NNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKI-QNDD 92
Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILV 160
            +   +VK    F +      H+C++FE LG +L  +I   +Y G  +  +K  C  IL 
Sbjct: 93  INNNNIVKYHGKFMYY----DHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILK 148
Query: 161 GLDHLHRELSIIHTDLKPENVLL 183
            L++L R++S+ HTDLKPEN+LL
Sbjct: 149 ALNYL-RKMSLTHTDLKPENILL 170

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 32/194 (16%)
Query: 287 KRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADL 346
           +R +  ++ ++        KL+DFG A +      + I TRQYR PEV+L   +   +D+
Sbjct: 183 RRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDM 242
Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAF------GGRY-S 399
           WSF C+  EL TG +LF  H         +HLA+M  ++  +P+ + +      G +Y +
Sbjct: 243 WSFGCVLAELYTGSLLFRTH------EHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVN 296
Query: 400 RDFF--------NRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPE 451
           +D          +    ++H+++    PL K++  K++          DFL  IL   P 
Sbjct: 297 KDELKLAWPENASSINSIKHVKKC--LPLYKII--KHEL-------FCDFLYSILQIDPT 345
Query: 452 KRPTAAQCLTHPWI 465
            RP+ A+ L H ++
Sbjct: 346 LRPSPAELLKHKFL 359

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAE 97
             RY   +++G G + TV+ A D  + H+VALK   V    +    + + E+ +L+++  
Sbjct: 3   TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRL-- 60
Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQ-HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICF 156
            +  +   VV+L+D    S  + +  V +VFE++ ++L T +  A   G+P   +K++  
Sbjct: 61  -EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMR 119
Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
             L GLD LH    I+H DLKPEN+L+ S
Sbjct: 120 QFLRGLDFLHAN-CIVHRDLKPENILVTS 147

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 27/166 (16%)
Query: 305 CKLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
            KL DFG A     Q   D  + T  YR PEVLL S Y+TP D+WS  CI  E+     L
Sbjct: 151 VKLADFGLARIYSYQMALDPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 210
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL--RHIRRLRFWPL 420
           F  +S      + D L  + +L+G+ P        + RD     G    R  R     P+
Sbjct: 211 FCGNS------EADQLGKIFDLIGLPPED-----DWPRDVSLPRGAFPPRGPR-----PV 254
Query: 421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             V+ E  +         A  L+ +L F P KR +A + L H +++
Sbjct: 255 QSVVPEMEESG-------AQLLLEMLTFNPHKRISAFRALQHSYLH 293

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 304 KCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATG 359
           + KL DFG A         F++++ T  YR P+VL+GS+ YST  D+WS  CI  E+ TG
Sbjct: 146 QLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITG 205
Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
             LF    G N   DE+ L L+ +++G  P +  +        +N +   R  R LR   
Sbjct: 206 KPLF---PGTN---DEEQLKLIFDIMG-TPNESLWPSVTKLPKYNPNIQQRPPRDLR--- 255
Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
               +++ +     D N M DFL  +L   P+ R +A Q L HPW 
Sbjct: 256 ---QVLQPHTKEPLDGNLM-DFLHGLLQLNPDMRLSAKQALHHPWF 297

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAE 97
             RY   +++G G + TV+ A D  + H+VALK   V    +    + + E+ +L+++  
Sbjct: 3   TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRL-- 60
Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQ-HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICF 156
            +  +   VV+L+D    S  + +  V +VFE++ ++L T +  A   G+P   +K++  
Sbjct: 61  -EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMR 119
Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
             L GLD LH    I+H DLKPEN+L+ S
Sbjct: 120 QFLRGLDFLHAN-CIVHRDLKPENILVTS 147

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 305 CKLVDFGNA-CWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
            KL DFG A  ++Y+      + T  YR PEVLL S Y+TP D+WS  CI  E+     L
Sbjct: 151 VKLADFGLARIYSYQMALAPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 210
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL--RHIRRLRFWPL 420
           F  +S      + D L  + +L+G+ P        + RD     G    R  R     P+
Sbjct: 211 FCGNS------EADQLGKIFDLIGLPPED-----DWPRDVSLPRGAFPPRGPR-----PV 254
Query: 421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             V+ E  +         A  L+ +L F P KR +A + L H +++
Sbjct: 255 QSVVPEMEESG-------AQLLLEMLTFNPHKRISAFRALQHSYLH 293

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAE 97
             RY   +++G G + TV+ A D  + H+VALK   V    +    + + E+ +L+++  
Sbjct: 3   TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRL-- 60
Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQ-HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICF 156
            +  +   VV+L+D    S  + +  V +VFE++ ++L T +  A   G+P   +K++  
Sbjct: 61  -EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMR 119
Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
             L GLD LH    I+H DLKPEN+L+ S
Sbjct: 120 QFLRGLDFLHAN-CIVHRDLKPENILVTS 147

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 305 CKLVDFGNA-CWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
            KL DFG A  ++Y+      + T  YR PEVLL S Y+TP D+WS  CI  E+     L
Sbjct: 151 VKLADFGLARIYSYQMALFPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 210
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL--RHIRRLRFWPL 420
           F  +S      + D L  + +L+G+ P        + RD     G    R  R     P+
Sbjct: 211 FCGNS------EADQLGKIFDLIGLPPED-----DWPRDVSLPRGAFPPRGPR-----PV 254
Query: 421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             V+ E  +         A  L+ +L F P KR +A + L H +++
Sbjct: 255 QSVVPEMEESG-------AQLLLEMLTFNPHKRISAFRALQHSYLH 293

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 5/152 (3%)
Query: 38  TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIA- 96
           +    RY   +++G G + TV+ A D  + H+VALK  +            I  ++++A 
Sbjct: 5   SMATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVAL 64
Query: 97  --EGDPDDKKCVVKLLDHFKHSGPNGQ-HVCMVFEYLGENLLTLIKYADYRGVPLHMVKE 153
               +  +   VV+L+D    S  + +  V +VFE++ ++L T +  A   G+P   +K+
Sbjct: 65  LRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKD 124
Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +    L GLD LH    I+H DLKPEN+L+ S
Sbjct: 125 LMRQFLRGLDFLHAN-CIVHRDLKPENILVTS 155

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 27/166 (16%)
Query: 305 CKLVDFGNA-CWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
            KL DFG A  ++Y+   T  + T  YR PEVLL S Y+TP D+WS  CI  E+     L
Sbjct: 159 VKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 218
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL--RHIRRLRFWPL 420
           F  +S      + D L  + +L+G+ P        + RD     G    R  R     P+
Sbjct: 219 FCGNS------EADQLGKIFDLIGLPPED-----DWPRDVSLPRGAFPPRGPR-----PV 262
Query: 421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             V+ E  +         A  L+ +L F P KR +A + L H +++
Sbjct: 263 QSVVPEMEESG-------AQLLLEMLTFNPHKRISAFRALQHSYLH 301

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 20/148 (13%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA-------ALDEIKILKQI 95
           RY     LG G F+TV+ A D  T+  VA+K  K   H +EA       AL EIK+L+++
Sbjct: 11  RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLG-HRSEAKDGINRTALREIKLLQEL 69
Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEIC 155
           +  +      ++ LLD F H      ++ +VF+++  +L  +IK       P H +K   
Sbjct: 70  SHPN------IIGLLDAFGHK----SNISLVFDFMETDLEVIIKDNSLVLTPSH-IKAYM 118
Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
              L GL++LH+   I+H DLKP N+LL
Sbjct: 119 LMTLQGLEYLHQHW-ILHRDLKPNNLLL 145

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDV 361
           KL DFG A       + + + + TR YR PE+L G++ Y    D+W+  CI  EL    V
Sbjct: 152 KLADFGLAKSFGSPNRAYXHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLL-RV 210
Query: 362 LFDPHSGDNYDRDEDHLALMMELLG 386
            F P      D D D L  + E LG
Sbjct: 211 PFLPG-----DSDLDQLTRIFETLG 230

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 35/180 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA-CWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI 352
           + +L     + KL DFG A  ++++   T+ + T  YR PEVLL S Y+TP DLWS  CI
Sbjct: 149 QNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCI 208
Query: 353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-----MPRKIAFGGRYSRDFFNRHG 407
             E+     LF   S      D D L  +++++G+      PR +A              
Sbjct: 209 FAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVA-------------- 248
Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
               + R  F   +   IEK+     D +++  D L+  L F P KR +A   L+HP+  
Sbjct: 249 ----LPRQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQ 301

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 35/180 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA-CWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI 352
           + +L     + KL DFG A  ++++   T+ + T  YR PEVLL S Y+TP DLWS  CI
Sbjct: 149 QNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCI 208
Query: 353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-----MPRKIAFGGRYSRDFFNRHG 407
             E+     LF   S      D D L  +++++G+      PR +A              
Sbjct: 209 FAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVA-------------- 248
Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
               + R  F   +   IEK+     D +++  D L+  L F P KR +A   L+HP+  
Sbjct: 249 ----LPRQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQ 301

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 35/180 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA-CWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI 352
           + +L     + KL DFG A  ++++   T+ + T  YR PEVLL S Y+TP DLWS  CI
Sbjct: 149 QNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCI 208
Query: 353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-----MPRKIAFGGRYSRDFFNRHG 407
             E+     LF   S      D D L  +++++G+      PR +A              
Sbjct: 209 FAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVA-------------- 248
Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
               + R  F   +   IEK+     D +++  D L+  L F P KR +A   L+HP+  
Sbjct: 249 ----LPRQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQ 301

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGD 360
           D + K++DFG A     + T  + TR YR PEV+L    Y+   D+WS  CI  E+ TG 
Sbjct: 180 DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK 239
Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL 420
            LF    G +Y    D L  ++++ G+       G  + +   N      +I+ L   P 
Sbjct: 240 TLF---KGKDY---LDQLTQILKVTGVP------GTEFVQK-LNDKAAKSYIQSLPQTP- 285
Query: 421 NKVLIEKYDFSE---KDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
                 + DF++   + +   AD L  +L+   +KR TAAQ LTHP+  
Sbjct: 286 ------RKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFE 328

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGD 360
           D + K++DFG A     + T  + TR YR PEV+L    Y+   D+WS  CI  E+ TG 
Sbjct: 162 DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK 221
Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL 420
            LF    G +Y    D L  ++++ G+       G  + +   N      +I+ L   P 
Sbjct: 222 TLF---KGKDY---LDQLTQILKVTGVP------GTEFVQK-LNDKAAKSYIQSLPQTP- 267
Query: 421 NKVLIEKYDFSE---KDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
                 + DF++   + +   AD L  +L+   +KR TAAQ LTHP+  
Sbjct: 268 ------RKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFE 310

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 S-KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
           +  Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 AMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 25/176 (14%)
Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACIC 353
           L+   D   KL DFG+A        N   I +R YR PE++ G++ Y+T  D+WS  CI 
Sbjct: 163 LVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIF 222
Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSR---DFFNRHGDLR 410
            E+  G+ +F    GDN       L  ++ +LG   R++      S    D +N  G   
Sbjct: 223 AEMMLGEPIF---RGDN---SAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKG--- 273
Query: 411 HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
                   P + V     D S KDA +  D L  +L ++PE+R    + L HP+ +
Sbjct: 274 -------IPWSNVF---SDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFD 319

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 161 SNLAVNEDCE-----------------LKILDFGLARHTADEMTGYVATRWYRAPEIMLN 203
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 204 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 257
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 258 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 301
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 302 KRITAAQALAHAYF 315

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 161 SNLAVNEDCE-----------------LKILDFGLARHTADEMTGYVATRWYRAPEIMLN 203
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 204 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 257
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 258 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 301
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 302 KRITAAQALAHAYF 315

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 22/164 (13%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGDVL 362
           KL+DFG+A        N   I +R YR PE++ G + Y+T  D+WS  C+  EL  G  L
Sbjct: 182 KLIDFGSAKILIAGEPNVSXICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPL 241
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F   SG       D L  ++++LG          R      N +       ++R  P +K
Sbjct: 242 FPGESGI------DQLVEIIKVLGT-------PSREQIKTMNPNYMEHKFPQIRPHPFSK 288
Query: 423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           V      F  +   D  D +  +L++ P  R TA + L HP+ +
Sbjct: 289 V------FRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFD 326

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 161 SNLAVNEDCE-----------------LKILDFGLARHTADEMTGYVATRWYRAPEIMLN 203
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 204 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 257
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 258 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 301
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 302 KRITAAQALAHAYF 315

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGXVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 34/194 (17%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           S + I++D K PS     E     D + K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 143 SADIIHRDLK-PSNLAVNE-----DXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 166 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 208
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 209 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 262
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 263 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 306
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 307 KRITAAQALAHAYF 320

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 174 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 216
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 217 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 270
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 271 S--SESARNYIQ---SLAQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 314
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 315 KRITAAQALAHAYF 328

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 165 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 207
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 208 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 261
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 262 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 305
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 306 KRITAAQALAHAYF 319

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 173 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 215
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 216 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 269
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 270 S--SESARNYIQ---SLAQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 313
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 314 KRITAAQALAHAYF 327

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 160 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 202
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 203 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 256
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 257 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 300
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 301 KRITAAQALAHAYF 314

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 166 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 208
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 209 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 262
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 263 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 306
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 307 KRITAAQALAHAYF 320

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 177 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 219
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 220 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 273
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 274 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 317
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 318 KRITAAQALAHAYF 331

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 166 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 208
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 209 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 262
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 263 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 306
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 307 KRITAAQALAHAYF 320

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 160 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 202
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 203 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 256
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 257 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 300
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 301 KRITAAQALAHAYF 314

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 174 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 216
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 217 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 270
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 271 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 314
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 315 KRITAAQALAHAYF 328

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 160 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 202
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 203 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 256
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 257 S--SESARNYIQ---SLAQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 300
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 301 KRITAAQALAHAYF 314

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 156 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 198
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 199 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 252
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 253 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 296
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 297 KRITAAQALAHAYF 310

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 173 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 215
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 216 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 269
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 270 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 313
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 314 KRITAAQALAHAYF 327

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 156 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 198
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 199 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 252
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 253 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 296
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 297 KRITAAQALAHAYF 310

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 34/194 (17%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           S + I++D K PS     E     D + K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SADIIHRDLK-PSNLAVNE-----DXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 207
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 208 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 261
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 262 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 305
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 306 KRITAAQALAHAYF 319

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 34/194 (17%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           S + I++D K PS     E     D + K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 148 SADIIHRDLK-PSNLAVNE-----DXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 201
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 202 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 255
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 256 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 299
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 300 KRITAAQALAHAYF 313

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 161 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 203
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 204 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 257
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 258 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 301
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 302 KRITAAQALAHAYF 315

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLAQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 159 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 201
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 202 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 255
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 256 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 299
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 300 KRITAAQALAHAYF 313

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 153 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 195
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 196 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 249
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 250 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 293
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 294 KRITAAQALAHAYF 307

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 156 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 198
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 199 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 252
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 253 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 296
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 297 KRITAAQALAHAYF 310

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 164 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 206
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 207 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 260
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 261 S--SESARNYIQ---SLAQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 304
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 305 KRITAAQALAHAYF 318

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 34/194 (17%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           S + I++D K PS     E     D + K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 148 SADIIHRDLK-PSNLAVNE-----DXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 201
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 202 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 255
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 256 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 299
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 300 KRITAAQALAHAYF 313

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 13  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 66
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L T +  +   G+PL ++K   F +L GL   
Sbjct: 67  IVKLLDVIH----TENKLYLVFEFLHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 123 HSH-RVLHRDLKPQNLLI 139

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 135 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 194
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 195 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 237
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 238 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 289
Query: 465 IN 466
Sbjct: 290 FQ 291

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 159 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 201
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 202 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 255
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 256 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 299
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 300 KRITAAQALAHAYF 313

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 152 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 194
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 195 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 248
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 249 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 292
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 293 KRITAAQALAHAYF 306

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 151 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 193
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 194 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 247
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 248 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 291
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 292 KRITAAQALAHAYF 305

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 34/194 (17%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           S + I++D K PS     E     D + K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 149 SADIIHRDLK-PSNLAVNE-----DSELKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 202
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 203 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 256
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 257 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 300
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 301 KRITAAQALAHAYF 314

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 151 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 193
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 194 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 247
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 248 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 291
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 292 KRITAAQALAHAYF 305

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 34/194 (17%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           S + I++D K PS     E     D + K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 145 SADIIHRDLK-PSNLAVNE-----DSELKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 198
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 199 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 252
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 253 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 296
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 297 KRITAAQALAHAYF 310

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 150 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 192
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 193 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 246
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 247 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 290
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 291 KRITAAQALAHAYF 304

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 150 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 192
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 193 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 246
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 247 S--SESARNYIQ---SLAQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 290
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 291 KRITAAQALAHAYF 304

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 150 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 192
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 193 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 246
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 247 S--SESARNYIQ---SLAQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 290
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 291 KRITAAQALAHAYF 304

>pdb|2CHL|A Chain A, Structure Of Casein Kinase 1 Gamma 3 Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 19  DEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA 78
           D GTE+        + +G  F+ G+     K+G G+F  + L  +  T+ YVA+K++   
Sbjct: 12  DLGTENLYFQSMGVLMVGPNFRVGK-----KIGCGNFGELRLGKNLYTNEYVAIKLEPMK 66
Query: 79  QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLI 138
               +  L E +  KQ+  GD          +    + GP G++  MV E LG +L  L 
Sbjct: 67  SRAPQLHL-EYRFYKQLGSGDG---------IPQVYYFGPCGKYNAMVLELLGPSLEDLF 116
Query: 139 KYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
              D R   L  V  I   ++  ++++H + ++I+ D+KPEN L+
Sbjct: 117 DLCD-RTFSLKTVLMIAIQLISRMEYVHSK-NLIYRDVKPENFLI 159

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  +    + TR YR PE++L 
Sbjct: 174 SNLAVNEDCE-----------------LKILDFGLARHTDDEMXGXVATRWYRAPEIMLN 216
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 217 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 270
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 271 S--SESARNYIQ---SLAQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 314
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 315 KRITAAQALAHAYF 328

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 82/193 (42%), Gaps = 41/193 (21%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 183 SNLAVNEDCE-----------------LKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 225
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGG 396
              Y+   D+WS  CI  EL TG  LF      N       L  +M L G  P  +    
Sbjct: 226 WMHYNMTVDIWSVGCIMAELLTGRTLFPGTDHIN------QLQQIMRLTGTPPASVI--- 276
Query: 397 RYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK--DANDMA-DFLVPILDFVPEKR 453
             SR     H    +I  L   P       K +F++    AN +A D L  +L    +KR
Sbjct: 277 --SR--MPSHEARNYINSLPQMP-------KRNFADVFIGANPLAVDLLEKMLVLDTDKR 325
Query: 454 PTAAQCLTHPWIN 466
            TA++ L HP+ +
Sbjct: 326 ITASEALAHPYFS 338

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++D+G A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDYGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGD 360
           D + K++DFG A     +    + TR YR PEV+L   +Y+   D+WS  CI  E+ TG 
Sbjct: 164 DCELKILDFGLARQADSEMXGXVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK 223
Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL 420
            LF         +  DHL  + E++ +        G    +F  R         ++  P 
Sbjct: 224 TLF---------KGSDHLDQLKEIMKVT-------GTPPAEFVQRLQSDEAKNYMKGLP- 266
Query: 421 NKVLIEKYDFSE--KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
               +EK DF+    +A+ +A + L  +L    E+R TA + L HP+  
Sbjct: 267 ---ELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFE 312

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 39/181 (21%)
Query: 304 KCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATG 359
           + KL DFG A       K + N++ T  YR P++LLGS  YST  D+W   CI +E+ATG
Sbjct: 138 ELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATG 197
Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH--------GDLRH 411
             LF P S       E+ L  +  +LG  P +  + G  S + F  +          L H
Sbjct: 198 RPLF-PGS-----TVEEQLHFIFRILG-TPTEETWPGILSNEEFKTYNYPKYRAEALLSH 250
Query: 412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHP-WINVGPR 470
             RL                    +D AD L  +L F    R +A   + HP ++++G R
Sbjct: 251 APRLD-------------------SDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGER 291
Query: 471 L 471
           +
Sbjct: 292 I 292

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 12  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 65
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 66  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKPEN+L+
Sbjct: 122 HSH-RVLHRDLKPENLLI 138

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 134 ENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 193
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 194 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 236
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 237 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 288
Query: 465 IN 466
Sbjct: 289 FQ 290

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 11  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 64
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 65  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKPEN+L+
Sbjct: 121 HSH-RVLHRDLKPENLLI 137

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 133 ENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 192
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 193 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 235
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 236 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 287
Query: 465 IN 466
Sbjct: 288 FQ 289

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 13  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 66
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L  +L   +  +   G+PL ++K   F +L GL   
Sbjct: 67  IVKLLDVIH----TENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKPEN+L+
Sbjct: 123 HSH-RVLHRDLKPENLLI 139

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 135 ENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 194
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 195 CIFAEMVTRRALF 207

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 33/188 (17%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   D   KL DFG A       + +T+++ T  YR P+VL+GSK YST  D+WS  
Sbjct: 148 QNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIG 207
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDL 409
           CI  E+ TG  LF   +      D+D L  +  +LG   PR                 + 
Sbjct: 208 CIFAEMITGKPLFPGVT------DDDQLPKIFSILGTPNPR-----------------EW 244
Query: 410 RHIRRLRFWPLNKV-LIEKYDFSE---KDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
             ++ L  W      + EK  +S        +  D L  +L F P KR +A   + HP+ 
Sbjct: 245 PQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYF 304
Query: 466 -NVGPRLL 472
            ++ P+++
Sbjct: 305 KDLDPQIM 312

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 78/180 (43%), Gaps = 32/180 (17%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   D   KL DFG A       + +T+++ T  YR P+VL+GSK YST  D+WS  
Sbjct: 148 QNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIG 207
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDL 409
           CI  E+ TG  LF   +      D+D L  +  +LG   PR                 + 
Sbjct: 208 CIFAEMITGKPLFPGVT------DDDQLPKIFSILGTPNPR-----------------EW 244
Query: 410 RHIRRLRFWPLNKV-LIEKYDFSE---KDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
             ++ L  W      + EK  +S        +  D L  +L F P KR +A   + HP+ 
Sbjct: 245 PQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYF 304

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 11  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 64
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L  +L   +  +   G+PL ++K   F +L GL   
Sbjct: 65  IVKLLDVIH----TENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKPEN+L+
Sbjct: 121 HSH-RVLHRDLKPENLLI 137

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 133 ENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 192
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 193 CIFAEMVTRRALF 205

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  +    + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMAGFVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 10  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 63
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 64  IVKLLDVIH----TENKLYLVFEFLHQDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKPEN+L+
Sbjct: 120 HSH-RVLHRDLKPENLLI 136

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 132 ENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 191
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 192 CIFAEMVTRRALF 204

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  +    + TR YR PE++L 
Sbjct: 177 SNLAVNEDCE-----------------LKILDFGLARHTDDEMXGYVATRWYRAPEIMLN 219
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 220 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 273
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 274 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 317
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 318 KRITAAQALAHAYF 331

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  +    + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFGLARHTDDEMAGFVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLAQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 10  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 63
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 64  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLSFC 119
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 120 HSH-RVLHRDLKPQNLLI 136

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 132 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 191
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 192 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 234
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 235 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 286
Query: 465 IN 466
Sbjct: 287 FQ 288

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 14  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 67
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 68  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 123
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 124 HSH-RVLHRDLKPQNLLI 140

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 136 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 195
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 196 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 238
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 239 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 290
Query: 465 IN 466
Sbjct: 291 FQ 292

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 34/194 (17%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           S + I++D K PS     E     D + K++DFG    T  + T  + TR YR PE++L 
Sbjct: 143 SADIIHRDLK-PSNLAVNE-----DSELKILDFGLCRHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 17  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 70
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 71  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 126
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 127 HSH-RVLHRDLKPQNLLI 143

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 139 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIWSLG 198
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 199 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 241
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 242 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 293
Query: 465 IN 466
Sbjct: 294 FQ 295

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 17  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 70
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 71  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 126
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 127 HSH-RVLHRDLKPQNLLI 143

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 139 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 198
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 199 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 241
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 242 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 293
Query: 465 IN 466
Sbjct: 294 FQ 295

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 13  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 66
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 67  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 123 HSH-RVLHRDLKPQNLLI 139

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 135 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 194
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 195 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 237
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 238 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 289
Query: 465 IN 466
Sbjct: 290 FQ 291

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 12  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 65
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 66  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 122 HSH-RVLHRDLKPQNLLI 138

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 134 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 193
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 194 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 236
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 237 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 288
Query: 465 IN 466
Sbjct: 289 FQ 290

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 13  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 66
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 67  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 123 HSH-RVLHRDLKPQNLLI 139

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 135 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 194
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 195 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 237
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 238 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 289
Query: 465 IN 466
Sbjct: 290 FQ 291

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 12  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 65
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 66  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 122 HSH-RVLHRDLKPQNLLI 138

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 134 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 193
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 194 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 236
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 237 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 288
Query: 465 IN 466
Sbjct: 289 FQ 290

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 14  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 67
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 68  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 123
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 124 HSH-RVLHRDLKPQNLLI 140

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 136 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 195
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 196 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 238
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 239 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 290
Query: 465 IN 466
Sbjct: 291 FQ 292

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  +    + TR YR PE++L 
Sbjct: 150 SNLAVNEDCE-----------------LKILDFGLARHTDDEMAGFVATRWYRAPEIMLN 192
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 193 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 246
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 247 S--SESARNYIQ---SLAQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 290
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 291 KRITAAQALAHAYF 304

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 11  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 64
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 65  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 121 HSH-RVLHRDLKPQNLLI 137

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 133 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 192
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 193 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 235
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 236 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 287
Query: 465 IN 466
Sbjct: 288 FQ 289

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 11  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 64
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 65  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 121 HSH-RVLHRDLKPQNLLI 137

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 133 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 192
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 193 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 235
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 236 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 287
Query: 465 IN 466
Sbjct: 288 FQ 289

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++ FG A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILGFGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 10  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 63
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 64  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 120 HSH-RVLHRDLKPQNLLI 136

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 132 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIWSLG 191
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 192 CIFAEMVTRRALF 204

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 10  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 63
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 64  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 120 HSH-RVLHRDLKPQNLLI 136

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 132 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 191
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 192 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 234
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 235 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 286
Query: 465 IN 466
Sbjct: 287 FQ 288

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 10  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 63
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 64  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 120 HSH-RVLHRDLKPQNLLI 136

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 132 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 191
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 192 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 234
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 235 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 286
Query: 465 IN 466
Sbjct: 287 FQ 288

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 10  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 63
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 64  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 120 HSH-RVLHRDLKPQNLLI 136

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 132 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 191
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 192 CIFAEMVTRRALF 204

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 10  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 63
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 64  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 120 HSH-RVLHRDLKPQNLLI 136

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 132 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 191
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 192 CIFAEMVTRRALF 204

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 9   KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 62
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 63  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 119 HSH-RVLHRDLKPQNLLI 135

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 131 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 190
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 191 CIFAEMVTRRALF 203

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 9   KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 62
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 63  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 119 HSH-RVLHRDLKPQNLLI 135

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 131 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 190
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 191 CIFAEMVTRRALF 203

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 10  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 63
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 64  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 120 HSH-RVLHRDLKPQNLLI 136

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 132 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 191
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 192 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 234
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 235 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 286
Query: 465 IN 466
Sbjct: 287 FQ 288

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 9   KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 62
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE++ ++L T +  +   G+PL ++K   F +L GL   
Sbjct: 63  IVKLLDVIH----TENKLYLVFEHVHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 119 HSH-RVLHRDLKPQNLLI 135

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 131 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 190
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 191 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 233
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 234 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 285
Query: 465 IN 466
Sbjct: 286 FQ 287

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 9   KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 62
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 63  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 119 HSH-RVLHRDLKPQNLLI 135

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 131 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 190
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 191 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 233
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 234 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 285
Query: 465 IN 466
Sbjct: 286 FQ 287

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 10  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 63
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 64  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 120 HSH-RVLHRDLKPQNLLI 136

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 132 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 191
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 192 CIFAEMVTRRALF 204

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 9   KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 62
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 63  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 119 HSH-RVLHRDLKPQNLLI 135

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 131 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 190
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 191 CIFAEMVTRRALF 203

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 11  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 64
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 65  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 121 HSH-RVLHRDLKPQNLLI 137

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 133 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 192
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S           
Sbjct: 193 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSM---------- 235
Query: 411 HIRRLRFWPLNKVLIEKY---DFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                   P  K    K+   DFS+       D    L  +L + P KR +A   L HP+
Sbjct: 236 --------PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 287
Query: 465 IN 466
Sbjct: 288 FQ 289

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++D G A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDAGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 13  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 66
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L  +L   +  +   G+PL ++K   F +L GL   
Sbjct: 67  IVKLLDVIH----TENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 123 HSH-RVLHRDLKPQNLLI 139

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 135 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 194
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 195 CIFAEMVTRRALF 207

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DF  A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDFYLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 12  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 65
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L  +L   +  +   G+PL ++K   F +L GL   
Sbjct: 66  IVKLLDVIH----TENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 122 HSH-RVLHRDLKPQNLLI 138

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 134 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 193
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 194 CIFAEMVTRRALF 206

>pdb|2IZR|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With Inhibitor Length = 330

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 35  MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQ 94
           MG       + V  K+G G+F  + L  +  T+ YVA+K++       +  L E +  KQ
Sbjct: 2   MGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHL-EYRFYKQ 60
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           +  GD          +    + GP G++  MV E LG +L  L    D R   L  V  I
Sbjct: 61  LGSGDG---------IPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCD-RTFSLKTVLMI 110
Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
              ++  ++++H + ++I+ D+KPEN L+
Sbjct: 111 AIQLISRMEYVHSK-NLIYRDVKPENFLI 138

>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2 Length = 313

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 21/151 (13%)
Query: 35  MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQ 94
           MG  F+ G+     K+G G+F  + L  +  T+ YVA+K++       +  L E +  KQ
Sbjct: 2   MGPNFRVGK-----KIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHL-EYRFYKQ 55
Query: 95  IA--EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVK 152
           ++  EG P              + GP G++  MV E LG +L  L    D R   L  V 
Sbjct: 56  LSATEGVP-----------QVYYFGPXGKYNAMVLELLGPSLEDLFDLCD-RTFTLKTVL 103
Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENVLL 183
            I   ++  ++++H + S+I+ D+KPEN L+
Sbjct: 104 MIAIQLITRMEYVHTK-SLIYRDVKPENFLV 133

>pdb|4HGL|A Chain A, Crystal Structure Of Ck1g3 With Compound 1 Length = 330

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 17/155 (10%)
Query: 29  GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDE 88
           G   + +G  F+ G+     K+G G+F  + L  +  T+ YVA+K++       +  L E
Sbjct: 1   GSGVLMVGPNFRVGK-----KIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHL-E 54
Query: 89  IKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL 148
            +  KQ+  GD          +    + GP G++  MV E LG +L  L    D R   L
Sbjct: 55  YRFYKQLGSGDG---------IPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCD-RTFSL 104
Query: 149 HMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             V  I   ++  ++++H + ++I+ D+KPEN L+
Sbjct: 105 KTVLMIAIQLISRMEYVHSK-NLIYRDVKPENFLI 138

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++D G A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDRGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 45/194 (23%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++D G A  T  + T  + TR YR PE++L 
Sbjct: 154 SNLAVNEDCE-----------------LKILDGGLARHTDDEMTGYVATRWYRAPEIMLN 196
Query: 338 -SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM----MPRKI 392
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G     + +KI
Sbjct: 197 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELLKKI 250
Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPE 451
           +     +R++      L  + ++ F     V I         AN +A D L  +L    +
Sbjct: 251 S--SESARNYIQ---SLTQMPKMNF---ANVFI--------GANPLAVDLLEKMLVLDSD 294
Query: 452 KRPTAAQCLTHPWI 465
           KR TAAQ L H + 
Sbjct: 295 KRITAAQALAHAYF 308

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVAL---KVQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VAL   ++    +     A+ EI +LK++   +      
Sbjct: 10  KIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPN------ 63
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 64  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 120 HSH-RVLHRDLKPQNLLI 136

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 132 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 191
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 192 CIFAEMVTRRALF 204

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVAL---KVQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VAL   ++    +     A+ EI +LK++   +      
Sbjct: 9   KIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPN------ 62
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 63  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 119 HSH-RVLHRDLKPQNLLI 135

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST  D+WS  
Sbjct: 131 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 190
Query: 351 CICFELATGDVLF 363
           CI  E+ T   LF
Sbjct: 191 CIFAEMVTRRALF 203

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 32/164 (19%)
Query: 320 FTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDVLFDPHSG---------- 368
            T+ + TR YR PE+LLGS KY+   D+WS  CI  E+  G  +F   S           
Sbjct: 187 LTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGV 246
Query: 369 ----DNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL 424
                N D +         ++  +  K+       RD F +  +L     L+  P     
Sbjct: 247 IDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNL----LLKINP----- 297
Query: 425 IEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWINV 467
                  + D N+ A D L  +L F P KR +A   L HP++++
Sbjct: 298 -------KADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSI 334

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 12/175 (6%)
Query: 297 LLAAVDLKCKLVDFG---NACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC 353
           ++   D   K++DFG    AC  +   T  + TR YR PEV+LG  Y+   D+WS  CI 
Sbjct: 157 IVVKSDCTLKILDFGLARTACTNF-MMTPYVVTRYYRAPEVILGMGYAANVDIWSVGCIM 215
Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS-RDFFNRHGDLRHI 412
            EL  G V+F     D+ D+       ++E LG    +     + + R++         I
Sbjct: 216 GELVKGCVIF--QGTDHIDQWNK----VIEQLGTPSAEFMAALQPTVRNYVENRPKYPGI 269
Query: 413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
           +    +P + +   + +  +   +   D L  +L   P+KR +  + L HP+I V
Sbjct: 270 KFEELFP-DWIFPSESERDKIKTSQARDLLSKMLVIDPDKRISVDEALRHPYITV 323

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           K+G G +  V+ A +  T   VALK   +    +     A+ EI +LK++   +      
Sbjct: 13  KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------ 66
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           +VKLLD           + +VFE++ ++L   +  +   G+PL ++K   F +L GL   
Sbjct: 67  IVKLLDVIH----TENKLYLVFEHVDQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 166 HRELSIIHTDLKPENVLL 183
           H    ++H DLKP+N+L+
Sbjct: 123 HSH-RVLHRDLKPQNLLI 139

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 29/179 (16%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFA 350
           + LL   +   KL DFG A       + + +++ T  YR PE+LLG KY ST  D+WS  
Sbjct: 135 QNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 194
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           CI  E+ T   LF    GD+   + D L  +   LG  P ++ + G  S   +       
Sbjct: 195 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLG-TPDEVVWPGVTSMPDYK------ 241
Query: 411 HIRRLRFWPLNKVLIEKYDFSEKDA---NDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
                  W        + DFS+       D    L  +L + P KR +A   L HP+  
Sbjct: 242 --PSFPKW-------ARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQ 291

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 305 CKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGD 360
            K+ DFG A       +QFT++I T  YR PE+LLGS+ YST  D+WS ACI  E+    
Sbjct: 176 LKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKT 235
Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGM 387
            LF        D + D L  + E+LG+
Sbjct: 236 PLFPG------DSEIDQLFKIFEVLGL 256

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 217 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 271 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 217 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 271 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 195 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 254
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 255 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 308
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 309 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 361

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 150 IVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 209
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 210 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 263
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 264 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 316

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 158 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 217
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 218 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 271
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 272 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 324

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 195 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 254
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 255 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 308
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 309 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 361

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 217 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 271 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 217 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 271 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 217 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 271 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T ++ TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDCTLKILDFGLARTAGTSFMMTPEVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+  G VLF    G ++    D    ++E LG   P  +       R +           
Sbjct: 217 EMIKGGVLF---PGTDHI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYS 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + +   A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 271 FEKLFP-DVLFPADSEHNALKASQARDLLSKMLVIDASKRISVDEALQHPYINVW---YD 326
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 327 PSEAEAPPP----KIPDK---QLDERE 346

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 156 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 215
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 216 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 269
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 270 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 322

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 51/207 (24%)
Query: 269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQ 328
           G + ++   SN  +N+DC+                  +++DFG A    ++ T  + TR 
Sbjct: 143 GIIHRDLKPSNVAVNEDCE-----------------LRILDFGLARQADEEMTGYVATRW 185
Query: 329 YRCPEVLLG-SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM 387
           YR PE++L    Y+   D+WS  CI  EL  G  LF    G +Y    D L  +ME++G 
Sbjct: 186 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKALF---PGSDYI---DQLKRIMEVVGT 239
Query: 388 -MPRKIA-FGGRYSRDFFNR-----HGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA- 439
             P  +A     ++R +          DL  I R                    AN +A 
Sbjct: 240 PSPEVLAKISSEHARTYIQSLPPMPQKDLSSIFR-------------------GANPLAI 280
Query: 440 DFLVPILDFVPEKRPTAAQCLTHPWIN 466
           D L  +L    ++R +AA+ L H + +
Sbjct: 281 DLLGRMLVLDSDQRVSAAEALAHAYFS 307

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 158 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 217
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 218 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 271
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 272 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 324

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 34/174 (19%)
Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGD 360
           D + +++DFG A    ++ T  + TR YR PE++L    Y+   D+WS  CI  EL  G 
Sbjct: 167 DSELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGK 226
Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIA-FGGRYSRDFFNR-----HGDLRHIR 413
            LF    G +Y    D L  +ME++G   P  +A     ++R +          DL  I 
Sbjct: 227 ALF---PGSDYI---DQLKRIMEVVGTPSPEVLAKISSEHARTYIQSLPPMPQKDLSSIF 280
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
           R                    AN +A D L  +L    ++R +AA+ L H + +
Sbjct: 281 R-------------------GANPLAIDLLGRMLVLDSDQRVSAAEALAHAYFS 315

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 150 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 209
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 210 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 263
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 264 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 316

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 151 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 210
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 211 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 264
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 265 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 317

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 151 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 210
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 211 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 264
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 265 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 317

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+  G VLF    G ++    D    ++E LG   P  +       R +           
Sbjct: 217 EMIKGGVLF---PGTDHI---DQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYS 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 271 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV---WYD 326
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 327 PSEAEAPPP----KIPDK---QLDERE 346

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++         + 
Sbjct: 217 EMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLT 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
             + +P + +     + ++  A+   D L  +L   P KR +    L HP+INV
Sbjct: 271 FPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+  G VLF    G ++    D    ++E LG   P  +       R +           
Sbjct: 217 EMIKGGVLF---PGTDHI---DQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYS 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 271 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV---WYD 326
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 327 PSEAEAPPP----KIPDK---QLDERE 346

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 297 LLAAVDLKCKLVDFGNACWTYKQF--TNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A      F  T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 155 IVVKSDCTLKILDFGLARTASTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 214
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS-RDFFNRHGDLRHIR 413
           EL  G V+F     D+ D+       ++E LG    +     + + R++         I 
Sbjct: 215 ELVKGSVIF--QGTDHIDQWNK----VIEQLGTPSAEFMAALQPTVRNYVENRPAYPGIA 268
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
               +P + +   + +  +   +   D L  +L   P+KR +  + L HP+I V
Sbjct: 269 FEELFP-DWIFPSESERDKIKTSQARDLLSKMLVIDPDKRISVDEALRHPYITV 321

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 34/174 (19%)
Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGD 360
           D + +++DFG A    ++ T  + TR YR PE++L    Y+   D+WS  CI  EL  G 
Sbjct: 167 DSELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGK 226
Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIA-FGGRYSRDFFNR-----HGDLRHIR 413
            LF    G +Y    D L  +ME++G   P  +A     ++R +          DL  I 
Sbjct: 227 ALF---PGSDYI---DQLKRIMEVVGTPSPEVLAKISSEHARTYIQSLPPMPQKDLSSIF 280
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
           R                    AN +A D L  +L    ++R +AA+ L H + +
Sbjct: 281 R-------------------GANPLAIDLLGRMLVLDSDQRVSAAEALAHAYFS 315

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 17/145 (11%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGD 99
           +Y    K+G G +  V+   +  T   VA+K    ++      + AL EI++LKQ+   +
Sbjct: 4   KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPN 63
Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLL-TLIKYADYRGVPLHMVKEICFHI 158
                 +V LL+ F+      + + +VFEY    +L  L +Y   RGVP H+VK I +  
Sbjct: 64  ------LVNLLEVFRRK----RRLHLVFEYCDHTVLHELDRYQ--RGVPEHLVKSITWQT 111
Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
           L  ++  H+  + IH D+KPEN+L+
Sbjct: 112 LQAVNFCHKH-NCIHRDVKPENILI 135

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFELATGDV 361
           KL DFG A         + +++ TR YR PE+L+G ++Y  P D+W+  C+  EL +G  
Sbjct: 142 KLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVP 201
Query: 362 LFDPHSGDNYDRDEDHLALMMELLG-MMPR 390
           L+   S      D D L L+ + LG ++PR
Sbjct: 202 LWPGKS------DVDQLYLIRKTLGDLIPR 225

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+  G VLF    G ++    D    ++E LG   P  +       R +           
Sbjct: 217 EMIKGGVLF---PGTDHI---DQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYS 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 271 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV---WYD 326
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 327 PSEAEAPPP----KIPDK---QLDERE 346

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+  G VLF    G ++    D    ++E LG   P  +       R +           
Sbjct: 217 EMIKGGVLF---PGTDHI---DQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYS 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 271 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV---WYD 326
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 327 PSEAEAPPP----KIPDK---QLDERE 346

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 158 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 217
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+  G VLF    G ++    D    ++E LG   P  +       R +           
Sbjct: 218 EMIKGGVLF---PGTDHI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYS 271
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 272 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV---WYD 327
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 328 PSEAEAPPP----KIPDK---QLDERE 347

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+  G VLF    G ++    D    ++E LG   P  +       R +           
Sbjct: 217 EMIKGGVLF---PGTDHI---DQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYS 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 271 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV---WYD 326
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 327 PSEAEAPPP----KIPDK---QLDERE 346

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+  G VLF    G ++    D    ++E LG   P  +       R +           
Sbjct: 217 EMIKGGVLF---PGTDHI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYS 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 271 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV---WYD 326
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 327 PSEAEAPPP----KIPDK---QLDERE 346

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    DLWS  CI  
Sbjct: 162 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIMG 221
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R +           
Sbjct: 222 EMVCHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYS 275
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 276 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW---YD 331
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 332 PSEAEAPPP----KIPDK---QLDERE 351

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 10/96 (10%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   + + K+ DFG A       +++T++I T  YR P+VL+GSK YST  D+WS  
Sbjct: 129 QNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVG 188
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG 386
           CI  E+  G  LF   S      + D L  +  +LG
Sbjct: 189 CIFAEMVNGTPLFPGVS------EADQLMRIFRILG 218

>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With 2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9- Isopropylpurine (Casp Target) Length = 310

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 46  VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           V  K+G G+F  + L  +  T+ YVA+K++       +  L E +  KQ+          
Sbjct: 4   VGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHL-EYRFYKQLGSAGEG---- 58
Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
               L    + GP G++  MV E LG +L  L    D R   L  V  I   +L  ++++
Sbjct: 59  ----LPQVYYFGPXGKYNAMVLELLGPSLEDLFDLCD-RTFTLKTVLMIAIQLLSRMEYV 113
Query: 166 HRELSIIHTDLKPENVLL 183
           H + ++I+ D+KPEN L+
Sbjct: 114 HSK-NLIYRDVKPENFLI 130

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T    T  + TR YR PEV+LG  Y    DLWS  CI  
Sbjct: 151 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIMG 210
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R +           
Sbjct: 211 EMVCHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYS 264
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 265 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW---YD 320
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 321 PSEAEAPP----PKIPDK---QLDERE 340

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 10/96 (10%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   + + K+ DFG A       +++T+++ T  YR P+VL+GSK YST  D+WS  
Sbjct: 129 QNLLINREGELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVG 188
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG 386
           CI  E+  G  LF   S      + D L  +  +LG
Sbjct: 189 CIFAEMVNGTPLFPGVS------EADQLMRIFRILG 218

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A      F  +  + TR YR PEV+LG  Y    DLWS  CI  
Sbjct: 157 IVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDLWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R +           
Sbjct: 217 EMVCHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYS 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 271 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW---YD 326
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 327 PSEAEAPP----PKIPDK---QLDERE 346

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A    T       + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 159 IVVKSDCTLKILDFGLARTAGTSFMMVPFVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 218
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+  G VLF    G ++    D    ++E LG   P  +       R +           
Sbjct: 219 EMIKGGVLF---PGTDHI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYS 272
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 273 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV---WYD 328
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 329 PSEAEAPPP----KIPDK---QLDERE 348

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 297 LLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSK-YSTPADLWSF 349
           LL       K+ DFG A     +       T  + TR YR PE++L SK Y+   D+WS 
Sbjct: 175 LLINTTCDLKICDFGLARIADPEHDHTGFLTEXVATRWYRAPEIMLNSKGYTKSIDIWSV 234
Query: 350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL 409
            CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   ++
Sbjct: 235 GCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIINM 278
Query: 410 RHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           +    L+  P    +     F + D+  + D L  +L F P KR T  + L HP++
Sbjct: 279 KARNYLQSLPSKTKVAWAKLFPKSDSKAL-DLLDRMLTFNPNKRITVEEALAHPYL 333

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 10/96 (10%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   + + K+ DFG A       +++T+++ T  YR P+VL+GSK YST  D+WS  
Sbjct: 129 QNLLINREGELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVG 188
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG 386
           CI  E+  G  LF   S      + D L  +  +LG
Sbjct: 189 CIFAEMVNGAPLFPGVS------EADQLMRIFRILG 218

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A      F  +  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 157 IVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216
Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-MPRKIAFGGRYSRDFFNRHGDLRHIR 413
           E+    +LF    G +Y    D    ++E LG   P  +       R++           
Sbjct: 217 EMVCHKILF---PGRDYI---DQWNKVIEQLGTPCPAFMKKLQPTVRNYVENRPKYAGYS 270
Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
             + +P + +     + ++  A+   D L  +L     KR +  + L HP+INV     +
Sbjct: 271 FEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW---YD 326
Query: 474 PSMAATQPQDTGGSISDKNRREKDERE 500
           PS A   P      I DK   + DERE
Sbjct: 327 PSEAEAPP----PKIPDK---QLDERE 346

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSK 339
           I++D K PS      ++   D   K++DFG A    T    T  + TR YR PEV+LG  
Sbjct: 148 IHRDLK-PSN-----IVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG 201
Query: 340 YSTPADLWSFACICFELATGDVLF 363
           Y    D+WS   I  E+  G VLF
Sbjct: 202 YKENVDIWSVGVIMGEMIKGGVLF 225

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSK 339
           I++D K PS      ++   D   K++DFG A    T    T  + TR YR PEV+LG  
Sbjct: 148 IHRDLK-PSN-----IVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG 201
Query: 340 YSTPADLWSFACICFELATGDVLF 363
           Y    D+WS   I  E+  G VLF
Sbjct: 202 YKENVDIWSVGVIMGEMIKGGVLF 225

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 37/179 (20%)
Query: 302 DLKCKLVDFGNA-----CWTYK-QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF 354
           DL  K+ DFG A      +++K   +  + T+ YR P +LL  + Y+   D+W+  CI  
Sbjct: 157 DLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFA 216
Query: 355 ELATGDVLF-DPHSGDNYDRDEDHLALM-----MELLGMMPRKIAFGGRYSRDFFNRHGD 408
           E+ TG  LF   H  +      + + ++      ELL ++P  I        D    H  
Sbjct: 217 EMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYI------RNDMTEPHK- 269
Query: 409 LRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
                     PL ++L          + +  DFL  IL F P  R TA + L+HP++++
Sbjct: 270 ----------PLTQLL-------PGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSI 311

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 43/177 (24%)
Query: 306 KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDV 361
           KL DFG A       + + +++ TR YR PE+L+G  KY    D+W+  C+  E+  G+ 
Sbjct: 164 KLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEP 223
Query: 362 LFDPHSGDNYDRDEDHLALMMELLG-MMPRKIAFGGRYSRDFFNRHGDLRHIR------- 413
           LF        D D D L  +M  LG ++PR         ++ FN++     +R       
Sbjct: 224 LFPG------DSDIDQLYHIMMCLGNLIPR--------HQELFNKNPVFAGVRLPEIKER 269
Query: 414 ---RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
                R+  L++V+I   D ++K            L   P+KRP  A+ L H +  +
Sbjct: 270 EPLERRYPKLSEVVI---DLAKK-----------CLHIDPDKRPFCAELLHHDFFQM 312

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 184 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 239
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 240 -----ILGIL-------GSPSQEDLNXIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 287
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 288 -DLLDKMLTFNPHKRIEVEQALAHPYL 313

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAEG 98
           RY  Q  LG G F  V L  D  T    A+KV    Q   +   E+ L E+++LKQ+   
Sbjct: 51  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 107
Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFE-YLGENLL-TLIKYADYRGVPLHMVKEICF 156
              D   ++KL + F+  G    +  +V E Y G  L   +I    +  V       I  
Sbjct: 108 ---DHPNIMKLYEFFEDKG----YFYLVGEVYTGGELFDEIISRKRFSEVD---AARIIR 157
Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            +L G+ ++H+   I+H DLKPEN+LL S
Sbjct: 158 QVLSGITYMHKN-KIVHRDLKPENLLLES 185

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAEG 98
           RY  Q  LG G F  V L  D  T    A+KV    Q   +   E+ L E+++LKQ+   
Sbjct: 50  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 106
Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFE-YLGENLL-TLIKYADYRGVPLHMVKEICF 156
              D   ++KL + F+  G    +  +V E Y G  L   +I    +  V       I  
Sbjct: 107 ---DHPNIMKLYEFFEDKG----YFYLVGEVYTGGELFDEIISRKRFSEVD---AARIIR 156
Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            +L G+ ++H+   I+H DLKPEN+LL S
Sbjct: 157 QVLSGITYMHKN-KIVHRDLKPENLLLES 184

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 184 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 239
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 240 -----ILGIL-------GSPSQEDLNXIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 287
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 288 -DLLDKMLTFNPHKRIEVEQALAHPYL 313

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 186 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 241
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 242 -----ILGIL-------GSPSQEDLNCGINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 289
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 290 -DLLDKMLTFNPHKRIEVEQALAHPYL 315

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 204 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 259
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 260 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 307
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 308 -DLLDKMLTFNPHKRIEVEQALAHPYL 333

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAEG 98
           RY  Q  LG G F  V L  D  T    A+KV    Q   +   E+ L E+++LKQ+   
Sbjct: 27  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 83
Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFE-YLGENLL-TLIKYADYRGVPLHMVKEICF 156
              D   ++KL + F+  G    +  +V E Y G  L   +I    +  V       I  
Sbjct: 84  ---DHPNIMKLYEFFEDKG----YFYLVGEVYTGGELFDEIISRKRFSEVD---AARIIR 133
Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            +L G+ ++H+   I+H DLKPEN+LL S
Sbjct: 134 QVLSGITYMHKN-KIVHRDLKPENLLLES 161

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 23/156 (14%)
Query: 35  MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALD 87
           + D    G Y +   LG G F  V LA+ T T   VALK+       +   Q   E  + 
Sbjct: 6   LADGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREIS 65
Query: 88  EIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVP 147
            +++L+            ++KL D  K    +   + MV EY G  L   I   D   + 
Sbjct: 66  YLRLLRH---------PHIIKLYDVIK----SKDEIIMVIEYAGNELFDYIVQRD--KMS 110
Query: 148 LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
               +     I+  +++ HR   I+H DLKPEN+LL
Sbjct: 111 EQEARRFFQQIISAVEYCHRH-KIVHRDLKPENLLL 145

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 204 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 259
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 260 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 307
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 308 -DLLDKMLTFNPHKRIEVEQALAHPYL 333

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 23/156 (14%)
Query: 35  MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALD 87
           + D    G Y +   LG G F  V LA+ T T   VALK+       +   Q   E  + 
Sbjct: 7   LADGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREIS 66
Query: 88  EIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVP 147
            +++L+            ++KL D  K    +   + MV EY G  L   I   D   + 
Sbjct: 67  YLRLLRH---------PHIIKLYDVIK----SKDEIIMVIEYAGNELFDYIVQRD--KMS 111
Query: 148 LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
               +     I+  +++ HR   I+H DLKPEN+LL
Sbjct: 112 EQEARRFFQQIISAVEYCHRH-KIVHRDLKPENLLL 146

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 23/156 (14%)
Query: 35  MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALD 87
           + D    G Y +   LG G F  V LA+ T T   VALK+       +   Q   E  + 
Sbjct: 1   LADGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREIS 60
Query: 88  EIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVP 147
            +++L+            ++KL D  K    +   + MV EY G  L   I   D   + 
Sbjct: 61  YLRLLRH---------PHIIKLYDVIK----SKDEIIMVIEYAGNELFDYIVQRD--KMS 105
Query: 148 LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
               +     I+  +++ HR   I+H DLKPEN+LL
Sbjct: 106 EQEARRFFQQIISAVEYCHRH-KIVHRDLKPENLLL 140

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 188 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 243
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 244 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 291
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 292 -DLLDKMLTFNPHKRIEVEQALAHPYL 317

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 186 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 241
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 242 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 289
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 290 -DLLDKMLTFNPHKRIEVEQALAHPYL 315

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 188 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 243
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 244 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 291
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 292 -DLLDKMLTFNPHKRIEVEQALAHPYL 317

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 18/152 (11%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALD-EIKILKQIAEGDPD 101
           Y  +  LG G FS V LA D +T   VA+K + K A    E +++ EI +L +I   +  
Sbjct: 20  YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPN-- 77
Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHIL 159
               +V L D ++    +G H+ ++ + +  GE    +++   Y          + F +L
Sbjct: 78  ----IVALDDIYE----SGGHLYLIMQLVSGGELFDRIVEKGFYTE---RDASRLIFQVL 126
Query: 160 VGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
             + +LH +L I+H DLKPEN+L  S+ + SK
Sbjct: 127 DAVKYLH-DLGIVHRDLKPENLLYYSLDEDSK 157

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 184 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 239
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 240 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 287
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 288 -DLLDKMLTFNPHKRIEVEQALAHPYL 313

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 189 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 244
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 245 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 292
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 293 -DLLDKMLTFNPHKRIEVEQALAHPYL 318

>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant Length = 483

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 17/150 (11%)
Query: 34  RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILK 93
           R+G+ F+ GR     K+G G F  ++L  + QT+  VA+K++     + +  L E KI +
Sbjct: 4   RVGNKFRLGR-----KIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQ-LLYESKIYR 57
Query: 94  QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKE 153
            +  G           + + +  G  G +  +V + LG +L  L  +   R + L  V  
Sbjct: 58  ILQGGTG---------IPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCS-RKLSLKTVLM 107
Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           +   ++  ++ +H + S +H D+KP+N L+
Sbjct: 108 LADQMINRVEFVHSK-SFLHRDIKPDNFLM 136

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 190 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 245
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 246 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 293
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 294 -DLLDKMLTFNPHKRIEVEQALAHPYL 319

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 181 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 236
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 237 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 284
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 285 -DLLDKMLTFNPHKRIEVEQALAHPYL 310

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 188 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 243
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 244 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 291
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 292 -DLLDKMLTFNPHKRIEVEQALAHPYL 317

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 184 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 239
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 240 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 287
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 288 -DLLDKMLTFNPHKRIEVEQALAHPYL 313

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 186 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 241
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 242 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 289
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 290 -DLLDKMLTFNPHKRIEVEQALAHPYL 315

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 192 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 247
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 248 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 295
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 296 -DLLDKMLTFNPHKRIEVEQALAHPYL 321

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 184 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 239
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 240 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 287
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 288 -DLLDKMLTFNPHKRIEVEQALAHPYL 313

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 182 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 237
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 238 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 285
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 286 -DLLDKMLTFNPHKRIEVEQALAHPYL 311

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 188 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 243
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 244 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 291
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 292 -DLLDKMLTFNPHKRIEVEQALAHPYL 317

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H 
Sbjct: 188 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNH- 243
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
                +LG++       G  S++  N   +L+    L   P    +     F   D+  +
Sbjct: 244 -----ILGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL 291
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 292 -DLLDKMLTFNPHKRIEVEQALAHPYL 317

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 18/152 (11%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALD-EIKILKQIAEGDPD 101
           Y  +  LG G FS V LA D +T   VA+K + K A    E +++ EI +L +I   +  
Sbjct: 20  YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPN-- 77
Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHIL 159
               +V L D ++    +G H+ ++ + +  GE    +++   Y          + F +L
Sbjct: 78  ----IVALDDIYE----SGGHLYLIMQLVSGGELFDRIVEKGFYTE---RDASRLIFQVL 126
Query: 160 VGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
             + +LH +L I+H DLKPEN+L  S+ + SK
Sbjct: 127 DAVKYLH-DLGIVHRDLKPENLLYYSLDEDSK 157

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 78/206 (37%), Gaps = 50/206 (24%)
Query: 307 LVDFGNACWTYKQFTNDIQTRQYRCPE-VLLGSKYSTPADLWSFACICFELAT------- 358
           LV F +     +Q T  + TR YR PE +LL   Y+   D+WS  CI  EL         
Sbjct: 227 LVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVA 286
Query: 359 ----------GDVLF----DPHSGDNYDR----DEDHLALMMELLG------MMPRKIAF 394
                     G   F    D  +G+++      + D L ++  +LG      +   +   
Sbjct: 287 YHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKED 346
Query: 395 GGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRP 454
             RY R F  R G                L E++  S  DA      L  +L F P KR 
Sbjct: 347 AKRYIRIFPKREG--------------TDLAERFPASSADA---IHLLKRMLVFNPNKRI 389
Query: 455 TAAQCLTHPWINVGPRLLEPSMAATQ 480
           T  +CL HP+     R+ E    AT+
Sbjct: 390 TINECLAHPFFK-EVRIAEVETNATE 414

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 23/149 (15%)
Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILKQ 94
           G Y +   LG G F  V LA+ T T   VALK+       +   Q   E  +  +++L+ 
Sbjct: 4   GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH 63
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
                      ++KL D  K    +   + MV EY G  L   I   D   +     +  
Sbjct: 64  ---------PHIIKLYDVIK----SKDEIIMVIEYAGNELFDYIVQRD--KMSEQEARRF 108
Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
              I+  +++ HR   I+H DLKPEN+LL
Sbjct: 109 FQQIISAVEYCHRH-KIVHRDLKPENLLL 136

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 18/152 (11%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALD-EIKILKQIAEGDPD 101
           Y  +  LG G FS V LA D +T   VA+K + K A    E +++ EI +L +I   +  
Sbjct: 20  YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPN-- 77
Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHIL 159
               +V L D ++    +G H+ ++ + +  GE    +++   Y          + F +L
Sbjct: 78  ----IVALDDIYE----SGGHLYLIMQLVSGGELFDRIVEKGFYTE---RDASRLIFQVL 126
Query: 160 VGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
             + +LH +L I+H DLKPEN+L  S+ + SK
Sbjct: 127 DAVKYLH-DLGIVHRDLKPENLLYYSLDEDSK 157

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 19/146 (13%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
           +Y    K+G G + TV+ A + +T   VALK   +    +    +AL EI +LK++    
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH-- 60
Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEICFH 157
               K +V+L D   HS    + + +VFE+  ++   L KY D     L   +VK   F 
Sbjct: 61  ----KNIVRLHDVL-HS---DKKLTLVFEFCDQD---LKKYFDSCNGDLDPEIVKSFLFQ 109
Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           +L GL   H   +++H DLKP+N+L+
Sbjct: 110 LLKGLGFCHSR-NVLHRDLKPQNLLI 134

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   + + KL +FG A       + ++ ++ T  YR P+VL G+K YST  D+WS  
Sbjct: 130 QNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG 189
Query: 351 CICFELA-TGDVLFDPHSGDNYDRDEDHLALMMELLG 386
           CI  ELA  G  LF    G++ D   D L  +  LLG
Sbjct: 190 CIFAELANAGRPLF---PGNDVD---DQLKRIFRLLG 220

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 19/146 (13%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
           +Y    K+G G + TV+ A + +T   VALK   +    +    +AL EI +LK++    
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKH-- 60
Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEICFH 157
               K +V+L D   HS    + + +VFE+  ++   L KY D     L   +VK   F 
Sbjct: 61  ----KNIVRLHDVL-HS---DKKLTLVFEFCDQD---LKKYFDSCNGDLDPEIVKSFLFQ 109
Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           +L GL   H   +++H DLKP+N+L+
Sbjct: 110 LLKGLGFCHSR-NVLHRDLKPQNLLI 134

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 295 KELLAAVDLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           + LL   + + KL DFG A       + ++ ++ T  YR P+VL G+K YST  D+WS  
Sbjct: 130 QNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG 189
Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG 386
           CI  ELA       P  G++ D   D L  +  LLG
Sbjct: 190 CIFAELANAARPLFP--GNDVD---DQLKRIFRLLG 220

>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum In Complex With Indirubin E804 Length = 383

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPA-DLWSFACIC 353
           L+ + D   KL DFG+A      +     I +R YR PE++LG+   TP+ DLWS  C+ 
Sbjct: 173 LVNSKDNTLKLCDFGSAKKLIPSEPSVAXICSRFYRAPELMLGATEYTPSIDLWSIGCVF 232
Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLG 386
            EL  G  LF   SG+      D L  +++++G
Sbjct: 233 GELILGKPLF---SGET---SIDQLVRIIQIMG 259

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 18/152 (11%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALD-EIKILKQIAEGDPD 101
           Y  +  LG G FS V LA D +T   VA+K + K A    E +++ EI +L +I   +  
Sbjct: 20  YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPN-- 77
Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHIL 159
               +V L D ++    +G H+ ++ + +  GE    +++   Y          + F +L
Sbjct: 78  ----IVALDDIYE----SGGHLYLIMQLVSGGELFDRIVEKGFYTE---RDASRLIFQVL 126
Query: 160 VGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
             + +LH +L I+H DLKPEN+L  S+ + SK
Sbjct: 127 DAVKYLH-DLGIVHRDLKPENLLYYSLDEDSK 157

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPD 101
           G + +   +G G +  V+     +T    A+KV        E    EI +LK+ +     
Sbjct: 24  GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSH---- 79
Query: 102 DKKCVVKLLDHFKHSGPNGQ--HVCMVFEYLGENLLT-LIKYADYRGVPLHMVKEICFHI 158
             + +      F    P G    + +V E+ G   +T LIK      +    +  IC  I
Sbjct: 80  -HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREI 138
Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
           L GL HLH+   +IH D+K +NVLL
Sbjct: 139 LRGLSHLHQH-KVIHRDIKGQNVLL 162

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKL 109
           +G G FS V +    QT    A+K+           +   +  + +      D++ + +L
Sbjct: 69  IGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNG--DRRWITQL 126
Query: 110 LDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHREL 169
             HF     N  ++ M + Y+G +LLTL+     R +P  M +     I++ +D +HR L
Sbjct: 127 --HFAFQDENYLYLVMEY-YVGGDLLTLLSKFGER-IPAEMARFYLAEIVMAIDSVHR-L 181
Query: 170 SIIHTDLKPENVLL 183
             +H D+KP+N+LL
Sbjct: 182 GYVHRDIKPDNILL 195

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 324 IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMM 382
           + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H+    
Sbjct: 192 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNHI---- 244
Query: 383 ELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFL 442
             LG++       G  S++  N   +L+    L   P    +     F   D+  + D L
Sbjct: 245 --LGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLL 294
Query: 443 VPILDFVPEKRPTAAQCLTHPWI 465
             +L F P KR    Q L HP++
Sbjct: 295 DKMLTFNPHKRIEVEQALAHPYL 317

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 324 IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMM 382
           + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    +H+    
Sbjct: 193 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHYLDQLNHI---- 245
Query: 383 ELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFL 442
             LG++       G  S++  N   +L+    L   P    +     F   D+  + D L
Sbjct: 246 --LGIL-------GSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLL 295
Query: 443 VPILDFVPEKRPTAAQCLTHPWI 465
             +L F P KR    Q L HP++
Sbjct: 296 DKMLTFNPHKRIEVEQALAHPYL 318

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 320 FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHL 378
            T  + TR YR PE++L SK Y+   D+WS  CI  E+ +   +F    G +Y    D L
Sbjct: 182 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHY---LDQL 235
Query: 379 ALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDM 438
             ++ +LG  P +       +    N    L H  ++   P N++      F   D+  +
Sbjct: 236 NHILGILG-SPEQEDLNCIINLKARNYLLSLPHKNKV---PWNRL------FPNADSKAL 285
Query: 439 ADFLVPILDFVPEKRPTAAQCLTHPWI 465
            D L  +L F P KR    Q L HP++
Sbjct: 286 -DLLDKMLTFNPHKRIEVEQALAHPYL 311

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 16/147 (10%)
Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDP 100
           N RY +  KLG G  STV+LA DT  +  VA+K         E  L   +  +++     
Sbjct: 10  NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFE--REVHNSSQ 67
Query: 101 DDKKCVVKLLDHFKHSGPNGQHVC--MVFEYLGENLLTLIKYADYRGVPLHMVKEICF-- 156
              + +V ++D       + +  C  +V EY+     TL +Y +  G PL +   I F  
Sbjct: 68  LSHQNIVSMID------VDEEDDCYYLVMEYIEGP--TLSEYIESHG-PLSVDTAINFTN 118
Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            IL G+ H H ++ I+H D+KP+N+L+
Sbjct: 119 QILDGIKHAH-DMRIVHRDIKPQNILI 144

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 16/147 (10%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE----AALDEIKILKQIAEG 98
           RY    KLG G +  V L  D  T    A+K+ K +   T     A LDE+ +LKQ+   
Sbjct: 5   RYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQL--- 61
Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
              D   ++KL + F+       ++ M     GE    +I    +  V   ++ +    +
Sbjct: 62  ---DHPNIMKLYEFFED--KRNYYLVMEVYRGGELFDEIILRQKFSEVDAAVIMK---QV 113
Query: 159 LVGLDHLHRELSIIHTDLKPENVLLMS 185
           L G  +LH+  +I+H DLKPEN+LL S
Sbjct: 114 LSGTTYLHKH-NIVHRDLKPENLLLES 139

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAEG 98
           RY  Q  LG G F  V L  D  T    A+KV    Q   +   E+ L E+++LKQ+   
Sbjct: 33  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 89
Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFE-YLGENLL-TLIKYADYRGVPLHMVKEICF 156
              D   ++KL + F+  G    +  +V E Y G  L   +I    +  V       I  
Sbjct: 90  ---DHPNIMKLYEFFEDKG----YFYLVGEVYTGGELFDEIISRKRFSEVD---AARIIR 139
Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            +L G+ ++H+   I+H DLKPEN+LL S
Sbjct: 140 QVLSGITYMHKN-KIVHRDLKPENLLLES 167

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAEG 98
           RY  Q  LG G F  V L  D  T    A+KV    Q   +   E+ L E+++LKQ+   
Sbjct: 27  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 83
Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFE-YLGENLL-TLIKYADYRGVPLHMVKEICF 156
              D   + KL + F+  G    +  +V E Y G  L   +I    +  V       I  
Sbjct: 84  ---DHPNIXKLYEFFEDKG----YFYLVGEVYTGGELFDEIISRKRFSEVD---AARIIR 133
Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            +L G+ + H+   I+H DLKPEN+LL S
Sbjct: 134 QVLSGITYXHKN-KIVHRDLKPENLLLES 161

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNA---CWTYKQ----FTNDIQTRQYR 330
           S + I++D K PS      LL   + + K+ DFG A   C +  +     T  + TR YR
Sbjct: 177 SAQVIHRDLK-PS-----NLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYR 230
Query: 331 CPEVLLG-SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMP 389
            PE++L   +Y+   DLWS  CI  E+     LF    G NY      L L+M +LG   
Sbjct: 231 APELMLSLHEYTQAIDLWSVGCIFGEMLARRQLF---PGKNYVH---QLQLIMMVLGTPS 284
Query: 390 RKI--AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILD 447
             +  A G    R +       + +      P   V    Y  +++ A  +   L  +L 
Sbjct: 285 PAVIQAVGAERVRAYIQSLPPRQPV------PWETV----YPGADRQALSL---LGRMLR 331
Query: 448 FVPEKRPTAAQCLTHPWI 465
           F P  R +AA  L HP++
Sbjct: 332 FEPSARISAAAALRHPFL 349

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 85/199 (42%), Gaps = 37/199 (18%)
Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNA---CWTYKQ----FTNDIQTRQYR 330
           S + I++D K PS      LL   + + K+ DFG A   C +  +     T  + TR YR
Sbjct: 176 SAQVIHRDLK-PS-----NLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYR 229
Query: 331 CPEVLLG-SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM-M 388
            PE++L   +Y+   DLWS  CI  E+     LF    G NY      L L+M +LG   
Sbjct: 230 APELMLSLHEYTQAIDLWSVGCIFGEMLARRQLF---PGKNYVH---QLQLIMMVLGTPS 283
Query: 389 PRKI-AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK-YDFSEKDANDMADFLVPIL 446
           P  I A G    R +                P   V  E  Y  +++ A  +   L  +L
Sbjct: 284 PAVIQAVGAERVRAYIQ-----------SLPPRQPVPWETVYPGADRQALSL---LGRML 329
Query: 447 DFVPEKRPTAAQCLTHPWI 465
            F P  R +AA  L HP++
Sbjct: 330 RFEPSARISAAAALRHPFL 348

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 12/164 (7%)
Query: 21  GTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH 80
           G E+    G   V + D      Y+++  +G G +  V+LA+D  T   VA+   K    
Sbjct: 10  GRENLYFQGIKNVHVPDN-----YIIKHLIGRGSYGYVYLAYDKNTEKNVAI---KKVNR 61
Query: 81  YTEAALDEIKILKQIAEGDPDDKKCVVKLLDH-FKHSGPNGQHVCMVFEYLGENLLTLIK 139
             E  +D  +IL++I   +      +++L D            + +V E    +L  L K
Sbjct: 62  MFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFK 121
Query: 140 YADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
              +  +    +K I +++L+G + +H E  IIH DLKP N LL
Sbjct: 122 TPIF--LTEEHIKTILYNLLLGENFIH-ESGIIHRDLKPANCLL 162

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 40/174 (22%)
Query: 318 KQFTNDIQTRQYRCPE-VLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDR--- 373
           KQ T+ + TR YR PE +LL   Y+   D+WS  CI  EL     +   H  D  +R   
Sbjct: 206 KQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLN---MLQSHINDPTNRFPL 262
Query: 374 ----------------------DEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH 411
                                 + D L ++  ++G            + D          
Sbjct: 263 FPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTP----------TEDDLKNINKPEV 312
Query: 412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           I+ ++ +P  K +  K  +    ++D  + L  +L F P KR T  Q L HP++
Sbjct: 313 IKYIKLFPHRKPINLKQKYPSI-SDDGINLLESMLKFNPNKRITIDQALDHPYL 365

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 16/147 (10%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE----AALDEIKILKQIAEG 98
           RY    KLG G +  V L  D  T    A+K+ K +   T     A LDE+ +LKQ+   
Sbjct: 22  RYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQL--- 78
Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
              D   ++KL + F+       ++ M     GE    +I    +  V   ++ +    +
Sbjct: 79  ---DHPNIMKLYEFFEDK--RNYYLVMEVYRGGELFDEIILRQKFSEVDAAVIMK---QV 130
Query: 159 LVGLDHLHRELSIIHTDLKPENVLLMS 185
           L G  +LH+  +I+H DLKPEN+LL S
Sbjct: 131 LSGTTYLHKH-NIVHRDLKPENLLLES 156

>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d Length = 296

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 29  GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD- 87
           G   +R+G+ ++ GR     K+G G F  ++L  D      VA+K++     + +  ++ 
Sbjct: 1   GSMELRVGNRYRLGR-----KIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIES 55
Query: 88  EIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVP 147
           +I  + Q   G P  + C           G  G +  MV E LG +L  L  +   R   
Sbjct: 56  KIYKMMQGGVGIPTIRWC-----------GAEGDYNVMVMELLGPSLEDLFNFCS-RKFS 103
Query: 148 LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           L  V  +   ++  ++++H + + IH D+KP+N L+
Sbjct: 104 LKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLM 138

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 47/167 (28%)
Query: 302 DLKCKLVDFG-NACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           D   K++DFG + C+       D I T  Y  PEVL G+ Y    D+WS   I + L +G
Sbjct: 160 DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSG 218
Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              F       Y ++E  +   +E            G+Y+ D                 P
Sbjct: 219 TPPF-------YGKNEYDILKRVE-----------TGKYAFDL----------------P 244
Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             + +          ++D  D +  +L F P  R TA QCL HPWI 
Sbjct: 245 QWRTI----------SDDAKDLIRKMLTFHPSLRITATQCLEHPWIQ 281

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYS 341
           I++D K P+      LL A     K+ DFG AC      TN+  +  +  PEV  GS YS
Sbjct: 128 IHRDLKPPNL-----LLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYS 182
Query: 342 TPADLWSFACICFELATGDVLFDPHSGDNY 371
              D++S+  I +E+ T    FD   G  +
Sbjct: 183 EKCDVFSWGIILWEVITRRKPFDEIGGPAF 212

>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing Residues 1-317 Complex With Bound Tungstate Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 19/152 (12%)
Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD-EIKI 91
           +R+G+ ++ GR     K+G G F  ++L  D      VA+K++     + +  ++ +I  
Sbjct: 3   LRVGNRYRLGR-----KIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYK 57
Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
           + Q   G P  + C           G  G +  MV E LG +L  L  +   R   L  V
Sbjct: 58  MMQGGVGIPTIRWC-----------GAEGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTV 105
Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +   ++  ++++H + + IH D+KP+N L+
Sbjct: 106 LLLADQMISRIEYIHSK-NFIHRDVKPDNFLM 136

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYS 341
           I++D K P+      LL A     K+ DFG AC      TN+  +  +  PEV  GS YS
Sbjct: 127 IHRDLKPPNL-----LLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYS 181
Query: 342 TPADLWSFACICFELATGDVLFDPHSGDNY 371
              D++S+  I +E+ T    FD   G  +
Sbjct: 182 EKCDVFSWGIILWEVITRRKPFDEIGGPAF 211

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 197 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 256
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 257 FPGDSG------VDQLVEIIKVLGTPTRE 279

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 24/152 (15%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD---------EIKILKQ 94
           Y++   LG G    V LA++ +T   VA+K+    +    +A +         EI+ILK+
Sbjct: 12  YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK 71
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKE 153
           +      +  C++K+ + F     + +   +V E + G  L    K    + +     K 
Sbjct: 72  L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFD--KVVGNKRLKEATCKL 118
Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             + +L+ + +LH E  IIH DLKPENVLL S
Sbjct: 119 YFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 149

>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567 Length = 296

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 25/159 (15%)
Query: 29  GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQ----KSAQHYTEA 84
           G   +R+G+ ++ GR     K+G G F  ++L  +  +   VA+K++    K  Q + E+
Sbjct: 1   GSMELRVGNKYRLGR-----KIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIES 55
Query: 85  ALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYR 144
              +   + Q   G P  K C           G  G +  MV E LG +L  L  +   R
Sbjct: 56  KFYK---MMQGGVGIPSIKWC-----------GAEGDYNVMVMELLGPSLEDLFNFCS-R 100
Query: 145 GVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
              L  V  +   ++  ++++H + + IH D+KP+N L+
Sbjct: 101 KFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLM 138

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 175 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 234
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 235 FPGDSG------VDQLVEIIKVLGTPTRE 257

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 23/149 (15%)
Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK------VQKSAQHY-TEAALDEIKILKQ 94
           G Y+++  LG G F  V LA   +T   VALK      ++KS  H   E  +  +K+L+ 
Sbjct: 9   GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRH 68
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
                      ++KL D    + P    + MV EY G  L   I   + + +     +  
Sbjct: 69  ---------PHIIKLYDVI--TTPTD--IVMVIEYAGGELFDYI--VEKKRMTEDEGRRF 113
Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
              I+  +++ HR   I+H DLKPEN+LL
Sbjct: 114 FQQIICAIEYCHRH-KIVHRDLKPENLLL 141

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 47/167 (28%)
Query: 302 DLKCKLVDFG-NACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           D   K++DFG + C+       D I T  Y  PEVL G+ Y    D+WS   I + L +G
Sbjct: 160 DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSG 218
Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              F       Y ++E  +   +E            G+Y+ D                 P
Sbjct: 219 TPPF-------YGKNEYDILKRVE-----------TGKYAFDL----------------P 244
Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             + +          ++D  D +  +L F P  R TA QCL HPWI 
Sbjct: 245 QWRTI----------SDDAKDLIRKMLTFHPSLRITATQCLEHPWIQ 281

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 24/152 (15%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD---------EIKILKQ 94
           Y++   LG G    V LA++ +T   VA+K+    +    +A +         EI+ILK+
Sbjct: 12  YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK 71
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKE 153
           +      +  C++K+ + F     + +   +V E + G  L    K    + +     K 
Sbjct: 72  L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFD--KVVGNKRLKEATCKL 118
Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             + +L+ + +LH E  IIH DLKPENVLL S
Sbjct: 119 YFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 149

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 47/167 (28%)
Query: 302 DLKCKLVDFG-NACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           D   K++DFG + C+       D I T  Y  PEVL G+ Y    D+WS   I + L +G
Sbjct: 160 DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSG 218
Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              F       Y ++E  +   +E            G+Y+ D                 P
Sbjct: 219 TPPF-------YGKNEYDILKRVE-----------TGKYAFDL----------------P 244
Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             + +          ++D  D +  +L F P  R TA QCL HPWI 
Sbjct: 245 QWRTI----------SDDAKDLIRKMLTFHPSLRITATQCLEHPWIQ 281

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 171 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 230
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 231 FPGDSG------VDQLVEIIKVLGTPTRE 253

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 24/152 (15%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD---------EIKILKQ 94
           Y++   LG G    V LA++ +T   VA+K+    +    +A +         EI+ILK+
Sbjct: 11  YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK 70
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKE 153
           +      +  C++K+ + F     + +   +V E + G  L    K    + +     K 
Sbjct: 71  L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFD--KVVGNKRLKEATCKL 117
Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             + +L+ + +LH E  IIH DLKPENVLL S
Sbjct: 118 YFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 148

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 24/152 (15%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD---------EIKILKQ 94
           Y++   LG G    V LA++ +T   VA+K+    +    +A +         EI+ILK+
Sbjct: 18  YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK 77
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKE 153
           +      +  C++K+ + F     + +   +V E + G  L    K    + +     K 
Sbjct: 78  L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFD--KVVGNKRLKEATCKL 124
Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             + +L+ + +LH E  IIH DLKPENVLL S
Sbjct: 125 YFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 155

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 175 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 234
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 235 FPGDSG------VDQLVEIIKVLGTPTRE 257

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 182 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 241
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 242 FPGDSG------VDQLVEIIKVLGTPTRE 264

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 24/152 (15%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD---------EIKILKQ 94
           Y++   LG G    V LA++ +T   VA+K+    +    +A +         EI+ILK+
Sbjct: 12  YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK 71
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKE 153
           +      +  C++K+ + F     + +   +V E + G  L    K    + +     K 
Sbjct: 72  L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFD--KVVGNKRLKEATCKL 118
Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             + +L+ + +LH E  IIH DLKPENVLL S
Sbjct: 119 YFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 149

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 201 KLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 260
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 261 FPGDSG------VDQLVEIIKVLGTPTRE 283

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 199 KLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 258
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 259 FPGDSG------VDQLVEIIKVLGTPTRE 281

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 242 KLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 301
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 302 FPGDSG------VDQLVEIIKVLGTPTRE 324

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 167 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 226
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 227 FPGDSG------VDQLVEIIKVLGTPTRE 249

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 163 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 222
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 223 FPGDSG------VDQLVEIIKVLGTPTRE 245

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 197 KLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 256
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 257 FPGDSG------VDQLVEIIKVLGTPTRE 279

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 164 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 223
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 224 FPGDSG------VDQLVEIIKVLGTPTRE 246

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 163 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 222
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 223 FPGDSG------VDQLVEIIKVLGTPTRE 245

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 163 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 222
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 223 FPGDSG------VDQLVEIIKVLGTPTRE 245

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 191 KLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 250
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 251 FPGDSG------VDQLVEIIKVLGTPTRE 273

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTN--DIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 163 KLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 222
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 223 FPGDSG------VDQLVEIIKVLGTPTRE 245

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 168 KLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 227
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 228 FPGDSG------VDQLVEIIKVLGTPTRE 250

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 176 KLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 235
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 236 FPGDSG------VDQLVEIIKVLGTPTRE 258

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 41  NGRYVVQSK--LGWGHFSTVWLAWDTQTSHYVALKVQKS-AQHYTEAALDEIKILKQIAE 97
           N  Y V     LG G F  V    +T T   +A K+ K+      E   +EI ++ Q+  
Sbjct: 86  NSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQL-- 143
Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMV---KE 153
               D   +++L D F+    +   + +V EY+ G  L   I    Y    L  +   K+
Sbjct: 144 ----DHANLIQLYDAFE----SKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQ 195
Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           IC     G+ H+H ++ I+H DLKPEN+L ++
Sbjct: 196 IC----EGIRHMH-QMYILHLDLKPENILCVN 222

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 163 KLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 222
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 223 FPGDSG------VDQLVEIIKVLGTPTRE 245

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 163 KLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 222
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 223 FPGDSG------VDQLVEIIKVLGTPTRE 245

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 306 KLVDFGNACWTYKQFTND--IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVL 362
           KL DFG+A    +   N   I +R YR PE++ G+  Y++  D+WS  C+  EL  G  +
Sbjct: 163 KLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI 222
Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRK 391
           F   SG       D L  ++++LG   R+
Sbjct: 223 FPGDSG------VDQLVEIIKVLGTPTRE 245

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD---------EIKILKQ 94
           Y++   LG G    V LA++ +T   VA+++    +    +A +         EI+ILK+
Sbjct: 137 YIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKK 196
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           +      +  C++K+ + F     + +   +V E L E      K    + +     K  
Sbjct: 197 L------NHPCIIKIKNFF-----DAEDYYIVLE-LMEGGELFDKVVGNKRLKEATCKLY 244
Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
            + +L+ + +LH E  IIH DLKPENVLL S
Sbjct: 245 FYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 274

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 35/156 (22%)
Query: 321 TNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLA 379
           T  + TR YR PEV+L S KYS   D+WS  CI  EL     +F         RD  H  
Sbjct: 180 TEXVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFP-------GRDYRHQL 232
Query: 380 LMMELLGMMPRKIAFGGRYSRDFFNRHGDLR---------HIRRLRFWPLNKVLIEKYDF 430
           L+  + G++      G  +S +      DLR         +I+ L  +P     +EK  F
Sbjct: 233 LL--IFGII------GTPHSDN------DLRCIESPRAREYIKSLPMYPAAP--LEKM-F 275
Query: 431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
              +   + D L  +L F P KR TA + L HP++ 
Sbjct: 276 PRVNPKGI-DLLQRMLVFDPAKRITAKEALEHPYLQ 310

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGD 99
           N  + +  +LG G F  V+ A + +T    A KV +  ++   E  + EI+IL       
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATC---- 73
Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
             D   +VKLL  + H G     + ++ E+     +  I     RG+    ++ +C  +L
Sbjct: 74  --DHPYIVKLLGAYYHDG----KLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQML 127
Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
             L+ LH +  IIH DLK  NVL+
Sbjct: 128 EALNFLHSK-RIIHRDLKAGNVLM 150

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGD 99
           N  + +  +LG G F  V+ A + +T    A KV +  ++   E  + EI+IL       
Sbjct: 10  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATC---- 65
Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
             D   +VKLL  + H G     + ++ E+     +  I     RG+    ++ +C  +L
Sbjct: 66  --DHPYIVKLLGAYYHDG----KLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQML 119
Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
             L+ LH +  IIH DLK  NVL+
Sbjct: 120 EALNFLHSK-RIIHRDLKAGNVLM 142

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD---------EIKILKQ 94
           Y++   LG G    V LA++ +T   VA+++    +    +A +         EI+ILK+
Sbjct: 151 YIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKK 210
Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           +      +  C++K+ + F     + +   +V E L E      K    + +     K  
Sbjct: 211 L------NHPCIIKIKNFF-----DAEDYYIVLE-LMEGGELFDKVVGNKRLKEATCKLY 258
Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
            + +L+ + +LH E  IIH DLKPENVLL S
Sbjct: 259 FYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 288

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 38/175 (21%)
Query: 36  GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAAL--------- 86
           GD  +  +Y ++ ++G G +  V LA++   + Y A+KV    +   +A           
Sbjct: 7   GDCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGT 66
Query: 87  ------------------DEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFE 128
                              EI ILK++      D   VVKL++      PN  H+ MVFE
Sbjct: 67  RPAPGGCIQPRGPIEQVYQEIAILKKL------DHPNVVKLVEVL--DDPNEDHLYMVFE 118
Query: 129 YLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
            + +    +++    + +     +     ++ G+++LH +  IIH D+KP N+L+
Sbjct: 119 LVNQG--PVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQ-KIIHRDIKPSNLLV 170

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 35/156 (22%)
Query: 321 TNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLA 379
           T  + TR YR PEV+L S KYS   D+WS  CI  EL     +F         RD  H  
Sbjct: 180 TEYVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFP-------GRDYRHQL 232
Query: 380 LMMELLGMMPRKIAFGGRYSRDFFNRHGDLR---------HIRRLRFWPLNKVLIEKYDF 430
           L+  + G++      G  +S +      DLR         +I+ L  +P     +EK  F
Sbjct: 233 LL--IFGII------GTPHSDN------DLRCIESPRAREYIKSLPMYPAAP--LEKM-F 275
Query: 431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
              +   + D L  +L F P KR TA + L HP++ 
Sbjct: 276 PRVNPKGI-DLLQRMLVFDPAKRITAKEALEHPYLQ 310

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEG 98
            +Y   +K+G G F  V+ A   +T   VALK   ++   + +   AL EIKIL+ +   
Sbjct: 18  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 77
Query: 99  DPDDKKCVVKLLDHFK-HSGPNGQ---HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           +      VV L++  +  + P  +    + +VF++   +L  L+     +   L  +K +
Sbjct: 78  N------VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRV 130
Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
              +L GL ++HR   I+H D+K  NVL+
Sbjct: 131 MQMLLNGLYYIHRN-KILHRDMKAANVLI 158

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKI 91
           V +GD  K  +Y    K+G G   TV+ A D  T   VA++ +    Q   E  ++EI +
Sbjct: 13  VSVGDPKK--KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILV 70
Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
           +++    +P+    +V  LD +      G  + +V EYL    LT +       +    +
Sbjct: 71  MRE--NKNPN----IVNYLDSYLV----GDELWVVMEYLAGGSLTDV--VTETCMDEGQI 118
Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +C   L  L+ LH    +IH D+K +N+LL
Sbjct: 119 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 149

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKI 91
           V +GD  K  +Y    K+G G   TV+ A D  T   VA++ +    Q   E  ++EI +
Sbjct: 13  VSVGDPKK--KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILV 70
Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
           +++    +P+    +V  LD +      G  + +V EYL    LT +       +    +
Sbjct: 71  MRE--NKNPN----IVNYLDSYLV----GDELWVVMEYLAGGSLTDV--VTETCMDEGQI 118
Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +C   L  L+ LH    +IH D+K +N+LL
Sbjct: 119 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 149

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKI 91
           V +GD  K  +Y    K+G G   TV+ A D  T   VA++ +    Q   E  ++EI +
Sbjct: 13  VSVGDPKK--KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILV 70
Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
           +++    +P+    +V  LD +      G  + +V EYL    LT +       +    +
Sbjct: 71  MRE--NKNPN----IVNYLDSYLV----GDELWVVMEYLAGGSLTDV--VTETCMDEGQI 118
Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +C   L  L+ LH    +IH D+K +N+LL
Sbjct: 119 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 149

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 50  LGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALD-EIKILKQIAEGDPDDKKCVV 107
           LG G FS V LA +  T    A+K + K A    E++++ EI +L++I   +      +V
Sbjct: 30  LGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHEN------IV 83
Query: 108 KLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR 167
            L D ++   PN  ++ M     GE    +++   Y          +   +L  + +LHR
Sbjct: 84  ALEDIYE--SPNHLYLVMQLVSGGELFDRIVEKGFYTEKD---ASTLIRQVLDAVYYLHR 138
Query: 168 ELSIIHTDLKPENVLLMSMIDPSK 191
            + I+H DLKPEN+L  S  + SK
Sbjct: 139 -MGIVHRDLKPENLLYYSQDEESK 161

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 304 KCKLVDFGNACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      ELA G
Sbjct: 153 EIKLCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVG 209

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKI 91
           V +GD  K  +Y    K+G G   TV+ A D  T   VA++ +    Q   E  ++EI +
Sbjct: 14  VSVGDPKK--KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILV 71
Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
           +++    +P+    +V  LD +      G  + +V EYL    LT +       +    +
Sbjct: 72  MRE--NKNPN----IVNYLDSYLV----GDELWVVMEYLAGGSLTDV--VTETCMDEGQI 119
Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +C   L  L+ LH    +IH D+K +N+LL
Sbjct: 120 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 150

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 35/153 (22%)
Query: 324 IQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMM 382
           + TR YR PEV+L S KYS   D+WS  CI  EL     +F         RD  H  L+ 
Sbjct: 183 VATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFP-------GRDYRHQLLL- 234
Query: 383 ELLGMMPRKIAFGGRYSRDFFNRHGDLR---------HIRRLRFWPLNKVLIEKYDFSEK 433
            + G++      G  +S +      DLR         +I+ L  +P     +EK  F   
Sbjct: 235 -IFGII------GTPHSDN------DLRCIESPRAREYIKSLPMYPAAP--LEKM-FPRV 278
Query: 434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           +   + D L  +L F P KR TA + L HP++ 
Sbjct: 279 NPKGI-DLLQRMLVFDPAKRITAKEALEHPYLQ 310

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 304 KCKLVDFGNACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           + KL DFG +     +  N+ + TR Y  PE L G+ YS  +D+WS      E+A G
Sbjct: 146 EIKLCDFGVSGQLIDEMANEFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 202

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 15/148 (10%)
Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
           +Y   +K+G G F  V+ A   +T   VALK   ++   + +   AL EIKIL+ +   +
Sbjct: 19  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN 78
Query: 100 PDDKKCVVKLLDHFK-HSGPNGQ---HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEIC 155
                 VV L++  +  + P  +    + +VF++   +L  L+     +   L  +K + 
Sbjct: 79  ------VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRVM 131
Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
             +L GL ++HR   I+H D+K  NVL+
Sbjct: 132 QMLLNGLYYIHRN-KILHRDMKAANVLI 158

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEG 98
            +Y   +K+G G F  V+ A   +T   VALK   ++   + +   AL EIKIL+ +   
Sbjct: 18  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 77
Query: 99  DPDDKKCVVKLLDHFK-HSGPNGQ---HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           +      VV L++  +  + P  +    + +VF++   +L  L+     +   L  +K +
Sbjct: 78  N------VVNLIEICRTKASPYNRCKASIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRV 130
Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
              +L GL ++HR   I+H D+K  NVL+
Sbjct: 131 MQMLLNGLYYIHRN-KILHRDMKAANVLI 158

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 40  KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEI-KILKQIAEG 98
           K G Y++   LG G F  V +     T H VA+K+    +     +LD + KI ++I   
Sbjct: 14  KIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQK---IRSLDVVGKIRREIQNL 70
Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRG-VPLHMVKEICFH 157
                  ++KL      S P+   + MV EY+      L  Y    G +     + +   
Sbjct: 71  KLFRHPHIIKLYQVI--STPSD--IFMVMEYVSGG--ELFDYICKNGRLDEKESRRLFQQ 124
Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           IL G+D+ HR + ++H DLKPENVLL
Sbjct: 125 ILSGVDYCHRHM-VVHRDLKPENVLL 149

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEG 98
            +Y   +K+G G F  V+ A   +T   VALK   ++   + +   AL EIKIL+ +   
Sbjct: 17  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 76
Query: 99  DPDDKKCVVKLLDHFK-HSGPNGQ---HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           +      VV L++  +  + P  +    + +VF++   +L  L+     +   L  +K +
Sbjct: 77  N------VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRV 129
Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
              +L GL ++HR   I+H D+K  NVL+
Sbjct: 130 MQMLLNGLYYIHRN-KILHRDMKAANVLI 157

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKI-LKQIAEGDPDD 102
           + +   LG G F  V L        Y A+KV K           EI + LKQ+   +  D
Sbjct: 8   FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKK----------EIVVRLKQVEHTN--D 55
Query: 103 KKCVVKLLDH-----FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICF 156
           ++ ++ ++ H        +  + Q + M+ +Y+ G  L +L++ +  +  P  + K    
Sbjct: 56  ERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAA 113
Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            + + L++LH +  II+ DLKPEN+LL
Sbjct: 114 EVCLALEYLHSK-DIIYRDLKPENILL 139

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGDPDDKKCV 106
           ++G G F  V+   D +T   VA+K+   + A+   E    EI +L Q          C 
Sbjct: 30  RIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQ----------CD 79
Query: 107 VKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLH-MVKEICFHILVGLDH 164
              +  +  S   G  + ++ EYL G + L L++   +    +  M+KE    IL GLD+
Sbjct: 80  SSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKE----ILKGLDY 135
Query: 165 LHRELSIIHTDLKPENVLL 183
           LH E   IH D+K  NVLL
Sbjct: 136 LHSEKK-IHRDIKAANVLL 153

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 123 VCMVFEYLGENLLTLIKYADYRG--VPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN 180
           +CM  E +  +L    K    +G  +P  ++ +I   I+  L+HLH +LS+IH D+KP N
Sbjct: 127 ICM--ELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSN 184
Query: 181 VLLMSM 186
           VL+ ++
Sbjct: 185 VLINAL 190

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD-EIKILKQIAEGDPDD 102
           ++    LG G FS V+L     T    ALK  K +  + +++L+ EI +LK+I   +   
Sbjct: 11  FIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN--- 67
Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHILV 160
              +V L D ++ +     H  +V + +  GE    +++   Y      +V +    +L 
Sbjct: 68  ---IVTLEDIYEST----THYYLVMQLVSGGELFDRILERGVYTEKDASLVIQ---QVLS 117
Query: 161 GLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
            + +LH E  I+H DLKPEN+L ++  + SK
Sbjct: 118 AVKYLH-ENGIVHRDLKPENLLYLTPEENSK 147

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 144 RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM 186
           + +P  ++ +I   I+  L+HLH +LS+IH D+KP NVL+ ++
Sbjct: 131 QTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINAL 173

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 304 KCKLVDFGNACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      E+A G
Sbjct: 205 EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 261

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 46  VQSKLGWGHFSTVWLAWDTQTSHY-VALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKK 104
           ++ KLG G F  VW+A  T   H  VA+K  K      EA L E  ++K +      DK 
Sbjct: 192 LEKKLGAGQFGEVWMA--TYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQH----DK- 244
Query: 105 CVVKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLD 163
            +VKL     H+    + + ++ E++ + +LL  +K  +    PL  + +    I  G+ 
Sbjct: 245 -LVKL-----HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMA 298
Query: 164 HLHRELSIIHTDLKPENVLL 183
            + +  + IH DL+  N+L+
Sbjct: 299 FIEQR-NYIHRDLRAANILV 317

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 304 KCKLVDFGNACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      E+A G
Sbjct: 170 EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 226

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 304 KCKLVDFGNACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      E+A G
Sbjct: 143 EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 46  VQSKLGWGHFSTVWLAWDTQTSHY-VALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKK 104
           ++ KLG G F  VW+A  T   H  VA+K  K      EA L E  ++K +      DK 
Sbjct: 186 LEKKLGAGQFGEVWMA--TYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQH----DK- 238
Query: 105 CVVKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLD 163
            +VKL     H+    + + ++ E++ + +LL  +K  +    PL  + +    I  G+ 
Sbjct: 239 -LVKL-----HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMA 292
Query: 164 HLHRELSIIHTDLKPENVLL 183
            + +  + IH DL+  N+L+
Sbjct: 293 FIEQR-NYIHRDLRAANILV 311

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 14/149 (9%)
Query: 41  NGRYV-VQSKLGWGHFSTVWLAWDTQTSHYVA---LKVQKSAQHYTEAALDEIKILKQIA 96
           +GR++    ++G G F TV+   DT+T+  VA   L+ +K  +   +   +E + LK + 
Sbjct: 24  DGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEXLKGLQ 83
Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLL-TLIKYADYRGVPLHMVKEIC 155
             +      +V+  D ++ +    + + +V E      L T +K   ++   + +++  C
Sbjct: 84  HPN------IVRFYDSWESTVKGKKCIVLVTELXTSGTLKTYLK--RFKVXKIKVLRSWC 135
Query: 156 FHILVGLDHLH-RELSIIHTDLKPENVLL 183
             IL GL  LH R   IIH DLK +N+ +
Sbjct: 136 RQILKGLQFLHTRTPPIIHRDLKCDNIFI 164

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 304 KCKLVDFGNACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
           + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      E+A G   
Sbjct: 162 EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYP 221
Query: 363 FDPHSG 368
               SG
Sbjct: 222 IGSGSG 227

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA---ALDEIKILKQIAEGDPDDKKC 105
           KLG G +  V L  D  T    A+K+ +     T +    L+E+ +LK +      D   
Sbjct: 44  KLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLL------DHPN 97
Query: 106 VVKLLDHFKHSGPNGQHVCMVFE-YLGENLL-TLIKYADYRGVPLHMVKEICFHILVGLD 163
           ++KL D F+    + ++  +V E Y G  L   +I    +  V   +   I   +L G+ 
Sbjct: 98  IMKLYDFFE----DKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAV---IIKQVLSGVT 150
Query: 164 HLHRELSIIHTDLKPENVLLMS 185
           +LH+  +I+H DLKPEN+LL S
Sbjct: 151 YLHKH-NIVHRDLKPENLLLES 171

>pdb|3RGF|A Chain A, Crystal Structure Of Human Cdk8CYCC Length = 405

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 31/222 (13%)
Query: 324 IQTRQYRCPEVLLGSKYSTPA-DLWSFACICFELATGDVLF----------DPHSGDNYD 372
           + T  YR PE+LLG+++ T A D+W+  CI  EL T + +F          +P+  D  D
Sbjct: 196 VVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLD 255
Query: 373 RDEDHLALMM----ELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY 428
           R  + +        E +  MP        + R+ +     ++++ + +  P +K      
Sbjct: 256 RIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAF---- 311
Query: 429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQ-PQDTGGS 487
                        L  +L   P KR T+ Q +  P+    P       A  Q P      
Sbjct: 312 -----------HLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREF 360
Query: 488 ISDKNRREKDEREAMEVRVGNIAIDGVSKPSRDNAAATLRPP 529
           ++++   +K +++  + + GN   +G   P   +++ T  PP
Sbjct: 361 LTEEEPDDKGDKKNQQQQQGNNHTNGTGHPGNQDSSHTQGPP 402

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	530
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	2e-80
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	3e-75
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	1e-78
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	3e-71
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	3e-55
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	3e-44
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	2e-51
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	4e-43
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	1e-50
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	7e-42
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	3e-50
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	9e-40
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	1e-49
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	2e-39
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	5e-23
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-06
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	1e-22
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	6e-16
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-22
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-14
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-22
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	9e-14
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	3e-22
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	4e-15
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	4e-22
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	6e-19
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-21
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-13
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	3e-21
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-15
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	4e-21
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	5e-14
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	4e-21
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	4e-10
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-20
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	9e-18
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	1e-20
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	4e-14
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-20
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-15
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-20
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-15
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-20
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-10
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	4e-20
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	6e-16
3niz_A	311	Rhodanese family protein; structural genomics, str	4e-20
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-14
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	5e-20
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	6e-18
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	6e-20
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-11
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	7e-20
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-09
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	8e-20
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	4e-13
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-19
3o0g_A	292	Cell division protein kinase 5; kinase activator c	5e-16
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-19
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-16
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	2e-19
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	7e-13
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-19
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-10
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	3e-19
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-15
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	3e-19
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	3e-14
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	4e-19
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-16
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-19
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-11
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	5e-19
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	7e-11
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	6e-19
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-18
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	7e-19
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	1e-14
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-18
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-17
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-18
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	8e-12
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-18
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	6e-15
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	3e-18
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-14
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	3e-18
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-11
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-18
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	1e-11
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	4e-18
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	6e-04
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-18
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	9e-07
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	5e-18
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	6e-09
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-17
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-10
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-17
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	7e-11
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-17
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-09
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-17
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-09
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-17
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	4e-09
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-17
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-12
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	6e-17
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	7e-17
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	3e-06
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-16
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-09
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-16
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-07
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-16
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-12
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-16
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-07
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	4e-16
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	6e-08
3rp9_A	458	Mitogen-activated protein kinase; structural genom	4e-16
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-15
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	4e-16
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-07
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-16
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-07
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-16
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-08
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	7e-16
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	4e-05
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	7e-16
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	8e-16
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	2e-07
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	8e-16
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-08
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	1e-15
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	1e-15
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	2e-15
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	2e-15
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	2e-15
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-15
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-06
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	3e-15
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	9e-12
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	4e-15
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-07
3bhy_A	283	Death-associated protein kinase 3; death associate	4e-15
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-08
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	5e-15
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-10
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	5e-15
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-15
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-05
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	5e-15
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	9e-10
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	5e-15
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-10
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	5e-15
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-09
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	7e-15
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	4e-07
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	7e-15
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-07
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-14
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-07
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-14
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	1e-14
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-14
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	4e-04
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-14
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-08
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-14
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-09
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-14
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-11
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-14
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	8e-09
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-14
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-06
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-14
3fme_A	290	Dual specificity mitogen-activated protein kinase;	3e-06
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	3e-14
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	9e-09
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-14
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-08
2dyl_A	318	Dual specificity mitogen-activated protein kinase	6e-14
2dyl_A	318	Dual specificity mitogen-activated protein kinase	6e-07
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	6e-14
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-08
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	7e-14
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-14
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-09
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	8e-14
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-11
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	9e-14
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-08
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-13
3an0_A	340	Dual specificity mitogen-activated protein kinase;	7e-06
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	1e-13
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-09
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-13
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-07
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-13
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	9e-05
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-13
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-10
3ork_A	311	Serine/threonine protein kinase; structural genomi	2e-13
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-13
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-08
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-13
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	8e-08
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	4e-13
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	5e-13
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	6e-13
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	7e-05
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	6e-13
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-05
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	7e-13
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-12
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-12
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-12
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	3e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-12
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-09
3uqc_A	286	Probable conserved transmembrane protein; structur	6e-12
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	6e-12
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-09
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-11
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-05
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-11
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	4e-07
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-11
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-05
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-11
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	5e-09
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-11
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-11
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-07
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-11
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-06
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-11
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	7e-07
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	4e-11
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	5e-11
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	9e-11
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	5e-11
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-05
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	6e-11
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-11
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-09
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	7e-11
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-05
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-10
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-10
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	4e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-10
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-08
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	2e-10
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	5e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-10
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	1e-05
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-10
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	7e-06
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-10
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-07
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	4e-10
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	4e-10
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	7e-06
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	5e-10
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-05
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	6e-10
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	7e-07
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	7e-10
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	7e-10
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-07
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	8e-10
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-08
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	1e-09
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-09
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-09
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	8e-05
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	1e-09
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-09
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	4e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-09
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	3e-09
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	3e-09
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-09
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	5e-04
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-09
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-04
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	5e-09
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-06
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	7e-09
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	8e-09
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	9e-09
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-08
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-08
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	8e-05
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	5e-08
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	7e-08
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-04
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	1e-07
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	8e-04
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	2e-07
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	3e-07
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	3e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	4e-07
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	6e-07
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	6e-07
3soc_A	322	Activin receptor type-2A; structural genomics cons	8e-07
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	8e-07
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	8e-07
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-06
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-06
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-06
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-06
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-06
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-06
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	3e-06
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	3e-06
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	5e-06
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-06
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	6e-06
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-05
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-05
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	5e-05
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-04
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-04
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	5e-04
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	6e-04
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	6e-04
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	9e-04

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score =  255 bits (654), Expect = 2e-80
 Identities = 104/247 (42%), Positives = 139/247 (56%), Gaps = 13/247 (5%)

Query: 17  SEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK 76
            E E   DY +GGYH V++GD F NGRY V  KLGWGHFSTVWL+WD Q   +VA+KV K
Sbjct: 13  DEQEDPNDYCKGGYHLVKIGDLF-NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVK 71

Query: 77  SAQHYTEAALDEIKILKQIAEGDPDD--KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENL 134
           SA+HYTE ALDEI++LK +   DP+D  ++ VV+LLD FK SG NG H+CMVFE LG +L
Sbjct: 72  SAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHL 131

Query: 135 LTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS------MID 188
           L  I  ++Y+G+PL  VK+I   +L GLD+LH +  IIHTD+KPEN+LL         + 
Sbjct: 132 LKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLA 191

Query: 189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQG----CSSNEACEENESDS 244
                 +    P             +        + K A +          AC  ++  +
Sbjct: 192 AEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFT 251

Query: 245 KPSSPDH 251
           +      
Sbjct: 252 EDIQTRQ 258

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score =  242 bits (619), Expect = 3e-75
 Identities = 105/219 (47%), Positives = 145/219 (66%), Gaps = 8/219 (3%)

Query: 248 SPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKL 307
                + +A     S     +GS +     +      +   P  +          LK K+
Sbjct: 186 YIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAE--------KLKVKI 237

Query: 308 VDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHS 367
            D GNACW +K FT DIQTRQYR  EVL+GS Y+TPAD+WS AC+ FELATGD LF+PHS
Sbjct: 238 ADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHS 297

Query: 368 GDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK 427
           G+ Y RDEDH+AL++ELLG +PRK+   G+YS++FF + GDL+HI +L+ W L +VL+EK
Sbjct: 298 GEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEK 357

Query: 428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           Y++S+++A    DFL+P+L+ +PEKR TAA+CL HPW+N
Sbjct: 358 YEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 396

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score =  250 bits (640), Expect = 1e-78
 Identities = 90/176 (51%), Positives = 121/176 (68%), Gaps = 5/176 (2%)

Query: 24  DYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE 83
           DYR GGYH    G+ +K+ RY++  KLGWGHFSTVWLA D   + +VA+K+ +  + YTE
Sbjct: 1   DYRPGGYHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTE 60

Query: 84  AALDEIKILKQIAEGDPDDK-----KCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLI 138
           AA DEIK+L+++ + D   +       ++KLLDHF H GPNG HV MVFE LGENLL LI
Sbjct: 61  AAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALI 120

Query: 139 KYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR 194
           K  ++RG+PL  VK+I   +L+GLD++HR   IIHTD+KPENVL+  +  P    +
Sbjct: 121 KKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQ 176

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score =  231 bits (590), Expect = 3e-71
 Identities = 85/183 (46%), Positives = 119/183 (65%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           K+ D GNACW  + +TN IQTR+YR PEVLLG+ +   AD+WS AC+ FEL TGD LF+P
Sbjct: 178 KIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEP 237

Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI 425
             G +Y +D+DH+A ++ELLG +P  +   G+Y+R FFN  G LR+I +L+FWPL  VL 
Sbjct: 238 DEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLT 297

Query: 426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQDTG 485
           EKY FS+ +A +++DFL P+L   P KR  A   + HPW+     + E  +   +   +G
Sbjct: 298 EKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELYGSG 357

Query: 486 GSI 488
             I
Sbjct: 358 SDI 360

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score =  188 bits (480), Expect = 3e-55
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 6   NGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQ 65
           +      S   +     +D     + + + G    N  ++V  K+G G F  V L     
Sbjct: 2   HHHHHHSSGRENLYFQGDDEI--VHFSWKKGMLL-NNAFLVIRKMGDGTFGRVLLCQHID 58

Query: 66  TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM 125
              Y A+KV ++ + YT +A  E  ILK+I   D ++    VK    F +      H+C+
Sbjct: 59  NKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNI-VKYHGKFMYYD----HMCL 113

Query: 126 VFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +FE LG +L  +I   +Y G  +  +K  C  IL  L++L  ++S+ HTDLKPEN+LL  
Sbjct: 114 IFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR-KMSLTHTDLKPENILLDD 172

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score =  159 bits (403), Expect = 3e-44
 Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 12/199 (6%)

Query: 271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYR 330
           L+ +       I        +  +     +  +K  L+DFG A +      + I TRQYR
Sbjct: 169 LLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIK--LIDFGCATFKSDYHGSIINTRQYR 226

Query: 331 CPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPR 390
            PEV+L   +   +D+WSF C+  EL TG +LF  H  ++     +HLA+M  ++  +P+
Sbjct: 227 APEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH--EHM----EHLAMMESIIQPIPK 280

Query: 391 K-IAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND---MADFLVPIL 446
             +    + +   +    +L+         +N +   K               DFL  IL
Sbjct: 281 NMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSIL 340

Query: 447 DFVPEKRPTAAQCLTHPWI 465
              P  RP+ A+ L H ++
Sbjct: 341 QIDPTLRPSPAELLKHKFL 359

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score =  177 bits (452), Expect = 2e-51
 Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 8/184 (4%)

Query: 29  GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSH-YVALKVQKSAQHYTEAALD 87
            +   + GD   + RY +   LG G F  V    D +    +VA+K+ K+   Y EAA  
Sbjct: 2   MHLICQSGDVL-SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARS 60

Query: 88  EIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVP 147
           EI++L+ +   DP+     V++L+ F+H G    H+C+VFE LG +    IK   +    
Sbjct: 61  EIQVLEHLNTTDPNSTFRCVQMLEWFEHHG----HICIVFELLGLSTYDFIKENGFLPFR 116

Query: 148 LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKD 207
           L  ++++ + I   ++ LH    + HTDLKPEN+L +          K       L   D
Sbjct: 117 LDHIRKMAYQICKSVNFLH-SNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPD 175

Query: 208 -KLV 210
            K+V
Sbjct: 176 IKVV 179

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score =  155 bits (394), Expect = 4e-43
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 8/190 (4%)

Query: 283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYST 342
           +   +  +   +++    ++   K+VDFG+A +  +  +  + TR YR PEV+L   +S 
Sbjct: 154 SDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQ 213

Query: 343 PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDF 402
           P D+WS  CI  E   G  +F  H  D+     +HLA+M  +LG +P+ +    R  + F
Sbjct: 214 PCDVWSIGCILIEYYLGFTVFPTH--DSK----EHLAMMERILGPLPKHMIQKTRKRKYF 267

Query: 403 FNRHGDLRHIRRLR--FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
            +   D               K L E     + +   + D +  +L++ P KR T  + L
Sbjct: 268 HHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREAL 327

Query: 461 THPWINVGPR 470
            HP+ ++  +
Sbjct: 328 KHPFFDLLKK 337

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score =  176 bits (448), Expect = 1e-50
 Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 7/180 (3%)

Query: 29  GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSH-YVALKVQKSAQHYTEAALD 87
           G+   R+GD     RY +   LG G F  V    D       VALK+ ++   Y EAA  
Sbjct: 7   GHLVCRIGDWL-QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARL 65

Query: 88  EIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVP 147
           EI +LK+I E D ++K   V + D F   G    H+C+ FE LG+N    +K  +++  P
Sbjct: 66  EINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQPYP 121

Query: 148 LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKD 207
           L  V+ + + +   L  LH E  + HTDLKPEN+L ++    +            +    
Sbjct: 122 LPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTS 180

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score =  152 bits (386), Expect = 7e-42
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 8/185 (4%)

Query: 283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYST 342
           ++     +  +  E  +  +   ++ DFG+A + ++  T  + TR YR PEV+L   ++ 
Sbjct: 159 SEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQ 218

Query: 343 PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDF 402
           P D+WS  CI FE   G  LF  H  +N     +HL +M ++LG +P  +    R  + F
Sbjct: 219 PCDVWSIGCILFEYYRGFTLFQTH--ENR----EHLVMMEKILGPIPSHMIHRTRKQKYF 272

Query: 403 FNRHGDLRHI--RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
           +                    K L         +   + D +  +L+F P +R T A+ L
Sbjct: 273 YKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEAL 332

Query: 461 THPWI 465
            HP+ 
Sbjct: 333 LHPFF 337

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score =  176 bits (447), Expect = 3e-50
 Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 29  GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDE 88
             + V+ G+ +   RY + S +G G F  V  A+D     +VA+K+ K+ + +   A  E
Sbjct: 42  YDYIVKNGEKW-MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIE 100

Query: 89  IKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL 148
           +++L+ + + D + K  +V L  HF        H+C+VFE L  NL  L++  ++RGV L
Sbjct: 101 VRLLELMNKHDTEMKYYIVHLKRHFMFRN----HLCLVFEMLSYNLYDLLRNTNFRGVSL 156

Query: 149 HMVKEICFHILVGLDHLHR-ELSIIHTDLKPENVLLMS 185
           ++ ++    +   L  L   ELSIIH DLKPEN+LL +
Sbjct: 157 NLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCN 194

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score =  147 bits (373), Expect = 9e-40
 Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 28/182 (15%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           K+VDFG++C   ++    IQ+R YR PEVLLG  Y    D+WS  CI  E+ TG+ LF  
Sbjct: 201 KIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260

Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD----------------- 408
            +        D +  ++E+LG+ P  I      +R FF +  D                 
Sbjct: 261 AN--EV----DQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKP 314

Query: 409 -----LRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHP 463
                L +I  +           +   +  D     D ++ +LD+ P+ R      L H 
Sbjct: 315 PGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHS 374

Query: 464 WI 465
           + 
Sbjct: 375 FF 376

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score =  175 bits (446), Expect = 1e-49
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 6/157 (3%)

Query: 29  GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDE 88
           G +     D     RY V   +G G F  V  A+D +   +VALK+ ++ + +   A +E
Sbjct: 85  GSYVQVPHDHV-AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEE 143

Query: 89  IKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL 148
           I+IL+ + + D D+   V+ +L++F        H+CM FE L  NL  LIK   ++G  L
Sbjct: 144 IRILEHLRKQDKDNTMNVIHMLENFTFRN----HICMTFELLSMNLYELIKKNKFQGFSL 199

Query: 149 HMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
            +V++    IL  LD LH+   IIH DLKPEN+LL  
Sbjct: 200 PLVRKFAHSILQCLDALHK-NRIIHCDLKPENILLKQ 235

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score =  147 bits (374), Expect = 2e-39
 Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 27/179 (15%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           K++DFG++C+ +++    IQ+R YR PEV+LG++Y  P D+WS  CI  EL TG  L   
Sbjct: 242 KVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG 301

Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI------------- 412
                   + D LA M+ELLGM  +K+    + +++F +  G  R+              
Sbjct: 302 ED------EGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLN 355

Query: 413 ------RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                  +LR  P ++           D     DFL   L++ P  R T  Q L HPW+
Sbjct: 356 GGRSRRGKLRGPPESREWGN--ALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWL 412

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 99.0 bits (247), Expect = 5e-23
 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 11/147 (7%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKILKQIAEGD 99
           N  Y+   KLG G FS V L       H+ ALK +    Q   E A  E  + +      
Sbjct: 28  NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLF---- 83

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEY-LGENLLTLIKYADYRGVPL--HMVKEICF 156
             +   +++L+ +            ++  +     L   I+    +G  L    +  +  
Sbjct: 84  --NHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLL 141

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            I  GL+ +H      H DLKP N+LL
Sbjct: 142 GICRGLEAIH-AKGYAHRDLKPTNILL 167

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 27/175 (15%), Positives = 46/175 (26%), Gaps = 60/175 (34%)

Query: 306 KLVDFGNACWTYKQFTNDIQ------------TRQYRCPEVLLGSKY---STPADLWSFA 350
            L+D G+            Q            T  YR PE+     +       D+WS  
Sbjct: 174 VLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLG 233

Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           C+ + +  G+  +D         D   LA+  +L       I    R+S   +       
Sbjct: 234 CVLYAMMFGEGPYD---MVFQKGDSVALAVQNQL------SIPQSPRHSSALWQ------ 278

Query: 411 HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                        L+                   ++   P +RP     L+    
Sbjct: 279 -------------LLNS-----------------MMTVDPHQRPHIPLLLSQLEA 303

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 30/177 (16%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFE 355
           L    D + K++DFG A     + T  + TR YR PEV+L    Y+   D+WS  CI  E
Sbjct: 157 LAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAE 216

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD---LRHI 412
           + TG  LF    G +Y    D L  ++++ G +P           +F  +  D     +I
Sbjct: 217 MLTGKTLF---KGKDY---LDQLTQILKVTG-VP---------GTEFVQKLNDKAAKSYI 260

Query: 413 RRLRFWPLNKVLIEKYDFSEK--DANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
           + L   P       + DF++    A+  A D L  +L+   +KR TAAQ LTHP+  
Sbjct: 261 QSLPQTP-------RKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFE 310

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 18/165 (10%)

Query: 26  RRGGYHAVRMGDT-FK-NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYT 82
           R+ G++   +  T ++    YV  + +G G + +V  A D ++   VA+K + +  Q   
Sbjct: 6   RKKGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEI 65

Query: 83  EA--ALDEIKILKQIAEGDPDDKKCVVKLLDHFK--HSGPNGQHVCMVFEYLGENLLTLI 138
            A  A  E+ +LK +        + V+ LLD F    S  N     +V  ++  +L  ++
Sbjct: 66  FAKRAYRELLLLKHM------QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIM 119

Query: 139 KYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
                +      ++ + + +L GL ++H    ++H DLKP N+ +
Sbjct: 120 G---LKFSEEK-IQYLVYQMLKGLKYIHSA-GVVHRDLKPGNLAV 159

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 30/177 (16%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFE 355
           L    D + K++DFG A     + T  + TR YR PEV+L    Y+   D+WS  CI  E
Sbjct: 159 LAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAE 218

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD---LRHI 412
           + TG  LF    G ++    D L  +M++ G  P           +F  R        ++
Sbjct: 219 MITGKTLF---KGSDH---LDQLKEIMKVTG-TP---------PAEFVQRLQSDEAKNYM 262

Query: 413 RRLRFWPLNKVLIEKYDFSEK--DANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
           + L           K DF+    +A+ +A + L  +L    E+R TA + L HP+  
Sbjct: 263 KGLPELE-------KKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFE 312

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)

Query: 26  RRGGYHAVRMGDTFKN--GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYT 82
            R G++   +  T       Y     +G G +  V  A D +T   VA+K + +  Q   
Sbjct: 7   ARSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSEL 66

Query: 83  EA--ALDEIKILKQIAEGDPDDKKCVVKLLDHFK--HSGPNGQHVCMVFEYLGENLLTLI 138
            A  A  E+++LK +        + V+ LLD F    +  +     +V  ++G +L  L+
Sbjct: 67  FAKRAYRELRLLKHM------RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLM 120

Query: 139 KYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           K+          ++ + + +L GL ++H    IIH DLKP N+ +
Sbjct: 121 KHEKLG--EDR-IQFLVYQMLKGLRYIH-AAGIIHRDLKPGNLAV 161

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 98.3 bits (245), Expect = 2e-22
 Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 37/246 (15%)

Query: 306 KLVDFGNACW------TYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELAT 358
           K+ D G A                + T  YR PE+LLG++ Y+   D+W+  CI  EL T
Sbjct: 172 KIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLT 231

Query: 359 GDVLF---DPHSGDNYDRDEDHLALMMELLGM-----------MPRKIAFGGRYSRDFFN 404
            + +F         +     D L  +  ++G            MP        + R+ + 
Sbjct: 232 SEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYT 291

Query: 405 RHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
               ++++ + +  P +K                   L  +L   P KR T+ Q +  P+
Sbjct: 292 NCSLIKYMEKHKVKPDSKAF---------------HLLQKLLTMDPIKRITSEQAMQDPY 336

Query: 465 INVGPRLLEPSMAATQ-PQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRDNAA 523
               P       A  Q P      ++++   +K +++  + + GN   +G   P   +++
Sbjct: 337 FLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKKNQQQQQGNNHTNGTGHPGNQDSS 396

Query: 524 ATLRPP 529
            T  PP
Sbjct: 397 HTQGPP 402

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 72.1 bits (177), Expect = 9e-14
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 23/165 (13%)

Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAW--DTQTSHYVALKVQKSAQHYTEAALDEIK 90
            R+ D F+        K+G G +  V+ A   D +     ALK  +     + +A  EI 
Sbjct: 16  ERVEDLFE----YEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEG-TGISMSACREIA 70

Query: 91  ILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGV---- 146
           +L+++          V+ L   F         V ++F+Y   +L  +IK+          
Sbjct: 71  LLREL------KHPNVISLQKVFLSHADR--KVWLLFDYAEHDLWHIIKFHRASKANKKP 122

Query: 147 ---PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID 188
              P  MVK + + IL G+ +LH    ++H DLKP N+L+M    
Sbjct: 123 VQLPRGMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEGP 166

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 57/196 (29%), Positives = 83/196 (42%), Gaps = 47/196 (23%)

Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
           SN  +N+DC+                  K++DFG A  T  + T  + TR YR PE++L 
Sbjct: 161 SNLAVNEDCE-----------------LKILDFGLARHTADEMTGYVATRWYRAPEIMLN 203

Query: 338 SK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGG 396
              Y+   D+WS  CI  EL TG  LF    G ++    D L L++ L+G  P       
Sbjct: 204 WMHYNQTVDIWSVGCIMAELLTGRTLF---PGTDH---IDQLKLILRLVG-TP------- 249

Query: 397 RYSRDFFNRHGD---LRHIRRLRFWPLNKVLIEKYDFSEK--DANDMA-DFLVPILDFVP 450
               +   +        +I+ L   P       K +F+     AN +A D L  +L    
Sbjct: 250 --GAELLKKISSESARNYIQSLTQMP-------KMNFANVFIGANPLAVDLLEKMLVLDS 300

Query: 451 EKRPTAAQCLTHPWIN 466
           +KR TAAQ L H +  
Sbjct: 301 DKRITAAQALAHAYFA 316

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 26  RRGGYHAVRMGDT-FK-NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYT 82
            R  ++   +  T ++   RY   S +G G + +V  A+DT+T   VA+K      Q   
Sbjct: 11  ERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSII 70

Query: 83  EA--ALDEIKILKQIAEGDPDDKKCVVKLLDHFK--HSGPNGQHVCMVFEYLGENLLTLI 138
            A     E+++LK +        + V+ LLD F    S      V +V   +G +L  ++
Sbjct: 71  HAKRTYRELRLLKHM------KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIV 124

Query: 139 KYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           K         H V+ + + IL GL ++H    IIH DLKP N+ +  
Sbjct: 125 KCQKLT--DDH-VQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAVNE 167

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 96.1 bits (240), Expect = 4e-22
 Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 34/197 (17%)

Query: 302 DLKC-----------KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADL 346
           D+K            KL DFG A         + +++ TR YR PE+L+G   Y  P D+
Sbjct: 127 DVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDV 186

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           W+  C+  EL +G  L+    G +   D D L L+ + LG +  +       ++ F    
Sbjct: 187 WAIGCVFAELLSGVPLW---PGKS---DVDQLYLIRKTLGDLIPRHQQVFSTNQYF---- 236

Query: 407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
                  ++      + L  K+     + +  A   L   L   P +R T  Q L HP+ 
Sbjct: 237 ----SGVKIPDPEDMEPLELKF----PNISYPALGLLKGCLHMDPTERLTCEQLLHHPYF 288

Query: 466 NVGPRLLEPSMAATQPQ 482
                + + +    +P 
Sbjct: 289 ENIREIEDLAKEHDKPA 305

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 86.5 bits (215), Expect = 6e-19
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 17/145 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA----ALDEIKILKQIAEG 98
           +Y    K+G G +  V+   +  T   VA+K    +          AL EI++LKQ+   
Sbjct: 4   KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLES-EDDPVIKKIALREIRMLKQL--- 59

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
                  +V LL+ F+        + +VFEY    +L  +     RGVP H+VK I +  
Sbjct: 60  ---KHPNLVNLLEVFRRKR----RLHLVFEYCDHTVLHELDRYQ-RGVPEHLVKSITWQT 111

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
           L  ++  H+  + IH D+KPEN+L+
Sbjct: 112 LQAVNFCHKH-NCIHRDVKPENILI 135

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 33/181 (18%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTND------IQTRQYRCPEVLLGSK-YSTPADLWSF 349
            +   DL  K+ DFG A      +++       + T+ YR P +LL    Y+   D+W+ 
Sbjct: 152 FINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAA 211

Query: 350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRK-IAFGGRYSRDFFNRHGD 408
            CI  E+ TG  LF   +G +     + + L++E + ++  +           +      
Sbjct: 212 GCIFAEMLTGKTLF---AGAHE---LEQMQLILESIPVVHEEDRQELLSVIPVY------ 259

Query: 409 LRHIRRLRFWPLNKVLIEKYDFSEK--DANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
              IR     P           ++     +  A DFL  IL F P  R TA + L+HP++
Sbjct: 260 ---IRNDMTEP-------HKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYM 309

Query: 466 N 466
           +
Sbjct: 310 S 310

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 25/154 (16%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYTEA--ALDEIKILKQIAEGD 99
           RY+    LG G    V+ A D      VA+K  K           AL EIKI++++    
Sbjct: 12  RYMDLKPLGCGGNGLVFSAVDNDCDKRVAIK--KIVLTDPQSVKHALREIKIIRRL---- 65

Query: 100 PDDKKCVVKLLDHFKHSGPNG----------QHVCMVFEYLGENLLTLIKYADYRGVPLH 149
             D   +VK+ +    SG               V +V EY+  +L  +++         H
Sbjct: 66  --DHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPLL--EEH 121

Query: 150 MVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +   + +L GL ++H   +++H DLKP N+ +
Sbjct: 122 -ARLFMYQLLRGLKYIHSA-NVLHRDLKPANLFI 153

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 94.8 bits (236), Expect = 3e-21
 Identities = 51/176 (28%), Positives = 70/176 (39%), Gaps = 14/176 (7%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQF--TNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
           ++   D   K++DFG A      F  T  + TR YR PEV+LG  Y    D+WS  CI  
Sbjct: 158 IVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 217

Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRK-IAFGGRYSRDFFNRHGDLRHIR 413
           E+  G VLF    G ++    D    ++E LG    + +       R +           
Sbjct: 218 EMIKGGVLF---PGTDH---IDQWNKVIEQLGTPCPEFMKKLQPTVRTYVEN---RPKYA 268

Query: 414 RLRFWPL-NKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWINV 467
              F  L   VL        K     A D L  +L     KR +  + L HP+INV
Sbjct: 269 GYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV 324

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 24/173 (13%)

Query: 21  GTEDYRRGGYHAVRMGDT-FK-NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKS 77
           G+   R   +++V +GD+ F    RY     +G G    V  A+D      VA+K + + 
Sbjct: 2   GSRSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRP 61

Query: 78  AQHYTEA--ALDEIKILKQIAEGDPDDKKCVVKLLDHFK--HSGPNGQHVCMVFEYLGEN 133
            Q+ T A  A  E+ ++K +      + K ++ LL+ F    S    Q V +V E +  N
Sbjct: 62  FQNQTHAKRAYRELVLMKCV------NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN 115

Query: 134 LLTLIKYADYRGVPL---HMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           L  +I+      + L    M   + + +L G+ HLH    IIH DLKP N+++
Sbjct: 116 LCQVIQ------MELDHERM-SYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVV 160

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 95.3 bits (237), Expect = 4e-21
 Identities = 54/195 (27%), Positives = 72/195 (36%), Gaps = 31/195 (15%)

Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF--TNDIQTRQYRCPEVL 335
           SN  +  DC                   K++DFG A      F  T  + TR YR PEV+
Sbjct: 193 SNIVVKSDCT-----------------LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVI 235

Query: 336 LGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRK-IAF 394
           LG  Y    D+WS  CI  E+    +LF    G +Y    D    ++E LG    + +  
Sbjct: 236 LGMGYKENVDIWSVGCIMGEMVRHKILF---PGRDY---IDQWNKVIEQLGTPCPEFMKK 289

Query: 395 GGRYSRDFFNRHGDLRHIRRLRFWPL-NKVLIEKYDFSEKDANDMA-DFLVPILDFVPEK 452
                R++            L F  L    L        K     A D L  +L   P K
Sbjct: 290 LQPTVRNYVEN---RPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAK 346

Query: 453 RPTAAQCLTHPWINV 467
           R +    L HP+INV
Sbjct: 347 RISVDDALQHPYINV 361

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 73.3 bits (180), Expect = 5e-14
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 18/180 (10%)

Query: 11  DVSDYTSEDEGTEDYRRGGYHAVRMGDT-FK-NGRYVVQSKLGWGHFSTVWLAWDTQTSH 68
           DVS        ++      +++V +GD+ F    RY     +G G    V  A+D     
Sbjct: 29  DVSYIAKHYNMSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDR 88

Query: 69  YVALK-VQKSAQHYTEA--ALDEIKILKQIAEGDPDDKKCVVKLLDHFK--HSGPNGQHV 123
            VA+K + +  Q+ T A  A  E+ ++K +      + K ++ LL+ F    +    Q V
Sbjct: 89  NVAIKKLSRPFQNQTHAKRAYRELVLMKCV------NHKNIISLLNVFTPQKTLEEFQDV 142

Query: 124 CMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
            +V E +  NL  +I+      +    +  + + +L G+ HLH    IIH DLKP N+++
Sbjct: 143 YLVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLH-SAGIIHRDLKPSNIVV 197

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 93.1 bits (232), Expect = 4e-21
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 40  KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIA 96
           K   Y +  ++G G  S V+   + +     A+K    +++     ++  +EI  L ++ 
Sbjct: 26  KGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQ 84

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICF 156
                D   +++L D+        Q++ MV E    +L + +K    + +     K    
Sbjct: 85  --QHSD--KIIRLYDYEITD----QYIYMVMECGNIDLNSWLK--KKKSIDPWERKSYWK 134

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
           ++L  +  +H+   I+H+DLKP N L+
Sbjct: 135 NMLEAVHTIHQH-GIVHSDLKPANFLI 160

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 61/198 (30%)

Query: 301 VDLKCKLVDFGNACWTYKQFTNDIQTRQ-----YRCPEVLLGS-----------KYSTPA 344
           VD   KL+DFG A       T+ ++  Q     Y  PE +              K S  +
Sbjct: 161 VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKS 220

Query: 345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN 404
           D+WS  CI + +  G   F              +   +  L      I            
Sbjct: 221 DVWSLGCILYYMTYGKTPF------------QQIINQISKL----HAIIDPN-------- 256

Query: 405 RHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                                 + +F +    D+ D L   L   P++R +  + L HP+
Sbjct: 257 ---------------------HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPY 295

Query: 465 INVGPRLLEPSMAATQPQ 482
           + +    +      T  +
Sbjct: 296 VQIQTHPVNQMAKGTTEE 313

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 92.3 bits (230), Expect = 1e-20
 Identities = 46/178 (25%), Positives = 70/178 (39%), Gaps = 32/178 (17%)

Query: 302 DLKC-----------KLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADL 346
           D+K            KL DFG A       + + +++ TR YR PE+L+G   Y    D+
Sbjct: 149 DIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDV 208

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           W+  C+  E+  G+ LF    GD+   D D L  +M  LG +  +       +  F    
Sbjct: 209 WAIGCLVTEMFMGEPLF---PGDS---DIDQLYHIMMCLGNLIPRHQELFNKNPVF---- 258

Query: 407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                  RL      + L  +Y    +      D     L   P+KRP  A+ L H +
Sbjct: 259 ----AGVRLPEIKEREPLERRYPKLSEVV---IDLAKKCLHIDPDKRPFCAELLHHDF 309

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 83.4 bits (207), Expect = 9e-18
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 19/169 (11%)

Query: 21  GTEDYRRGGYHAVRMGDTFKNG--RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA 78
           G   +       +   + +     +Y     +G G +  V    +  T   VA+K     
Sbjct: 2   GHHHHHHSSGVDLGTENLYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLE- 60

Query: 79  QHYTEA----ALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENL 134
               +     A+ EIK+LKQ+        + +V LL+  K          +VFE++   +
Sbjct: 61  SDDDKMVKKIAMREIKLLKQL------RHENLVNLLEVCKKKK----RWYLVFEFVDHTI 110

Query: 135 LTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           L  ++     G+   +V++  F I+ G+   H   +IIH D+KPEN+L+
Sbjct: 111 LDDLELFP-NGLDYQVVQKYLFQIINGIGFCHSH-NIIHRDIKPENILV 157

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 92.7 bits (231), Expect = 1e-20
 Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 36/183 (19%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQF------TNDIQTRQYRCPEVLLGSK-YSTPADLWSF 349
           LL       K+ DFG A             T  + TR YR PE++L SK Y+   D+WS 
Sbjct: 159 LLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSV 218

Query: 350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD- 408
            CI  E+ +   +F    G +Y    D L  ++ +LG  P         S++  N   + 
Sbjct: 219 GCILAEMLSNRPIF---PGKHY---LDQLNHILGILGS-P---------SQEDLNCIINL 262

Query: 409 --LRHIRRLRFWPLNKVLIEKYDFSEK--DANDMA-DFLVPILDFVPEKRPTAAQCLTHP 463
               ++  L           K  ++    +A+  A D L  +L F P KR    Q L HP
Sbjct: 263 KARNYLLSLPHKN-------KVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHP 315

Query: 464 WIN 466
           ++ 
Sbjct: 316 YLE 318

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA--ALDEIKILKQIAEGDP 100
           RY   S +G G +  V  A+D      VA+K     +H T     L EIKIL +      
Sbjct: 28  RYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRF----- 82

Query: 101 DDKKCVVKLLDHFKHSGPNG-QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
              + ++ + D  +       + V +V + +  +L  L+K         H +    + IL
Sbjct: 83  -RHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLS--NDH-ICYFLYQIL 138

Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
            GL ++H   +++H DLKP N+LL
Sbjct: 139 RGLKYIHSA-NVLHRDLKPSNLLL 161

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 91.5 bits (228), Expect = 2e-20
 Identities = 55/197 (27%), Positives = 81/197 (41%), Gaps = 29/197 (14%)

Query: 302 DLKC-----------KLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSK-YSTPADL 346
           DLK            KL DFG A         F++++ T  YR P+VL+GS+ YST  D+
Sbjct: 133 DLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDI 192

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           WS  CI  E+ TG  LF    G N   DE+ L L+ +++G  P +  +        +N +
Sbjct: 193 WSCGCILAEMITGKPLF---PGTN---DEEQLKLIFDIMG-TPNESLWPSVTKLPKYNPN 245

Query: 407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
              R  R LR      +     +  + +  D    L   L   P+ R +A Q L HPW  
Sbjct: 246 IQQRPPRDLR----QVLQPHTKEPLDGNLMDFLHGL---LQLNPDMRLSAKQALHHPWFA 298

Query: 467 VGPRLLEPSMAATQPQD 483
                     + +    
Sbjct: 299 EYYHHASMGGSRSHHHH 315

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 27/152 (17%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA-------ALDEIKILKQI 95
           ++    KLG G ++TV+   +  T  YVALK  K      ++       A+ EI ++K++
Sbjct: 6   QFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVK-----LDSEEGTPSTAIREISLMKEL 60

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHM----V 151
                   + +V+L D           + +VFE++  +L   +        P  +    V
Sbjct: 61  ------KHENIVRLYDVIHTEN----KLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLV 110

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           K   + +L GL   H    I+H DLKP+N+L+
Sbjct: 111 KYFQWQLLQGLAFCHEN-KILHRDLKPQNLLI 141

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 91.5 bits (228), Expect = 2e-20
 Identities = 56/206 (27%), Positives = 76/206 (36%), Gaps = 60/206 (29%)

Query: 302 DLKC-----------KLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLW 347
           DLK            KL DFG A   Y      T+ + T  YR PEVLL S Y+TP DLW
Sbjct: 145 DLKPQNILVTSSGQIKLADFGLAR-IYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLW 203

Query: 348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG 407
           S  CI  E+     LF    G +   D D L  +++++G+   +                
Sbjct: 204 SVGCIFAEMFRRKPLF---RGSS---DVDQLGKILDVIGLPGEED--------------- 242

Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILD------------FVPEKRPT 455
                     WP +  L  +  F  K A  +    V  +D            F P KR +
Sbjct: 243 ----------WPRDVAL-PRQAFHSKSAQPIEK-FVTDIDELGKDLLLKCLTFNPAKRIS 290

Query: 456 AAQCLTHPWINVGPRLLEPSMAATQP 481
           A   L+HP+     R  E   +   P
Sbjct: 291 AYSALSHPYFQDLERCKENLDSHLPP 316

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 13/148 (8%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQ-TSHYVALKVQKSAQHYTE----AALDEIKILKQIAE 97
           +Y   +++G G +  V+ A D +    +VALK  +  Q   E    + + E+ +L+ +  
Sbjct: 12  QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVR-VQTGEEGMPLSTIREVAVLRHL-- 68

Query: 98  GDPDDKKCVVKLLD--HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEIC 155
            +  +   VV+L D      +    + + +VFE++ ++L T +      GVP   +K++ 
Sbjct: 69  -ETFEHPNVVRLFDVCTVSRTDRETK-LTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMM 126

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
           F +L GLD LH    ++H DLKP+N+L+
Sbjct: 127 FQLLRGLDFLHSH-RVVHRDLKPQNILV 153

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 91.3 bits (227), Expect = 3e-20
 Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 15/147 (10%)

Query: 40  KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIA 96
           K   Y +  ++G G  S V+   + +     A+K    +++     ++  +EI  L ++ 
Sbjct: 7   KGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQ 65

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICF 156
                DK  +++L D+        Q++ MV E    +L + +K    + +     K    
Sbjct: 66  --QHSDK--IIRLYDYEITD----QYIYMVMECGNIDLNSWLK--KKKSIDPWERKSYWK 115

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
           ++L  +  +H+   I+H+DLKP N L+
Sbjct: 116 NMLEAVHTIHQH-GIVHSDLKPANFLI 141

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 61/198 (30%)

Query: 301 VDLKCKLVDFGNACWTYKQFTNDIQTRQ-----YRCPEVLLGS-----------KYSTPA 344
           VD   KL+DFG A       T+ ++  Q     Y  PE +              K S  +
Sbjct: 142 VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKS 201

Query: 345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN 404
           D+WS  CI + +  G   F              +   +  L      I            
Sbjct: 202 DVWSLGCILYYMTYGKTPF------------QQIINQISKL----HAIIDPN-------- 237

Query: 405 RHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                                 + +F +    D+ D L   L   P++R +  + L HP+
Sbjct: 238 ---------------------HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPY 276

Query: 465 INVGPRLLEPSMAATQPQ 482
           + +    +      T  +
Sbjct: 277 VQIQTHPVNQMAKGTTEE 294

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 90.4 bits (225), Expect = 4e-20
 Identities = 50/223 (22%), Positives = 74/223 (33%), Gaps = 49/223 (21%)

Query: 302 DLKC-----------KLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSK-YSTPADL 346
           DLK            KL DFG A       K + N++ T  YR P++LLGS  YST  D+
Sbjct: 125 DLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDM 184

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG-----MMPRKIAFGGRYSRD 401
           W   CI +E+ATG  LF    G      E+ L  +  +LG       P            
Sbjct: 185 WGVGCIFYEMATGRPLF---PGST---VEEQLHFIFRILGTPTEETWP------------ 226

Query: 402 FFNRHGDLRHIRRLRF--WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQC 459
                      +   +  +     L+      + D  D+   L   L F    R +A   
Sbjct: 227 ---GILSNEEFKTYNYPKYRAEA-LLSHAPRLDSDGADLLTKL---LQFEGRNRISAEDA 279

Query: 460 LTHPWINVGPRLLE--PSMAATQPQDTGGSISDKNRREKDERE 500
           + HP+       +   P   +           + + R      
Sbjct: 280 MKHPFFLSLGERIHKLPDTTSIFALKEIQLQKEASLRSAHHHH 322

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 78.0 bits (193), Expect = 6e-16
 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 22/147 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE----AALDEIKILKQIAEG 98
            Y+   KLG G ++TV+      T + VALK  +    + E     A+ E+ +LK +   
Sbjct: 3   TYIKLDKLGEGTYATVYKGKSKLTDNLVALK--EIRLEHEEGAPCTAIREVSLLKDL--- 57

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHM--VKEICF 156
                  +V L D         + + +VFEYL ++   L +Y D  G  ++M  VK   F
Sbjct: 58  ---KHANIVTLHDII----HTEKSLTLVFEYLDKD---LKQYLDDCGNIINMHNVKLFLF 107

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            +L GL + HR+  ++H DLKP+N+L+
Sbjct: 108 QLLRGLAYCHRQ-KVLHRDLKPQNLLI 133

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 89.9 bits (224), Expect = 4e-20
 Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 38/188 (20%)

Query: 302 DLKC-----------KLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLGSK-YSTPADL 346
           DLK            KL DFG A       + +T+++ T  YR P+VL+GSK YST  D+
Sbjct: 144 DLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDI 203

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           WS  CI  E+ TG  LF    G     D+D L  +  +LG  P    +            
Sbjct: 204 WSIGCIFAEMITGKPLF---PGVT---DDDQLPKIFSILG-TPNPREWPQ---------V 247

Query: 407 GDLRHIRRLRF--WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
            +L   ++  F  +              ++  D+   +   L F P KR +A   + HP+
Sbjct: 248 QELPLWKQRTFQVFEKKP-WSSIIPGFCQEGIDLLSNM---LCFDPNKRISARDAMNHPY 303

Query: 465 I-NVGPRL 471
             ++ P++
Sbjct: 304 FKDLDPQI 311

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 25/167 (14%)

Query: 26  RRGGYHAVRMGDTFKNG---RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYT 82
               +H+    + +  G   +Y    K+G G +  V+ A D+     VALK  +      
Sbjct: 2   HHHHHHSSGRENLYFQGLMEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIR-LDAED 59

Query: 83  E----AALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLI 138
           E     A+ EI +LK++          +V L+D       + + + +VFE++ ++L    
Sbjct: 60  EGIPSTAIREISLLKEL------HHPNIVSLIDVI----HSERCLTLVFEFMEKDL---K 106

Query: 139 KYADYRGVPLHM--VKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           K  D     L    +K   + +L G+ H H+   I+H DLKP+N+L+
Sbjct: 107 KVLDENKTGLQDSQIKIYLYQLLRGVAHCHQH-RILHRDLKPQNLLI 152

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 89.6 bits (223), Expect = 5e-20
 Identities = 48/184 (26%), Positives = 66/184 (35%), Gaps = 50/184 (27%)

Query: 302 DLKC-----------KLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLW 347
           DLK            KL DFG A   Y      T  + T  YR PEVLL S Y+TP D+W
Sbjct: 145 DLKPENILVTSGGTVKLADFGLAR-IYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMW 203

Query: 348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG-----MMPRKIAFGGRYSRDF 402
           S  CI  E+     LF    G++   + D L  + +L+G       P             
Sbjct: 204 SVGCIFAEMFRRKPLF---CGNS---EADQLGKIFDLIGLPPEDDWP------------- 244

Query: 403 FNRHGDLRHIRRLRF--WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
                    + R  F        +       E+    +   +   L F P KR +A + L
Sbjct: 245 -----RDVSLPRGAFPPRGPRP-VQSVVPEMEESGAQLLLEM---LTFNPHKRISAFRAL 295

Query: 461 THPW 464
            H +
Sbjct: 296 QHSY 299

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 83.4 bits (207), Expect = 6e-18
 Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 13/149 (8%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA-------ALDEIKILKQI 95
           RY   +++G G + TV+ A D  + H+VALK  +   +            + E+ +L+++
Sbjct: 10  RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVR-VPNGGGGGGGLPISTVREVALLRRL 68

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQH-VCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
              +  +   VV+L+D    S  + +  V +VFE++ ++L T +  A   G+P   +K++
Sbjct: 69  ---EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDL 125

Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
               L GLD LH    I+H DLKPEN+L+
Sbjct: 126 MRQFLRGLDFLHAN-CIVHRDLKPENILV 153

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 89.8 bits (223), Expect = 6e-20
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 13/154 (8%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEG 98
           N  +++   LG G  + V+     +T    A+KV    S     +  + E ++LK++   
Sbjct: 8   NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL--- 64

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICF 156
              + K +VKL           +H  ++ E+   G     L + ++  G+P      +  
Sbjct: 65  ---NHKNIVKLFAIE--EETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLR 119

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS 190
            ++ G++HL  E  I+H ++KP N++ +   D  
Sbjct: 120 DVVGGMNHLR-ENGIVHRNIKPGNIMRVIGEDGQ 152

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 36/178 (20%), Positives = 55/178 (30%), Gaps = 37/178 (20%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQ------TRQYRCPEVLLGS--------KYSTPADLW 347
               KL DFG A    ++  +D Q      T +Y  P++   +        KY    DLW
Sbjct: 152 QSVYKLTDFGAA----RELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLW 207

Query: 348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG 407
           S     +  ATG + F P  G   ++         E++     KI  G         +  
Sbjct: 208 SIGVTFYHAATGSLPFRPFEGPRRNK---------EVM----YKIITGKPSGAISGVQKA 254

Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           +   I      P++         S      +   L  IL+   EK     Q       
Sbjct: 255 ENGPIDWSGDMPVSC------SLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD 306

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 90.7 bits (225), Expect = 7e-20
 Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 13/155 (8%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEG 98
           N  +++   LG G  + V+     +T    A+KV    S     +  + E ++LK++   
Sbjct: 8   NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL--- 64

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICF 156
              + K +VKL           +H  ++ E+   G     L + ++  G+P      +  
Sbjct: 65  ---NHKNIVKLFAIE--EETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLR 119

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
            ++ G++HL  E  I+H ++KP N++ +   D   
Sbjct: 120 DVVGGMNHLR-ENGIVHRNIKPGNIMRVIGEDGQS 153

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 34/177 (19%), Positives = 53/177 (29%), Gaps = 37/177 (20%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQ------TRQYRCPEVLLGS--------KYSTPADLW 347
               KL DFG A    ++  +D Q      T +Y  P++   +        KY    DLW
Sbjct: 152 QSVYKLTDFGAA----RELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLW 207

Query: 348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG 407
           S     +  ATG + F P  G   +++            +M + I   G+ S        
Sbjct: 208 SIGVTFYHAATGSLPFRPFEGPRRNKE------------VMYKIIT--GKPSGAISGVQK 253

Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                        +  +      S      +   L  IL+   EK     Q      
Sbjct: 254 AENGP-----IDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS 305

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 90.0 bits (224), Expect = 8e-20
 Identities = 45/219 (20%), Positives = 78/219 (35%), Gaps = 40/219 (18%)

Query: 302 DLKC-----------KLVDFG-------NACWTYKQFTNDIQTRQYRCPEVLLGSK-YST 342
           D+K            KL DFG              ++TN + T  YR PE+LLG + Y  
Sbjct: 149 DMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGP 208

Query: 343 PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDF 402
           P DLW   CI  E+ T   +     G+    ++  LAL+ +L G            + + 
Sbjct: 209 PIDLWGAGCIMAEMWTRSPIM---QGNT---EQHQLALISQLCGS-I---------TPEV 252

Query: 403 FNRHGDLRHIRRLRF--WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
           +    +     +L        K + ++     +D   + D +  +L   P +R  +   L
Sbjct: 253 WPNVDNYELYEKLELVKGQKRK-VKDRLKAYVRDPYAL-DLIDKLLVLDPAQRIDSDDAL 310

Query: 461 THPWINVGPRLLEPS-MAATQPQDTGGSISDKNRREKDE 498
            H +    P   +   M +T        ++   R+    
Sbjct: 311 NHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKHHHH 349

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 23/152 (15%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-----VQKSAQHYTEAALDEIKILKQIAE 97
           +Y   +K+G G F  V+ A   +T   VALK      +K     T  AL EIKIL+ +  
Sbjct: 18  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPIT--ALREIKILQLL-- 73

Query: 98  GDPDDKKCVVKLLD--HFKHSGPNGQHVC--MVFEYLGENLLTLIKYADYRGVPLHM--V 151
                 + VV L++    K S  N       +VF++  E+ L          V   +  +
Sbjct: 74  ----KHENVVNLIEICRTKASPYNRCKGSIYLVFDFC-EHDLA--GLLSNVLVKFTLSEI 126

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           K +   +L GL ++HR   I+H D+K  NVL+
Sbjct: 127 KRVMQMLLNGLYYIHRN-KILHRDMKAANVLI 157

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 88.3 bits (220), Expect = 1e-19
 Identities = 48/179 (26%), Positives = 72/179 (40%), Gaps = 35/179 (19%)

Query: 302 DLKC-----------KLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSK-YSTPADL 346
           DLK            KL +FG A       + ++ ++ T  YR P+VL G+K YST  D+
Sbjct: 126 DLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDM 185

Query: 347 WSFACICFELATGDV-LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR 405
           WS  CI  ELA     LF    G++    +D L  +  LLG  P         + + +  
Sbjct: 186 WSAGCIFAELANAGRPLF---PGND---VDDQLKRIFRLLG-TP---------TEEQWPS 229

Query: 406 HGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
              L   +    +P    L+           D+   L   L   P +R +A + L HP+
Sbjct: 230 MTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNL---LKCNPVQRISAEEALQHPY 285

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 77.6 bits (192), Expect = 5e-16
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 21/147 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE----AALDEIKILKQIAEG 98
           +Y    K+G G + TV+ A + +T   VALK  +      E    +AL EI +LK++   
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRL-DDDDEGVPSSALREICLLKEL--- 58

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHM--VKEICF 156
                K +V+L D       + + + +VFE+  ++   L KY D     L    VK   F
Sbjct: 59  ---KHKNIVRLHDVL----HSDKKLTLVFEFCDQD---LKKYFDSCNGDLDPEIVKSFLF 108

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            +L GL   H   +++H DLKP+N+L+
Sbjct: 109 QLLKGLGFCHSR-NVLHRDLKPQNLLI 134

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 89.2 bits (222), Expect = 1e-19
 Identities = 50/218 (22%), Positives = 71/218 (32%), Gaps = 48/218 (22%)

Query: 302 DLKC-----------KLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSK-YSTPADL 346
           DLK            KL DFG A       + +T+ + TR YR PE+L G++ Y    D+
Sbjct: 137 DLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDM 196

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG-----MMPRKIAFGGRYSRD 401
           W+  CI  EL           GD+   D D L  + E LG       P            
Sbjct: 197 WAVGCILAELLLRVPFL---PGDS---DLDQLTRIFETLGTPTEEQWP------------ 238

Query: 402 FFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT 461
                  L      + +P    L   +  +  D  D+   L     F P  R TA Q L 
Sbjct: 239 ---DMCSLPDYVTFKSFPGIP-LHHIFSAAGDDLLDLIQGL---FLFNPCARITATQALK 291

Query: 462 HPWINVGPRLLEPSMAATQPQDTGGSISDKNRREKDER 499
             + +  P           P+      + K +      
Sbjct: 292 MKYFSNRPGPTPGCQL---PRPNCPVETLKEQSNPALA 326

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 79.9 bits (198), Expect = 1e-16
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 22/149 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA------ALDEIKILKQIA 96
           RY     LG G F+TV+ A D  T+  VA+K  K              AL EIK+L+++ 
Sbjct: 11  RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL- 69

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEI 154
                    ++ LLD F     N   + +VF+++  +L           + L    +K  
Sbjct: 70  -----SHPNIIGLLDAF-GHKSN---ISLVFDFMETDLE---VIIKDNSLVLTPSHIKAY 117

Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
               L GL++LH+   I+H DLKP N+LL
Sbjct: 118 MLMTLQGLEYLHQH-WILHRDLKPNNLLL 145

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 25/176 (14%)

Query: 297 LLAAVDLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACIC 353
           +L A +    + DF  A         T+ +  R YR PE+++  K ++   D+WS  C+ 
Sbjct: 165 ILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVM 224

Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR 413
            E+     LF    G  +    + L  ++E++G  P           +            
Sbjct: 225 AEMFNRKALF---RGSTF---YNQLNKIVEVVGT-P---------KIEDVVMFSSPSARD 268

Query: 414 RLRFWPLNKVLIEKYDFSEK--DANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
            LR    N        ++     A+ +A D +  +L+F P++R +  Q L HP+  
Sbjct: 269 YLRNSLSNV---PARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFE 321

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 26  RRGGYHAVRM-GDTFK-NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---------- 73
            +G      +  +       Y VQ  +  G +  V    D+     VA+K          
Sbjct: 4   AKGEAAMRDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGR 62

Query: 74  VQKSAQHYTEA--ALDEIKILKQIAEGDPDDKKCVVKLLDHFKH-SGPNGQHVCMVFEYL 130
                         L EI++L             ++ L D F H   P    + +V E +
Sbjct: 63  TVNILSDSFLCKRVLREIRLLNHF------HHPNILGLRDIFVHFEEPAMHKLYLVTELM 116

Query: 131 GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +L  +I        P H ++   +HIL+GL  LH E  ++H DL P N+LL
Sbjct: 117 RTDLAQVIHDQRIVISPQH-IQYFMYHILLGLHVLH-EAGVVHRDLHPGNILL 167

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 88.7 bits (220), Expect = 3e-19
 Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 15/147 (10%)

Query: 40  KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIA 96
           K   Y +  ++G G  S V+   + +     A+K    +++     ++  +EI  L ++ 
Sbjct: 54  KGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQ 112

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICF 156
                DK  +++L D+        Q++ MV E    +L + +K    + +     K    
Sbjct: 113 --QHSDK--IIRLYDYEI----TDQYIYMVMECGNIDLNSWLK--KKKSIDPWERKSYWK 162

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
           ++L  +  +H+   I+H+DLKP N L+
Sbjct: 163 NMLEAVHTIHQH-GIVHSDLKPANFLI 188

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 40/225 (17%), Positives = 65/225 (28%), Gaps = 82/225 (36%)

Query: 295 KELLAAV-----------DLKC----------KLVDFGNACWTYKQFTNDIQTRQ----- 328
           K +L AV           DLK           KL+DFG A       T+ ++  Q     
Sbjct: 162 KNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVN 221

Query: 329 YRCPEVLLGS-----------KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDH 377
           Y  PE +              K S  +D+WS  CI + +  G   F              
Sbjct: 222 YMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF------------QQ 269

Query: 378 LALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND 437
           +   +  L      I                                  + +F +    D
Sbjct: 270 IINQISKL----HAIIDPN-----------------------------HEIEFPDIPEKD 296

Query: 438 MADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQ 482
           + D L   L   P++R +  + L HP++ +    +      T  +
Sbjct: 297 LQDVLKCCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAKGTTEE 341

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 31/168 (18%)

Query: 306 KLVDFGNACWTYKQFTND------IQTRQYRCPEVLLGSK-YSTPADLWSFACICFELAT 358
           KL DFG+A    K+ +        I +R YR PE++ G++ Y+T  D+WS  CI  E+  
Sbjct: 172 KLCDFGSA----KKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMML 227

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKI--AFGGRYSRDFFNRHGDLRHIRRLR 416
           G+ +F    GDN       L  ++ +LG   R++       ++                +
Sbjct: 228 GEPIF---RGDNS---AGQLHEIVRVLGCPSREVLRKLNPSHTDVDL---------YNSK 272

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
             P + V  +      K+A    D L  +L ++PE+R    + L HP+
Sbjct: 273 GIPWSNVFSDHSLKDAKEA---YDLLSALLQYLPEERMKPYEALCHPY 317

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 16/149 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA--ALDEIKILKQIAEGDP 100
           R+ V+   G G F TV L  +  T   VA+K  K  Q        L  ++ L  +     
Sbjct: 24  RFQVERMAGQGTFGTVQLGKEKSTGMSVAIK--KVIQDPRFRNRELQIMQDLAVL----- 76

Query: 101 DDKKCVVKLLDHFKHSGPNGQH---VCMVFEYLGENLLTLIKYADYRG--VPLHMVKEIC 155
                +V+L  +F   G   +    + +V EY+ + L    +    R    P  ++K   
Sbjct: 77  -HHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFL 135

Query: 156 FHILVGLDHLHRE-LSIIHTDLKPENVLL 183
           F ++  +  LH   +++ H D+KP NVL+
Sbjct: 136 FQLIRSIGCLHLPSVNVCHRDIKPHNVLV 164

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 52/206 (25%), Positives = 73/206 (35%), Gaps = 53/206 (25%)

Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQ------------ 325
           SN  IN +C               DLK  + DFG A    +   ++ +            
Sbjct: 141 SNLLINSNC---------------DLK--VCDFGLARIIDESAADNSEPTGQQSGMVEFV 183

Query: 326 -TRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMME 383
            TR YR PEV+L S  YS   D+WS  CI  EL     +F    G +Y      L L+  
Sbjct: 184 ATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIF---PGRDYR---HQLLLIFG 237

Query: 384 LLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK--DANDMA-D 440
           ++G                        +I+ L  +P            +     N    D
Sbjct: 238 IIGTPHSDNDL------RCIESPRAREYIKSLPMYP-------AAPLEKMFPRVNPKGID 284

Query: 441 FLVPILDFVPEKRPTAAQCLTHPWIN 466
            L  +L F P KR TA + L HP++ 
Sbjct: 285 LLQRMLVFDPAKRITAKEALEHPYLQ 310

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 19/147 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEA--ALDEIKILKQIAEGDP 100
            + ++S LG G +  V  A    T   VA+K  +       A   L EIKILK       
Sbjct: 12  DFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHF----- 66

Query: 101 DDKKCVVKLLDHFKHSGP-NGQHVCMVFEYLGENLLTLIKYADYRGVPL---HMVKEICF 156
              + ++ + +  +     N   V ++ E +  +L  +I         L   H ++   +
Sbjct: 67  -KHENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVI-----STQMLSDDH-IQYFIY 119

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
             L  +  LH   ++IH DLKP N+L+
Sbjct: 120 QTLRAVKVLH-GSNVIHRDLKPSNLLI 145

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 41/178 (23%)

Query: 301 VDLKC---KLVDFGNACWTYKQF------TNDIQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           +D      KL+DFG+A    K         + I +R YR PE++ G+  Y+T  D+WS  
Sbjct: 174 LDPPSGVLKLIDFGSA----KILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTG 229

Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           C+  EL  G  LF    G++     D L  ++++LG  P         SR+         
Sbjct: 230 CVMAELMQGQPLF---PGESG---IDQLVEIIKVLG-TP---------SREQIKTMNPNY 273

Query: 411 HIRRLRFW---PLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
              +       P +KV   +           A D +  +L++ P  R TA + L HP+
Sbjct: 274 MEHKFPQIRPHPFSKVFRPR-------TPPDAIDLISRLLEYTPSARLTAIEALCHPF 324

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 19/157 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
            Y     +G G F  V+ A   ++   VA+K  K  Q        E++I++ +       
Sbjct: 41  AYTNCKVIGNGSFGVVFQAKLVESDE-VAIK--KVLQD-KRFKNRELQIMRIV------K 90

Query: 103 KKCVVKLLDHFKHSGPNGQHVC--MVFEYLGENLLTLIKYADYRG--VPLHMVKEICFHI 158
              VV L   F  +G     V   +V EY+ E +    ++       +P+ ++K   + +
Sbjct: 91  HPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQL 150

Query: 159 LVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK 195
           L  L ++H  + I H D+KP+N+L    +DP     K
Sbjct: 151 LRSLAYIHS-IGICHRDIKPQNLL----LDPPSGVLK 182

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 86.2 bits (214), Expect = 5e-19
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 18/153 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
            Y V   +G G +              +  K        +   +  + E+ +L+++    
Sbjct: 7   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL---- 62

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPL--HMVKEICF 156
                 +V+  D           + +V EY  G +L ++I         L    V  +  
Sbjct: 63  --KHPNIVRYYDRIID--RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMT 118

Query: 157 HILVGLDHLHRE----LSIIHTDLKPENVLLMS 185
            + + L   HR      +++H DLKP NV L  
Sbjct: 119 QLTLALKECHRRSDGGHTVLHRDLKPANVFLDG 151

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 69/182 (37%)

Query: 302 DLKC-----------KLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLLGSKYSTP 343
           DLK            KL DFG A    +   +D    +       Y  PE +    Y+  
Sbjct: 141 DLKPANVFLDGKQNVKLGDFGLA----RILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEK 196

Query: 344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF 403
           +D+WS  C+ +EL      F                L                       
Sbjct: 197 SDIWSLGCLLYELCALMPPFT---------AFSQKELA---------------------- 225

Query: 404 NRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHP 463
                   IR  +F  +         +S+    ++ + +  +L+     RP+  + L +P
Sbjct: 226 ------GKIREGKFRRIPY------RYSD----ELNEIITRMLNLKDYHRPSVEEILENP 269

Query: 464 WI 465
            I
Sbjct: 270 LI 271

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 15/174 (8%)

Query: 13  SDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVAL 72
              +   E +E  +  GY   R    F+   +   S+LG G +  V+     +     A+
Sbjct: 29  RRVSFRGEASETLQSPGYDPSRPESFFQQ-SFQRLSRLGHGSYGEVFKVRSKEDGRLYAV 87

Query: 73  KVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEY 129
           K   S           L E+   +++         C V+L   ++  G     + +  E 
Sbjct: 88  KRSMSPFRGPKDRARKLAEVGSHEKVG-----QHPCCVRLEQAWEEGG----ILYLQTEL 138

Query: 130 LGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
            G +L    + A    +P   V       L+ L HLH    ++H D+KP N+ L
Sbjct: 139 CGPSLQQHCE-AWGASLPEAQVWGYLRDTLLALAHLH-SQGLVHLDVKPANIFL 190

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 60/167 (35%)

Query: 305 CKLVDFGNACWTYKQFTNDIQ------TRQYRCPEVLLGSKYSTPADLWSFACICFELAT 358
           CKL DFG       +              +Y  PE+L G  Y T AD++S      E+A 
Sbjct: 196 CKLGDFGLL----VELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVAC 250

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
              L  PH G+ +                                      + +R+    
Sbjct: 251 NMEL--PHGGEGW--------------------------------------QQLRQGYLP 270

Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
           P         +F+   ++++   LV +L+  P+ R TA   L  P +
Sbjct: 271 P---------EFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVL 308

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 88.2 bits (219), Expect = 6e-19
 Identities = 42/178 (23%), Positives = 66/178 (37%), Gaps = 41/178 (23%)

Query: 301 VDLKC---KLVDFGNACWTYKQFTND------IQTRQYRCPEVLLGSK-YSTPADLWSFA 350
           +D      KL DFG+A    KQ          I +R YR PE++ G+  Y++  D+WS  
Sbjct: 189 LDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAG 244

Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
           C+  EL  G  +F    GD+     D L  ++++LG  P         +R+         
Sbjct: 245 CVLAELLLGQPIF---PGDSG---VDQLVEIIKVLGT-P---------TREQIREMNPNY 288

Query: 411 HIRRLRFW---PLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
              +       P  KV               A      +L++ P  R T  +   H +
Sbjct: 289 TEFKFPQIKAHPWTKVFR-------PRTPPEAIALCSRLLEYTPTARLTPLEACAHSF 339

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 18/166 (10%)

Query: 34  RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILK 93
           +  D  +   Y     +G G F  V+ A    +   VA+K  K  Q        E++I++
Sbjct: 46  QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--KVLQD-KRFKNRELQIMR 102

Query: 94  QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVC--MVFEYLGENLLTLIKYADYRG--VPLH 149
           ++      D   +V+L   F  SG     V   +V +Y+ E +  + ++       +P+ 
Sbjct: 103 KL------DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVI 156

Query: 150 MVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK 195
            VK   + +   L ++H    I H D+KP+N+L    +DP     K
Sbjct: 157 YVKLYMYQLFRSLAYIHS-FGICHRDIKPQNLL----LDPDTAVLK 197

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 45/202 (22%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 278 SNEGINKDCKRP------SRSRRKELLAAVDLKCKLVDFGNACWTYKQF-TNDIQTRQYR 330
           SN  +N +C         SRS         ++   + +        +   T+ + TR YR
Sbjct: 138 SNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYR 197

Query: 331 CPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMP 389
            PE+LLGS  Y+   D+WS  CI  E+  G  +F    G +     + L  ++ ++    
Sbjct: 198 APEILLGSTKYTKGIDMWSLGCILGEILCGKPIF---PGSST---MNQLERIIGVIDFPS 251

Query: 390 RKI--AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD--FSEKDANDMA-DFLVP 444
            +   +    +++       +   IR+     +             + D N+ A D L  
Sbjct: 252 NEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDK 311

Query: 445 ILDFVPEKRPTAAQCLTHPWIN 466
           +L F P KR +A   L HP+++
Sbjct: 312 LLQFNPNKRISANDALKHPFVS 333

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 24/149 (16%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEA--ALDEIKILKQIAEGD 99
           +Y +  KLG G +  VW + D +T   VA+K +  + Q+ T+A     EI IL ++    
Sbjct: 10  KYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTEL---- 65

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL---HMVKEICF 156
               + +V LL+  +    N + V +VF+Y+  +L  +I     R   L   H  + + +
Sbjct: 66  -SGHENIVNLLNVLR--ADNDRDVYLVFDYMETDLHAVI-----RANILEPVH-KQYVVY 116

Query: 157 HILVGLDHLHRELS--IIHTDLKPENVLL 183
            ++  + +LH   S  ++H D+KP N+LL
Sbjct: 117 QLIKVIKYLH---SGGLLHRDMKPSNILL 142

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 82.6 bits (205), Expect = 1e-17
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE----AALDEIKILKQIAEG 98
            +    K+G G +  V+ A +  T   VALK  +     TE     A+ EI +LK++   
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL--- 59

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
              +   +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +
Sbjct: 60  ---NHPNIVKLLDVIHTEN----KLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQL 112

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
           L GL   H    ++H DLKP+N+L+
Sbjct: 113 LQGLAFCHSH-RVLHRDLKPQNLLI 136

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 15/147 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
           +YV   K+G G F    L   T+      +K   + + +    E +  E+ +L  +    
Sbjct: 25  KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANM---- 80

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHI 158
                 +V+  + F+ +G     + +V +Y  G +L   I            + +    I
Sbjct: 81  --KHPNIVQYRESFEENG----SLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQI 134

Query: 159 LVGLDHLHRELSIIHTDLKPENVLLMS 185
            + L H+H +  I+H D+K +N+ L  
Sbjct: 135 CLALKHVH-DRKILHRDIKSQNIFLTK 160

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 37/241 (15%), Positives = 71/241 (29%), Gaps = 70/241 (29%)

Query: 302 DLKC-----------KLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLLGSKYSTP 343
           D+K            +L DFG A    +   + ++  +       Y  PE+     Y+  
Sbjct: 150 DIKSQNIFLTKDGTVQLGDFGIA----RVLNSTVELARACIGTPYYLSPEICENKPYNNK 205

Query: 344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF 403
           +D+W+  C+ +EL T    F+  S             M  L                   
Sbjct: 206 SDIWALGCVLYELCTLKHAFEAGS-------------MKNL------------------- 233

Query: 404 NRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHP 463
                +  I    F P++        +S     D+   +  +    P  RP+    L   
Sbjct: 234 -----VLKIISGSFPPVSL------HYSY----DLRSLVSQLFKRNPRDRPSVNSILEKG 278

Query: 464 WI-NVGPRLLEPSMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRDNA 522
           +I     + L P + A +      S             + +  +  +    ++KP+    
Sbjct: 279 FIAKRIEKFLSPQLIAEEFCLKTFSKFGSQPIPAKRPASGQNSISVMPAQKITKPAAKYG 338

Query: 523 A 523
            
Sbjct: 339 I 339

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 24/164 (14%)

Query: 306 KLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDV 361
           K+ DFG A       +QFT++I T  YR PE+LLGS+ YST  D+WS ACI  E+     
Sbjct: 177 KIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTP 236

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR-FWPL 420
           LF    GD+   + D L  + E+LG +P             +     L   ++    +  
Sbjct: 237 LF---PGDS---EIDQLFKIFEVLG-LP---------DDTTWPGVTALPDWKQSFPKFRG 280

Query: 421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
             +        + +  D+   +   L+  P KR +A   L HP+
Sbjct: 281 KTLKRVLGALLDDEGLDLLTAM---LEMDPVKRISAKNALEHPY 321

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 19/154 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE----AALDEIKILKQIAEG 98
           RY   +KLG G +  V+ A DT T+  VA+K  +  +H  E     A+ E+ +LK++   
Sbjct: 35  RYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIR-LEHEEEGVPGTAIREVSLLKEL--- 90

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
                + +++L     H+      + ++FEY   +L   +       V + ++K   + +
Sbjct: 91  ---QHRNIIELKSVIHHNH----RLHLIFEYAENDLKKYMD--KNPDVSMRVIKSFLYQL 141

Query: 159 LVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD 192
           + G++  H     +H DLKP+N LL+S+ D S+ 
Sbjct: 142 INGVNFCHSR-RCLHRDLKPQN-LLLSVSDASET 173

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 84.5 bits (210), Expect = 3e-18
 Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 40/181 (22%)

Query: 302 DLKC-----------KLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLGSK-YSTPADL 346
           DLK            K+ DFG A       +++T++I T  YR P+VL+GSK YST  D+
Sbjct: 125 DLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDI 184

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           WS  CI  E+  G  LF    G +   + D L  +  +LG  P    +            
Sbjct: 185 WSVGCIFAEMVNGTPLF---PGVS---EADQLMRIFRILG-TPNSKNWPN---------- 227

Query: 407 GDLRHIRRLRFWPLNKVLIEKYDFSE--KDANDMA-DFLVPILDFVPEKRPTAAQCLTHP 463
                +  L  +  N  + E   +    K  ++   D L  +L   P +R TA Q L H 
Sbjct: 228 -----VTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHA 282

Query: 464 W 464
           +
Sbjct: 283 Y 283

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 72.5 bits (179), Expect = 2e-14
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 22/147 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTE----AALDEIKILKQIAEG 98
           +Y    K+G G +  V+ A +       ALK  +  +   E      + EI ILK++   
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRL-EKEDEGIPSTTIREISILKEL--- 57

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHM--VKEICF 156
                  +VKL D         + + +VFE+L ++L    K  D     L     K    
Sbjct: 58  ---KHSNIVKLYDVI----HTKKRLVLVFEHLDQDL---KKLLDVCEGGLESVTAKSFLL 107

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            +L G+ + H    ++H DLKP+N+L+
Sbjct: 108 QLLNGIAYCHDR-RVLHRDLKPQNLLI 133

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 86.0 bits (213), Expect = 3e-18
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 18/148 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
             V +  LG+G   TV     +     VA+K         + AL EIK+L +      DD
Sbjct: 16  LVVSEKILGYGSSGTVVFQ-GSFQGRPVAVKRMLIDFC--DIALMEIKLLTES-----DD 67

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKE-----ICFH 157
              V++            + + +  E    NL  L++  +     L + KE     +   
Sbjct: 68  HPNVIRYYCSETTD----RFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQ 123

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           I  G+ HLH  L IIH DLKP+N+L+ +
Sbjct: 124 IASGVAHLH-SLKIIHRDLKPQNILVST 150

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 78/202 (38%)

Query: 289 PSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQ-----------YRCPEVLLG 337
            SR    +   A +L+  + DFG      K+  +   + +           +R PE+L  
Sbjct: 151 SSRFTADQQTGAENLRILISDFGLC----KKLDSGQSSFRTNLNNPSGTSGWRAPELLEE 206

Query: 338 S-------KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPR 390
           S       + +   D++S  C+ + + +                           G  P 
Sbjct: 207 SNNLQTKRRLTRSIDIFSMGCVFYYILSK--------------------------GKHP- 239

Query: 391 KIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFV- 449
              FG +YSR+                   + ++   +   E         +    D + 
Sbjct: 240 ---FGDKYSRE-------------------SNIIRGIFSLDEMKCLHDRSLIAEATDLIS 277

Query: 450 ------PEKRPTAAQCLTHPWI 465
                 P KRPTA + L HP  
Sbjct: 278 QMIDHDPLKRPTAMKVLRHPLF 299

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 85.6 bits (212), Expect = 3e-18
 Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 36/178 (20%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTND------IQTRQYRCPEVLLGS-KYSTPADLWSF 349
           L+ + D   KL DFG+A    K+          I +R YR PE++LG+ +Y+   DLWS 
Sbjct: 173 LVNSKDNTLKLCDFGSA----KKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSI 228

Query: 350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL 409
            C+  EL  G  LF   SG+      D L  +++++G  P         +++   R    
Sbjct: 229 GCVFGELILGKPLF---SGETS---IDQLVRIIQIMGT-P---------TKEQMIRMNPH 272

Query: 410 RHIRRLRFW---PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
               R          K+        E   +   D L  IL + P+ R    + + HP+
Sbjct: 273 YTEVRFPTLKAKDWRKI------LPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPF 324

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 46/177 (25%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
           +Y +   LG G F  V   +D ++    ALK  K  Q        E+ I+K +      D
Sbjct: 8   KYSLGKTLGTGSFGIVCEVFDIESGKRFALK--KVLQD-PRYKNRELDIMKVL------D 58

Query: 103 KKCVVKLLDHFKHSG----------------------------------PNGQHVCMVFE 128
              ++KL+D+F  +G                                     +++ ++ E
Sbjct: 59  HVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIME 118

Query: 129 YLGENLLTLIKYADYRGVPLHM--VKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           Y+ + L  ++K     G  + M  +    + +   +  +H  L I H D+KP+N+L+
Sbjct: 119 YVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH-SLGICHRDIKPQNLLV 174

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 14/159 (8%)

Query: 36  GDTFKNG--RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKIL 92
           G T + G  R  V+  L  G F+ V+ A D  +    ALK +  + +    A + E+  +
Sbjct: 20  GQTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFM 79

Query: 93  KQIAEGDPDDKKCVVKLLDHF---KHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVP 147
           K++          +V+        K     GQ   ++   L  G+ +  L K      + 
Sbjct: 80  KKL-----SGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLS 134

Query: 148 LHMVKEICFHILVGLDHLH-RELSIIHTDLKPENVLLMS 185
              V +I +     + H+H ++  IIH DLK EN+LL +
Sbjct: 135 CDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSN 173

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 38/213 (17%), Positives = 63/213 (29%), Gaps = 68/213 (31%)

Query: 297 LLAAVDLKCKLVDFGNAC---------WTYKQFT---NDIQ---TRQYRCPEVL-LGSK- 339
           LL +     KL DFG+A          W+ ++      +I    T  YR PE++ L S  
Sbjct: 169 LLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNF 228

Query: 340 -YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRY 398
                 D+W+  CI + L      F+         D   L ++              G+Y
Sbjct: 229 PIGEKQDIWALGCILYLLCFRQHPFE---------DGAKLRIV-------------NGKY 266

Query: 399 SRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQ 458
           S                   P +                    +  +L   PE+R + A+
Sbjct: 267 S------------------IPPHDT------QYT----VFHSLIRAMLQVNPEERLSIAE 298

Query: 459 CLTHPWINVGPRLLEPSMAATQPQDTGGSISDK 491
            +         R + P    T+  +  G     
Sbjct: 299 VVHQLQEIAAARNVNPKSPITELLEQNGGYGSA 331

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 85.5 bits (212), Expect = 4e-18
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 26/160 (16%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---------QKSAQHYTEAALDEIKILK 93
            Y++   LG G    V LA++ +T   VA+++                      EI+ILK
Sbjct: 136 EYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILK 195

Query: 94  QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMV 151
           ++      +  C++K+ + F     + +   +V E +  GE L   +     + +     
Sbjct: 196 KL------NHPCIIKIKNFF-----DAEDYYIVLELMEGGE-LFDKV--VGNKRLKEATC 241

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
           K   + +L+ + +LH E  IIH DLKPENVLL S  +   
Sbjct: 242 KLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSSQEEDCL 280

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 36/178 (20%), Positives = 54/178 (30%), Gaps = 64/178 (35%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTR------QYRCPEVLLGS---KYSTPADLWSFACI 352
           D   K+ DFG++    K        R       Y  PEVL+      Y+   D WS   I
Sbjct: 278 DCLIKITDFGHS----KILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVI 333

Query: 353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI 412
            F   +G   + P S                    +  +I  G                 
Sbjct: 334 LFICLSG---YPPFSEHRTQVS-------------LKDQITSG----------------- 360

Query: 413 RRLRFWPLNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
                         KY+F      + ++ A D +  +L   P+ R T  + L HPW+ 
Sbjct: 361 --------------KYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQ 404

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 16/147 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIAEGD 99
            +    K+G G F +V+           A+K      +     + AL E+     +    
Sbjct: 12  EFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLG--- 68

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPL--HMVKEICF 156
                 VV+    +        H+ +  EY  G +L   I              +K++  
Sbjct: 69  --QHSHVVRYFSAWAE----DDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLL 122

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            +  GL ++H  +S++H D+KP N+ +
Sbjct: 123 QVGRGLRYIH-SMSLVHMDIKPSNIFI 148

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 62/189 (32%)

Query: 283 NKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQ----YRCPEVLLGS 338
                  S    ++  A+  +  K+ D G+      + ++  Q  +    +   EVL  +
Sbjct: 151 TSIPNAASEEGDEDDWASNKVMFKIGDLGHV----TRISSP-QVEEGDSRFLANEVLQEN 205

Query: 339 K-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELL-GMMPRKIAFGG 396
             +   AD+++ A      A  + L  P +GD             E+  G +PR      
Sbjct: 206 YTHLPKADIFALALTVVCAAGAEPL--PRNGD----------QWHEIRQGRLPR---IPQ 250

Query: 397 RYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTA 456
             S++F                                     + L  ++   PE+RP+A
Sbjct: 251 VLSQEF------------------------------------TELLKVMIHPDPERRPSA 274

Query: 457 AQCLTHPWI 465
              + H  +
Sbjct: 275 MALVKHSVL 283

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 23/156 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
            +     +G G F  V+ A          +K  K      E A  E+K L ++      D
Sbjct: 12  DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKL------D 62

Query: 103 KKCVVKLLDHF------------KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLH 149
              +V     +              S    + + +  E+     L   I+      +   
Sbjct: 63  HVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKV 122

Query: 150 MVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +  E+   I  G+D++H    +I+ DLKP N+ L+ 
Sbjct: 123 LALELFEQITKGVDYIH-SKKLINRDLKPSNIFLVD 157

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 30/181 (16%), Positives = 45/181 (24%), Gaps = 73/181 (40%)

Query: 302 DLKC-----------KLVDFGNACWTYKQFTNDIQ------TRQYRCPEVLLGSKYSTPA 344
           DLK            K+ DFG          ND +      T +Y  PE +    Y    
Sbjct: 147 DLKPSNIFLVDTKQVKIGDFGLV----TSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEV 202

Query: 345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN 404
           DL++   I  EL    V                     +L     R       + +    
Sbjct: 203 DLYALGLILAELLH--VCDTAFETSK---------FFTDL-----RDGIISDIFDKKEKT 246

Query: 405 RHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
                              L++K                 +L   PE RP  ++ L    
Sbjct: 247 -------------------LLQK-----------------LLSKKPEDRPNTSEILRTLT 270

Query: 465 I 465
           +
Sbjct: 271 V 271

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 83.1 bits (205), Expect = 2e-17
 Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 41  NGRYVVQSKLGWGHFSTVWLA-----WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQI 95
           +    V   LG G F+ V+ A      D +      LKVQK A         E  I  Q+
Sbjct: 64  SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN------PWEFYIGTQL 117

Query: 96  AEG-DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GE--NLLTLIKYADYRGVPLHM 150
            E   P  +   +K                +V E    G   N + L K    + +P  +
Sbjct: 118 MERLKPSMQHMFMKFYSAHLFQ----NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGL 173

Query: 151 VKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS 196
           V      +L  ++ +H +  IIH D+KP+N +L +      D    
Sbjct: 174 VISFAMRMLYMIEQVH-DCEIIHGDIKPDNFILGNGFLEQDDEDDL 218

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 63.1 bits (153), Expect = 7e-11
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 302 DLKCKLVDFGNACWTY-----KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
                L+D G +           FT   +T  ++C E+L    ++   D +  A   + +
Sbjct: 219 SAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCM 278

Query: 357 ATGDVLFDPHSGDNYDRDE 375
             G  +   + G     + 
Sbjct: 279 LFGTYMKVKNEGGECKPEG 297

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 84.7 bits (209), Expect = 2e-17
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGD 99
           G + ++ +LG G F  V       T   VA+K   Q+ +    E    EI+I+K++    
Sbjct: 14  GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL---- 69

Query: 100 PDDKKCVVKLLDHF--KHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEIC 155
             +   VV   +               +  EY   G+    L ++ +  G+    ++ + 
Sbjct: 70  --NHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLL 127

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             I   L +LH E  IIH DLKPEN++L  
Sbjct: 128 SDISSALRYLH-ENRIIHRDLKPENIVLQP 156

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 34/174 (19%)

Query: 306 KLVDFGNACWTYKQFTNDIQ------TRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           K++D G A    K+            T QY  PE+L   KY+   D WSF  + FE  TG
Sbjct: 164 KIIDLGYA----KELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITG 219

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              F P   +            ++  G +  K      +   + +  G ++    L    
Sbjct: 220 ---FRPFLPNW---------QPVQWHGKVREKSNE---HIVVYDDLTGAVKFSSVLPTPN 264

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLE 473
                      S   A  +  +L  +L +   +R T  Q            +L 
Sbjct: 265 ---------HLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILS 309

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 18/151 (11%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAE 97
             + ++ K+G G FS V+ A        VALK                + EI +LKQ+  
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQL-- 89

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPL--HMVKEI 154
               +   V+K    F         + +V E     +L  +IK+   +   +    V + 
Sbjct: 90  ----NHPNVIKYYASFIEDN----ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKY 141

Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
              +   L+H+H    ++H D+KP NV + +
Sbjct: 142 FVQLCSALEHMH-SRRVMHRDIKPANVFITA 171

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 66/182 (36%)

Query: 302 DLKC-----------KLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLLGSKYSTP 343
           D+K            KL D G      + F++             Y  PE +  + Y+  
Sbjct: 161 DIKPANVFITATGVVKLGDLGLG----RFFSSKTTAAHSLVGTPYYMSPERIHENGYNFK 216

Query: 344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF 403
           +D+WS  C+ +E+A     F       Y    +  +L          KI     Y     
Sbjct: 217 SDIWSLGCLLYEMAALQSPF-------YGDKMNLYSLCK--------KIE-QCDYPP--- 257

Query: 404 NRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHP 463
                                +    +SE    ++   +   ++  PEKRP         
Sbjct: 258 ---------------------LPSDHYSE----ELRQLVNMCINPDPEKRPDVTYVYDVA 292

Query: 464 WI 465
             
Sbjct: 293 KR 294

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 22/152 (14%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
           +   + LG G F  V  A +   S Y A+K  +  +      L E+ +L  +      + 
Sbjct: 8   FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASL------NH 61

Query: 104 KCVVKLLDHFKHSGP---------NGQHVCMVFEYL-GENLLTLIKYADYRGVPL--HMV 151
           + VV+    +                  + +  EY     L  LI       +       
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIH---SENLNQQRDEY 118

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +   IL  L ++H +  IIH DLKP N+ +
Sbjct: 119 WRLFRQILEALSYIHSQ-GIIHRDLKPMNIFI 149

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 38/196 (19%), Positives = 56/196 (28%), Gaps = 75/196 (38%)

Query: 302 DLKC-----------KLVDFG-----------------NACWTYKQFTNDIQTRQYRCPE 333
           DLK            K+ DFG                 N   +    T+ I T  Y   E
Sbjct: 141 DLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATE 200

Query: 334 VLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKI 392
           VL G+  Y+   D++S   I FE+          +G             + +L    +K+
Sbjct: 201 VLDGTGHYNEKIDMYSLGIIFFEMIYP-----FSTGME----------RVNIL----KKL 241

Query: 393 AFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEK 452
                                   F P         DF +         +  ++D  P K
Sbjct: 242 -RSVSI-----------------EFPP---------DFDDNKMKVEKKIIRLLIDHDPNK 274

Query: 453 RPTAAQCLTHPWINVG 468
           RP A   L   W+ V 
Sbjct: 275 RPGARTLLNSGWLPVK 290

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
            +  +  LG G   T+        +  VA+K           A  E+++L++      D+
Sbjct: 25  SFCPKDVLGHGAEGTIVYR-GMFDNRDVAVKRILPECF--SFADREVQLLRES-----DE 76

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
              V++     K      Q   +  E     L   ++  D+  + L     +      GL
Sbjct: 77  HPNVIRYFCTEKDR----QFQYIAIELCAATLQEYVEQKDFAHLGLEP-ITLLQQTTSGL 131

Query: 163 DHLHRELSIIHTDLKPENVLLMS 185
            HLH  L+I+H DLKP N+L+  
Sbjct: 132 AHLH-SLNIVHRDLKPHNILISM 153

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 63/178 (35%)

Query: 302 DLKCKLVDFGNAC------WTYKQFTNDIQTRQYRCPEVLLGS---KYSTPADLWSFACI 352
            +K  + DFG          ++ + +    T  +  PE+L        +   D++S  C+
Sbjct: 159 KIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCV 218

Query: 353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI 412
            + + +                           G  P    FG    R            
Sbjct: 219 FYYVISE--------------------------GSHP----FGKSLQRQAN--------- 239

Query: 413 RRLRFWPLNKVLIEKYDFS----EKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
                     +L+          EK  + +A + +  ++   P+KRP+A   L HP+ 
Sbjct: 240 ----------ILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFF 287

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 81.3 bits (201), Expect = 6e-17
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 13/158 (8%)

Query: 35  MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQ 94
           + D     ++V+  K+G G F  ++LA+ T      A  V K           E+K  ++
Sbjct: 31  LDDMEG-NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQR 89

Query: 95  IAEGDPDDKKCVVKLLDHF---------KHSGPNGQHVCMVFEYLGENLLTLIKYADYRG 145
           +A+ D   K    K LD+                  +  MV E LG +L  +        
Sbjct: 90  VAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQ--NGT 147

Query: 146 VPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
                V ++   +L  L+++H E   +H D+K  N+LL
Sbjct: 148 FKKSTVLQLGIRMLDVLEYIH-ENEYVHGDIKAANLLL 184

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 42/168 (25%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---------QKSAQHYTEAALDEIKILK 93
            Y++   LG G    V LA++ +T   VA+K+                      EI+ILK
Sbjct: 11  EYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILK 70

Query: 94  QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI--------KYADY 143
           ++      +  C++K+ + F     + +   +V E +  GE L   +             
Sbjct: 71  KL------NHPCIIKIKNFF-----DAEDYYIVLELMEGGE-LFDKVVGNKRLKEATC-- 116

Query: 144 RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
                   K   + +L+ + +LH E  IIH DLKPENVLL S  +   
Sbjct: 117 --------KLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSSQEEDCL 155

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 43/219 (19%), Positives = 66/219 (30%), Gaps = 71/219 (32%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQ------YRCPEVLLGS---KYSTPADLWSFACI 352
           D   K+ DFG++    K        R       Y  PEVL+      Y+   D WS   I
Sbjct: 153 DCLIKITDFGHS----KILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVI 208

Query: 353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI 412
            F   +G   + P S                    +  +I  G                 
Sbjct: 209 LFICLSG---YPPFSEHRTQVS-------------LKDQITSG----------------- 235

Query: 413 RRLRFWPLNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI--- 465
                         KY+F      + ++ A D +  +L   P+ R T  + L HPW+   
Sbjct: 236 --------------KYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDE 281

Query: 466 ----NVGPRLLEPSMAATQPQDTGGSISDKNRREKDERE 500
                    L E + +   PQ      + + R  + E E
Sbjct: 282 DMKRKFQDLLSEENESTALPQVLAQPSTSRKRPREGEAE 320

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 79.9 bits (198), Expect = 1e-16
 Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 25/156 (16%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPD 101
            ++    LG G FS V+L     T    ALK  +KS      +  +EI +LK+I      
Sbjct: 10  TFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKI------ 63

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI----KYADYRGVPLHMVKEIC 155
             + +V L D ++    +  H  +V + +  GE L   I     Y +           + 
Sbjct: 64  KHENIVTLEDIYE----STTHYYLVMQLVSGGE-LFDRILERGVYTE------KDASLVI 112

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
             +L  + +LH E  I+H DLKPEN+L ++  + SK
Sbjct: 113 QQVLSAVKYLH-ENGIVHRDLKPENLLYLTPEENSK 147

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 38/169 (22%), Positives = 54/169 (31%), Gaps = 53/169 (31%)

Query: 302 DLKCKLVDFGNA-CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGD 360
           + K  + DFG +        +    T  Y  PEVL    YS   D WS   I + L  G 
Sbjct: 145 NSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGY 204

Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL 420
             F       Y+  E  L                                          
Sbjct: 205 PPF-------YEETESKL-----------------------------------------F 216

Query: 421 NKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
            K+    Y+F      D ++ A DF+  +L+  P +R T  + L+HPWI
Sbjct: 217 EKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWI 265

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 22/159 (13%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV------QKSAQHYTEAALDEIKILKQIA 96
            Y +   +G G FS V    + +T    A+K+        S    TE    E  I   + 
Sbjct: 25  VYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML- 83

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPL--HMVK 152
                    +V+LL+ +     +   + MVFE++   + L   I      G      +  
Sbjct: 84  -----KHPHIVELLETYS----SDGMLYMVFEFMDGAD-LCFEIVKRADAGFVYSEAVAS 133

Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
                IL  L + H + +IIH D+KP  VLL S  + + 
Sbjct: 134 HYMRQILEALRYCH-DNNIIHRDVKPHCVLLASKENSAP 171

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 35/167 (20%), Positives = 51/167 (30%), Gaps = 56/167 (33%)

Query: 306 KLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL 362
           KL  FG A    +        + T  +  PEV+    Y  P D+W    I F L      
Sbjct: 173 KLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFIL------ 226

Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
                                L G +P    F G   R F                    
Sbjct: 227 ---------------------LSGCLP----FYGTKERLF------------------EG 243

Query: 423 VLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
           ++  KY  +       ++ A D +  +L   P +R T  + L HPW+
Sbjct: 244 IIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWL 290

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 79.7 bits (196), Expect = 2e-16
 Identities = 22/170 (12%), Positives = 51/170 (30%), Gaps = 30/170 (17%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD----EIKILKQIAEG 98
           +  +   L  G  S V+L  D +     ALKV       + + L+          ++   
Sbjct: 63  KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGE 122

Query: 99  DPDD------------------KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKY 140
            P++                  +    +L            +  ++      +L  L   
Sbjct: 123 SPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDD--YAVANYLLLMPAASVDLELLFST 180

Query: 141 ADYRGV-----PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
            D+  V      +  +  +   ++    +L     ++H    P+N+ +M 
Sbjct: 181 LDFVYVFRGDEGILALHILTAQLIRLAANLQS-KGLVHGHFTPDNLFIMP 229

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 68.2 bits (166), Expect = 1e-12
 Identities = 20/186 (10%), Positives = 37/186 (19%), Gaps = 41/186 (22%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSK--YSTPADLWSFACICF 354
           L    D +  L D         +         Y   E L  S   ++   + W      +
Sbjct: 225 LFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIY 284

Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR 414
            +    + F                  + + G                      L  I R
Sbjct: 285 RVWCLFLPFG---LVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFV----KTL--IGR 335

Query: 415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEP 474
                                          L+F   +R    + +  P        +  
Sbjct: 336 F------------------------------LNFDRRRRLLPLEAMETPEFLQLQNEISS 365

Query: 475 SMAATQ 480
           S++  Q
Sbjct: 366 SLSTGQ 371

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 19/153 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK--SAQHYTEAALDEIKILKQIAEGDP 100
            +     LG G F  V+ A +       A+K  +  + +   E  + E+K L ++     
Sbjct: 6   DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL----- 60

Query: 101 DDKKCVVKLLDHFKHSGPNGQH--------VCMVFEYL-GENLLTLIKYADYRG-VPLHM 150
            +   +V+  + +       +         + +  +    ENL   +            +
Sbjct: 61  -EHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSV 119

Query: 151 VKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
              I   I   ++ LH    ++H DLKP N+  
Sbjct: 120 CLHIFLQIAEAVEFLH-SKGLMHRDLKPSNIFF 151

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 64/190 (33%)

Query: 302 DLKCKLVDFGNAC---------------WTYKQFTNDIQTRQYRCPEVLLGSKYSTPADL 346
           D   K+ DFG                    Y + T  + T+ Y  PE + G+ YS   D+
Sbjct: 154 DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDI 213

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           +S   I FEL                                     F  +       R 
Sbjct: 214 FSLGLILFELLY----------------------------------PFSTQ-----MERV 234

Query: 407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             L  +R L+F PL            +        +  +L   P +RP A   + +    
Sbjct: 235 RTLTDVRNLKFPPL----------FTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFE 284

Query: 467 VGPRLLEPSM 476
                 +  +
Sbjct: 285 DLDFPGKTVL 294

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 77.6 bits (192), Expect = 4e-16
 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 17/152 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPD 101
            Y +++ +G G +  V +A    T    A K   K      +    EI+I+K +      
Sbjct: 10  YYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSL------ 63

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHIL 159
           D   +++L + F+    +   + +V E    GE    ++    +          I   +L
Sbjct: 64  DHPNIIRLYETFE----DNTDIYLVMELCTGGELFERVVHKRVF---RESDAARIMKDVL 116

Query: 160 VGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
             + + H +L++ H DLKPEN L ++    S 
Sbjct: 117 SAVAYCH-KLNVAHRDLKPENFLFLTDSPDSP 147

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 36/170 (21%), Positives = 52/170 (30%), Gaps = 55/170 (32%)

Query: 302 DLKCKLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           D   KL+DFG A      K     + T  Y  P+VL G  Y    D WS   + + L   
Sbjct: 145 DSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVL--- 200

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
                                   L G  P    F      +                  
Sbjct: 201 ------------------------LCGYPP----FSAPTDSEVML--------------- 217

Query: 420 LNKVLIEKYDFSEKDANDMA----DFLVPILDFVPEKRPTAAQCLTHPWI 465
             K+    + F EKD  +++      +  +L   P++R T+ Q L H W 
Sbjct: 218 --KIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWF 265

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 79.9 bits (197), Expect = 4e-16
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 20/190 (10%)

Query: 2   AEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFK-NGRYVVQSKLGWGHFSTVWL 60
                      S    +        +      R    ++   RY ++  +G G +  V  
Sbjct: 12  HNSGTQHTVSGSQQEGQQRKQHHSSKPTASMPRPHSDWQIPDRYEIRHLIGTGSYGHVCE 71

Query: 61  AWDTQTSHYVALK-VQKSAQHYTEA--ALDEIKILKQIAEGDPDDKKCVVKLLDHFK-HS 116
           A+D      VA+K + +  +   +    L EI IL ++      +   VVK+LD      
Sbjct: 72  AYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRL------NHDHVVKVLDIVIPKD 125

Query: 117 GPNGQHVCMVFEYLGENLLTLIKYADYRGVPL---HMVKEICFHILVGLDHLHRELSIIH 173
                 + +V E    +   L +      V L   H +K + +++LVG+ ++H    I+H
Sbjct: 126 VEKFDELYVVLEIADSDFKKLFR----TPVYLTELH-IKTLLYNLLVGVKYVH-SAGILH 179

Query: 174 TDLKPENVLL 183
            DLKP N L+
Sbjct: 180 RDLKPANCLV 189

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 49/231 (21%), Positives = 80/231 (34%), Gaps = 60/231 (25%)

Query: 278 SNEGINKDCK-------------RPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDI 324
           +N  +N+DC               P     +  ++  +    LV F +     +Q T  +
Sbjct: 185 ANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHV 244

Query: 325 QTRQYRCPEVLLGSK-YSTPADLWSFACICFEL-----------ATGDVLF--------- 363
            TR YR PE++L  + Y+   D+WS  CI  EL           A    LF         
Sbjct: 245 VTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLS 304

Query: 364 -----DPHSGDNYDRDEDHLALMMELLGMMPRKI--AFGGRYSRDFFNRHGDLRHIRRLR 416
                      +   + D L ++  +LG    +   A     ++ +         IR   
Sbjct: 305 PDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRY---------IRIFP 355

Query: 417 FWPLNKVLIEKYDFSEK--DANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
                       D +E+   ++  A   L  +L F P KR T  +CL HP+
Sbjct: 356 KRE-------GTDLAERFPASSADAIHLLKRMLVFNPNKRITINECLAHPF 399

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 78.0 bits (193), Expect = 4e-16
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 27/152 (17%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGD 99
           RY +   LG G F  V    D  T    A+KV     +    T   L E+++LK++    
Sbjct: 23  RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL---- 78

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI----KYADYRGVPLHMVKE 153
             D   ++KL +  +    +     +V E    GE L   I    ++++      H    
Sbjct: 79  --DHPNIMKLFEILE----DSSSFYIVGELYTGGE-LFDEIIKRKRFSE------HDAAR 125

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           I   +  G+ ++H + +I+H DLKPEN+LL S
Sbjct: 126 IIKQVFSGITYMH-KHNIVHRDLKPENILLES 156

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 45/170 (26%), Positives = 58/170 (34%), Gaps = 55/170 (32%)

Query: 302 DLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           D   K++DFG +       +  + I T  Y  PEVL G  Y    D+WS   I + L   
Sbjct: 160 DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYIL--- 215

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
                                   L G  P    F G+   D                  
Sbjct: 216 ------------------------LSGTPP----FYGKNEYDILK--------------- 232

Query: 420 LNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
             +V   KY F     +  +D A D +  +L F P  R TA QCL HPWI
Sbjct: 233 --RVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWI 280

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 77.8 bits (192), Expect = 4e-16
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 41  NGRYV-VQSKLGWGHFSTVWLAWDTQTSHYVALK---VQKSAQHYTEAALDEIKILKQIA 96
           +GR++    ++G G F TV+   DT+T+  VA      +K  +   +   +E ++LK + 
Sbjct: 24  DGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL- 82

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEIC 155
                    +V+  D ++ +    + + +V E +    L T +K   ++ + + +++  C
Sbjct: 83  -----QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK--RFKVMKIKVLRSWC 135

Query: 156 FHILVGLDHLH-RELSIIHTDLKPENVLLMSM 186
             IL GL  LH R   IIH DLK +N+ +   
Sbjct: 136 RQILKGLQFLHTRTPPIIHRDLKCDNIFITGP 167

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 59/177 (33%)

Query: 302 DLKC------------KLVDFGNACWTYKQFTNDIQ-TRQYRCPEVLLGSKYSTPADLWS 348
           DLKC            K+ D G A      F   +  T ++  PE+    KY    D+++
Sbjct: 156 DLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMY-EEKYDESVDVYA 214

Query: 349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD 408
           F     E+AT +    P+S      +  + A +   +    +  +F      +       
Sbjct: 215 FGMCMLEMATSEY---PYS------ECQNAAQIYRRVTSGVKPASFDKVAIPEV------ 259

Query: 409 LRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                                          + +   +    ++R +    L H + 
Sbjct: 260 ------------------------------KEIIEGCIRQNKDERYSIKDLLNHAFF 286

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 18/149 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAAL-DEIKILKQIAEGDP 100
            ++ + KLG G F  V L  +  +     +K   K         +  EI++LK +     
Sbjct: 23  LFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSL----- 77

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPL--HMVKEICF 156
            D   ++K+ + F+    +  ++ +V E    GE LL  I  A  RG  L    V E+  
Sbjct: 78  -DHPNIIKIFEVFE----DYHNMYIVMETCEGGE-LLERIVSAQARGKALSEGYVAELMK 131

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            ++  L + H    ++H DLKPEN+L   
Sbjct: 132 QMMNALAYFH-SQHVVHKDLKPENILFQD 159

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 54/165 (32%)

Query: 306 KLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K++DFG A    + +  TN   T  Y  PEV      +   D+WS   + + L       
Sbjct: 167 KIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKR-DVTFKCDIWSAGVVMYFL------- 218

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                               L G +P    F G    +                    K 
Sbjct: 219 --------------------LTGCLP----FTGTSLEEVQQ-----------------KA 237

Query: 424 LIEKYDFSE--KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
             ++ +++   +     A D L  +L   PE+RP+AAQ L H W 
Sbjct: 238 TYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHHEWF 282

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 77.7 bits (192), Expect = 7e-16
 Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 33/161 (20%)

Query: 43  RYVVQSK-LGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDP 100
            Y +Q   LG G  + V    +  TS   A+K+ +K   H       E+++L Q      
Sbjct: 13  VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQ---- 68

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI--------KYADYRGVPLHM 150
              + V++L++ F+          +VFE +  G  +L+ I          A         
Sbjct: 69  -GHRNVLELIEFFE----EEDRFYLVFEKMRGGS-ILSHIHKRRHFNELEA--------- 113

Query: 151 VKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
              +   +   LD LH    I H DLKPEN+L       S 
Sbjct: 114 -SVVVQDVASALDFLH-NKGIAHRDLKPENILCEHPNQVSP 152

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 40/180 (22%), Positives = 58/180 (32%), Gaps = 52/180 (28%)

Query: 306 KLVDFG------NACWTYKQFTNDIQTR----QYRCPEVLLG-----SKYSTPADLWSFA 350
           K+ DF                T ++ T     +Y  PEV+       S Y    DLWS  
Sbjct: 154 KICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLG 213

Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
            I + L +G   F    G +   D        +   M+   I  G               
Sbjct: 214 VILYILLSGYPPFVGRCGSDCGWDRGEACPACQ--NMLFESIQEG--------------- 256

Query: 411 HIRRLRFWPLNKVLIEKYDFSEKDAN---DMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
                           KY+F +KD       A D +  +L    ++R +AAQ L HPW+ 
Sbjct: 257 ----------------KYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQ 300

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 77.4 bits (191), Expect = 7e-16
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 16/145 (11%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQI--AEG 98
             RY +  K+G G F  ++L  D      VA+K++     + +    E KI K +    G
Sbjct: 8   GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQ-LHIESKIYKMMQGGVG 66

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
            P             +  G  G +  MV E LG +L  L  +   R   L  V  +   +
Sbjct: 67  IP-----------TIRWCGAEGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQM 114

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
           +  ++++H   + IH D+KP+N L+
Sbjct: 115 ISRIEYIH-SKNFIHRDVKPDNFLM 138

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 76.8 bits (190), Expect = 8e-16
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 35/162 (21%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGD 99
            Y V+ +LG G FS V       T    A K+   +K +    +    E +I +++    
Sbjct: 7   NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL---- 62

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI--------KYADYRGVPLH 149
                 +V+L D  +          +VF+ +  GE L   I          A        
Sbjct: 63  --QHPNIVRLHDSIQ----EESFHYLVFDLVTGGE-LFEDIVAREFYSEADA-------- 107

Query: 150 MVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
                   IL  + + H    I+H +LKPEN+LL S    + 
Sbjct: 108 --SHCIQQILESIAYCH-SNGIVHRNLKPENLLLASKAKGAA 146

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 38/170 (22%), Positives = 52/170 (30%), Gaps = 54/170 (31%)

Query: 302 DLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
               KL DFG A      + +     T  Y  PEVL    YS P D+W+   I + L  G
Sbjct: 144 GAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG 203

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              + P     +D D+  L                                         
Sbjct: 204 ---YPPF----WDEDQHRL----------------------------------------- 215

Query: 420 LNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
             ++    YD+           A   +  +L   P+KR TA Q L  PWI
Sbjct: 216 YAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWI 265

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 77.7 bits (192), Expect = 8e-16
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 43  RYVVQSK-LGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEG 98
            Y++ SK LG G F+ V       T    A K    ++  Q      L EI +L+     
Sbjct: 29  FYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELA--- 85

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICF 156
                  V+ L + ++    N   + ++ EY   GE + +L        V  + V  +  
Sbjct: 86  --KSCPRVINLHEVYE----NTSEIILILEYAAGGE-IFSLCLPELAEMVSENDVIRLIK 138

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
            IL G+ +LH + +I+H DLKP+N+LL S+     
Sbjct: 139 QILEGVYYLH-QNNIVHLDLKPQNILLSSIYPLGD 172

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 37/167 (22%), Positives = 59/167 (35%), Gaps = 54/167 (32%)

Query: 306 KLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K+VDFG +       +    + T +Y  PE+L     +T  D+W+   I + L       
Sbjct: 174 KIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYML------- 226

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                               L    P    F G  +++ +                   +
Sbjct: 227 --------------------LTHTSP----FVGEDNQETYL-----------------NI 245

Query: 424 LIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
                D+SE      + +A DF+  +L   PEKRPTA  CL+H W+ 
Sbjct: 246 SQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQ 292

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 35  MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQ 94
           MG       + V  K+G G+F  + L  +  T+ YVA+K++            E +  KQ
Sbjct: 2   MGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAP-QLHLEYRFYKQ 60

Query: 95  I--AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVK 152
           +   +G P              + GP G++  MV E LG +L  L    D R   L  V 
Sbjct: 61  LGSGDGIP-----------QVYYFGPCGKYNAMVLELLGPSLEDLFDLCD-RTFSLKTVL 108

Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENVLL 183
            I   ++  ++++H + ++I+ D+KPEN L+
Sbjct: 109 MIAIQLISRMEYVHSK-NLIYRDVKPENFLI 138

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 19/148 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEA--ALDEIKILKQIAEGD 99
            Y+++  +G G +  V+LA+D  T   VA+K V +  +   +    L EI IL ++    
Sbjct: 27  NYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRL---- 82

Query: 100 PDDKKCVVKLLDHFKHSGPNG-QHVCMVFEYLGENLLTLIKYADYRGVPL---HMVKEIC 155
                 +++L D            + +V E    +L  L K      + L   H +K I 
Sbjct: 83  --KSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFK----TPIFLTEEH-IKTIL 135

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
           +++L+G + +H E  IIH DLKP N LL
Sbjct: 136 YNLLLGENFIH-ESGIIHRDLKPANCLL 162

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 54/225 (24%)

Query: 278 SNEGINKDCK---------RPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQ 328
           +N  +N+DC          R + +  K+     DL+       +     KQ T+ + TR 
Sbjct: 158 ANCLLNQDCSVKVCDFGLAR-TINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRW 216

Query: 329 YRCPEVLLGSK-YSTPADLWSFACICFELATGDV-----------LF----------DPH 366
           YR PE++L  + Y+   D+WS  CI  EL                LF          D +
Sbjct: 217 YRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRN 276

Query: 367 SGDNYDRDE-DHLALMMELLGMMPRK--IAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
           S   +++   D L ++  ++G                 +         I+          
Sbjct: 277 SKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKY---------IKLFPHRK---- 323

Query: 424 LIEKYDFSEK--DANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
                +  +K    +D   + L  +L F P KR T  Q L HP++
Sbjct: 324 ---PINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDHPYL 365

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 21/168 (12%)

Query: 304 KCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATG- 359
           K +L+D+G A      +++   + +R ++ PE+L+  + Y    D+WS  C+   +    
Sbjct: 169 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRK 228

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
           +  F  H  DNYD     L  + ++LG       +  +Y+ +      D R    L    
Sbjct: 229 EPFF--HGHDNYD----QLVRIAKVLGT-EDLYDYIDKYNIEL-----DPRFNDILGRHS 276

Query: 420 LNKVLIEKYDFSE--KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
             +   E++  SE     +  A DFL  +L +  + R TA + + HP+
Sbjct: 277 --RKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPY 322

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
            Y +  KLG G +S V+ A +   +  V +K+ K  +   +    EIKIL+ +  G    
Sbjct: 37  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK--KKIKREIKILENLRGG---- 90

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
              ++ L D  K   P  +   +VFE++       +    Y+ +  + ++   + IL  L
Sbjct: 91  -PNIITLADIVKD--PVSRTPALVFEHVNNTDFKQL----YQTLTDYDIRFYMYEILKAL 143

Query: 163 DHLHRELSIIHTDLKPENVLL 183
           D+ H    I+H D+KP NV++
Sbjct: 144 DYCHSM-GIMHRDVKPHNVMI 163

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 41/161 (25%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----------QKSAQHYTEAALDEIKIL 92
            Y  +  LG G  S V       T    A+K+           +  Q   EA L E+ IL
Sbjct: 18  NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 77

Query: 93  KQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI--------KYAD 142
           +++          +++L D ++          +VF+ +  GE L   +        K   
Sbjct: 78  RKV-----SGHPNIIQLKDTYE----TNTFFFLVFDLMKKGE-LFDYLTEKVTLSEKET- 126

Query: 143 YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
                    ++I   +L  +  LH +L+I+H DLKPEN+LL
Sbjct: 127 ---------RKIMRALLEVICALH-KLNIVHRDLKPENILL 157

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 38/182 (20%), Positives = 54/182 (29%), Gaps = 60/182 (32%)

Query: 297 LLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGS------KYSTPADLWS 348
           +L   D+  KL DFG +C     ++      T  Y  PE++  S       Y    D+WS
Sbjct: 155 ILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWS 214

Query: 349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD 408
              I + L                           L G  P    F  R           
Sbjct: 215 TGVIMYTL---------------------------LAGSPP----FWHRKQMLMLR---- 239

Query: 409 LRHIRRLRFWPLNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
                         ++   Y F      D +D   D +   L   P+KR TA + L HP+
Sbjct: 240 -------------MIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPF 286

Query: 465 IN 466
             
Sbjct: 287 FQ 288

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 76.0 bits (187), Expect = 3e-15
 Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 15/148 (10%)

Query: 39  FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIA 96
            K+  +   S+LG G+   V+      +   +A K+   +         + E+++L +  
Sbjct: 30  LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC- 88

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEIC 155
                +   +V     F   G     + +  E++ G +L  ++K A    +P  ++ ++ 
Sbjct: 89  -----NSPYIVGFYGAFYSDG----EISICMEHMDGGSLDQVLKKA--GRIPEQILGKVS 137

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
             ++ GL +L  +  I+H D+KP N+L+
Sbjct: 138 IAVIKGLTYLREKHKIMHRDVKPSNILV 165

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 65.6 bits (160), Expect = 9e-12
 Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 25/173 (14%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQ-----TRQYRCPEVLLGSKYSTPADLWSFACICFELAT 358
           + KL DFG +     Q  + +      TR Y  PE L G+ YS  +D+WS      E+A 
Sbjct: 170 EIKLCDFGVS----GQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAV 225

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
           G     P      +       +    +     +     R      N+ G         F 
Sbjct: 226 GRYPIPPPDAKELE------LMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFE 279

Query: 419 PLNKV------LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
            L+ +       +    FS     +  DF+   L   P +R    Q + H +I
Sbjct: 280 LLDYIVNEPPPKLPSGVFSL----EFQDFVNKCLIKNPAERADLKQLMVHAFI 328

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 35/162 (21%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGD 99
            Y V+ +LG G FS V       T    A K+   +K +    +    E +I +++    
Sbjct: 30  NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL---- 85

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI--------KYADYRGVPLH 149
                 +V+L D  +          +VF+ +  GE L   I          A        
Sbjct: 86  --QHPNIVRLHDSIQ----EESFHYLVFDLVTGGE-LFEDIVAREFYSEADA-------- 130

Query: 150 MVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
                   IL  + + H    I+H +LKPEN+LL S    + 
Sbjct: 131 --SHCIQQILESIAYCH-SNGIVHRNLKPENLLLASKAKGAA 169

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 39/170 (22%), Positives = 52/170 (30%), Gaps = 54/170 (31%)

Query: 302 DLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
               KL DFG A      + +     T  Y  PEVL    YS P D+W+   I + L   
Sbjct: 167 GAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYIL--- 223

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
                                   L+G  P    F         ++H     I+      
Sbjct: 224 ------------------------LVGYPP----FWDE------DQHRLYAQIKAG---- 245

Query: 420 LNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
                   YD+           A   +  +L   P+KR TA Q L  PWI
Sbjct: 246 -------AYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWI 288

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 74.9 bits (185), Expect = 4e-15
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 23/159 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALD------EIKILKQI 95
            Y +  +LG G F+ V       T    A K  +K     +   +       E+ IL++I
Sbjct: 6   HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI 65

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKE 153
                     ++ L D F+    N   V ++ E +  GE L   +   +   +      +
Sbjct: 66  ------RHPNIITLHDIFE----NKTDVVLILELVSGGE-LFDFLAEKES--LTEDEATQ 112

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD 192
               IL G+ +LH    I H DLKPEN++L+    P+  
Sbjct: 113 FLKQILDGVHYLH-SKRIAHFDLKPENIMLLDKNVPNPR 150

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 54/167 (32%)

Query: 306 KLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           KL+DFG A       +F N   T ++  PE++        AD+WS   I + L +G    
Sbjct: 152 KLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG---A 208

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
            P  G+                    ++                            L  +
Sbjct: 209 SPFLGET------------------KQET---------------------------LTNI 223

Query: 424 LIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
               YDF E    + +++A DF+  +L   P++R T AQ L H WI 
Sbjct: 224 SAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIK 270

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 19/148 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGD 99
            Y    KLG G +  V L  D  T    A+K+      +       L+E+ +LK +    
Sbjct: 38  MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLL---- 93

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH 157
             D   ++KL D F+    + ++  +V E    GE    +I    +          I   
Sbjct: 94  --DHPNIMKLYDFFE----DKRNYYLVMECYKGGELFDEIIHRMKF---NEVDAAVIIKQ 144

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +L G+ +LH + +I+H DLKPEN+LL S
Sbjct: 145 VLSGVTYLH-KHNIVHRDLKPENLLLES 171

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 39/166 (23%), Positives = 56/166 (33%), Gaps = 55/166 (33%)

Query: 306 KLVDFGNAC--WTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K+VDFG +      K+    + T  Y  PEVL   KY    D+WS   I F L  G   F
Sbjct: 179 KIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFILLAGYPPF 237

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                    + +  +                                         L KV
Sbjct: 238 -------GGQTDQEI-----------------------------------------LRKV 249

Query: 424 LIEKYDFSEKDANDMA----DFLVPILDFVPEKRPTAAQCLTHPWI 465
              KY F   +  +++    D +  +L F  ++R +A Q L HPWI
Sbjct: 250 EKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWI 295

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 74.7 bits (184), Expect = 5e-15
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 16/145 (11%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGD- 99
              Y V  ++G G F  ++   +   +  VA+K +           DE +  K +A    
Sbjct: 9   GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAP-QLRDEYRTYKLLAGCTG 67

Query: 100 -PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
            P           +  + G  G H  +V + LG +L  L+     R   +  V      +
Sbjct: 68  IP-----------NVYYFGQEGLHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQM 115

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
           L  +  +H E S+++ D+KP+N L+
Sbjct: 116 LARVQSIH-EKSLVYRDIKPDNFLI 139

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 40/160 (25%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---------QKSAQHYTEAALDEIKILK 93
           +Y  +  +G G  S V       T H  A+K+          +  +   EA   E  IL+
Sbjct: 95  KYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILR 154

Query: 94  QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI--------KYADY 143
           Q+A         ++ L+D ++    +   + +VF+ +  GE L   +        K    
Sbjct: 155 QVA-----GHPHIITLIDSYE----SSSFMFLVFDLMRKGE-LFDYLTEKVALSEKET-- 202

Query: 144 RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
                   + I   +L  +  LH   +I+H DLKPEN+LL
Sbjct: 203 --------RSIMRSLLEAVSFLH-ANNIVHRDLKPENILL 233

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 42/181 (23%), Positives = 58/181 (32%), Gaps = 60/181 (33%)

Query: 297 LLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGS------KYSTPADLWS 348
           +L   +++ +L DFG +C     ++      T  Y  PE+L  S       Y    DLW+
Sbjct: 231 ILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWA 290

Query: 349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD 408
              I F L                           L G  P    F  R       +   
Sbjct: 291 CGVILFTL---------------------------LAGSPP----FWHR------RQILM 313

Query: 409 LRHIRRLRFWPLNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPW 464
           LR I              +Y FS     D +    D +  +L   PE R TA Q L HP+
Sbjct: 314 LRMIME-----------GQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPF 362

Query: 465 I 465
            
Sbjct: 363 F 363

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 19/148 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGD 99
           RY +   LG G F  V    D  T    A+KV     +    T   L E+++LK++    
Sbjct: 23  RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL---- 78

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH 157
             D   ++KL +  +    +     +V E    GE    +IK   +     H    I   
Sbjct: 79  --DHPNIMKLFEILE----DSSSFYIVGELYTGGELFDEIIKRKRF---SEHDAARIIKQ 129

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +  G+ ++H + +I+H DLKPEN+LL S
Sbjct: 130 VFSGITYMH-KHNIVHRDLKPENILLES 156

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 42/166 (25%), Positives = 55/166 (33%), Gaps = 55/166 (33%)

Query: 306 KLVDFGNAC--WTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K++DFG +       +  + I T  Y  PEVL G  Y    D+WS   I + L       
Sbjct: 164 KIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYIL------- 215

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                               L G  P    F G+   D                    +V
Sbjct: 216 --------------------LSGTPP----FYGKNEYDILK-----------------RV 234

Query: 424 LIEKYDFSEKDANDMA----DFLVPILDFVPEKRPTAAQCLTHPWI 465
              KY F       ++    D +  +L F P  R TA QCL HPWI
Sbjct: 235 ETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWI 280

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 20/149 (13%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAEG 98
           RY  Q  LG G F  V L  D  T    A+KV    Q   +   E+ L E+++LKQ+   
Sbjct: 27  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 83

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICF 156
              D   ++KL + F+    +  +  +V E    GE    +I    +          I  
Sbjct: 84  ---DHPNIMKLYEFFE----DKGYFYLVGEVYTGGELFDEIISRKRF---SEVDAARIIR 133

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            +L G+ ++H +  I+H DLKPEN+LL S
Sbjct: 134 QVLSGITYMH-KNKIVHRDLKPENLLLES 161

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 39/166 (23%), Positives = 53/166 (31%), Gaps = 55/166 (33%)

Query: 306 KLVDFGNAC--WTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           +++DFG +      K+  + I T  Y  PEVL G  Y    D+WS   I + L       
Sbjct: 169 RIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYIL------- 220

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                               L G  P    F G    D                    KV
Sbjct: 221 --------------------LSGCPP----FNGANEYDILK-----------------KV 239

Query: 424 LIEKYDFSEKDANDMA----DFLVPILDFVPEKRPTAAQCLTHPWI 465
              KY F       ++    D +  +L +VP  R +A   L H WI
Sbjct: 240 EKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWI 285

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 22/183 (12%)

Query: 8   DRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTS 67
           D   ++DY    E            V+ G  +    Y +  +LG G F  V    +  T 
Sbjct: 19  DGPKINDYDKFYEDIWKKYVPQPVEVKQGSVYD--YYDILEELGSGAFGVVHRCVEKATG 76

Query: 68  HYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV 126
                K              +EI I+ Q+          ++ L D F+    +   + ++
Sbjct: 77  RVFVAKFINTPYPLDKYTVKNEISIMNQL------HHPKLINLHDAFE----DKYEMVLI 126

Query: 127 FEYL--GENLLTLIKYADYRGVPL--HMVKEICFHILVGLDHLHRELSIIHTDLKPENVL 182
            E+L  GE    +          +    V         GL H+H E SI+H D+KPEN++
Sbjct: 127 LEFLSGGELFDRIAA----EDYKMSEAEVINYMRQACEGLKHMH-EHSIVHLDIKPENIM 181

Query: 183 LMS 185
             +
Sbjct: 182 CET 184

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 31/167 (18%), Positives = 53/167 (31%), Gaps = 54/167 (32%)

Query: 306 KLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K++DFG A      +       T ++  PE++         D+W+   + + L +G    
Sbjct: 191 KIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG---L 247

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
            P +G++ D +                                             L  V
Sbjct: 248 SPFAGED-DLET--------------------------------------------LQNV 262

Query: 424 LIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
               ++F E      +  A DF+  +L   P KR T    L HPW+ 
Sbjct: 263 KRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLK 309

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 15/152 (9%)

Query: 37  DTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQI 95
           +   +   V    LG G    V   ++ +T    ALK+ Q         A  E+++  + 
Sbjct: 13  NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRA 67

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKE 153
           +   P     +V+++D +++     + + +V E L  GE L + I+    +        E
Sbjct: 68  S-QCPH----IVRIVDVYENLYAGRKCLLIVMECLDGGE-LFSRIQDRGDQAFTEREASE 121

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           I   I   + +LH  ++I H D+KPEN+L  S
Sbjct: 122 IMKSIGEAIQYLH-SINIAHRDVKPENLLYTS 152

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 73/201 (36%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDP 365
           KL DFG A                   E   G KY    D+WS   I + L  G   + P
Sbjct: 160 KLTDFGFA------------------KETT-GEKYDKSCDMWSLGVIMYILLCG---YPP 197

Query: 366 HSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI 425
              ++       +                                           ++ +
Sbjct: 198 FYSNHGLAISPGM-----------------------------------------KTRIRM 216

Query: 426 EKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQP 481
            +Y+F      + ++     +  +L   P +R T  + + HPWI       + +     P
Sbjct: 217 GQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIM------QSTKVPQTP 270

Query: 482 QDTGGSISDKNRREKDEREAM 502
             T   + +   R +D +E M
Sbjct: 271 LHTSRVLKEDKERWEDVKEEM 291

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 75.8 bits (187), Expect = 7e-15
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 19/154 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGD 99
            Y +  +LG G FS V            A  +   +K +    +    E +I + +    
Sbjct: 12  EYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLL---- 67

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH 157
                 +V+L D     G    H  ++F+ +  GE    ++    Y              
Sbjct: 68  --KHPNIVRLHDSISEEG----HHYLIFDLVTGGELFEDIVAREYY---SEADASHCIQQ 118

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
           IL  + H H ++ ++H +LKPEN+LL S +  + 
Sbjct: 119 ILEAVLHCH-QMGVVHRNLKPENLLLASKLKGAA 151

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 39/175 (22%), Positives = 50/175 (28%), Gaps = 63/175 (36%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRC-------PEVLLGSKYSTPADLWSFACICF 354
               KL DFG A     +   + Q             PEVL    Y  P DLW+   I +
Sbjct: 149 GAAVKLADFGLA----IEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILY 204

Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR 414
            L                           L+G  P    F        +           
Sbjct: 205 IL---------------------------LVGYPP----FWDEDQHRLYQ---------- 223

Query: 415 LRFWPLNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
                  ++    YDF           A D +  +L   P KR TAA+ L HPWI
Sbjct: 224 -------QIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWI 271

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 30/178 (16%)

Query: 37  DTFKNGRYVVQSK---LGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIK--- 90
           ++    R     +   LG         A D +T     + V    +     A+ ++K   
Sbjct: 70  ESELGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEV 129

Query: 91  -----ILKQIAEGDPDDKKCVVKLLDHFKHSG-------------PNGQHVCMVFEYLGE 132
                +     +         +   D  K                        ++  +  
Sbjct: 130 LRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQS 189

Query: 133 NLLTLIKYADYRG-----VPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           NL T  +           +  H   ++   ++  L  LH    ++HT L+P +++L  
Sbjct: 190 NLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH-YGLVHTYLRPVDIVLDQ 246

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 16/188 (8%), Positives = 35/188 (18%), Gaps = 61/188 (32%)

Query: 306 KLVDFGNAC----WTYKQFTNDIQTRQYRCPEVLLGSK-----YSTPADLWSFACICFEL 356
            L  F +                   +     +L   +      +   D W+     + +
Sbjct: 251 FLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWI 310

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
              D+   P++ D                                               
Sbjct: 311 WCADL---PNTDDA---------------------------------------------A 322

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSM 476
                 +     +  +     +   L   L +  E R    Q +  P        L  ++
Sbjct: 323 LGGSEWIFRSCKNIPQ----PVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTELSAAL 378

Query: 477 AATQPQDT 484
              Q    
Sbjct: 379 PLYQTDGE 386

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 16/148 (10%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSH-YVALKVQKSA--QHYTEAALDEIKILKQIAE 97
            G+Y V+  +  G    ++LA D   +   V LK    +        A+ E + L ++  
Sbjct: 79  AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVV- 137

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVC-MVFEYL-GENLLTLIKYADYRGVPLHMVKEIC 155
             P     +V++ +  +H+  +G  V  +V EY+ G++L         + +P+       
Sbjct: 138 -HPS----IVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKG----QKLPVAEAIAYL 188

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
             IL  L +LH    +++ DLKPEN++L
Sbjct: 189 LEILPALSYLHSI-GLVYNDLKPENIML 215

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 75.4 bits (185), Expect = 1e-14
 Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 16/145 (11%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQI--AEG 98
             ++ +  K+G G F  ++L  + QT+  VA+K++     + +  L E KI + +    G
Sbjct: 6   GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQ-LLYESKIYRILQGGTG 64

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
            P           + +  G  G +  +V + LG +L  L  +   R + L  V  +   +
Sbjct: 65  IP-----------NVRWFGVEGDYNVLVMDLLGPSLEDLFNFCS-RKLSLKTVLMLADQM 112

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
           +  ++ +H + S +H D+KP+N L+
Sbjct: 113 INRVEFVHSK-SFLHRDIKPDNFLM 136

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 9/146 (6%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDP 100
            G + +   +G G +  V+     +T    A+KV        E    EI +LK+ +    
Sbjct: 23  AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYS---- 78

Query: 101 DDKKCVVKLLDHF--KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFH 157
              + +      F  K+       + +V E+    ++  LIK      +    +  IC  
Sbjct: 79  -HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICRE 137

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           IL GL HLH+   +IH D+K +NVLL
Sbjct: 138 ILRGLSHLHQH-KVIHRDIKGQNVLL 162

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 46/213 (21%), Positives = 66/213 (30%), Gaps = 74/213 (34%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLL-----GSKYSTPADLWSFAC 351
           + KLVDFG +     Q    +  R        +  PEV+       + Y   +DLWS   
Sbjct: 167 EVKLVDFGVS----AQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGI 222

Query: 352 ICFELATGDV-LFDPHSGDNYDRDEDHLALMMELLGMMPRKIA---FGGRYSRDFFNRHG 407
              E+A G   L D H               M  L ++PR  A      ++S+ F     
Sbjct: 223 TAIEMAEGAPPLCDMHP--------------MRALFLIPRNPAPRLKSKKWSKKF----- 263

Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
                                            F+   L     +RP   Q + HP+I  
Sbjct: 264 -------------------------------QSFIESCLVKNHSQRPATEQLMKHPFIRD 292

Query: 468 GPRLLEPSMAATQPQDTGGSISDKNRREKDERE 500
            P   +  +      D     + K R EKDE E
Sbjct: 293 QPNERQVRIQLKDHID----RTKKKRGEKDETE 321

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 15/152 (9%)

Query: 37  DTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQI 95
           +   +   V    LG G    V   ++ +T    ALK+ Q         A  E+++  + 
Sbjct: 57  NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRA 111

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKE 153
           +   P     +V+++D +++     + + +V E L  GE L + I+    +        E
Sbjct: 112 S-QCPH----IVRIVDVYENLYAGRKCLLIVMECLDGGE-LFSRIQDRGDQAFTEREASE 165

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           I   I   + +LH  ++I H D+KPEN+L  S
Sbjct: 166 IMKSIGEAIQYLH-SINIAHRDVKPENLLYTS 196

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 39/211 (18%), Positives = 67/211 (31%), Gaps = 64/211 (30%)

Query: 306 KLVDFGNACWTYKQFTNDIQ------TRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           KL DFG A    K+ T+         T  Y  PEVL   KY    D+WS   I + L  G
Sbjct: 204 KLTDFGFA----KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 259

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              + P   ++       +                                         
Sbjct: 260 ---YPPFYSNHGLAISPGM----------------------------------------- 275

Query: 420 LNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPS 475
             ++ + +Y+F      + ++     +  +L   P +R T  + + HPWI       + +
Sbjct: 276 KTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIM------QST 329

Query: 476 MAATQPQDTGGSISDKNRREKDEREAMEVRV 506
                P  T   + +   R +D +E M   +
Sbjct: 330 KVPQTPLHTSRVLKEDKERWEDVKEEMTSAL 360

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
           +Y++   LG G F  V    +T +      K  K           EI IL          
Sbjct: 6   KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA------R 59

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPL--HMVKEICFHI 158
            + ++ L + F+    + + + M+FE++   + +   I         L    +      +
Sbjct: 60  HRNILHLHESFE----SMEELVMIFEFISGLD-IFERINT---SAFELNEREIVSYVHQV 111

Query: 159 LVGLDHLHRELSIIHTDLKPENVLLMS 185
              L  LH   +I H D++PEN++  +
Sbjct: 112 CEALQFLH-SHNIGHFDIRPENIIYQT 137

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 54/167 (32%)

Query: 306 KLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K+++FG A        F       +Y  PEV      ST  D+WS   + + L       
Sbjct: 144 KIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVL------- 196

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                               L G+ P    F    ++                      +
Sbjct: 197 --------------------LSGINP----FLAETNQQIIE-----------------NI 215

Query: 424 LIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
           +  +Y F E   K+ +  A DF+  +L    + R TA++ L HPW+ 
Sbjct: 216 MNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLK 262

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 36/162 (22%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--------------QKSAQHYTEAALDE 88
            Y    KLG G +  V L  +       A+KV               K+ + + E   +E
Sbjct: 37  SYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNE 96

Query: 89  IKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLI----KYADY 143
           I +LK +      D   ++KL D F+    + ++  +V E+  G  L   I    K+ + 
Sbjct: 97  ISLLKSL------DHPNIIKLFDVFE----DKKYFYLVTEFYEGGELFEQIINRHKFDEC 146

Query: 144 RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
                     I   IL G+ +LH + +I+H D+KPEN+LL +
Sbjct: 147 ------DAANIMKQILSGICYLH-KHNIVHRDIKPENILLEN 181

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 39/166 (23%), Positives = 57/166 (34%), Gaps = 55/166 (33%)

Query: 306 KLVDFGNAC--WTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K+VDFG +       +  + + T  Y  PEVL   KY+   D+WS   I + L       
Sbjct: 189 KIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYIL------- 240

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                               L G  P    FGG+  +D                    KV
Sbjct: 241 --------------------LCGYPP----FGGQNDQDIIK-----------------KV 259

Query: 424 LIEKYDFSEKD----ANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
              KY F   D    +++  + +  +L +   KR TA + L   WI
Sbjct: 260 EKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWI 305

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 28/150 (18%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPD 101
            Y V+  +G G +S         T+   A+K+  KS         +EI+IL +     P+
Sbjct: 23  GYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK----RDPTEEIEILLRYG-QHPN 77

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI----KYADYRGVPLHMVKEIC 155
               ++ L D +     +G++V +V E +  GE LL  I     +++           + 
Sbjct: 78  ----IITLKDVYD----DGKYVYVVTELMKGGE-LLDKILRQKFFSE------REASAVL 122

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           F I   +++LH    ++H DLKP N+L + 
Sbjct: 123 FTITKTVEYLH-AQGVVHRDLKPSNILYVD 151

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 38/171 (22%), Positives = 53/171 (30%), Gaps = 60/171 (35%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRC-------PEVLLGSKYSTPADLWSFACICFELAT 358
           ++ DFG A    KQ   +       C       PEVL    Y    D+WS   + + + T
Sbjct: 160 RICDFGFA----KQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLT 215

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
           G   F     D                   P +I                          
Sbjct: 216 GYTPFANGPDDT------------------PEEI-------------------------- 231

Query: 419 PLNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
            L ++   K+  S       +D A D +  +L   P +R TAA  L HPWI
Sbjct: 232 -LARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWI 281

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 20/148 (13%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIK-ILKQIAEGDPDD 102
                ++G G + +V       +   +A+K  +S          E K +L  +   D   
Sbjct: 24  LKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRS-----TVDEKEQKQLLMDL---DVVM 75

Query: 103 KKC----VVKLLDHFKHSGPNGQHVCMVFEYLG---ENLLTLIKYADYRGVPLHMVKEIC 155
           +      +V+        G       +  E +    +     +       +P  ++ +I 
Sbjct: 76  RSSDCPYIVQFYGALFREG----DCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKIT 131

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
              +  L+HL   L IIH D+KP N+LL
Sbjct: 132 LATVKALNHLKENLKIIHRDIKPSNILL 159

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 34/174 (19%), Positives = 51/174 (29%), Gaps = 64/174 (36%)

Query: 306 KLVDFG---NACWTYKQFTNDIQTRQYRCPEVLLGSK----YSTPADLWSFACICFELAT 358
           KL DFG       +  + T D   R Y  PE +  S     Y   +D+WS     +ELAT
Sbjct: 166 KLCDFGISGQLVDSIAK-TRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELAT 224

Query: 359 GDV-LFDPHSGDNYDRDEDHLALMMELLGMMPR------KIAFGGRYSRDFFNRHGDLRH 411
           G       +S             + + L  + +        +    +S  F         
Sbjct: 225 GRFPYPKWNS-------------VFDQLTQVVKGDPPQLSNSEEREFSPSF--------- 262

Query: 412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                                       +F+   L     KRP   + L HP+I
Sbjct: 263 ---------------------------INFVNLCLTKDESKRPKYKELLKHPFI 289

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 17/146 (11%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
                +LG G +  V       +   +A+K  ++          E K L    + D   +
Sbjct: 9   LEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRA-----TVNSQEQKRLLM--DLDISMR 61

Query: 104 KC----VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEICFH 157
                  V         G     V +  E +  +L    K    +G  +   ++ +I   
Sbjct: 62  TVDCPFTVTFYGALFREG----DVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVS 117

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           I+  L+HLH +LS+IH D+KP NVL+
Sbjct: 118 IVKALEHLHSKLSVIHRDVKPSNVLI 143

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 65/173 (37%)

Query: 306 KLVDFGNACWTYKQFTNDIQ------TRQYRCPEVLLG----SKYSTPADLWSFACICFE 355
           K+ DFG +        +D+        + Y  PE +        YS  +D+WS      E
Sbjct: 150 KMCDFGIS----GYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIE 205

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRK---IAFGGRYSRDFFNRHGDLRHI 412
           LA     F P+                + L  +  +        ++S +F +        
Sbjct: 206 LAILR--F-PYDSWGTP---------FQQLKQVVEEPSPQLPADKFSAEFVD-------- 245

Query: 413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
               F   ++ L        K+                ++RPT  + + HP+ 
Sbjct: 246 ----F--TSQCLK-------KN---------------SKERPTYPELMQHPFF 270

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 38/159 (23%), Positives = 60/159 (37%), Gaps = 23/159 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILKQI 95
            Y +  +LG G F+ V    +  T    A K                E    E+ IL+Q+
Sbjct: 13  FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQV 72

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKE 153
                     V+ L D ++    N   V ++ E +  GE L   +   +   +       
Sbjct: 73  ------LHHNVITLHDVYE----NRTDVVLILELVSGGE-LFDFLAQKES--LSEEEATS 119

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD 192
               IL G+++LH    I H DLKPEN++L+    P   
Sbjct: 120 FIKQILDGVNYLH-TKKIAHFDLKPENIMLLDKNIPIPH 157

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 56.1 bits (136), Expect = 9e-09
 Identities = 38/167 (22%), Positives = 54/167 (32%), Gaps = 54/167 (32%)

Query: 306 KLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           KL+DFG A       +F N   T ++  PE++        AD+WS   I + L +G    
Sbjct: 159 KLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG---A 215

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
            P  GD                                                  L  +
Sbjct: 216 SPFLGDTKQET---------------------------------------------LANI 230

Query: 424 LIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
               YDF E      +++A DF+  +L     KR T  + L HPWI 
Sbjct: 231 TSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWIT 277

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 27/155 (17%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPDD 102
            +    LG G FS        +++   A+K+  K  +  T+    EI  LK       + 
Sbjct: 13  DLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQ---KEITALKLC-----EG 64

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI----KYADYRGVPLHMVKEICF 156
              +VKL + F     +  H  +V E L  GE L   I     +++           I  
Sbjct: 65  HPNIVKLHEVFH----DQLHTFLVMELLNGGE-LFERIKKKKHFSE------TEASYIMR 113

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
            ++  + H+H ++ ++H DLKPEN+L     D  +
Sbjct: 114 KLVSAVSHMH-DVGVVHRDLKPENLLFTDENDNLE 147

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 31/172 (18%), Positives = 51/172 (29%), Gaps = 56/172 (32%)

Query: 306 KLVDFGNACWTYKQFTNDIQ-------TRQYRCPEVLLGSKYSTPADLWSFACICFELAT 358
           K++DFG A    +    D Q       T  Y  PE+L  + Y    DLWS   I + + +
Sbjct: 149 KIIDFGFA----RLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLS 204

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
           G     P    +          +M+                                   
Sbjct: 205 G---QVPFQSHDRSLTCTSAVEIMK----------------------------------- 226

Query: 419 PLNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
              K+    + F     K+ +  A D +  +L   P KR   +    + W+ 
Sbjct: 227 ---KIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQ 275

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 72.0 bits (177), Expect = 6e-14
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 16/144 (11%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
                ++G G    VW     +T H +A+K  +          +E K +    + D   K
Sbjct: 27  LENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRR-----SGNKEENKRILM--DLDVVLK 79

Query: 104 KC----VVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
                 +V+    F  +      V +  E +G     L K      +P  ++ ++   I+
Sbjct: 80  SHDCPYIVQCFGTFITNT----DVFIAMELMGTCAEKLKKRMQ-GPIPERILGKMTVAIV 134

Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
             L +L  +  +IH D+KP N+LL
Sbjct: 135 KALYYLKEKHGVIHRDVKPSNILL 158

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 35/170 (20%), Positives = 47/170 (27%), Gaps = 53/170 (31%)

Query: 304 KCKLVDFG---NACWTYKQFTNDIQTRQYRCPEVL-----LGSKYSTPADLWSFACICFE 355
           + KL DFG          +         Y  PE +         Y   AD+WS      E
Sbjct: 163 QIKLCDFGISGRLVDDKAK-DRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVE 221

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL 415
           LATG     P+                E+L  + ++                        
Sbjct: 222 LATGQF---PYKNCK---------TDFEVLTKVLQEEP---------------------- 247

Query: 416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
              PL   L     FS     D   F+   L     KRP   + L H +I
Sbjct: 248 ---PL---LPGHMGFSG----DFQSFVKDCLTKDHRKRPKYNKLLEHSFI 287

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 23/159 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILKQI 95
            Y +  +LG G F+ V    +  T    A K                E    E+ IL+Q+
Sbjct: 13  FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQV 72

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKE 153
                     ++ L D ++    N   V ++ E +  GE L   +   +   +       
Sbjct: 73  ------LHPNIITLHDVYE----NRTDVVLILELVSGGE-LFDFLAQKES--LSEEEATS 119

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD 192
               IL G+++LH    I H DLKPEN++L+    P   
Sbjct: 120 FIKQILDGVNYLH-TKKIAHFDLKPENIMLLDKNIPIPH 157

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 38/167 (22%), Positives = 56/167 (33%), Gaps = 54/167 (32%)

Query: 306 KLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           KL+DFG A       +F N   T ++  PE++        AD+WS   I + L +G    
Sbjct: 159 KLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG---A 215

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
            P  GD   ++                                             L  +
Sbjct: 216 SPFLGDT-KQET--------------------------------------------LANI 230

Query: 424 LIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
               YDF E      +++A DF+  +L     KR T  + L HPWI 
Sbjct: 231 TAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWIT 277

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 23/159 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILKQI 95
            Y    +LG G F+ V    +  T    A K                E    E+ ILK+I
Sbjct: 12  YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI 71

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKE 153
                     V+ L + ++    N   V ++ E +  GE L   +   +   +      E
Sbjct: 72  ------QHPNVITLHEVYE----NKTDVILILELVAGGE-LFDFLAEKES--LTEEEATE 118

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD 192
               IL G+ +LH  L I H DLKPEN++L+    P   
Sbjct: 119 FLKQILNGVYYLH-SLQIAHFDLKPENIMLLDRNVPKPR 156

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 54/167 (32%)

Query: 306 KLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K++DFG A       +F N   T ++  PE++        AD+WS   I + L +G    
Sbjct: 158 KIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG---A 214

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
            P  GD   ++                                             L  V
Sbjct: 215 SPFLGDT-KQET--------------------------------------------LANV 229

Query: 424 LIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
               Y+F +    + + +A DF+  +L   P+KR T    L HPWI 
Sbjct: 230 SAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIK 276

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 72.9 bits (179), Expect = 8e-14
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 24/196 (12%)

Query: 2   AEDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLA 61
            +              ++   + +++     V +        Y +  +LG G F  V   
Sbjct: 117 EQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRV 176

Query: 62  WDTQTSHYVALK-VQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG 120
            +  T +  A K V    +   E    EI+ +  +          +V L D F+    + 
Sbjct: 177 TERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL------RHPTLVNLHDAFE----DD 226

Query: 121 QHVCMVFEYL--GENLLTLIKYADYRGVPLHM----VKEICFHILVGLDHLHRELSIIHT 174
             + M++E++  GE L   +  AD       M      E    +  GL H+H E + +H 
Sbjct: 227 NEMVMIYEFMSGGE-LFEKV--ADEHN---KMSEDEAVEYMRQVCKGLCHMH-ENNYVHL 279

Query: 175 DLKPENVLLMSMIDPS 190
           DLKPEN++  +     
Sbjct: 280 DLKPENIMFTTKRSNE 295

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 34/167 (20%), Positives = 53/167 (31%), Gaps = 54/167 (32%)

Query: 306 KLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           KL+DFG        +       T ++  PEV  G       D+WS   + + L       
Sbjct: 297 KLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYIL------- 349

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                               L G+ P    FGG       N    LR+++          
Sbjct: 350 --------------------LSGLSP----FGGE------NDDETLRNVKSC-------- 371

Query: 424 LIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
               ++  +      ++   DF+  +L   P  R T  Q L HPW+ 
Sbjct: 372 ---DWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLT 415

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 71.8 bits (176), Expect = 8e-14
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 57/213 (26%)

Query: 18  EDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--- 74
                   R   Y         +  +Y ++  +G G +  V +A + QT    A+K+   
Sbjct: 3   HHHHHSSGRENLYFQGGSLLELQK-KYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNK 61

Query: 75  ---QKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL- 130
              ++      E    E++++K++          + +L + ++    + Q++C+V E   
Sbjct: 62  NKIRQINPKDVERIKTEVRLMKKL------HHPNIARLYEVYE----DEQYICLVMELCH 111

Query: 131 -GENLLTLIKYADYRGVPLHM-------------------------------------VK 152
            G  L  L  + D       M                                     + 
Sbjct: 112 GGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLIS 171

Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
            I   I   L +LH    I H D+KPEN L  +
Sbjct: 172 NIMRQIFSALHYLH-NQGICHRDIKPENFLFST 203

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 35/178 (19%), Positives = 56/178 (31%), Gaps = 61/178 (34%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRC-------PEVLLGS--KYSTPADLWSFACI 352
             + KLVDFG +   YK    +      +        PEVL  +   Y    D WS   +
Sbjct: 206 SFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVL 265

Query: 353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI 412
              L  G V F          ++                                     
Sbjct: 266 LHLLLMGAVPF-------PGVNDADT---------------------------------- 284

Query: 413 RRLRFWPLNKVLIEKYDFSEKDANDMA----DFLVPILDFVPEKRPTAAQCLTHPWIN 466
                  +++VL +K  F   + N ++    D L  +L+   ++R  A + L HPWI+
Sbjct: 285 -------ISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWIS 335

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 71.6 bits (176), Expect = 9e-14
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 27/150 (18%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPD 101
            + V+S+LG G  S V+      T    ALKV +K+     +    EI +L ++      
Sbjct: 54  FFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK--KIVRTEIGVLLRL------ 105

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLI----KYADYRGVPLHMVKEIC 155
               ++KL + F+        + +V E +  GE L   I     Y++          +  
Sbjct: 106 SHPNIIKLKEIFE----TPTEISLVLELVTGGE-LFDRIVEKGYYSE------RDAADAV 154

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             IL  + +LH E  I+H DLKPEN+L  +
Sbjct: 155 KQILEAVAYLH-ENGIVHRDLKPENLLYAT 183

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 36/171 (21%), Positives = 53/171 (30%), Gaps = 53/171 (30%)

Query: 302 DLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           D   K+ DFG +     Q        T  Y  PE+L G  Y    D+WS   I + L   
Sbjct: 187 DAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYIL--- 243

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
                                   L G  P             F      + +       
Sbjct: 244 ------------------------LCGFEP-------------FYDERGDQFM------- 259

Query: 420 LNKVLIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWIN 466
             ++L  +Y F      + +  A D +  ++   P+KR T  Q L HPW+ 
Sbjct: 260 FRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVT 310

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 16/147 (10%)

Query: 43  RYVVQSK-LGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDP 100
            Y +  + LG G    V   +  +T    ALK+   S       A  E+    Q +    
Sbjct: 29  DYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQAS---- 79

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHI 158
                +V +LD +++     + + ++ E +  GE L + I+    +        EI   I
Sbjct: 80  -GGPHIVCILDVYENMHHGKRCLLIIMECMEGGE-LFSRIQERGDQAFTEREAAEIMRDI 137

Query: 159 LVGLDHLHRELSIIHTDLKPENVLLMS 185
              +  LH   +I H D+KPEN+L  S
Sbjct: 138 GTAIQFLH-SHNIAHRDVKPENLLYTS 163

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 63/216 (29%)

Query: 306 KLVDFGNACWTYKQFTND-----IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGD 360
           KL DFG A    K+ T +       T  Y  PEVL   KY    D+WS   I + L  G 
Sbjct: 171 KLTDFGFA----KETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG- 225

Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL 420
             F P   +        +                                          
Sbjct: 226 --FPPFYSNTGQAISPGM-----------------------------------------K 242

Query: 421 NKVLIEKYDFSEK---DANDMA-DFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSM 476
            ++ + +Y F      + ++ A   +  +L   P +R T  Q + HPWIN      +  +
Sbjct: 243 RRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWIN------QSMV 296

Query: 477 AATQPQDTGGSISDKNRREKDEREAMEVRVGNIAID 512
               P  T   + +      + +E M   +  + +D
Sbjct: 297 VPQTPLHTARVLQEDKDHWDEVKEEMTSALATMRVD 332

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 23/160 (14%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPD 101
             Y +   L  G F+ + L    + + + ALK  + +    +    +    K   +   D
Sbjct: 31  NDYRIIRTLNQGKFNKIILC--EKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYD 88

Query: 102 DKKCVVKLLDHFKHSGPN----------GQHVCMVFEYL--GENLLTLI------KYADY 143
           D K  ++++   K+                 V +++EY+     +L              
Sbjct: 89  DFKNELQIITDIKN--EYCLTCEGIITNYDEVYIIYEYMENDS-ILKFDEYFFVLDKNYT 145

Query: 144 RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +P+ ++K I   +L    ++H E +I H D+KP N+L+
Sbjct: 146 CFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILM 185

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 30/177 (16%), Positives = 51/177 (28%), Gaps = 38/177 (21%)

Query: 306 KLVDFGNACWTYKQFTNDIQTR----QYRCPEVLLGSK--YSTPADLWSFACICFELATG 359
           KL DFG    +       I+      ++  PE             D+WS     + +   
Sbjct: 192 KLSDFG---ESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYN 248

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
            V F           +  L   +EL       I            R  ++ +      + 
Sbjct: 249 VVPFS---------LKISL---VELF----NNI------------RTKNIEYPLDRNHFL 280

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI-NVGPRLLEPS 475
                 +    +   +N+  DFL   L   P +R T+   L H W+ +     L   
Sbjct: 281 YPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADTNIEDLREF 337

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 20/150 (13%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK--SAQHYTEAALDEIKILKQIAEGDP 100
            Y +Q  +G G  + V  A+       VA+K       Q   +  L EI+ + Q      
Sbjct: 16  DYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQC----- 70

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKE------ 153
                +V     F         + +V + L   ++L +IK+   +G     V +      
Sbjct: 71  -HHPNIVSYYTSFVV----KDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIAT 125

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           I   +L GL++LH+    IH D+K  N+LL
Sbjct: 126 ILREVLEGLEYLHKN-GQIHRDVKAGNILL 154

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 37/171 (21%), Positives = 57/171 (33%), Gaps = 51/171 (29%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQYR-------C---PEVLL-GSKYSTPADLWSFACICF 354
           ++ DFG + +       DI   + R       C   PEV+     Y   AD+WSF     
Sbjct: 161 QIADFGVSAFLAT--GGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAI 218

Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR 414
           ELATG     P+               M++L +  +                        
Sbjct: 219 ELATGA---APYH------KYPP----MKVLMLTLQNDP--------------------- 244

Query: 415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
               P  +  ++  +  +K        +   L   PEKRPTAA+ L H + 
Sbjct: 245 ----PSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFF 291

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 26/174 (14%)

Query: 16  TSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-- 73
           T ++EG     +         +         Q ++G G F  V    D QT    A+K  
Sbjct: 34  TEDNEGVLLTEKLKPVDYEYREEVH--WMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKV 91

Query: 74  -VQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-G 131
            ++           +E+     +          +V L    +     G  V +  E L G
Sbjct: 92  RLEVFRV-------EELVACAGL------SSPRIVPLYGAVRE----GPWVNIFMELLEG 134

Query: 132 ENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
            +L  LIK      +P           L GL++LH    I+H D+K +NVLL S
Sbjct: 135 GSLGQLIK--QMGCLPEDRALYYLGQALEGLEYLHTR-RILHGDVKADNVLLSS 185

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 23/174 (13%), Positives = 39/174 (22%), Gaps = 61/174 (35%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQYRC------------PEVLLGSKYSTPADLWSFAC 351
           +  L DFG+A         D   +                PEV++G       D+WS  C
Sbjct: 189 RAALCDFGHA----LCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCC 244

Query: 352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH 411
           +   +  G     P +            L +++    P         +            
Sbjct: 245 MMLHMLNGCH---PWT------QYFRGPLCLKIASEPPPIREIPPSCAPLT--------- 286

Query: 412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                                      A  +   L   P  R +A +       
Sbjct: 287 ---------------------------AQAIQEGLRKEPVHRASAMELRRKVGK 313

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 20/151 (13%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAE--- 97
           + RY +   LG+G  S V LA D +    VA+KV ++     + A D    L+   E   
Sbjct: 11  SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRA-----DLARDPSFYLRFRREAQN 65

Query: 98  ----GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVK 152
                 P     +V + D  +   P G    +V EY+ G  L  ++       +      
Sbjct: 66  AAALNHP----AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH--TEGPMTPKRAI 119

Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           E+       L+  H+   IIH D+KP N+++
Sbjct: 120 EVIADACQALNFSHQ-NGIIHRDVKPANIMI 149

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 20/142 (14%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPDDKKCVV 107
            LG G F  V    +T T   +A K+ +       E   +EI ++ Q+      D   ++
Sbjct: 96  ILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQL------DHANLI 149

Query: 108 KLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPL--HMVKEICFHILVGLD 163
           +L D F+    +   + +V EY+  GE    +I         L           I  G+ 
Sbjct: 150 QLYDAFE----SKNDIVLVMEYVDGGELFDRIID----ESYNLTELDTILFMKQICEGIR 201

Query: 164 HLHRELSIIHTDLKPENVLLMS 185
           H+H ++ I+H DLKPEN+L ++
Sbjct: 202 HMH-QMYILHLDLKPENILCVN 222

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 56/195 (28%)

Query: 306 KLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K++DFG A      ++   +  T ++  PEV+     S P D+WS   I + L +G    
Sbjct: 229 KIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSG---L 285

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
            P  GDN D +                                             LN +
Sbjct: 286 SPFLGDN-DAET--------------------------------------------LNNI 300

Query: 424 LIEKYDFSE---KDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAAT 479
           L  ++D  +   +D ++ A +F+  +L      R +A++ L HPW++     L   ++A 
Sbjct: 301 LACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLS--DHKLHSRLSAQ 358

Query: 480 QPQDTGGSISDKNRR 494
           + ++ G    D   +
Sbjct: 359 KKKNRGSDAQDFVTK 373

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 70.4 bits (172), Expect = 3e-13
 Identities = 27/190 (14%), Positives = 56/190 (29%), Gaps = 27/190 (14%)

Query: 22  TEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV------- 74
           T  +  G    V      +    V  + LG         A D +T     + V       
Sbjct: 53  TSLWNTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERP 112

Query: 75  QKSAQHYTEAALDEIKILKQI-AEGDPDDKKCVVKLLDHFKHSG-------------PNG 120
             +A    +  +  +++L+ I  +         +   D  K                   
Sbjct: 113 PSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWV 172

Query: 121 QHVCMVFEYLGENLLTLIKYADYRG-----VPLHMVKEICFHILVGLDHLHRELSIIHTD 175
                ++  +  NL T  +           +  H   ++   ++  L  LH    ++HT 
Sbjct: 173 LSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH-YGLVHTY 231

Query: 176 LKPENVLLMS 185
           L+P +++L  
Sbjct: 232 LRPVDIVLDQ 241

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 53.5 bits (128), Expect = 8e-08
 Identities = 21/188 (11%), Positives = 43/188 (22%), Gaps = 68/188 (36%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRCPEVLL-----------GSKYSTPADLWSFACICF 354
            L  F +      +  + + +R +  PE+              +  +   D W+   + +
Sbjct: 246 FLTGFEHLVRDGARVVSSV-SRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIY 304

Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR 414
            +   D+   P + D                      I                      
Sbjct: 305 WIWCADL---PITKDA--------------ALGGSEWI---------------------- 325

Query: 415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEP 474
            R            +  +     +   L   L +  E R    Q +  P        L  
Sbjct: 326 FRSCK---------NIPQ----PVRALLEGFLRYPKEDRLLPLQAMETPEY----EQLRT 368

Query: 475 SMAATQPQ 482
            ++A  P 
Sbjct: 369 ELSAALPL 376

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 24/157 (15%)

Query: 35  MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQ 94
           M     N RY +  KLG G  STV+LA DT  +  VA+K              E  + + 
Sbjct: 4   MIGKIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFI-----PPREKEETLKRF 58

Query: 95  IAE-------GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGV 146
             E          +    +V ++D             +V EY+ G  L   I+   +  +
Sbjct: 59  EREVHNSSQLSHQN----IVSMID----VDEEDDCYYLVMEYIEGPTLSEYIE--SHGPL 108

Query: 147 PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
            +         IL G+ H H    I+H D+KP+N+L+
Sbjct: 109 SVDTAINFTNQILDGIKHAHDM-RIVHRDIKPQNILI 144

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALD----EIKILKQIA 96
           G+Y++   LG G +  V    D++T    A+K+ +K               EI++L+++ 
Sbjct: 5   GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRL- 63

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICF 156
                  K V++L+D         Q + MV EY    +  ++     +  P+        
Sbjct: 64  -----RHKNVIQLVDVL--YNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFC 116

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            ++ GL++LH    I+H D+KP N+LL
Sbjct: 117 QLIDGLEYLHS-QGIVHKDIKPGNLLL 142

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 36/188 (19%), Positives = 56/188 (29%), Gaps = 57/188 (30%)

Query: 306 KLVDFGNACWTYKQFTND--IQTRQ----YRCPEVLLGSK-YSTP-ADLWSFACICFELA 357
           K+   G A      F  D   +T Q    ++ PE+  G   +S    D+WS     + + 
Sbjct: 149 KISALGVAEA-LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNIT 207

Query: 358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF 417
           TG   F+   GDN          + +L       I   G Y                +  
Sbjct: 208 TGLYPFE---GDN----------IYKLF----ENI-GKGSY---------------AIPG 234

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMA 477
                               ++D L  +L++ P KR +  Q   H W        E  + 
Sbjct: 235 D-----------CGP----PLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPPAEAPVP 279

Query: 478 ATQPQDTG 485
                DT 
Sbjct: 280 IPPSPDTK 287

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 68.4 bits (168), Expect = 6e-13
 Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 32/166 (19%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV------QKSAQHYTEAALDEIKILKQI 95
            +Y ++ ++G G +  V LA++   + Y A+KV       + A           +     
Sbjct: 13  NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGG 72

Query: 96  AEGDPDDKK------CVVKLLDHFKH--------SGPNGQHVCMVFEYL--GENLLTLIK 139
                   +       ++K LDH  +          PN  H+ MVFE +  G  ++ +  
Sbjct: 73  CIQPRGPIEQVYQEIAILKKLDH-PNVVKLVEVLDDPNEDHLYMVFELVNQGP-VMEVPT 130

Query: 140 YADYRGVPLHMVKEICFH--ILVGLDHLHRELSIIHTDLKPENVLL 183
                  PL   +   +   ++ G+++LH    IIH D+KP N+L+
Sbjct: 131 ----LK-PLSEDQARFYFQDLIKGIEYLHY-QKIIHRDIKPSNLLV 170

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 36/179 (20%), Positives = 54/179 (30%), Gaps = 58/179 (32%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQ------YRCPEVLLGSK--YSTP-ADLW 347
           LL   D   K+ DFG +        +D           +  PE L  ++  +S    D+W
Sbjct: 168 LLVGEDGHIKIADFGVSNE---FKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVW 224

Query: 348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG 407
           +     +    G   F          DE     +M L      KI            +  
Sbjct: 225 AMGVTLYCFVFGQCPFM---------DER----IMCLH----SKI------------KSQ 255

Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
            L         P         D +E    D+ D +  +LD  PE R    +   HPW+ 
Sbjct: 256 AL----EFPDQP---------DIAE----DLKDLITRMLDKNPESRIVVPEIKLHPWVT 297

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 24/153 (15%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD-------EIKILKQ 94
            +Y V   LG G F +V+       +  VA+K  +  +      L        E+ +LK+
Sbjct: 43  SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 102

Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEY---LGENLLTLIKYADYRG-VPLHM 150
           ++ G       V++LLD F+          ++ E    + +    L  +   RG +   +
Sbjct: 103 VSSGFSG----VIRLLDWFE----RPDSFVLILERPEPVQD----LFDFITERGALQEEL 150

Query: 151 VKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
            +   + +L  + H H    ++H D+K EN+L+
Sbjct: 151 ARSFFWQVLEAVRHCHN-CGVLHRDIKDENILI 182

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 34/193 (17%), Positives = 55/193 (28%), Gaps = 56/193 (29%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQ-TRQYRCPEVLLGSKYS-TPADLWSFACICF 354
           L+     + KL+DFG+          D   TR Y  PE +   +Y    A +WS   + +
Sbjct: 181 LIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLY 240

Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR 414
           ++  GD+ F+          +               +I                +R    
Sbjct: 241 DMVCGDIPFE---------HD--------------EEI----------------IRGQVF 261

Query: 415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEP 474
            R              S     +    +   L   P  RPT  +   HPW+       E 
Sbjct: 262 FRQR-----------VSS----ECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQET 306

Query: 475 SMAATQPQDTGGS 487
           +         G S
Sbjct: 307 AEIHLHSLSPGPS 319

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 23/157 (14%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSH--------YVALKVQKSAQHYTEAALDEIKIL 92
             ++ ++S     +   ++ A  T T            +LK+            +E    
Sbjct: 41  GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRL----FNEQNFF 96

Query: 93  KQIAEGDPDDKKCVVKLLDH-----FKHSGPN-GQHVCMVFEYLGENLLTLIKYADYRGV 146
           ++ A+    +K   +              G +  ++  +V   LG +L + +  +    +
Sbjct: 97  QRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVL 156

Query: 147 PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
               V ++   +L  L+ LH E   +H ++  EN+ +
Sbjct: 157 SERSVLQVACRLLDALEFLH-ENEYVHGNVTAENIFV 192

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 12/144 (8%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGD 99
           N  + +  +LG G F  V+ A + +T    A KV +  ++   E  + EI+IL       
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATC---- 73

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
             D   +VKLL  + H       + ++ E+     +  I     RG+    ++ +C  +L
Sbjct: 74  --DHPYIVKLLGAYYH----DGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQML 127

Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
             L+ LH +  IIH DLK  NVL+
Sbjct: 128 EALNFLHSK-RIIHRDLKAGNVLM 150

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 69/178 (38%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLL-----GSKYSTPADLWSFAC 351
             +L DFG +     +    +Q R        +  PEV++      + Y   AD+WS   
Sbjct: 155 DIRLADFGVSA----KNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGI 210

Query: 352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPR----KIAFGGRYSRDFFNRHG 407
              E+A  +    PH   N           M +L  + +     +    ++S +F     
Sbjct: 211 TLIEMAQIE---PPHHELN----------PMRVLLKIAKSDPPTLLTPSKWSVEF----- 252

Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                                           DFL   LD  PE RP+AAQ L HP++
Sbjct: 253 -------------------------------RDFLKIALDKNPETRPSAAQLLEHPFV 279

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 20/149 (13%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIA 96
              +    ++G G F  V+ A D + S  VA+K      K +    +  + E++ L+++ 
Sbjct: 53  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL- 111

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEI 154
                     ++    +           +V EY   +   L++       PL    +  +
Sbjct: 112 -----RHPNTIQYRGCYLR----EHTAWLVMEYCLGSASDLLE---VHKKPLQEVEIAAV 159

Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
               L GL +LH   ++IH D+K  N+LL
Sbjct: 160 THGALQGLAYLHSH-NMIHRDVKAGNILL 187

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 17/148 (11%)

Query: 42  GRYVVQSKLGWGH--FSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIA 96
           G Y + + +G G     TV LA    T  YV ++    +  +         E+ + K   
Sbjct: 25  GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLF- 83

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEIC 155
                +   +V     F         + +V  ++   +   LI      G+    +  I 
Sbjct: 84  -----NHPNIVPYRATFIA----DNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYIL 134

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
             +L  LD++H     +H  +K  ++L+
Sbjct: 135 QGVLKALDYIHHM-GYVHRSVKASHILI 161

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 39/231 (16%), Positives = 59/231 (25%), Gaps = 49/231 (21%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQYRC--------------PEVLLGSK--YSTPADLW 347
           K  L    +         +  Q ++                 PEVL  +   Y   +D++
Sbjct: 166 KVYLSGLRSNL----SMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIY 221

Query: 348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG 407
           S      ELA G V   P        D     +++E L      +        +      
Sbjct: 222 SVGITACELANGHV---PFK------DMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSP 272

Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFV-------PEKRPTAAQCL 460
                       L        +           F      FV       P+ RP+A+  L
Sbjct: 273 SRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLL 332

Query: 461 THPWI--------NVGPRLLEPSMA-----ATQPQDTGGSISDKNRREKDE 498
            H +            P LL P         +Q QD  G        E+ E
Sbjct: 333 NHSFFKQIKRRASEALPELLRPVTPITNFEGSQSQDHSGIFGLVTNLEELE 383

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 22/156 (14%)

Query: 35  MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALD-EIK 90
           + D     RYV    LG G F+  +   D  T    A K+       + +    +  EI 
Sbjct: 8   LVDPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEIS 67

Query: 91  ILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRG-VP 147
           I + +        + VV     F+ +      V +V E          L++    R  + 
Sbjct: 68  IHRSL------AHQHVVGFHGFFEDN----DFVFVVLELCRRRS----LLELHKRRKALT 113

Query: 148 LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
               +     I++G  +LHR   +IH DLK  N+ L
Sbjct: 114 EPEARYYLRQIVLGCQYLHR-NRVIHRDLKLGNLFL 148

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 36/188 (19%), Positives = 54/188 (28%), Gaps = 61/188 (32%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRC-------PEVLLGSKYSTPADLWSFACICFELAT 358
           K+ DFG A     +   D + ++  C       PEVL    +S   D+WS  CI + L  
Sbjct: 155 KIGDFGLAT----KVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 210

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
           G   F+                  E       +I     YS                   
Sbjct: 211 GKPPFE---------TSCL----KETY----LRI-KKNEYS------------------I 234

Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG--PRLLEPSM 476
           P           +       A  +  +L   P  RPT  + L   +   G  P  L  + 
Sbjct: 235 P--------KHINP----VAASLIQKMLQTDPTARPTINELLNDEFFTSGYIPARLPITC 282

Query: 477 AATQPQDT 484
               P+ +
Sbjct: 283 LTIPPRFS 290

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 28/148 (18%), Positives = 42/148 (28%), Gaps = 20/148 (13%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIA 96
           NGRY +    G       W A DT     VAL              +  L     L +I 
Sbjct: 30  NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRI- 88

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEIC 155
              P     V ++LD             +V E++ G +L  +                  
Sbjct: 89  -DKP----GVARVLD----VVHTRAGGLVVAEWIRGGSLQEVAD----TSPSPVGAIRAM 135

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
             +    D  HR   +  +   P  V +
Sbjct: 136 QSLAAAADAAHRA-GVALSIDHPSRVRV 162

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 22/156 (14%)

Query: 35  MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALD-EIK 90
           + D     RYV    LG G F+  +   D  T    A K+       + +    +  EI 
Sbjct: 34  LVDPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEIS 93

Query: 91  ILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRG-VP 147
           I + +        + VV     F+ +      V +V E          L++    R  + 
Sbjct: 94  IHRSL------AHQHVVGFHGFFEDN----DFVFVVLELCRRRS----LLELHKRRKALT 139

Query: 148 LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
               +     I++G  +LHR   +IH DLK  N+ L
Sbjct: 140 EPEARYYLRQIVLGCQYLHR-NRVIHRDLKLGNLFL 174

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 36/186 (19%), Positives = 53/186 (28%), Gaps = 61/186 (32%)

Query: 306 KLVDFGNACWTYKQFTNDIQTRQYRC-------PEVLLGSKYSTPADLWSFACICFELAT 358
           K+ DFG A     +   D + ++  C       PEVL    +S   D+WS  CI + L  
Sbjct: 181 KIGDFGLAT----KVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 236

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
           G   F+                  E       +I     YS                   
Sbjct: 237 GKPPFE---------TSCL----KETY----LRI-KKNEYS------------------I 260

Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG--PRLLEPSM 476
           P           +       A  +  +L   P  RPT  + L   +   G  P  L  + 
Sbjct: 261 P--------KHINP----VAASLIQKMLQTDPTARPTINELLNDEFFTSGYIPARLPITC 308

Query: 477 AATQPQ 482
               P+
Sbjct: 309 LTIPPR 314

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK-SAQHYTEAALDEIKILKQIAEGD 99
             +Y    K+G G   TV+ A D  T   VA++      Q   E  ++EI ++++     
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN---- 74

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEICFH 157
                 +V  LD +      G  + +V EYL    LT +         +    +  +C  
Sbjct: 75  --KNPNIVNYLDSYLV----GDELWVVMEYLAGGSLTDV----VTETCMDEGQIAAVCRE 124

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
            L  L+ LH    +IH D+K +N+LL
Sbjct: 125 CLQALEFLHSN-QVIHRDIKSDNILL 149

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 32/173 (18%), Positives = 52/173 (30%), Gaps = 64/173 (36%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLLGSKYSTPADLWSFACICFEL 356
             KL DFG       Q T +   R        +  PEV+    Y    D+WS   +  E+
Sbjct: 154 SVKLTDFGFC----AQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM 209

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPR----KIAFGGRYSRDFFNRHGDLRHI 412
             G+    P+  +N           +  L ++      ++    + S  F          
Sbjct: 210 IEGEP---PYLNEN----------PLRALYLIATNGTPELQNPEKLSAIF---------- 246

Query: 413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                                      DFL   L+   EKR +A + L H ++
Sbjct: 247 --------------------------RDFLNRCLEMDVEKRGSAKELLQHQFL 273

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 17/146 (11%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEG 98
              +    K+G G F  V+   D +T   VA+K+   + A+   E    EI +L Q    
Sbjct: 21  EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQC--- 77

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFH 157
              D   V K    +         + ++ EYL G + L L++      +    +  I   
Sbjct: 78  ---DSPYVTKYYGSYLK----DTKLWIIMEYLGGGSALDLLE---PGPLDETQIATILRE 127

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           IL GLD+LH E   IH D+K  NVLL
Sbjct: 128 ILKGLDYLHSE-KKIHRDIKAANVLL 152

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 41/171 (23%), Positives = 60/171 (35%), Gaps = 62/171 (36%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLLGSKYSTPADLWSFACICFEL 356
           + KL DFG A     Q T+    R        +  PEV+  S Y + AD+WS      EL
Sbjct: 157 EVKLADFGVA----GQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL 212

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIA--FGGRYSRDFFNRHGDLRHIRR 414
           A G+    PHS  +           M++L ++P+       G YS+              
Sbjct: 213 ARGE---PPHSELH----------PMKVLFLIPKNNPPTLEGNYSKPL------------ 247

Query: 415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                                    +F+   L+  P  RPTA + L H +I
Sbjct: 248 ------------------------KEFVEACLNKEPSFRPTAKELLKHKFI 274

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK-SAQHYTEAALDEIKILKQIAEGD 99
                   K+G G    V LA +  +   VA+K+     Q   E   +E+ I++      
Sbjct: 44  RLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDY---- 99

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVKEICFH 157
                 VV++   +      G+ + ++ E+L    LT I       V L    +  +C  
Sbjct: 100 --QHFNVVEMYKSYLV----GEELWVLMEFLQGGALTDI----VSQVRLNEEQIATVCEA 149

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           +L  L +LH +  +IH D+K +++LL
Sbjct: 150 VLQALAYLHAQ-GVIHRDIKSDSILL 174

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 56/169 (33%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLLGSKYSTPADLWSFACICFEL 356
           + KL DFG       Q + D+  R+       +  PEV+  S Y+T  D+WS   +  E+
Sbjct: 179 RVKLSDFGFC----AQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEM 234

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
             G+    P+  D+           ++ +  +                            
Sbjct: 235 VDGEP---PYFSDS----------PVQAMKRLRDSPP----------------------- 258

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
             P    L   +  S      + DFL  +L   P++R TA + L HP++
Sbjct: 259 --P---KLKNSHKVSP----VLRDFLERMLVRDPQERATAQELLDHPFL 298

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 20/148 (13%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAAL-DEIKILKQIAE 97
             + +   LG G F  V+LA + Q+   +ALKV    +  +   E  L  E++I   +  
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL-- 66

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEIC 155
                   +++L  +F  +      V ++ EY   G  +   ++                
Sbjct: 67  ----RHPNILRLYGYFHDA----TRVYLILEYAPLGT-VYRELQKL--SKFDEQRTATYI 115

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
             +   L + H    +IH D+KPEN+LL
Sbjct: 116 TELANALSYCHS-KRVIHRDIKPENLLL 142

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 55/176 (31%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQTR----QYRCPEVLLGSKYSTPADLWSFACI 352
           LL     + K+ DFG   W+    ++          Y  PE++ G  +    DLWS   +
Sbjct: 140 LLLGSAGELKIADFG---WSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 196

Query: 353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI 412
           C+E   G   F+            +            ++I+                   
Sbjct: 197 CYEFLVGKPPFE---------ANTYQETY--------KRISRV----------------- 222

Query: 413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG 468
                         ++ F +       D +  +L   P +RP   + L HPWI   
Sbjct: 223 --------------EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITAN 264

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 27/150 (18%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAAL----DEIKILKQIAEGD 99
              +KL   H   +W   W       + +KV K  + ++        +E   L+      
Sbjct: 13  NFLTKLNENHSGELWKGRWQGND---IVVKVLK-VRDWSTRKSRDFNEECPRLRIF---- 64

Query: 100 PDDKKCVVKLLDHFKHSG----PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEI 154
                 V+ +L      G    P   H  ++  ++   +L  ++       V      + 
Sbjct: 65  --SHPNVLPVL------GACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKF 116

Query: 155 CFHILVGLDHLH-RELSIIHTDLKPENVLL 183
              +  G+  LH  E  I    L   +V++
Sbjct: 117 ALDMARGMAFLHTLEPLIPRHALNSRSVMI 146

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTP---ADLWSFACICFELAT 358
           D+  ++           Q    +    +  PE L      T    AD+WSFA + +EL T
Sbjct: 149 DMTARISMADVKF--SFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVT 206

Query: 359 GDVLFD 364
            +V F 
Sbjct: 207 REVPFA 212

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEG 98
           G Y +   +G G+F+ V LA    T   VA+K+    +      +    E++I+K +   
Sbjct: 15  GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKIL--- 71

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRG-VPLHMVKEIC 155
              +   +VKL +  +      + + ++ EY   GE    +  Y    G +     +   
Sbjct: 72  ---NHPNIVKLFEVIETE----KTLYLIMEYASGGE----VFDYLVAHGRMKEKEARSKF 120

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLL 183
             I+  + + H+   I+H DLK EN+LL
Sbjct: 121 RQIVSAVQYCHQ-KRIVHRDLKAENLLL 147

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 46/193 (23%), Positives = 64/193 (33%), Gaps = 69/193 (35%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQ----------YRCPEVLLGSKYSTP-AD 345
           LL   D+  K+ DFG        F+N+               Y  PE+  G KY  P  D
Sbjct: 145 LLLDADMNIKIADFG--------FSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVD 196

Query: 346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR 405
           +WS   I + L +G + FD   G N          + EL      ++   G+Y   F+  
Sbjct: 197 VWSLGVILYTLVSGSLPFD---GQN----------LKELR----ERV-LRGKYRIPFY-- 236

Query: 406 HGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                                    S     D  + L   L   P KR T  Q +   WI
Sbjct: 237 ------------------------MST----DCENLLKRFLVLNPIKRGTLEQIMKDRWI 268

Query: 466 NVG--PRLLEPSM 476
           N G     L+P +
Sbjct: 269 NAGHEEDELKPFV 281

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 16/140 (11%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVK 108
           LG G +  V+   D      +A+K + +    Y++   +EI + K +        K +V+
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHL------KHKNIVQ 83

Query: 109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLH--MVKEICFHILVGLDHL 165
            L  F         + +  E + G +L  L++ + +  +  +   +      IL GL +L
Sbjct: 84  YLGSFSE----NGFIKIFMEQVPGGSLSALLR-SKWGPLKDNEQTIGFYTKQILEGLKYL 138

Query: 166 HRELSIIHTDLKPENVLLMS 185
           H    I+H D+K +NVL+ +
Sbjct: 139 HDN-QIVHRDIKGDNVLINT 157

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 13/72 (18%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQTR-------QYRCPEVLLGSK--YSTPADLW 347
           L+       K+ DFG +    K+               QY  PE++      Y   AD+W
Sbjct: 154 LINTYSGVLKISDFGTS----KRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIW 209

Query: 348 SFACICFELATG 359
           S  C   E+ATG
Sbjct: 210 SLGCTIIEMATG 221

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 32/158 (20%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD-------EIKILKQ 94
             Y +   LG G F TV+          VA+KV    +    + L        E+ +L +
Sbjct: 31  AEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWK 90

Query: 95  IAEGD--PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL---GENLLTLIKYADYRGVPLH 149
           +  G   P     V++LLD F+      +   +V E      +    L  Y   +G    
Sbjct: 91  VGAGGGHPG----VIRLLDWFE----TQEGFMLVLERPLPAQD----LFDYITEKG---P 135

Query: 150 MVKEIC---FH-ILVGLDHLHRELSIIHTDLKPENVLL 183
           + +      F  ++  + H H    ++H D+K EN+L+
Sbjct: 136 LGEGPSRCFFGQVVAAIQHCHS-RGVVHRDIKDENILI 172

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 72/203 (35%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQ---------TRQYRCPEVLLGSKYS-TPADL 346
           L+       KL+DFG            +          TR Y  PE +   +Y   PA +
Sbjct: 171 LIDLRRGCAKLIDFG--------SGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATV 222

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           WS   + +++  GD+ F+          +              ++I              
Sbjct: 223 WSLGILLYDMVCGDIPFE---------RD--------------QEI-------------- 245

Query: 407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
             L                     S     D    +   L   P  RP+  + L  PW+ 
Sbjct: 246 --LEAELHFPAH-----------VSP----DCCALIRRCLAPKPSSRPSLEEILLDPWMQ 288

Query: 467 VGPRLLEPSMAATQPQDTGGSIS 489
                +  + +   P     S+ 
Sbjct: 289 TPAEDVPLNPSKGGPAPLAWSLL 311

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 41  NGRYVVQSKLGWGHFSTVWLA-----WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQI 95
              + V   +G G F  ++LA         +     +KV+ S          E+K  ++ 
Sbjct: 34  AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDN---GPLFTELKFYQRA 90

Query: 96  AEGDPDDKKCVVKLLDHF---------KHSGPNGQHVCMVFEYLGENLLTLIKYADYRGV 146
           A+ +   K    + L +           H      +  M+ +  G +L  + +    +  
Sbjct: 91  AKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANA-KRF 149

Query: 147 PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
               V ++   IL  L+++H E   +H D+K  N+LL
Sbjct: 150 SRKTVLQLSLRILDILEYIH-EHEYVHGDIKASNLLL 185

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 21/144 (14%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
            V+  +G G F  V  A W  +    VA+K  +S +   +A + E++ L ++      + 
Sbjct: 11  EVEEVVGRGAFGVVCKAKWRAKD---VAIKQIES-ESERKAFIVELRQLSRV------NH 60

Query: 104 KCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRG-VPLHMVKEICFHILVG 161
             +VKL       G     VC+V EY  G +L  ++  A+             C     G
Sbjct: 61  PNIVKLY------GACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQG 114

Query: 162 LDHLHRE--LSIIHTDLKPENVLL 183
           + +LH     ++IH DLKP N+LL
Sbjct: 115 VAYLHSMQPKALIHRDLKPPNLLL 138

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 25/68 (36%), Positives = 34/68 (50%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
           LL A     K+ DFG AC      TN+  +  +  PEV  GS YS   D++S+  I +E+
Sbjct: 137 LLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEV 196

Query: 357 ATGDVLFD 364
            T    FD
Sbjct: 197 ITRRKPFD 204

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 22/152 (14%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD---------EIKIL 92
            +Y   S LG G F  VW A D + +  V +K  K  +   +  ++         EI IL
Sbjct: 24  QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAIL 83

Query: 93  KQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRG-VPLHMV 151
            ++      +   ++K+LD F+    N     +V E  G   L L  + D    +   + 
Sbjct: 84  SRV------EHANIIKVLDIFE----NQGFFQLVMEKHGSG-LDLFAFIDRHPRLDEPLA 132

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             I   ++  + +L     IIH D+K EN+++
Sbjct: 133 SYIFRQLVSAVGYLRL-KDIIHRDIKDENIVI 163

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 39/227 (17%), Positives = 67/227 (29%), Gaps = 82/227 (36%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQ----------YRCPEVLLGSKYSTP-AD 345
           ++ A D   KL+DFG            ++  +          Y  PEVL+G+ Y  P  +
Sbjct: 161 IVIAEDFTIKLIDFG--------SAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELE 212

Query: 346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNR 405
           +WS     + L   +  F                                          
Sbjct: 213 MWSLGVTLYTLVFEENPFC----------------------------------------- 231

Query: 406 HGDLRHIRRLRF-WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
             +L          P        Y  S+    ++   +  +L  VPE+R T  + +T PW
Sbjct: 232 --ELEETVEAAIHPP--------YLVSK----ELMSLVSGLLQPVPERRTTLEKLVTDPW 277

Query: 465 INVG---PRLLEPSMAATQPQDTG----GSISDKNRREKDEREAMEV 504
           +             +      ++G     S+   NR   D  +A E+
Sbjct: 278 VTQPVNLADYTWEEVFRVNKPESGVLSAASLEMGNRSLSDVAQAQEL 324

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 32/161 (19%)

Query: 34  RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILK 93
           R G  F  G Y ++  +G G    V+ A DT     VALK+          + D +   +
Sbjct: 28  REGTQF--GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSE-----TLSSDPVFRTR 80

Query: 94  QIAEGDPDDKKCVVKLLDHFKHSGPN----------GQHVCMVFEYL-GENLLTLIKYAD 142
              E            L       P+             + +    + G +L  +++   
Sbjct: 81  MQREAR------TAGRLQE-----PHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLR--R 127

Query: 143 YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
              +       I   I   LD  H      H D+KPEN+L+
Sbjct: 128 QGPLAPPRAVAIVRQIGSALDAAHAA-GATHRDVKPENILV 167

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 22/149 (14%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAAL-DEIKILKQIAE 97
             + +   LG G F  V+LA + Q    +ALKV    +  +   E  L  EI+I   +  
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL-- 71

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRG-VPLHMVKEI 154
                   ++++ ++F       + + ++ E+   GE    L K     G          
Sbjct: 72  ----RHPNILRMYNYFHDR----KRIYLMLEFAPRGE----LYKELQKHGRFDEQRSATF 119

Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
              +   L + H    +IH D+KPEN+L+
Sbjct: 120 MEELADALHYCHE-RKVIHRDIKPENLLM 147

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 34/173 (19%), Positives = 55/173 (31%), Gaps = 55/173 (31%)

Query: 306 KLVDFGNACWTYKQFTNDIQTR----QYRCPEVLLGSKYSTPADLWSFACICFELATGDV 361
           K+ DFG   W+    +   +T      Y  PE++ G  +    DLW    +C+E   G  
Sbjct: 154 KIADFG---WSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMP 210

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
            FD            H            R+I             + DL+       +P  
Sbjct: 211 PFD---------SPSHTETH--------RRI------------VNVDLK-------FP-- 232

Query: 422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEP 474
                    S+       D +  +L + P +R      + HPW+    R + P
Sbjct: 233 ------PFLSD----GSKDLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLP 275

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDP 100
              + V  KLG G + +V+ A   +T   VA+K         E  + EI I++Q      
Sbjct: 28  EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQE-IIKEISIMQQC----- 81

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPL--HMVKEICFH 157
            D   VVK    +         + +V EY    ++  +I+    R   L    +  I   
Sbjct: 82  -DSPHVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIIR---LRNKTLTEDEIATILQS 133

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
            L GL++LH     IH D+K  N+LL
Sbjct: 134 TLKGLEYLHFM-RKIHRDIKAGNILL 158

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 44/206 (21%), Positives = 68/206 (33%), Gaps = 65/206 (31%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQ-------YRCPEVLLGSKYSTPADLWSFACICFEL 356
             KL DFG A     Q T+ +  R        +  PEV+    Y+  AD+WS      E+
Sbjct: 163 HAKLADFGVA----GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEM 218

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
           A G     P++  +           M  + M+P                           
Sbjct: 219 AEGK---PPYADIH----------PMRAIFMIPTNPP----------------------- 242

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN--VGPRLLEP 474
             P      +   +S+    +  DF+   L   PE+R TA Q L HP++    G  +L  
Sbjct: 243 --P---TFRKPELWSD----NFTDFVKQCLVKSPEQRATATQLLQHPFVRSAKGVSILRD 293

Query: 475 SMAATQPQDTGGSISDKNRREKDERE 500
            +                R+E  +RE
Sbjct: 294 LINEAMDV-------KLKRQESQQRE 312

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 29/162 (17%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHYVALKV-QKSAQHYTEAALD----EIKILKQIAEG 98
            ++  +G G F  V+ A W       VA+K  +          ++    E K+   +   
Sbjct: 10  TLEEIIGIGGFGKVYRAFWIGDE---VAVKAARHDPDEDISQTIENVRQEAKLFAML--- 63

Query: 99  DPDDKKCVVKLLDHFKHSG--PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEIC 155
                  ++ L       G      ++C+V E+  G  L  ++     + +P  ++    
Sbjct: 64  ---KHPNIIALR------GVCLKEPNLCLVMEFARGGPLNRVLSG---KRIPPDILVNWA 111

Query: 156 FHILVGLDHLHRE--LSIIHTDLKPENVLLMSMIDPSKDPRK 195
             I  G+++LH E  + IIH DLK  N+L++  ++      K
Sbjct: 112 VQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNK 153

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 292 SRRKELLAAVDLKCKLVDFGNAC-WTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA 350
            ++ E     +   K+ DFG A  W      +      +  PEV+  S +S  +D+WS+ 
Sbjct: 142 LQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYG 201

Query: 351 CICFELATGDVLFD 364
            + +EL TG+V F 
Sbjct: 202 VLLWELLTGEVPFR 215

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 46/153 (30%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILKQIAEGDPDD 102
           LG G FSTV LA +  TS   A+K+       +++   Y      E  ++ ++      D
Sbjct: 38  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYV---TRERDVMSRL------D 88

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH--- 157
               VKL   F+    + + +     Y   GE LL  I+            K   F    
Sbjct: 89  HPFFVKLYFTFQ----DDEKLYFGLSYAKNGE-LLKYIR------------KIGSFDETC 131

Query: 158 -------ILVGLDHLHRELSIIHTDLKPENVLL 183
                  I+  L++LH    IIH DLKPEN+LL
Sbjct: 132 TRFYTAEIVSALEYLH-GKGIIHRDLKPENILL 163

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 24/78 (30%)

Query: 302 DLK-----------CKLVDFGNACWTYKQFTNDIQ---------TRQYRCPEVLLGSKYS 341
           DLK            ++ DFG A    K  + + +         T QY  PE+L      
Sbjct: 155 DLKPENILLNEDMHIQITDFGTA----KVLSPESKQARANSFVGTAQYVSPELLTEKSAC 210

Query: 342 TPADLWSFACICFELATG 359
             +DLW+  CI ++L  G
Sbjct: 211 KSSDLWALGCIIYQLVAG 228

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 23/150 (15%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALD-EIKILKQIAE 97
             + V + LG G F+ V+ A    T   VA+K+   +   +      +  E+KI  Q+  
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQL-- 68

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPL--HMVKE 153
                   +++L ++F+    +  +V +V E    GE    + +Y   R  P   +  + 
Sbjct: 69  ----KHPSILELYNYFE----DSNYVYLVLEMCHNGE----MNRYLKNRVKPFSENEARH 116

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLL 183
               I+ G+ +LH    I+H DL   N+LL
Sbjct: 117 FMHQIITGMLYLHS-HGILHRDLTLSNLLL 145

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 48/141 (34%)

Query: 329 YRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMM 388
           Y  PE+   S +   +D+WS  C+ + L  G   FD          +         L   
Sbjct: 178 YISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFD---------TDTV----KNTL--- 221

Query: 389 PRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDF 448
             K+               D          P           S     +  D +  +L  
Sbjct: 222 -NKV------------VLADYE-------MP--------SFLSI----EAKDLIHQLLRR 249

Query: 449 VPEKRPTAAQCLTHPWINVGP 469
            P  R + +  L HP+++   
Sbjct: 250 NPADRLSLSSVLDHPFMSRNS 270

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 44/151 (29%), Positives = 59/151 (39%), Gaps = 27/151 (17%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD----EIKILKQIAE 97
           G Y+++  LG G F  V LA   +T   VALK                  EI  LK +  
Sbjct: 9   GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLL-- 66

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI--- 154
                   ++KL D           + MV EY G  L   I       V    + E    
Sbjct: 67  ----RHPHIIKLYDVIT----TPTDIVMVIEYAGGELFDYI-------VEKKRMTEDEGR 111

Query: 155 -CFH-ILVGLDHLHRELSIIHTDLKPENVLL 183
             F  I+  +++ HR   I+H DLKPEN+LL
Sbjct: 112 RFFQQIICAIEYCHR-HKIVHRDLKPENLLL 141

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 30/149 (20%), Positives = 45/149 (30%), Gaps = 50/149 (33%)

Query: 329 YRCPEVLLGSKYSTP-ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM 387
           Y  PEV+ G  Y+ P  D+WS   + + +  G + FD         DE     +  L   
Sbjct: 173 YAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFD---------DEF----IPNLF-- 217

Query: 388 MPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILD 447
             +K+     Y    F                           S          +  ++ 
Sbjct: 218 --KKV-NSCVYVMPDF--------------------------LSP----GAQSLIRRMIV 244

Query: 448 FVPEKRPTAAQCLTHPWINVG-PRLLEPS 475
             P +R T  +    PW NV  P  L P 
Sbjct: 245 ADPMQRITIQEIRRDPWFNVNLPDYLRPM 273

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 42/154 (27%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALD----EIKILKQIAEGD 99
            V  ++G G F TV+   W       VA+K+       T   L     E+ +L++     
Sbjct: 27  TVGQRIGSGSFGTVYKGKWHGD----VAVKMLNV-TAPTPQQLQAFKNEVGVLRK----- 76

Query: 100 PDDKKCVVKLLDHFKHSGPN---------GQHVCMVFEYL-GENLLTLIKYADYRGVPLH 149
                       H      N            + +V ++  G +L   +  ++ +   + 
Sbjct: 77  ----------TRH-----VNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHASETK-FEMK 120

Query: 150 MVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
            + +I      G+D+LH + SIIH DLK  N+ L
Sbjct: 121 KLIDIARQTARGMDYLHAK-SIIHRDLKSNNIFL 153

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 297 LLAAVDLKCKLVDFGNA-----CWTYKQFTNDIQTRQYRCPEVLLG---SKYSTPADLWS 348
           +    D   K+ DFG A          QF     +  +  PEV+     + YS  +D+++
Sbjct: 151 IFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYA 210

Query: 349 FACICFELATGDVLFD 364
           F  + +EL TG + + 
Sbjct: 211 FGIVLYELMTGQLPYS 226

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 26/149 (17%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALD----EIKILKQIAEGD 99
            ++ K+G G F TV  A W       VA+K+    Q +    ++    E+ I+K++    
Sbjct: 40  NIKEKIGAGSFGTVHRAEWHGSD---VAVKILME-QDFHAERVNEFLREVAIMKRL---- 91

Query: 100 PDDKKCVVKLLDHFKHSG--PNGQHVCMVFEYL-GENLLT-LIKYADYRGVPLHMVKEIC 155
                 +V  +      G      ++ +V EYL   +L   L K      +       + 
Sbjct: 92  --RHPNIVLFM------GAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMA 143

Query: 156 FHILVGLDHLH-RELSIIHTDLKPENVLL 183
           + +  G+++LH R   I+H +LK  N+L+
Sbjct: 144 YDVAKGMNYLHNRNPPIVHRNLKSPNLLV 172

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 302 DLKCKLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT 358
               K+ DFG +     T+    +   T ++  PEVL     +  +D++SF  I +ELAT
Sbjct: 175 KYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELAT 234

Query: 359 GDVLFD 364
               + 
Sbjct: 235 LQQPWG 240

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 60.3 bits (145), Expect = 4e-10
 Identities = 34/187 (18%), Positives = 56/187 (29%), Gaps = 38/187 (20%)

Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---------QKSAQHYTE 83
           V         +     K+G G F  V+      T   VA+K+           S Q   E
Sbjct: 11  VPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADHTP--VAIKIIAIEGPDLVNGSHQKTFE 68

Query: 84  AALDEIKILKQIAEGDPDDKKC---VVKLLDHFKHSGPNGQHVCMVFEY----------- 129
             L EI I K+++    +        + L       G     +   +++           
Sbjct: 69  EILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDR 128

Query: 130 ---LGENLLTLIKYADYRGVPLHM----------VKEICFHILVGLDHLHRELSIIHTDL 176
                ++ L ++   ++ G+ L             K I   +   L      L   H DL
Sbjct: 129 PDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDL 188

Query: 177 KPENVLL 183
              NVLL
Sbjct: 189 HWGNVLL 195

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 45/153 (29%), Positives = 63/153 (41%), Gaps = 30/153 (19%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD----EIKILKQIAE 97
           G Y++   LG G F  V +     T H VA+K+    +  +   +     EI+ LK    
Sbjct: 16  GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLF-- 73

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEI- 154
                   ++KL             + MV EY+  GE    L  Y    G     + E  
Sbjct: 74  ----RHPHIIKLYQVIS----TPSDIFMVMEYVSGGE----LFDYICKNG----RLDEKE 117

Query: 155 ---CFH-ILVGLDHLHRELSIIHTDLKPENVLL 183
               F  IL G+D+ HR   ++H DLKPENVLL
Sbjct: 118 SRRLFQQILSGVDYCHR-HMVVHRDLKPENVLL 149

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 31/149 (20%), Positives = 45/149 (30%), Gaps = 50/149 (33%)

Query: 329 YRCPEVLLGSKYSTP-ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM 387
           Y  PEV+ G  Y+ P  D+WS   I + L  G + FD         D+     +  L   
Sbjct: 181 YAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFD---------DDH----VPTLF-- 225

Query: 388 MPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILD 447
             +KI   G +                   +            +      +   L  +L 
Sbjct: 226 --KKI-CDGIF---------------YTPQY-----------LNP----SVISLLKHMLQ 252

Query: 448 FVPEKRPTAAQCLTHPWINVG-PRLLEPS 475
             P KR T      H W     P+ L P 
Sbjct: 253 VDPMKRATIKDIREHEWFKQDLPKYLFPE 281

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 59.1 bits (144), Expect = 6e-10
 Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 30/153 (19%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD----EIKILKQIAE 97
           G YV+   LG G F  V +     T H VA+K+    +  +   +     EI+ LK    
Sbjct: 11  GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLF-- 68

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEI- 154
                   ++KL               MV EY+  GE    L  Y    G     V+E+ 
Sbjct: 69  ----RHPHIIKLYQVIS----TPTDFFMVMEYVSGGE----LFDYICKHG----RVEEME 112

Query: 155 ---CFH-ILVGLDHLHRELSIIHTDLKPENVLL 183
               F  IL  +D+ HR   ++H DLKPENVLL
Sbjct: 113 ARRLFQQILSAVDYCHR-HMVVHRDLKPENVLL 144

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 32/148 (21%), Positives = 48/148 (32%), Gaps = 50/148 (33%)

Query: 329 YRCPEVLLGSKYSTP-ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM 387
           Y  PEV+ G  Y+ P  D+WS   I + L  G + FD    ++          +  L   
Sbjct: 176 YAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFD---DEH----------VPTLF-- 220

Query: 388 MPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILD 447
             +KI  GG +                +  +            +      +A  L+ +L 
Sbjct: 221 --KKI-RGGVF---------------YIPEY-----------LNR----SVATLLMHMLQ 247

Query: 448 FVPEKRPTAAQCLTHPWINVG-PRLLEP 474
             P KR T      H W     P  L P
Sbjct: 248 VDPLKRATIKDIREHEWFKQDLPSYLFP 275

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 17/139 (12%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKC 105
           +G G FS V +    QT    A+K+        +       +E  +L         D++ 
Sbjct: 69  IGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNG------DRRW 122

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDH 164
           + +L   F+    +  ++ +V EY  G +LLTL+     R +P  M +     I++ +D 
Sbjct: 123 ITQLHFAFQ----DENYLYLVMEYYVGGDLLTLLSKFGER-IPAEMARFYLAEIVMAIDS 177

Query: 165 LHRELSIIHTDLKPENVLL 183
           +H  L  +H D+KP+N+LL
Sbjct: 178 VH-RLGYVHRDIKPDNILL 195

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 40/169 (23%), Positives = 55/169 (32%), Gaps = 46/169 (27%)

Query: 32  AVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKI 91
            + M     + RY     +G G+F    L  D  T   VA+K  +      E    EI  
Sbjct: 10  PLDMPIMHDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIIN 69

Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPN----------GQHVCMVFEYL--GENLLTLIK 139
                           + L H     PN            H+ ++ EY   GE    L +
Sbjct: 70  H---------------RSLRH-----PNIVRFKEVILTPTHLAIIMEYASGGE----LYE 105

Query: 140 YADYRGVPLHMVKE----ICFH-ILVGLDHLHRELSIIHTDLKPENVLL 183
                G       E      F  +L G+ + H  + I H DLK EN LL
Sbjct: 106 RICNAG----RFSEDEARFFFQQLLSGVSYCHS-MQICHRDLKLENTLL 149

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 42/224 (18%), Positives = 66/224 (29%), Gaps = 55/224 (24%)

Query: 306 KLVDFGNACWTYKQFTNDIQ------TRQYRCPEVLLGSKYSTP-ADLWSFACICFELAT 358
           K+ DFG +    K      Q      T  Y  PEVLL  +Y    AD+WS     + +  
Sbjct: 158 KICDFGYS----KSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLV 213

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
           G   F+         D +             ++I    +YS                   
Sbjct: 214 GAYPFE---------DPE----EPRDYRKTIQRI-LSVKYS------------------I 241

Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG--PRLLEPSM 476
           P      +    S     +    +  I    P  R +  +  TH W        L+  S 
Sbjct: 242 P------DDIRISP----ECCHLISRIFVADPATRISIPEIKTHSWFLKNLPADLMNESN 291

Query: 477 AATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSRD 520
             +Q Q+    +   +   +   EA    V N  +D     + D
Sbjct: 292 TGSQFQEPEQPMQSLDTIMQIISEATIPAVRNRCLDDFMTDNLD 335

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 23/149 (15%)

Query: 45  VVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALD--------EIKILKQIA 96
             + ++G G F  V      +    VA+K         E  +         E+ I+  + 
Sbjct: 22  EYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL- 80

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEIC 155
                +   +VKL       G       MV E++   +L   +    +  +   +   + 
Sbjct: 81  -----NHPNIVKLY------GLMHNPPRMVMEFVPCGDLYHRLLDKAHP-IKWSVKLRLM 128

Query: 156 FHILVGLDHLH-RELSIIHTDLKPENVLL 183
             I +G++++  +   I+H DL+  N+ L
Sbjct: 129 LDIALGIEYMQNQNPPIVHRDLRSPNIFL 157

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG--SKYSTPADLWSFACICFELATG 359
            +  K+ DFG +  +    +  +   Q+  PE +      Y+  AD +SFA I + + TG
Sbjct: 165 PVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTG 224

Query: 360 DVLFD 364
           +  FD
Sbjct: 225 EGPFD 229

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 27/147 (18%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALD----EIKILKQIAEGD 99
            +   +G G F  V+   W  +    VA+++    +   E  L     E+   +Q     
Sbjct: 36  EIGELIGKGRFGQVYHGRWHGE----VAIRLIDI-ERDNEDQLKAFKREVMAYRQT---- 86

Query: 100 PDDKKCVVKLLDHFKHSG--PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICF 156
               + VV  +      G   +  H+ ++     G  L ++++ A    + ++  ++I  
Sbjct: 87  --RHENVVLFM------GACMSPPHLAIITSLCKGRTLYSVVRDAKIV-LDVNKTRQIAQ 137

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLL 183
            I+ G+ +LH +  I+H DLK +NV  
Sbjct: 138 EIVKGMGYLHAK-GILHKDLKSKNVFY 163

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 19/139 (13%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKC 105
           +G G F  V L     T    A+K+        +  +    +E  I+         +   
Sbjct: 77  IGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA------NSPW 130

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDH 164
           VV+L   F+    + +++ MV EY+ G +L+ L+       VP    +     +++ LD 
Sbjct: 131 VVQLFYAFQ----DDRYLYMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDA 183

Query: 165 LHRELSIIHTDLKPENVLL 183
           +H  +  IH D+KP+N+LL
Sbjct: 184 IH-SMGFIHRDVKPDNMLL 201

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 29/195 (14%)

Query: 3   EDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYV-----VQSKLGWGHFST 57
           ED + DR  +S+ T+  +   D    G  +   G      R +     +Q  +G G F  
Sbjct: 1   EDPSLDRPFISEGTTLKDLIYDMTTSGSGS---GLPLLVQRTIARTIVLQESIGKGRFGE 57

Query: 58  VWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS 116
           VW   W  +    VA+K+  S +  +     EI     +        + ++  +      
Sbjct: 58  VWRGKWRGEE---VAVKIFSSREERSWFREAEIYQTVML------RHENILGFIAADNKD 108

Query: 117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHREL------ 169
                 + +V +Y    +L   +       V +  + ++      GL HLH E+      
Sbjct: 109 NGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGK 165

Query: 170 -SIIHTDLKPENVLL 183
            +I H DLK +N+L+
Sbjct: 166 PAIAHRDLKSKNILV 180

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 15/84 (17%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQ--------TRQYRCPEVLLGS------KYST 342
           +L   +  C + D G A   +   T+ I         T++Y  PEVL  S      +   
Sbjct: 178 ILVKKNGTCCIADLGLAV-RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFK 236

Query: 343 PADLWSFACICFELATGDVLFDPH 366
            AD+++   + +E+A    +   H
Sbjct: 237 RADIYAMGLVFWEIARRCSIGGIH 260

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 19/140 (13%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKC 105
           +G G F  V +          A+K+        +  T    +E  +L         D K 
Sbjct: 82  IGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG------DSKW 135

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHILVGLD 163
           +  L   F+    +  ++ +V +Y   G+ LLTL+   + R +P  M +     +++ +D
Sbjct: 136 ITTLHYAFQ----DDNNLYLVMDYYVGGD-LLTLLSKFEDR-LPEEMARFYLAEMVIAID 189

Query: 164 HLHRELSIIHTDLKPENVLL 183
            +H +L  +H D+KP+N+L+
Sbjct: 190 SVH-QLHYVHRDIKPDNILM 208

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 28/151 (18%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGD 99
             + +   LG G +  V LA +  T   VA+K+   K A    E    EI I K +    
Sbjct: 7   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML---- 62

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEI--- 154
             + + VVK   H +     G    +  EY   GE    L    +        + E    
Sbjct: 63  --NHENVVKFYGHRR----EGNIQYLFLEYCSGGE----LFDRIEPDI----GMPEPDAQ 108

Query: 155 -CFH-ILVGLDHLHRELSIIHTDLKPENVLL 183
             FH ++ G+ +LH  + I H D+KPEN+LL
Sbjct: 109 RFFHQLMAGVVYLHG-IGITHRDIKPENLLL 138

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 26/176 (14%), Positives = 42/176 (23%), Gaps = 52/176 (29%)

Query: 306 KLVDFG-NACWTYKQFTNDIQTR----QYRCPEVLLGSKYS-TPADLWSFACICFELATG 359
           K+ DFG    + Y      +        Y  PE+L   ++   P D+WS   +   +  G
Sbjct: 145 KISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
           ++ +D                  E              Y   +                 
Sbjct: 205 ELPWD-----------QPSDSCQEY-----SDWKEKKTYLNPWKKIDSAPLA-------- 240

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG-PRLLEP 474
               L+ K                 IL   P  R T        W N    +  + 
Sbjct: 241 ----LLHK-----------------ILVENPSARITIPDIKKDRWYNKPLKKGAKR 275

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 64/179 (35%)

Query: 302 DLKCKLVDFGNAC---------------WTYKQFTNDIQTRQYRCPEVLLGSKYSTPADL 346
           D   K+ DFG                    Y   T  + T+ Y  PE + G+ YS   D+
Sbjct: 200 DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDI 259

Query: 347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH 406
           +S   I FEL      F            + + ++ ++     R      ++   F  ++
Sbjct: 260 FSLGLILFELLYS---FSTQM--------ERVRIITDV-----RN----LKFPLLFTQKY 299

Query: 407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                            +++                  +L   P +RP A   + +   
Sbjct: 300 PQEHM------------MVQD-----------------MLSPSPTERPEATDIIENAIF 329

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 26/193 (13%), Positives = 52/193 (26%), Gaps = 52/193 (26%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIA----- 96
           +     +G G F  V+ A +       A+K     + +   E  + E+K L ++      
Sbjct: 8   FEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIV 67

Query: 97  ----------------------------------EGDPDDKKCVVKLLD--------HFK 114
                                                 D     ++ +D           
Sbjct: 68  RYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQL 127

Query: 115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVP-LHMVKEICFHILVGLDHLHRELSII 172
                  ++ +  +    ENL   +            +   I   I   ++ LH +  ++
Sbjct: 128 QPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSK-GLM 186

Query: 173 HTDLKPENVLLMS 185
           H DLKP N+    
Sbjct: 187 HRDLKPSNIFFTM 199

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 20/140 (14%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKC 105
           LG G F  V L    ++ ++ A+K+    +       E  L+E +IL+ +      +   
Sbjct: 49  LGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV------NFPF 102

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHILVGLD 163
           +VKL   FK    +  ++ MV EY+  GE + + ++            +     I++  +
Sbjct: 103 LVKLEFSFK----DNSNLYMVMEYVAGGE-MFSHLR--RIGRFSEPHARFYAAQIVLTFE 155

Query: 164 HLHRELSIIHTDLKPENVLL 183
           +LH  L +I+ DLKPEN+L+
Sbjct: 156 YLH-SLDLIYRDLKPENLLI 174

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 14/141 (9%)

Query: 45  VVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAA-LDEIKILKQIAEGDPDDK 103
           +    LG G F         +T   + +K        T+   L E+K+++ +      + 
Sbjct: 13  IHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCL------EH 66

Query: 104 KCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
             V+K +            +  + EY+ G  L  +IK  D    P          I  G+
Sbjct: 67  PNVLKFIGVLYKDKR----LNFITEYIKGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGM 121

Query: 163 DHLHRELSIIHTDLKPENVLL 183
            +LH  ++IIH DL   N L+
Sbjct: 122 AYLHS-MNIIHRDLNSHNCLV 141

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 17/81 (20%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRC-----------------PEVLLGSKYSTPA 344
           +    + DFG A     + T     R  +                  PE++ G  Y    
Sbjct: 144 NKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKV 203

Query: 345 DLWSFACICFELATGDVLFDP 365
           D++SF  +  E+         
Sbjct: 204 DVFSFGIVLCEIIGRVNADPD 224

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 28/151 (18%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGD 99
             + +   LG G +  V LA +  T   VA+K+   K A    E    EI I K +    
Sbjct: 7   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML---- 62

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEI--- 154
             + + VVK   H +     G    +  EY   GE    L    +        + E    
Sbjct: 63  --NHENVVKFYGHRR----EGNIQYLFLEYCSGGE----LFDRIEPDI----GMPEPDAQ 108

Query: 155 -CFH-ILVGLDHLHRELSIIHTDLKPENVLL 183
             FH ++ G+ +LH  + I H D+KPEN+LL
Sbjct: 109 RFFHQLMAGVVYLHG-IGITHRDIKPENLLL 138

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 28/205 (13%), Positives = 49/205 (23%), Gaps = 52/205 (25%)

Query: 306 KLVDFG-NACWTYKQFTNDIQTR----QYRCPEVLLGSKYS-TPADLWSFACICFELATG 359
           K+ DFG    + Y      +        Y  PE+L   ++   P D+WS   +   +  G
Sbjct: 145 KISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
           ++ +D                  E              Y   +                 
Sbjct: 205 ELPWD-----------QPSDSCQEY-----SDWKEKKTYLNPWKKIDSAPLA-------- 240

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG-PRLLEPSMAA 478
               L+ K                 IL   P  R T        W N    +  +     
Sbjct: 241 ----LLHK-----------------ILVENPSARITIPDIKKDRWYNKPLKKGAKRPRVT 279

Query: 479 TQPQDTGGSISDKNRREKDEREAME 503
           +       S   K+ +   +   + 
Sbjct: 280 SGGVSESPSGFSKHIQSNLDFSPVN 304

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 56.4 bits (137), Expect = 7e-09
 Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 48/154 (31%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKV--------QKSAQHYTEAALDEIKILKQIAEGDPD 101
           LG G F  V L        Y A+KV         K  +H      DE  +L  +      
Sbjct: 14  LGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEH----TNDERLMLSIV------ 63

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH-- 157
               ++++   F+    + Q + M+ +Y+  GE L +             + K   F   
Sbjct: 64  THPFIIRMWGTFQ----DAQQIFMIMDYIEGGE-LFS------------LLRKSQRFPNP 106

Query: 158 --------ILVGLDHLHRELSIIHTDLKPENVLL 183
                   + + L++LH    II+ DLKPEN+LL
Sbjct: 107 VAKFYAAEVCLALEYLH-SKDIIYRDLKPENILL 139

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 37/149 (24%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           LG G F  V L  +  T  Y A+K+ K     A+      L E ++L+            
Sbjct: 156 LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS------RHPF 209

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICF-------- 156
           +  L   F+        +C V EY  G  L              H+ +E  F        
Sbjct: 210 LTALKYSFQ----THDRLCFVMEYANGGELFF------------HLSRERVFSEDRARFY 253

Query: 157 --HILVGLDHLHRELSIIHTDLKPENVLL 183
              I+  LD+LH E ++++ DLK EN++L
Sbjct: 254 GAEIVSALDYLHSEKNVVYRDLKLENLML 282

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 27/149 (18%)

Query: 47  QSKLGWGHFSTVWLA-WDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGDPDD 102
             ++G G +  VW+  W  +    VA+KV    + A  + E    EI     +       
Sbjct: 42  VKQIGKGRYGEVWMGKWRGEK---VAVKVFFTTEEASWFRET---EIYQTVLM------R 89

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVG 161
            + ++  +        +   + ++ +Y    +L   +K      +    + ++ +  + G
Sbjct: 90  HENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSG 146

Query: 162 LDHLHREL-------SIIHTDLKPENVLL 183
           L HLH E+       +I H DLK +N+L+
Sbjct: 147 LCHLHTEIFSTQGKPAIAHRDLKSKNILV 175

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQ--------TRQYRCPEVLLGS------KYST 342
           +L   +  C + D G A   +   TN++         T++Y  PEVL  S      +   
Sbjct: 173 ILVKKNGTCCIADLGLAV-KFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYI 231

Query: 343 PADLWSFACICFELATGDVLFDPH 366
            AD++SF  I +E+A   V     
Sbjct: 232 MADMYSFGLILWEVARRCVSGGIV 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 74/467 (15%), Positives = 148/467 (31%), Gaps = 122/467 (26%)

Query: 142 DY-RGVPLHMVKEICFHILVGLDHLHRELSIIHT-DLKPENVL--------------LMS 185
           D  + +   + KE   HI++  D +   L +  T   K E ++              LMS
Sbjct: 40  DMPKSI---LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 186 MI-DPSKDPRKSGPPPMLLTKKDKL-----VLDPSN-----QKKKIKKKAKKAAQ----- 229
            I    + P  S    M + ++D+L     V    N        K+++   +        
Sbjct: 97  PIKTEQRQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 230 -----GC--SS--NEACEENESDSKPSSPDH-TSVDAEPNGDSVEDQQNGSLIKNEATSN 279
                G   +    + C   +   K        ++    + ++V +     L + +    
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 280 EGINKDCKRPSR-----SRRKELLAAVDLK-CKLV--DFGNACWTYKQFTNDIQTRQYRC 331
              +       R     +  + LL +   + C LV  +  NA   +  F  ++      C
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAF--NLS-----C 266

Query: 332 PEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGM---- 387
             +LL +++    D  S A       T  +  D HS      DE   +L+++ L      
Sbjct: 267 K-ILLTTRFKQVTDFLSAA------TTTHISLDHHS-MTLTPDEV-KSLLLKYLDCRPQD 317

Query: 388 --------MPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL---IEKYDFSEKDAN 436
                    PR+++      RD         + + +    L  ++   +   + +E    
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 437 --DMADFL--VPILDFVPEKRPTAAQCLTHPWINVGPR--------LLEPSMAATQPQDT 484
              ++ F     I    P         L+  W +V           L + S+   QP+++
Sbjct: 375 FDRLSVFPPSAHI----PTIL------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 485 GGSISD---KNRREKDEREAMEVR-VGNIAI------DGVSKPSRDN 521
             SI     + + + +   A+    V +  I      D +  P  D 
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 9e-06
 Identities = 64/429 (14%), Positives = 127/429 (29%), Gaps = 122/429 (28%)

Query: 13  SDYTSEDEGTEDYRRGGYHAV--RMGDTFKNGRYV--------VQSKLGWGHFSTVWLAW 62
            ++TS  + + + +    H++   +    K+  Y         VQ+          W A+
Sbjct: 211 PNWTSRSDHSSNIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNA-------KAWNAF 262

Query: 63  DTQ-----TSHYVALKVQKSAQHYTEAALDEIK----------ILKQIAEGDPDDKKCVV 107
           +       T+ +  +    SA   T  +LD             +L +  +  P D     
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----- 317

Query: 108 KLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLD--HL 165
             L     +  N + + ++ E + + L T   +       L  + E   ++L   +   +
Sbjct: 318 --LPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 166 HRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTK--KDKLVLDPSNQKKKIKKK 223
              LS+      P +  +               P +LL+    D +  D      K+ K 
Sbjct: 375 FDRLSVF-----PPSAHI---------------PTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 224 AKKAAQGCSSNEACEENESDSKPSSPD-HTSVDAEPNGDSVEDQQNGSLI----KNEATS 278
           +             E+   +S  S P  +  +  +      E   + S++      +   
Sbjct: 415 S-----------LVEKQPKESTISIPSIYLELKVKLEN---EYALHRSIVDHYNIPKTFD 460

Query: 279 NEGINKDC-------------KRPSRSRRKELLAAV--D---LKCKLVDFGNACWTYKQF 320
           ++ +                 K      R  L   V  D   L+ K+     A       
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 321 TNDIQT-RQYRCPEVLLGSKYSTPADLWSFACICFELATGDVL-FDPHSGDNYDRDED-- 376
            N +Q  + Y+         Y    D        +E     +L F P   +N    +   
Sbjct: 521 LNTLQQLKFYK--------PYICDNDP------KYERLVNAILDFLPKIEENLICSKYTD 566

Query: 377 --HLALMME 383
              +ALM E
Sbjct: 567 LLRIALMAE 575

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 27/151 (17%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGDP 100
            +   +G G +  VW   W  +    VA+K+   +     + E    E+     +     
Sbjct: 11  TLLECVGKGRYGEVWRGSWQGEN---VAVKIFSSRDEKSWFRET---ELYNTVML----- 59

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHIL 159
              + ++  +     S  +   + ++  Y    +L   ++      +       I   I 
Sbjct: 60  -RHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIA 115

Query: 160 VGLDHLHREL-------SIIHTDLKPENVLL 183
            GL HLH E+       +I H DLK +N+L+
Sbjct: 116 SGLAHLHIEIFGTQGKPAIAHRDLKSKNILV 146

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKC 105
           LG G F  V       T    A K  +      +     AL+E +IL+++      + + 
Sbjct: 192 LGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV------NSRF 245

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDH 164
           VV L   ++        +C+V   + G +L   I +    G P          I  GL+ 
Sbjct: 246 VVSLAYAYE----TKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLED 301

Query: 165 LHRELSIIHTDLKPENVLL 183
           LH    I++ DLKPEN+LL
Sbjct: 302 LH-RERIVYRDLKPENILL 319

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 305 CKLVDFGNACWTYKQFTNDIQTRQ------YRCPEVLLGSKYSTPADLWSFACICFELAT 358
            ++ D G A             +       Y  PEV+   +Y+   D W+  C+ +E+  
Sbjct: 325 IRISDLGLA----VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA 380

Query: 359 G 359
           G
Sbjct: 381 G 381

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 25/149 (16%)

Query: 47  QSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKC 105
              +G G +  V+    D +    VA+KV   A          I  +  +      +   
Sbjct: 18  LELIGRGRYGAVYKGSLDER---PVAVKVFSFANRQNFINEKNIYRVPLM------EHDN 68

Query: 106 VVKLLDH-FKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
           + + +    + +        +V EY   G    +L KY             +   +  GL
Sbjct: 69  IARFIVGDERVTADGRMEYLLVMEYYPNG----SLXKYLSLHTSDWVSSCRLAHSVTRGL 124

Query: 163 DHLHREL--------SIIHTDLKPENVLL 183
            +LH EL        +I H DL   NVL+
Sbjct: 125 AYLHTELPRGDHYKPAISHRDLNSRNVLV 153

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKC 105
           +G G F  V+      T    A+K     +         AL+E  +L  ++ GD      
Sbjct: 197 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDC---PF 253

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDH 164
           +V +   F         +  + + + G +L   +            ++     I++GL+H
Sbjct: 254 IVCMSYAFH----TPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEH 307

Query: 165 LHRELSIIHTDLKPENVLL 183
           +H    +++ DLKP N+LL
Sbjct: 308 MH-NRFVVYRDLKPANILL 325

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 305 CKLVDFGNACWTYKQFTNDI-QTRQYRCPEVLL-GSKYSTPADLWSFACICFELATGDVL 362
            ++ D G AC   K+  +    T  Y  PEVL  G  Y + AD +S  C+ F+L  G   
Sbjct: 331 VRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSP 390

Query: 363 FDPHSGDNYDRDE 375
           F  H     D+ E
Sbjct: 391 FRQHKTK--DKHE 401

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 49/155 (31%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILKQIAEGDPDD 102
           +G G ++ V L    +T    A+KV             + +    E  + +Q +      
Sbjct: 17  IGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQT---EKHVFEQAS------ 67

Query: 103 KKC--VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH- 157
                +V L   F+        +  V EY+  G+ L+             HM ++     
Sbjct: 68  -NHPFLVGLHSCFQ----TESRLFFVIEYVNGGD-LMF------------HMQRQRKLPE 109

Query: 158 ---------ILVGLDHLHRELSIIHTDLKPENVLL 183
                    I + L++LH E  II+ DLK +NVLL
Sbjct: 110 EHARFYSAEISLALNYLH-ERGIIYRDLKLDNVLL 143

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 24/97 (24%)

Query: 302 DLK-----------CKLVDFGNACWTYKQF-TNDIQTR------QYRCPEVLLGSKYSTP 343
           DLK            KL D+G  C   K+       T        Y  PE+L G  Y   
Sbjct: 135 DLKLDNVLLDSEGHIKLTDYG-MC---KEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFS 190

Query: 344 ADLWSFACICFELATGDVLF--DPHSGDNYDRDEDHL 378
            D W+   + FE+  G   F     S +     ED+L
Sbjct: 191 VDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL 227

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 43/152 (28%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           +G G ++ V L    +T    A++V K    +     +    E  + +Q +         
Sbjct: 60  IGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQAS-------NH 112

Query: 106 --VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH---- 157
             +V L   F+        +  V EY+  G+ L+             HM ++        
Sbjct: 113 PFLVGLHSCFQ----TESRLFFVIEYVNGGD-LMF------------HMQRQRKLPEEHA 155

Query: 158 ------ILVGLDHLHRELSIIHTDLKPENVLL 183
                 I + L++LH E  II+ DLK +NVLL
Sbjct: 156 RFYSAEISLALNYLH-ERGIIYRDLKLDNVLL 186

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           LG G F  V+      T    A K         +   + A+ E KIL ++        + 
Sbjct: 193 LGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKV------HSRF 246

Query: 106 VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICF---HILVG 161
           +V L   F+        +C+V   + G ++   I   D             F    I+ G
Sbjct: 247 IVSLAYAFE----TKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQE-PRAIFYTAQIVSG 301

Query: 162 LDHLHRELSIIHTDLKPENVLL 183
           L+HLH + +II+ DLKPENVLL
Sbjct: 302 LEHLH-QRNIIYRDLKPENVLL 322

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 14/81 (17%)

Query: 305 CKLVDFGNACWTYKQFTNDIQTRQYRC-------PEVLLGSKYSTPADLWSFACICFELA 357
            ++ D G A     +        +          PE+LLG +Y    D ++     +E+ 
Sbjct: 328 VRISDLGLA----VELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMI 383

Query: 358 TGDVLFDPHSGDNYDRDEDHL 378
                  P        +   L
Sbjct: 384 AARG---PFRARGEKVENKEL 401

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 44/152 (28%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKV-QKS---AQHYTEAALDEIKILKQIAEGDPDDKKC 105
           LG G F  V L  +  T  Y A+K+ +K    A+      + E ++L+          + 
Sbjct: 13  LGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT--------RH 64

Query: 106 --VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICF----- 156
             +  L   F+        +C V EY   GE L              H+ +E  F     
Sbjct: 65  PFLTALKYAFQ----THDRLCFVMEYANGGE-LFF------------HLSRERVFTEERA 107

Query: 157 -----HILVGLDHLHRELSIIHTDLKPENVLL 183
                 I+  L++LH    +++ D+K EN++L
Sbjct: 108 RFYGAEIVSALEYLH-SRDVVYRDIKLENLML 138

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 43/152 (28%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKV-QKS---AQHYTEAALDEIKILKQIAEGDPDDKKC 105
           +G G F  V LA       + A+KV QK     +   +  + E  +L +         K 
Sbjct: 46  IGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNV-------KH 98

Query: 106 --VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICF----- 156
             +V L   F+        +  V +Y+  GE L              H+ +E CF     
Sbjct: 99  PFLVGLHFSFQ----TADKLYFVLDYINGGE-LFY------------HLQRERCFLEPRA 141

Query: 157 -----HILVGLDHLHRELSIIHTDLKPENVLL 183
                 I   L +LH  L+I++ DLKPEN+LL
Sbjct: 142 RFYAAEIASALGYLH-SLNIVYRDLKPENILL 172

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 50.2 bits (121), Expect = 6e-07
 Identities = 41/154 (26%), Positives = 60/154 (38%), Gaps = 46/154 (29%)

Query: 50  LGWGHFSTVWLA---WDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDK 103
           LG G F  V+L      +      A+KV K A            E  IL ++        
Sbjct: 32  LGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEV-------- 83

Query: 104 KC--VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH-- 157
               +VKL   F+        + ++ ++L  G+ L T             + KE+ F   
Sbjct: 84  NHPFIVKLHYAFQ----TEGKLYLILDFLRGGD-LFT------------RLSKEVMFTEE 126

Query: 158 --------ILVGLDHLHRELSIIHTDLKPENVLL 183
                   + + LDHLH  L II+ DLKPEN+LL
Sbjct: 127 DVKFYLAELALALDHLH-SLGIIYRDLKPENILL 159

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 19/146 (13%)

Query: 47  QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCV 106
                 G F  VW A       YVA+K+       +     E+  L  +        + +
Sbjct: 29  LEVKARGRFGCVWKAQLLNE--YVAVKIFPIQDKQSWQNEYEVYSLPGM------KHENI 80

Query: 107 VKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH 166
           ++ +   K        + ++  +  E   +L  +     V  + +  I   +  GL +LH
Sbjct: 81  LQFIGAEKRGTSVDVDLWLITAFH-EKG-SLSDFLKANVVSWNELCHIAETMARGLAYLH 138

Query: 167 RELS---------IIHTDLKPENVLL 183
            ++          I H D+K +NVLL
Sbjct: 139 EDIPGLKDGHKPAISHRDIKSKNVLL 164

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 43/152 (28%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           LG G F  V+LA   +T+ + A+K  K          E  + E ++L           + 
Sbjct: 25  LGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-------EH 77

Query: 106 --VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH---- 157
             +  +   F+      +++  V EYL  G+ L+             H+     F     
Sbjct: 78  PFLTHMFCTFQ----TKENLFFVMEYLNGGD-LMY------------HIQSCHKFDLSRA 120

Query: 158 ------ILVGLDHLHRELSIIHTDLKPENVLL 183
                 I++GL  LH    I++ DLK +N+LL
Sbjct: 121 TFYAAEIILGLQFLH-SKGIVYRDLKLDNILL 151

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 35/152 (23%), Positives = 54/152 (35%), Gaps = 43/152 (28%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           LG G F  V L+    T    A+K+ K          E  + E ++L           K 
Sbjct: 28  LGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPG-------KP 80

Query: 106 --VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH---- 157
             + +L   F+        +  V EY+  G+ L+             H+ +   F     
Sbjct: 81  PFLTQLHSCFQ----TMDRLYFVMEYVNGGD-LMY------------HIQQVGRFKEPHA 123

Query: 158 ------ILVGLDHLHRELSIIHTDLKPENVLL 183
                 I +GL  L     II+ DLK +NV+L
Sbjct: 124 VFYAAEIAIGLFFLQ-SKGIIYRDLKLDNVML 154

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 37/152 (24%), Positives = 54/152 (35%), Gaps = 43/152 (28%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           LG G F  V LA   +T    A+KV K          E  + E +IL             
Sbjct: 31  LGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLAR-------NH 83

Query: 106 --VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH---- 157
             + +L   F+        +  V E++  G+             +  H+ K   F     
Sbjct: 84  PFLTQLFCCFQ----TPDRLFFVMEFVNGGD-------------LMFHIQKSRRFDEARA 126

Query: 158 ------ILVGLDHLHRELSIIHTDLKPENVLL 183
                 I+  L  LH +  II+ DLK +NVLL
Sbjct: 127 RFYAAEIISALMFLH-DKGIIYRDLKLDNVLL 157

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 46/153 (30%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILKQIAEGDPDD 102
           +G G F  V +     T    A+K        +++          E++I++ +      +
Sbjct: 23  IGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNV---FKELQIMQGL------E 73

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH--- 157
              +V L   F+    + + + MV + L  G+ L              H+ + + F    
Sbjct: 74  HPFLVNLWYSFQ----DEEDMFMVVDLLLGGD-LRY------------HLQQNVHFKEET 116

Query: 158 -------ILVGLDHLHRELSIIHTDLKPENVLL 183
                  +++ LD+L     IIH D+KP+N+LL
Sbjct: 117 VKLFICELVMALDYLQ-NQRIIHRDMKPDNILL 148

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 48/156 (30%)

Query: 50  LGWGHFSTVWLA---WDTQTSHYVALKVQKSA---QHYTEAA--LDEIKILKQIAEGDPD 101
           LG G +  V+         T    A+KV K A   ++  + A    E  IL+++      
Sbjct: 25  LGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV------ 78

Query: 102 DKKC--VVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICF- 156
             K   +V L+  F+     G  + ++ EYL  GE L               + +E  F 
Sbjct: 79  --KHPFIVDLIYAFQ----TGGKLYLILEYLSGGE-LFM------------QLEREGIFM 119

Query: 157 ---------HILVGLDHLHRELSIIHTDLKPENVLL 183
                     I + L HLH +  II+ DLKPEN++L
Sbjct: 120 EDTACFYLAEISMALGHLH-QKGIIYRDLKPENIML 154

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 52/208 (25%)

Query: 3   EDSNGDRSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQS----K-LGWGHFST 57
           E+               +G E      +       T    +  +++    K LG G +  
Sbjct: 10  EEGGSSGGAAGTSADGGDGGEQLLTVKHELRTANLTGHAEKVGIENFELLKVLGTGAYGK 69

Query: 58  VWLA---WDTQTSHYVALKVQKSA-----QHYTEAALDEIKILKQIAEGDPDDKKC--VV 107
           V+L        T    A+KV K A        TE    E ++L+ I       ++   +V
Sbjct: 70  VFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHI-------RQSPFLV 122

Query: 108 KLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFH-------- 157
            L   F+        + ++ +Y+  GE L T            H+ +   F         
Sbjct: 123 TLHYAFQ----TETKLHLILDYINGGE-LFT------------HLSQRERFTEHEVQIYV 165

Query: 158 --ILVGLDHLHRELSIIHTDLKPENVLL 183
             I++ L+HLH +L II+ D+K EN+LL
Sbjct: 166 GEIVLALEHLH-KLGIIYRDIKLENILL 192

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 32/151 (21%)

Query: 47  QSKLGWGHFSTVWLA-WDT---QTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPD 101
             +LG G+F +V +  +D     T   VA+K  Q S + +      EI+ILK +      
Sbjct: 15  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL------ 68

Query: 102 DKKCVVKLLDHFKHSG----PNGQHVCMVFEYL--GENLLT-LIKYADYRGVP--LHMVK 152
               +VK        G       +++ ++ EYL  G +L   L K+ +       L    
Sbjct: 69  QHDNIVKYK------GVCYSAGRRNLKLIMEYLPYG-SLRDYLQKHKERIDHIKLLQYTS 121

Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           +IC     G+++L      IH DL   N+L+
Sbjct: 122 QICK----GMEYLG-TKRYIHRDLATRNILV 147

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 14/137 (10%)

Query: 49  KLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVV 107
           KLG G +  V+   W   +   VA+K  K      E  L E  ++K+I          +V
Sbjct: 227 KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLV 279

Query: 108 KLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH 166
           +LL       P      ++ E++   NLL  ++  + + V   ++  +   I   +++L 
Sbjct: 280 QLLGVCTREPP----FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 335

Query: 167 RELSIIHTDLKPENVLL 183
           ++ + IH +L   N L+
Sbjct: 336 KK-NFIHRNLAARNCLV 351

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 30/150 (20%)

Query: 47  QSKLGWGHFSTVWLA-WDT---QTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPD 101
             +LG G+F +V +  +D     T   VA+K  Q S + +      EI+ILK +      
Sbjct: 46  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL------ 99

Query: 102 DKKCVVKLLDHFKHSG----PNGQHVCMVFEYLGE-NLLT-LIKYADYRGVP--LHMVKE 153
               +VK        G       +++ ++ EYL   +L   L K+ +       L    +
Sbjct: 100 QHDNIVKYK------GVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQ 153

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           IC     G+++L      IH DL   N+L+
Sbjct: 154 ICK----GMEYLG-TKRYIHRDLATRNILV 178

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 31/153 (20%)

Query: 45  VVQSKLGWGHFSTVWLA-WDT---QTSHYVALKVQK--SAQHYTEAALDEIKILKQIAEG 98
                LG GHF  V L  +D     T   VA+K  K  S  ++      EI+IL+ +   
Sbjct: 24  KRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL--- 80

Query: 99  DPDDKKCVVKLLDHFKHSG----PNGQHVCMVFEYLGE-NLLT-LIKYADYRGVP--LHM 150
                + +VK        G      G  + ++ E+L   +L   L K  +   +   L  
Sbjct: 81  ---YHENIVKYK------GICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKY 131

Query: 151 VKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             +IC     G+D+L      +H DL   NVL+
Sbjct: 132 AVQICK----GMDYLG-SRQYVHRDLAARNVLV 159

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 41/151 (27%)

Query: 50  LGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEGDPDDKKC 105
           LG G F  V L+    T    A+K+ K          E  + E ++L           K 
Sbjct: 349 LGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPG-------KP 401

Query: 106 --VVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICF------ 156
             + +L   F+        +  V EY+ G +L+             H+ +   F      
Sbjct: 402 PFLTQLHSCFQ----TMDRLYFVMEYVNGGDLMY------------HIQQVGRFKEPHAV 445

Query: 157 ----HILVGLDHLHRELSIIHTDLKPENVLL 183
                I +GL  L     II+ DLK +NV+L
Sbjct: 446 FYAAEIAIGLFFLQ-SKGIIYRDLKLDNVML 475

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 24/145 (16%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
            ++ KLG G F  VW+A ++  T   VA+K  K      EA L E  ++K +        
Sbjct: 191 KLEKKLGAGQFGEVWMATYNKHTK--VAVKTMKPGSMSVEAFLAEANVMKTL------QH 242

Query: 104 KCVVKLLDHFKHSGPNG----QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHI 158
             +VKL               + + ++ E++   +LL  +K  +    PL  + +    I
Sbjct: 243 DKLVKLH---------AVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQI 293

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
             G+  +  + + IH DL+  N+L+
Sbjct: 294 AEGMAFIE-QRNYIHRDLRAANILV 317

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 39/151 (25%), Positives = 53/151 (35%), Gaps = 33/151 (21%)

Query: 47  QSKLGWGHFSTVWLA-WD---TQTSHYVALKVQKSAQHYTEAA----LDEIKILKQIAEG 98
              LG GHF  V L  +D     T   VA+K  K+              EI IL+ +   
Sbjct: 36  IRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKA--DAGPQHRSGWKQEIDILRTL--- 90

Query: 99  DPDDKKCVVKLLDHFKHSG----PNGQHVCMVFEY--LGENLLTLIKYADYRGVPLHMVK 152
                + ++K        G         + +V EY  LG     L  Y     + L  + 
Sbjct: 91  ---YHEHIIKYK------GCCEDAGAASLQLVMEYVPLGS----LRDYLPRHSIGLAQLL 137

Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENVLL 183
                I  G+ +LH     IH DL   NVLL
Sbjct: 138 LFAQQICEGMAYLH-AQHYIHRDLAARNVLL 167

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 30/150 (20%)

Query: 47  QSKLGWGHFSTVWLA-WDT---QTSHYVALKVQKSAQHYTEAA-LDEIKILKQIAEGDPD 101
            S+LG G+F +V L  +D     T   VA+K  + +    +     EI+ILK +      
Sbjct: 28  ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKAL------ 81

Query: 102 DKKCVVKLLDHFKHSG----PNGQHVCMVFEYLGE-NLLT-LIKYADYRGVP--LHMVKE 153
               +VK        G    P  Q + +V EYL    L   L ++         L    +
Sbjct: 82  HSDFIVKYR------GVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQ 135

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLL 183
           IC     G+++L      +H DL   N+L+
Sbjct: 136 IC----KGMEYLG-SRRCVHRDLAARNILV 160

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 18/142 (12%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
            ++ KLG G F  VW+  W+  T   VA+K  K      EA L E +++K++        
Sbjct: 187 RLEVKLGQGCFGEVWMGTWNGTTR--VAIKTLKPGTMSPEAFLQEAQVMKKL------RH 238

Query: 104 KCVVKLLDHFKHSGP-NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVG 161
           + +V+L          + + + +V EY+   +LL  +K    + + L  + ++   I  G
Sbjct: 239 EKLVQLY------AVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASG 292

Query: 162 LDHLHRELSIIHTDLKPENVLL 183
           + ++   ++ +H DL+  N+L+
Sbjct: 293 MAYVE-RMNYVHRDLRAANILV 313

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 16/140 (11%)

Query: 46  VQSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKK 104
           ++ KLG G F  VW+  W+  T   VA+K  K      EA L E +++K++        +
Sbjct: 271 LEVKLGQGCFGEVWMGTWNGTTR--VAIKTLKPGTMSPEAFLQEAQVMKKL------RHE 322

Query: 105 CVVKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLD 163
            +V+L         + + + +V EY+ + +LL  +K    + + L  + ++   I  G+ 
Sbjct: 323 KLVQLYAVV-----SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMA 377

Query: 164 HLHRELSIIHTDLKPENVLL 183
           ++   ++ +H DL+  N+L+
Sbjct: 378 YVE-RMNYVHRDLRAANILV 396

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
            +   +G G F  V L  +       VA+K  K+     +A L E  ++ Q+        
Sbjct: 196 KLLQTIGKGEFGDVMLGDYRGNK---VAVKCIKNDAT-AQAFLAEASVMTQL------RH 245

Query: 104 KCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
             +V+LL            + +V EY+   +L+  ++      +    + +    +   +
Sbjct: 246 SNLVQLLGVIVEEKGG---LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAM 302

Query: 163 DHLHRELSIIHTDLKPENVLL 183
           ++L    + +H DL   NVL+
Sbjct: 303 EYLE-GNNFVHRDLAARNVLV 322

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 24/141 (17%)

Query: 49  KLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVV 107
           +LG G F  VW+  ++  T   VA+K  K      +A L E  ++KQ+        + +V
Sbjct: 20  RLGAGQFGEVWMGYYNGHTK--VAVKSLKQGSMSPDAFLAEANLMKQL------QHQRLV 71

Query: 108 KLLDHFKHSGPNG----QHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGL 162
           +L               + + ++ EY+   +L+  +K      + ++ + ++   I  G+
Sbjct: 72  RLY---------AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 122

Query: 163 DHLHRELSIIHTDLKPENVLL 183
             +    + IH DL+  N+L+
Sbjct: 123 AFIEER-NYIHRDLRAANILV 142

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 12/136 (8%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVK 108
           KLG G +  V+     + S  VA+K  K      E  L E  ++K+I          +V+
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-----KHPN-LVQ 73

Query: 109 LLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR 167
           LL       P      ++ E++   NLL  ++  + + V   ++  +   I   +++L +
Sbjct: 74  LLGVCTREPP----FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK 129

Query: 168 ELSIIHTDLKPENVLL 183
           + + IH DL   N L+
Sbjct: 130 K-NFIHRDLAARNCLV 144

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 16/136 (11%)

Query: 49  KLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVV 107
           ++G G F  V L  W  +    VA+K  +      E  ++E +++ ++          +V
Sbjct: 15  EIGSGQFGLVHLGYWLNKDK--VAIKTIREGAMSEEDFIEEAEVMMKL------SHPKLV 66

Query: 108 KLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH 166
           +L        P    +C+V E++    L   ++          ++  +C  +  G+ +L 
Sbjct: 67  QLYGVCLEQAP----ICLVTEFMEHGCLSDYLRTQRGLFAAETLL-GMCLDVCEGMAYL- 120

Query: 167 RELSIIHTDLKPENVL 182
            E  +IH DL   N L
Sbjct: 121 EEACVIHRDLAARNCL 136

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 28/145 (19%)

Query: 49  KLGWGHFSTVWLA-WDTQTSHY-VALKVQK---SAQHYTEAALDEIKILKQIAEGDPDDK 103
           +LG G+F TV    +  +     VA+K+ K   +     +  L E  +++Q+      D 
Sbjct: 24  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL------DN 77

Query: 104 KCVVKLLDHFKHSGPNG----QHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHI 158
             +V+++         G    +   +V E      L   ++    R V    + E+   +
Sbjct: 78  PYIVRMI---------GICEAESWMLVMEMAELGPLNKYLQ--QNRHVKDKNIIELVHQV 126

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
            +G+ +L  E + +H DL   NVLL
Sbjct: 127 SMGMKYL-EESNFVHRDLAARNVLL 150

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 20/145 (13%)

Query: 45  VVQSKLGWGHFSTVWLA-WDTQTSHY-VALKVQK--SAQHYTEAALDEIKILKQIAEGDP 100
           +   +LG G+F +V    +  +     VA+KV K  + +  TE  + E +I+ Q+     
Sbjct: 339 IADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL----- 393

Query: 101 DDKKCVVKLLDHFKHSGP-NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHI 158
            D   +V+L+      G    + + +V E   G  L   +       +P+  V E+   +
Sbjct: 394 -DNPYIVRLI------GVCQAEALMLVMEMAGGGPLHKFLVGKREE-IPVSNVAELLHQV 445

Query: 159 LVGLDHLHRELSIIHTDLKPENVLL 183
            +G+ +L  E + +H +L   NVLL
Sbjct: 446 SMGMKYL-EEKNFVHRNLAARNVLL 469

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 18/137 (13%)

Query: 49  KLGWGHFSTVWLA-WDTQTSHYVALKVQKSAQHYTEAA-LDEIKILKQIAEGDPDDKKCV 106
            +G G F  V L  +       VA+K  K     T  A L E  ++ Q+          +
Sbjct: 28  TIGKGEFGDVMLGDYRGNK---VAVKCIK--NDATAQAFLAEASVMTQL-----RHSN-L 76

Query: 107 VKLLDHFKHSGPNGQHVCMVFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDHL 165
           V+LL            + +V EY+ + +L+  ++      +    + +    +   +++L
Sbjct: 77  VQLLGVIVEEKGG---LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL 133

Query: 166 HRELSIIHTDLKPENVL 182
               + +H DL   NVL
Sbjct: 134 E-GNNFVHRDLAARNVL 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	530
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.97
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.93
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.9
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.83
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.72
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.29
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.09
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.95
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.81
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.44
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.34
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.29
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.17
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.06
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.03
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.93
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.87
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.32
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.31
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.1
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.82
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.75
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.74
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.72
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.7
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.67
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.56
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	96.38
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.67
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.58
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	95.29
3mes_A	424	Choline kinase; malaria, structural genomics, stru	94.47
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	90.91

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.9e-61  Score=472.98  Aligned_cols=254  Identities=27%  Similarity=0.428  Sum_probs=200.7

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      |..+  ++|++++.||+|+||+||+|+++.+|+.||||++.+..    .....+.+|+++|++|      +|||||++++
T Consensus         9 G~~i--g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~~~~   80 (275)
T 3hyh_A            9 GAHI--GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLL------RHPHIIKLYD   80 (275)
T ss_dssp             -------CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHC------CCTTBCCEEE
T ss_pred             CCEe--eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHC------CCCCCCeEEE
Confidence            5555  78999999999999999999999999999999987542    3345788999999999      7899999999


Q ss_pred             eeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +|.    +...+|||||||+|+|.+++..  ...+++..++.|+.||+.||+|||++ |||||||||+||||+.      
T Consensus        81 ~~~----~~~~~~ivmEy~~g~L~~~l~~--~~~l~e~~~~~~~~qi~~al~ylH~~-~IiHRDiKP~NILl~~------  147 (275)
T 3hyh_A           81 VIK----SKDEIIMVIEYAGNELFDYIVQ--RDKMSEQEARRFFQQIISAVEYCHRH-KIVHRDLKPENLLLDE------  147 (275)
T ss_dssp             EEE----CSSEEEEEEECCCEEHHHHHHH--SCSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTTEEECT------
T ss_pred             EEE----ECCEEEEEEeCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCChHHeEECC------
Confidence            998    4579999999999999999974  34599999999999999999999997 9999999999999955      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (275)
T 3hyh_A          148 --------------------------------------------------------------------------------  147 (275)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCC-CCcchhHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKY-STPADLWS  348 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~-~~~~DiWS  348 (530)
                                                    ++.+||+|||+|+....  ...+.+||+.|||||++.+..| +.++||||
T Consensus       148 ------------------------------~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwS  197 (275)
T 3hyh_A          148 ------------------------------HLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWS  197 (275)
T ss_dssp             ------------------------------TCCEEECCSSCC---------------CTTSCHHHHSSSSCCCTHHHHHH
T ss_pred             ------------------------------CCCEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHH
Confidence                                          46799999999976432  3456789999999999998886 68999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|++||.+.+      ......                                          .+....+
T Consensus       198 lGvily~lltg~~PF~~~~------~~~~~~------------------------------------------~i~~~~~  229 (275)
T 3hyh_A          198 CGVILYVMLCRRLPFDDES------IPVLFK------------------------------------------NISNGVY  229 (275)
T ss_dssp             HHHHHHHHHHSSCSSCCSS------HHHHHH------------------------------------------HHHHTCC
T ss_pred             HHHHHHHHHHCCCCCCCCC------HHHHHH------------------------------------------HHHcCCC
Confidence            9999999999999996432      111111                                          1112223


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .++...++++++||.+||+.||.+|||++|+|+||||+..
T Consensus       230 ~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k~~  269 (275)
T 3hyh_A          230 TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVD  269 (275)
T ss_dssp             CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHccCChhHCcCHHHHHcCcccccC
Confidence            4455678899999999999999999999999999999854

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.3e-61  Score=488.39  Aligned_cols=254  Identities=22%  Similarity=0.371  Sum_probs=209.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|+++++||+|+||+||+|+++.+|+.||||++.+..   ...+.+.+|+++|++|      +|||||+++++|.+   
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIV~~~~~~~~---   94 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANM------KHPNIVQYRESFEE---   94 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEE---
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHC------CCCCCCcEEEEEEE---
Confidence            79999999999999999999999999999999987543   3356788999999999      78999999999994   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ...+||||||| +|+|.+++.......+++..++.|+.||+.||+|||++ |||||||||+||||+.            
T Consensus        95 -~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl~~------------  160 (350)
T 4b9d_A           95 -NGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR-KILHRDIKSQNIFLTK------------  160 (350)
T ss_dssp             -TTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TCEETTCCGGGEEECT------------
T ss_pred             -CCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCCHHHEEECC------------
Confidence             47899999999 89999999866656689999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (350)
T 4b9d_A          161 --------------------------------------------------------------------------------  160 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                              ++.+||+|||+|+.....   .+..+||+.|||||++.+..|+.++|||||||+||
T Consensus       161 ------------------------~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvily  216 (350)
T 4b9d_A          161 ------------------------DGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLY  216 (350)
T ss_dssp             ------------------------TCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHH
Confidence                                    567999999999765432   34568999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      ||++|++||.+.+      ..+.+..+..  +..                                       ...+..+
T Consensus       217 emltG~~PF~~~~------~~~~~~~i~~--~~~---------------------------------------~~~~~~~  249 (350)
T 4b9d_A          217 ELCTLKHAFEAGS------MKNLVLKIIS--GSF---------------------------------------PPVSLHY  249 (350)
T ss_dssp             HHHHSSCSCCCSS------HHHHHHHHHH--TCC---------------------------------------CCCCTTS
T ss_pred             HHHHCCCCCCCcC------HHHHHHHHHc--CCC---------------------------------------CCCCccC
Confidence            9999999996543      2222222211  111                                       0223456


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ++++.+||.+||+.||.+|||++|+|+||||+...
T Consensus       250 s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~~  284 (350)
T 4b9d_A          250 SYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKRI  284 (350)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTTG
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhcCHHhhcCC
Confidence            78999999999999999999999999999998653

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=2.2e-60  Score=478.79  Aligned_cols=253  Identities=23%  Similarity=0.402  Sum_probs=213.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ..|+++++||+|+||+||+|+++.+|+.||||++.... ...+.+.+|+.+|++|      +|||||+++++|..    .
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l------~HpnIV~l~~~~~~----~  143 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY------QHENVVEMYNSYLV----G  143 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHC------CCTTBCCEEEEEEE----T
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhC------CCCCCCcEEEEEEE----C
Confidence            57999999999999999999999999999999986543 3456788999999999      78999999999994    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+||||||| +|+|.+++..   ..+++..++.|+.||+.||+|||++ |||||||||+||||+.              
T Consensus       144 ~~~~ivmEy~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl~~--------------  205 (346)
T 4fih_A          144 DELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ-GVIHRDIKSDSILLTH--------------  205 (346)
T ss_dssp             TEEEEEECCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT--------------
T ss_pred             CEEEEEEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCCHHHEEECC--------------
Confidence            7899999999 8999998864   3499999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       206 --------------------------------------------------------------------------------  205 (346)
T 4fih_A          206 --------------------------------------------------------------------------------  205 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            ++.+||+|||+|+....   .....+||+.|||||++.+..|+.++|||||||++|||
T Consensus       206 ----------------------~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyem  263 (346)
T 4fih_A          206 ----------------------DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEM  263 (346)
T ss_dssp             ----------------------TCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHH
Confidence                                  56799999999976432   34677999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|.+||.+.+      ....+..+..   ..+.                                    .+..+..+++
T Consensus       264 l~G~~PF~~~~------~~~~~~~i~~---~~~~------------------------------------~~~~~~~~s~  298 (346)
T 4fih_A          264 VDGEPPYFNEP------PLKAMKMIRD---NLPP------------------------------------RLKNLHKVSP  298 (346)
T ss_dssp             HHSSCTTTTSC------HHHHHHHHHH---SSCC------------------------------------CCSCGGGSCH
T ss_pred             HHCCCCCCCcC------HHHHHHHHHc---CCCC------------------------------------CCCccccCCH
Confidence            99999996432      2222222211   1110                                    0112235678


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ++++||.+||+.||.+|||+.|+|+||||+...
T Consensus       299 ~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~  331 (346)
T 4fih_A          299 SLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG  331 (346)
T ss_dssp             HHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHhcCHhhcCCC
Confidence            999999999999999999999999999998754

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=2.8e-61  Score=478.37  Aligned_cols=251  Identities=28%  Similarity=0.413  Sum_probs=215.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|+++++||+|+||+||+|+++.+|+.||||++.+.    ....+.+.+|+++|++|      +|||||+++++|.  
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~~~~~--  102 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL------DHPFFVKLYFTFQ--  102 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC------CCTTBCCEEEEEE--
T ss_pred             ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEE--
Confidence            46799999999999999999999999999999998754    23456788999999999      7899999999999  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        +...+||||||| ||+|.+++...  +.+++..++.|+.||+.||+|||++ |||||||||+||||+.          
T Consensus       103 --~~~~~yivmEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~~-~IiHRDlKPeNILl~~----------  167 (311)
T 4aw0_A          103 --DDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGK-GIIHRDLKPENILLNE----------  167 (311)
T ss_dssp             --CSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT----------
T ss_pred             --eCCEEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCCHHHeEEcC----------
Confidence              557999999999 89999999754  4599999999999999999999997 9999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (311)
T 4aw0_A          168 --------------------------------------------------------------------------------  167 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                ++.+||+|||+|+....     ...+.+||+.|||||++.+..|+.++||||||
T Consensus       168 --------------------------~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlG  221 (311)
T 4aw0_A          168 --------------------------DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALG  221 (311)
T ss_dssp             --------------------------TSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHH
T ss_pred             --------------------------CCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHH
Confidence                                      56799999999976431     24567899999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+.+      ....+.                                          .+....+.+
T Consensus       222 vilyeml~G~~PF~~~~------~~~~~~------------------------------------------~i~~~~~~~  253 (311)
T 4aw0_A          222 CIIYQLVAGLPPFRAGN------EGLIFA------------------------------------------KIIKLEYDF  253 (311)
T ss_dssp             HHHHHHHHSSCSSCCSS------HHHHHH------------------------------------------HHHHTCCCC
T ss_pred             HHHHHHHhCCCCCCCCC------HHHHHH------------------------------------------HHHcCCCCC
Confidence            99999999999996433      112222                                          222333455


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHH------HhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQ------CLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~e------lL~hp~f~~~  468 (530)
                      +...++++++||.+||+.||.+|||++|      +++||||+.-
T Consensus       254 p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~i  297 (311)
T 4aw0_A          254 PEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESV  297 (311)
T ss_dssp             CTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTC
T ss_pred             CcccCHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCC
Confidence            6677889999999999999999999988      5889999853

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1e-58  Score=480.07  Aligned_cols=391  Identities=53%  Similarity=0.950  Sum_probs=294.7

Q ss_pred             CCCCCCCCccccCCCCCCCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHH
Q 045988            9 RSDVSDYTSEDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDE   88 (530)
Q Consensus         9 ~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~E   88 (530)
                      .+..+++++++|....|..|+|+|+.+|+.+ .++|++.++||+|+||+||+|++..+++.||||+++......+.+.+|
T Consensus         5 ~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E   83 (397)
T 1wak_A            5 EEILGSDDDEQEDPNDYCKGGYHLVKIGDLF-NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDE   83 (397)
T ss_dssp             -----------------CC--CCSSCTTCEE-TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHH
T ss_pred             hhhccCCcccccccccCCCCCceEEehhhhc-CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHH
Confidence            3444455677899999999999999999999 789999999999999999999999999999999998776667788999


Q ss_pred             HHHHHHhhcCCC--CCCcceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Q 045988           89 IKILKQIAEGDP--DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH  166 (530)
Q Consensus        89 i~il~~l~~~~~--~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH  166 (530)
                      +.+|+.+.+.+.  .+|+||++++++|...+..+.++||||||++++|.+.+.......+++..++.|+.||+.||+|||
T Consensus        84 ~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH  163 (397)
T 1wak_A           84 IRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH  163 (397)
T ss_dssp             HHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999987642  248999999999987655668999999999999999887665567999999999999999999999


Q ss_pred             hhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCC
Q 045988          167 RELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKP  246 (530)
Q Consensus       167 ~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (530)
                      ++.|||||||||+||||+....                              ......... ..........      ..
T Consensus       164 ~~~givHrDikp~NIll~~~~~------------------------------~~~~~~~~~-~~~~~~~~~~------~~  206 (397)
T 1wak_A          164 TKCRIIHTDIKPENILLSVNEQ------------------------------YIRRLAAEA-TEWQRSGAPP------PS  206 (397)
T ss_dssp             HTTCEECCCCSGGGEEECCCHH------------------------------HHHHHHHHH-C-----------------
T ss_pred             HhCCEecCCCCHHHeeEeccch------------------------------hhhhhhhhh-HHHhhcCCCC------CC
Confidence            8449999999999999964210                              000000000 0000000000      00


Q ss_pred             CCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCC
Q 045988          247 SSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQT  326 (530)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt  326 (530)
                      .+......           .........                   ...........++|+|||++..........+||
T Consensus       207 ~~~~~~~~-----------~~~~~~~~~-------------------~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt  256 (397)
T 1wak_A          207 GSAVSTAP-----------ATAGNFLVN-------------------PLEPKNAEKLKVKIADLGNACWVHKHFTEDIQT  256 (397)
T ss_dssp             ---------------------CCTTSCC-------------------TTSGGGGGGCCEEECCGGGCEETTBCSCSCCSC
T ss_pred             CCccccCC-----------ccccccccc-------------------ccccccccccceEeccccccccccccCccCCCC
Confidence            00000000           000000000                   000011124579999999998877777778999


Q ss_pred             CCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccccc
Q 045988          327 RQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH  406 (530)
Q Consensus       327 ~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  406 (530)
                      +.|+|||++.+..|+.++|||||||++|+|++|.+||.+.+........+.+..+...+|..|..++..+.+...+|...
T Consensus       257 ~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  336 (397)
T 1wak_A          257 RQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKK  336 (397)
T ss_dssp             GGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTT
T ss_pred             CcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCc
Confidence            99999999999999999999999999999999999999888777777788999999999999999998889999999999


Q ss_pred             CccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      +.+..+.....+.....+...+.++...++.+.+||.+||++||.+|||+.|+|+||||+.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  397 (397)
T 1wak_A          337 GDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS  397 (397)
T ss_dssp             SSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGGGGC
T ss_pred             cccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhCccccC
Confidence            9888888777777777888888888999999999999999999999999999999999973

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=5e-59  Score=459.67  Aligned_cols=258  Identities=22%  Similarity=0.380  Sum_probs=208.8

Q ss_pred             CCCE-EEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRY-VVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y-~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      +++| ++.++||+|+||+||+|+++.++..||+|++....   ...+.+.+|+++|++|      +|||||+++++|...
T Consensus        24 ~gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIV~~~~~~~~~   97 (290)
T 3fpq_A           24 DGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL------QHPNIVRFYDSWEST   97 (290)
T ss_dssp             TSSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTC------CCTTBCCEEEEEEEE
T ss_pred             CCceEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhC------CCCCCCcEEEEEeec
Confidence            4566 78889999999999999999999999999886542   3346688999999999      789999999999865


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--ceeccCCCCcEEEeeccCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELS--IIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~g--IvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      ......+||||||| +|+|.+++...  ..+++..++.|+.||+.||+|||++ |  ||||||||+||||+..       
T Consensus        98 ~~~~~~~~lvmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~-------  167 (290)
T 3fpq_A           98 VKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGP-------  167 (290)
T ss_dssp             ETTEEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESST-------
T ss_pred             cCCCcEEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECC-------
Confidence            43457899999999 89999999753  4599999999999999999999997 8  9999999999999531       


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (290)
T 3fpq_A          168 --------------------------------------------------------------------------------  167 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-cCCCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                                  ++.+||+|||+|+..... ....+||+.|||||++.+ .|+.++|||||||+
T Consensus       168 ----------------------------~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvi  218 (290)
T 3fpq_A          168 ----------------------------TGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMC  218 (290)
T ss_dssp             ----------------------------TSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHH
T ss_pred             ----------------------------CCCEEEEeCcCCEeCCCCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHH
Confidence                                        357999999999764333 445689999999999876 69999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      ||||++|++||.+..      ....+...+. -+..|.                                      .++.
T Consensus       219 lyelltg~~Pf~~~~------~~~~~~~~i~-~~~~~~--------------------------------------~~~~  253 (290)
T 3fpq_A          219 MLEMATSEYPYSECQ------NAAQIYRRVT-SGVKPA--------------------------------------SFDK  253 (290)
T ss_dssp             HHHHHHSSCTTTTCS------SHHHHHHHHT-TTCCCG--------------------------------------GGGG
T ss_pred             HHHHHHCCCCCCCCC------cHHHHHHHHH-cCCCCC--------------------------------------CCCc
Confidence            999999999996432      2222211110 001110                                      1223


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ..++++.+||.+||+.||.+|||++|+|+||||++.
T Consensus       254 ~~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~~  289 (290)
T 3fpq_A          254 VAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEE  289 (290)
T ss_dssp             CCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC--
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHhcCccccCC
Confidence            346789999999999999999999999999999853

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=3.6e-59  Score=481.26  Aligned_cols=253  Identities=23%  Similarity=0.402  Sum_probs=213.7

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ..|+++++||+|+||+||+|+++.+|+.||||++.... ...+.+.+|+.+|+.|      +|||||+++++|..    .
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l------~HpnIV~l~~~~~~----~  220 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY------QHENVVEMYNSYLV----G  220 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHC------CCTTBCCEEEEEEE----T
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhC------CCCCCCceEEEEEE----C
Confidence            57999999999999999999999999999999987543 3456788999999999      78999999999994    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+||||||| ||+|.+++..   ..+++..++.|+.||+.||+|||++ |||||||||+||||+.              
T Consensus       221 ~~~~iVmEy~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~-~IiHRDiKp~NILl~~--------------  282 (423)
T 4fie_A          221 DELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ-GVIHRDIKSDSILLTH--------------  282 (423)
T ss_dssp             TEEEEEEECCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSTTTEEECT--------------
T ss_pred             CEEEEEEeCCCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHC-CeecccCCHHHEEEcC--------------
Confidence            7899999999 8999999864   3499999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       283 --------------------------------------------------------------------------------  282 (423)
T 4fie_A          283 --------------------------------------------------------------------------------  282 (423)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            ++.+||+|||+|+....   .....+||+.|||||++.+..|+.++|||||||++|||
T Consensus       283 ----------------------~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyem  340 (423)
T 4fie_A          283 ----------------------DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEM  340 (423)
T ss_dssp             ----------------------TCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHH
Confidence                                  56799999999976432   34677899999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|.+||.+.+      ....+..+..   ..+.                                    .+..+..+++
T Consensus       341 l~G~~PF~~~~------~~~~~~~i~~---~~~~------------------------------------~~~~~~~~s~  375 (423)
T 4fie_A          341 VDGEPPYFNEP------PLKAMKMIRD---NLPP------------------------------------RLKNLHKVSP  375 (423)
T ss_dssp             HHSSCTTTTSC------HHHHHHHHHH---SCCC------------------------------------CCSCTTSSCH
T ss_pred             HHCCCCCCCcC------HHHHHHHHHc---CCCC------------------------------------CCcccccCCH
Confidence            99999996432      2222222211   1110                                    0112335678


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ++++||.+||+.||.+|||+.|+|+||||+...
T Consensus       376 ~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~  408 (423)
T 4fie_A          376 SLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG  408 (423)
T ss_dssp             HHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHhcCHHhcCCC
Confidence            999999999999999999999999999998653

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.9e-58  Score=473.94  Aligned_cols=288  Identities=27%  Similarity=0.395  Sum_probs=228.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|+++++||+|+||+||+|+++.+|+.||||++++..   .....+.+|+++|+.|      +|||||++++++....
T Consensus        53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~l~~~~~~~~  126 (398)
T 4b99_A           53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHF------KHDNIIAIKDILRPTV  126 (398)
T ss_dssp             CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHC------CCTTBCCEEEECCCSS
T ss_pred             CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhc------CCCCcceEeeeeeccc
Confidence            468999999999999999999999999999999987643   2345678999999999      7899999999987532


Q ss_pred             --CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          118 --PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       118 --~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        .+...+|||||||+|+|.+++..  .+.+++..++.|++||+.||+|||++ |||||||||+|||++.          
T Consensus       127 ~~~~~~~~~ivmE~~~g~L~~~i~~--~~~l~~~~~~~~~~qil~al~ylH~~-~iiHRDlKP~NIl~~~----------  193 (398)
T 4b99_A          127 PYGEFKSVYVVLDLMESDLHQIIHS--SQPLTLEHVRYFLYQLLRGLKYMHSA-QVIHRDLKPSNLLVNE----------  193 (398)
T ss_dssp             CTTTCCCEEEEEECCSEEHHHHHTS--SSCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEECT----------
T ss_pred             ccccCCEEEEEEeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-cCcCCCcCccccccCC----------
Confidence              24468999999998899999964  45699999999999999999999997 9999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (398)
T 4b99_A          194 --------------------------------------------------------------------------------  193 (398)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-------cccCCCCCCCCccCChhhcCCC-CCCcchhH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-------KQFTNDIQTRQYRCPEVLLGSK-YSTPADLW  347 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-------~~~~~~~gt~~y~aPE~l~~~~-~~~~~DiW  347 (530)
                                                ++.+||+|||+|+...       ....+.+||++|||||++.+.. |+.++|||
T Consensus       194 --------------------------~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiW  247 (398)
T 4b99_A          194 --------------------------NCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLW  247 (398)
T ss_dssp             --------------------------TCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHH
T ss_pred             --------------------------CCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhhee
Confidence                                      5679999999997532       2245679999999999998764 69999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||||+|||++|++||.+.+      ..+++..|....|.++...+.........       .......  +....... 
T Consensus       248 SlG~il~ell~G~~pF~g~~------~~~~l~~I~~~~g~p~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~-  311 (398)
T 4b99_A          248 SVGCIFGEMLARRQLFPGKN------YVHQLQLIMMVLGTPSPAVIQAVGAERVR-------AYIQSLP--PRQPVPWE-  311 (398)
T ss_dssp             HHHHHHHHHHHTSCSSCCSS------HHHHHHHHHHHHCCCCGGGTC-----CHH-------HHHHSSC--CCCCCCHH-
T ss_pred             hhHHHHHHHHHCCCCCCCCC------HHHHHHHHHHhcCCCChHHhhhhhhhhhh-------hhhhcCC--CcCCCCHH-
Confidence            99999999999999998655      78899999999999887665322111000       0000000  00000000 


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                       ......+++++|||.+||++||.+||||.|+|+||||+....
T Consensus       312 -~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~  353 (398)
T 4b99_A          312 -TVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHD  353 (398)
T ss_dssp             -HHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTCC
T ss_pred             -HhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCCC
Confidence             012345788999999999999999999999999999997654

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.5e-59  Score=465.66  Aligned_cols=251  Identities=26%  Similarity=0.377  Sum_probs=206.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeC---CCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      .++|++++.||+|+||+||+|++.   .+++.||||++++..   .....+.+|+++|++|      +|||||+++++|.
T Consensus        23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~~~~~   96 (304)
T 3ubd_A           23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEV------NHPFIVKLHYAFQ   96 (304)
T ss_dssp             GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCC------CCTTEECEEEEEE
T ss_pred             ccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHC------CCCCCCeEEEEEE
Confidence            368999999999999999999874   468999999987542   2344678899999888      7899999999999


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      +    ...+||||||| ||+|.+++...  +.+++..++.|+.||+.||+|||++ |||||||||+|||++.        
T Consensus        97 ~----~~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl~~--------  161 (304)
T 3ubd_A           97 T----EGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSL-GIIYRDLKPENILLDE--------  161 (304)
T ss_dssp             E----TTEEEEEECCCTTCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCCGGGEEECT--------
T ss_pred             E----CCEEEEEEEcCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCcCCCCCHHHeEEcC--------
Confidence            4    47899999999 89999999753  4599999999999999999999997 9999999999999955        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (304)
T 3ubd_A          162 --------------------------------------------------------------------------------  161 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                  ++.+||+|||+|+...   ....+.+||+.|||||++.+..|+.++||||||
T Consensus       162 ----------------------------~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlG  213 (304)
T 3ubd_A          162 ----------------------------EGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFG  213 (304)
T ss_dssp             ----------------------------TSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHH
T ss_pred             ----------------------------CCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchH
Confidence                                        5679999999997532   234567899999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|++||.+.+      ..+.+..+                                          ....+.+
T Consensus       214 vilyemltG~~PF~~~~------~~~~~~~i------------------------------------------~~~~~~~  245 (304)
T 3ubd_A          214 VLMFEMLTGTLPFQGKD------RKETMTMI------------------------------------------LKAKLGM  245 (304)
T ss_dssp             HHHHHHHHSSCSSCCSS------HHHHHHHH------------------------------------------HHCCCCC
T ss_pred             HHHHHHHhCCCCCCCcC------HHHHHHHH------------------------------------------HcCCCCC
Confidence            99999999999996543      12222222                                          2223345


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      +..+++++.+||.+||+.||.+|||     ++|+|+||||+.-
T Consensus       246 p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~i  288 (304)
T 3ubd_A          246 PQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTI  288 (304)
T ss_dssp             CTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTC
T ss_pred             CCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCccccCC
Confidence            5667889999999999999999998     5899999999853

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=6.3e-58  Score=459.57  Aligned_cols=252  Identities=25%  Similarity=0.295  Sum_probs=208.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .+.|++.++||+|+||+||+|+++.+|+.||||+++....    ..+|+.+|+.|      +|||||+++++|.+    +
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----~~~E~~il~~l------~HpnIV~l~~~~~~----~  122 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----RVEELVACAGL------SSPRIVPLYGAVRE----G  122 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CTHHHHTTTTC------CCTTBCCEEEEEEE----T
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh----HHHHHHHHHhC------CCCCCCcEEEEEEE----C
Confidence            3679999999999999999999999999999999986532    24799999988      78999999999984    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+||||||| +++|.+++...  +.+++..++.|+.||+.||+|||++ |||||||||+||||+.              
T Consensus       123 ~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl~~--------------  185 (336)
T 4g3f_A          123 PWVNIFMELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHTR-RILHGDVKADNVLLSS--------------  185 (336)
T ss_dssp             TEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCCGGGEEECT--------------
T ss_pred             CEEEEEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecccCHHHEEEeC--------------
Confidence            7899999999 89999999754  4599999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (336)
T 4g3f_A          186 --------------------------------------------------------------------------------  185 (336)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhccc-ceEEecCCcccccccc--------cCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDL-KCKLVDFGNACWTYKQ--------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~-~vkL~DfG~a~~~~~~--------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                            ++ .+||+|||+|+.....        ....+||+.|||||++.+..|+.++||||||
T Consensus       186 ----------------------~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlG  243 (336)
T 4g3f_A          186 ----------------------DGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSC  243 (336)
T ss_dssp             ----------------------TSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHH
T ss_pred             ----------------------CCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHH
Confidence                                  33 5999999999754321        2335799999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |+||||++|++||.+.+...      .+..+..  +..+                                     ...+
T Consensus       244 vilyemltG~~Pf~~~~~~~------~~~~i~~--~~~~-------------------------------------~~~~  278 (336)
T 4g3f_A          244 CMMLHMLNGCHPWTQYFRGP------LCLKIAS--EPPP-------------------------------------IREI  278 (336)
T ss_dssp             HHHHHHHHSSCSSTTTCCSC------CHHHHHH--SCCG-------------------------------------GGGS
T ss_pred             HHHHHHHHCcCCCCCCCHHH------HHHHHHc--CCCC-------------------------------------chhc
Confidence            99999999999997654221      1111111  0000                                     0124


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHH-------------hcCCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQC-------------LTHPWINVGPR  470 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~el-------------L~hp~f~~~~~  470 (530)
                      +..+++.+.+||.+||+.||.+|||+.|+             |+|||+.+..+
T Consensus       279 ~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~~~~  331 (336)
T 4g3f_A          279 PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEYKE  331 (336)
T ss_dssp             CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSSCCC
T ss_pred             CccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccCCCcCCCCC
Confidence            45678899999999999999999999997             67999986543

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=3.6e-57  Score=461.70  Aligned_cols=292  Identities=27%  Similarity=0.367  Sum_probs=218.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeC---CCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.++||+|+||+||+|+++   .+++.||||++..... ...+.+|+++|+.+.     +|||||+++++|..  
T Consensus        20 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~-~~~~~~E~~~l~~~~-----~h~nIv~l~~~~~~--   91 (361)
T 4f9c_A           20 SNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH-PIRIAAELQCLTVAG-----GQDNVMGVKYCFRK--   91 (361)
T ss_dssp             GGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC-HHHHHHHHHHHHHTC-----SBTTBCCCSEEEEE--
T ss_pred             cCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC-HHHHHHHHHHHHHhc-----CCCCCceEEEEEEE--
Confidence            468999999999999999999875   4678999998876543 556789999999884     68999999999994  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ..++||||||| +++|.+++.     .+++.+++.|++||+.||+|||++ |||||||||+|||++..          
T Consensus        92 --~~~~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~-gIiHRDiKPeNiLl~~~----------  153 (361)
T 4f9c_A           92 --NDHVVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQF-GIVHRDVKPSNFLYNRR----------  153 (361)
T ss_dssp             --TTEEEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEETT----------
T ss_pred             --CCEEEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHC-CeEeCcCCHHHeEEeCC----------
Confidence              57999999999 889999883     389999999999999999999997 99999999999999541          


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (361)
T 4f9c_A          154 --------------------------------------------------------------------------------  153 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-------------------------------ccCCCCC
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-------------------------------QFTNDIQ  325 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-------------------------------~~~~~~g  325 (530)
                                               .+.+||+|||+|+....                               ..+..+|
T Consensus       154 -------------------------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  208 (361)
T 4f9c_A          154 -------------------------LKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAG  208 (361)
T ss_dssp             -------------------------TTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCC
T ss_pred             -------------------------CCeEEECcCCCCcccCCcccccccccccccccccccccccccccccccccccccc
Confidence                                     25799999999964221                               1345689


Q ss_pred             CCCccCChhhcCCC-CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccc
Q 045988          326 TRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN  404 (530)
Q Consensus       326 t~~y~aPE~l~~~~-~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  404 (530)
                      |++|||||++.+.. |+.++||||+||++|+|++|++||.+.+     .+.+++..|..++|.++...+...........
T Consensus       209 T~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~-----~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~  283 (361)
T 4f9c_A          209 TPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKAS-----DDLTALAQIMTIRGSRETIQAAKTFGKSILCS  283 (361)
T ss_dssp             CGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCS-----SHHHHHHHHHHHHCHHHHHHHHHHTTEEEEES
T ss_pred             CccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCC-----CHHHHHHHHHHhcCCccchhhhhhcccccccc
Confidence            99999999998864 8999999999999999999999995433     36789999999999755433211110000000


Q ss_pred             cc---Cccccc----hhccc--CCc---hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          405 RH---GDLRHI----RRLRF--WPL---NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       405 ~~---~~~~~~----~~~~~--~~~---~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ..   ...+..    .....  ...   ..............+++++|||.+||++||.+||||+|+|+||||++-
T Consensus       284 ~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~Hp~f~~i  359 (361)
T 4f9c_A          284 KEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALLHPFFKDM  359 (361)
T ss_dssp             SCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGTTC
T ss_pred             ccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCC
Confidence            00   000000    00000  000   000011112344578899999999999999999999999999999853

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=3.7e-56  Score=457.39  Aligned_cols=337  Identities=51%  Similarity=0.943  Sum_probs=285.9

Q ss_pred             CCCCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCC---
Q 045988           24 DYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDP---  100 (530)
Q Consensus        24 ~~~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~---  100 (530)
                      +|.+|+|+|+..|+.+..++|++.+.||+|+||+||+|.+..+++.||||++.........+.+|+.+++++.+...   
T Consensus         1 ~y~~~~~~p~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~   80 (373)
T 1q8y_A            1 DYRPGGYHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKE   80 (373)
T ss_dssp             ------CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHH
T ss_pred             CCCCCCceeeecCCcccCCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccch
Confidence            48999999999999999999999999999999999999999999999999998766667788899999999976431   


Q ss_pred             --CCCcceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          101 --DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       101 --~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                        ..|+||+++++++...++.+..+++||||++++|.+++.......+++..+..++.||+.||+|||+++||+||||||
T Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp  160 (373)
T 1q8y_A           81 DSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKP  160 (373)
T ss_dssp             HHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSG
T ss_pred             hccccchHHHHHHHhhccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCCh
Confidence              128899999999997655666899999999999999998766667999999999999999999999844999999999


Q ss_pred             CcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 045988          179 ENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEP  258 (530)
Q Consensus       179 ~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (530)
                      +|||++.....                                                                     
T Consensus       161 ~NIll~~~~~~---------------------------------------------------------------------  171 (373)
T 1q8y_A          161 ENVLMEIVDSP---------------------------------------------------------------------  171 (373)
T ss_dssp             GGEEEEEEETT---------------------------------------------------------------------
T ss_pred             HHeEEeccCCC---------------------------------------------------------------------
Confidence            99999652110                                                                     


Q ss_pred             CCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCC
Q 045988          259 NGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~  338 (530)
                                                               .....+||+|||++..........+||+.|+|||++.+.
T Consensus       172 -----------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~  210 (373)
T 1q8y_A          172 -----------------------------------------ENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGA  210 (373)
T ss_dssp             -----------------------------------------TTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTC
T ss_pred             -----------------------------------------cCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCC
Confidence                                                     004579999999998777667778899999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccC
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (530)
                      .++.++|||||||++|+|++|.+||.+............+..+...+|..|..++..+.+...+|...+.+..+.....+
T Consensus       211 ~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (373)
T 1q8y_A          211 PWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFW  290 (373)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBC
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhccccccccc
Confidence            99999999999999999999999998877766667788999999999999999998888888889888888888888888


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      +........+.++...+.++.+||.+||++||.+|||+.|+|+||||+....
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  342 (373)
T 1q8y_A          291 PLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLG  342 (373)
T ss_dssp             CHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTT
T ss_pred             chhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhcccC
Confidence            8888888888999999999999999999999999999999999999997643

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.2e-55  Score=438.92  Aligned_cols=254  Identities=20%  Similarity=0.296  Sum_probs=196.3

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC-
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP-  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~-  118 (530)
                      ++|++++.||+|+||+||+|+++.+|+.||||+++...  ...+.+.+|+++|++|      +|||||+++++|..... 
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l------~HpnIV~~~~~~~~~~~~   78 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL------EHPGIVRYFNAWLEKNTT   78 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEEEEC--
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEEecCcc
Confidence            46999999999999999999999999999999886543  3346788999999999      78999999999986431 


Q ss_pred             -------CCcEEEEEEecc-CcCHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          119 -------NGQHVCMVFEYL-GENLLTLIKYADY-RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       119 -------~~~~~~lVmE~~-~~~L~~~i~~~~~-~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                             ...++||||||| +++|.+++..... .......++.|+.||+.||+|||++ |||||||||+||||+.    
T Consensus        79 ~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~-~IiHRDlKp~NILl~~----  153 (299)
T 4g31_A           79 EKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK-GLMHRDLKPSNIFFTM----  153 (299)
T ss_dssp             --------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT----
T ss_pred             ccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC-cCccccCcHHHeEECC----
Confidence                   234689999999 8999999975432 2255677899999999999999997 9999999999999955    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (299)
T 4g31_A          154 --------------------------------------------------------------------------------  153 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---------------cCCCCCCCCccCChh
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---------------FTNDIQTRQYRCPEV  334 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---------------~~~~~gt~~y~aPE~  334 (530)
                                                      ++.+||+|||+|+.....               .+..+||+.|||||+
T Consensus       154 --------------------------------~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~  201 (299)
T 4g31_A          154 --------------------------------DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQ  201 (299)
T ss_dssp             --------------------------------TCCEEECCCCCC--------------------------CCCTTSCHHH
T ss_pred             --------------------------------CCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHH
Confidence                                            467999999999754321               234589999999999


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhC-CCchhhhcCCCcccccccccCccccch
Q 045988          335 LLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG-MMPRKIAFGGRYSRDFFNRHGDLRHIR  413 (530)
Q Consensus       335 l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~  413 (530)
                      +.+..|+.++|||||||++|||++   ||.+        ..+....+..+.. ..|.                       
T Consensus       202 ~~~~~y~~~~DiwSlGvilyell~---Pf~~--------~~~~~~~~~~~~~~~~p~-----------------------  247 (299)
T 4g31_A          202 IHGNSYSHKVDIFSLGLILFELLY---PFST--------QMERVRTLTDVRNLKFPP-----------------------  247 (299)
T ss_dssp             HTTCCCCTHHHHHHHHHHHHHHHS---CCSS--------HHHHHHHHHHHHTTCCCH-----------------------
T ss_pred             HcCCCCCCHHHHHHHHHHHHHHcc---CCCC--------ccHHHHHHHHHhcCCCCC-----------------------
Confidence            999999999999999999999996   7742        2233333332221 1111                       


Q ss_pred             hcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                                      .....++.+.+||.+||+.||.+|||+.|+|+||||+.-
T Consensus       248 ----------------~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  286 (299)
T 4g31_A          248 ----------------LFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDL  286 (299)
T ss_dssp             ----------------HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGCCC
T ss_pred             ----------------CCcccCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCCC
Confidence                            011234667899999999999999999999999999854

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=2.8e-54  Score=464.21  Aligned_cols=263  Identities=22%  Similarity=0.356  Sum_probs=215.6

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      ....+..++|+++++||+|+||+||+|+++.+|+.||||++.+..    .......+|..++..+.+.   +|||||+++
T Consensus       182 ~~~~~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~---~HP~IV~l~  258 (689)
T 3v5w_A          182 LNIHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG---DCPFIVCMS  258 (689)
T ss_dssp             TTCCCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSS---CCTTBCCEE
T ss_pred             cCCCCchHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhC---CCCCEeEEE
Confidence            344455678999999999999999999999999999999987542    2234455666666655433   799999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ++|.    +...+||||||| ||+|..++...  +.+++..++.|+.||+.||+|||++ |||||||||+||||+.    
T Consensus       259 ~~f~----~~~~lylVmEy~~GGdL~~~l~~~--~~l~E~~a~~y~~qIl~aL~yLH~~-gIiHRDLKPeNILld~----  327 (689)
T 3v5w_A          259 YAFH----TPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNR-FVVYRDLKPANILLDE----  327 (689)
T ss_dssp             EEEE----CSSEEEEEECCCCSCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCSGGGEEECT----
T ss_pred             EEEE----ECCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCchHHeEEeC----
Confidence            9999    558999999999 99999999754  4599999999999999999999997 9999999999999965    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       328 --------------------------------------------------------------------------------  327 (689)
T 3v5w_A          328 --------------------------------------------------------------------------------  327 (689)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcC-CCCCCcchhH
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLG-SKYSTPADLW  347 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~-~~~~~~~DiW  347 (530)
                                                      ++.+||+|||+|+.... ...+.+||+.|||||++.+ ..|+.++|||
T Consensus       328 --------------------------------~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiW  375 (689)
T 3v5w_A          328 --------------------------------HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWF  375 (689)
T ss_dssp             --------------------------------TSCEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHH
T ss_pred             --------------------------------CCCEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHH
Confidence                                            56799999999976543 3456799999999999974 5799999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||+||||++|.+||.+.+..    +  ... +.                                      ..+....
T Consensus       376 SLGvilYEmLtG~~PF~~~~~~----~--~~~-i~--------------------------------------~~i~~~~  410 (689)
T 3v5w_A          376 SLGCMLFKLLRGHSPFRQHKTK----D--KHE-ID--------------------------------------RMTLTMA  410 (689)
T ss_dssp             HHHHHHHHHHHSSCTTCGGGCC----C--HHH-HH--------------------------------------HHHHHCC
T ss_pred             HHHHHHHHHHhCCCCCCCCChH----H--HHH-HH--------------------------------------HhhcCCC
Confidence            9999999999999999653311    1  111 11                                      1122233


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      +.++..+++++++||.+||+.||.+|++     ++||++||||+.-
T Consensus       411 ~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~i  456 (689)
T 3v5w_A          411 VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSL  456 (689)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTC
T ss_pred             CCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCccccCC
Confidence            4456677899999999999999999998     8999999999863

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=4.5e-54  Score=464.40  Aligned_cols=260  Identities=25%  Similarity=0.383  Sum_probs=215.2

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ++|++++.||+|+||+||+|+++.+|+.||||++.... ...+.+.+|+++|+.|      +|||||+++++|.    +.
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l------~hpnIv~l~~~~~----~~  226 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL------RHPTLVNLHDAFE----DD  226 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHT------CCTTBCCEEEEEE----CS
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhC------CCCCCCeEEEEEE----EC
Confidence            68999999999999999999999999999999887643 3356788999999999      7899999999999    55


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+||||||| ||+|.+++... ...+++.+++.|++||+.||+|||++ ||+||||||+|||++...            
T Consensus       227 ~~~~iv~E~~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH~~-~iiHRDlKp~Nill~~~~------------  292 (573)
T 3uto_A          227 NEMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHEN-NYVHLDLKPENIMFTTKR------------  292 (573)
T ss_dssp             SEEEEEEECCCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSSS------------
T ss_pred             CEEEEEEeecCCCcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCChhhccccCCC------------
Confidence            8999999999 89999988532 23599999999999999999999997 999999999999995410            


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       293 --------------------------------------------------------------------------------  292 (573)
T 3uto_A          293 --------------------------------------------------------------------------------  292 (573)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                            .+.+||+|||+|+....  .....+||+.|||||++.+..|+.++|||||||+||+|+
T Consensus       293 ----------------------~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml  350 (573)
T 3uto_A          293 ----------------------SNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILL  350 (573)
T ss_dssp             ----------------------CCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEeeccceeEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence                                  35699999999976543  234568999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|.+||.+.+      ....+..+.......+.                                      .....++++
T Consensus       351 ~G~~Pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------------~~~~~~s~~  386 (573)
T 3uto_A          351 SGLSPFGGEN------DDETLRNVKSCDWNMDD--------------------------------------SAFSGISED  386 (573)
T ss_dssp             HSCCSSCCSS------HHHHHHHHHTTCCCCCS--------------------------------------GGGTTSCHH
T ss_pred             HCCCCCCCcC------HHHHHHHHHhCCCCCCc--------------------------------------ccccCCCHH
Confidence            9999997543      22333332211111111                                      111345788


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      +++||.+||++||.+|||+.|+|+||||+.....
T Consensus       387 ~~dli~~~L~~dp~~R~t~~e~l~Hpw~~~~~~~  420 (573)
T 3uto_A          387 GKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAP  420 (573)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHHSTTTSCCCCT
T ss_pred             HHHHHHHHccCChhHCcCHHHHhcCcCcCCCCCC
Confidence            9999999999999999999999999999976543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2.8e-53  Score=421.32  Aligned_cols=253  Identities=22%  Similarity=0.332  Sum_probs=204.5

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      .++.++|.+.++||+|+||+||+|++.     .++..||||+++... ...+.+.+|+++|++|      +|||||++++
T Consensus         9 ~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l------~HpnIV~l~g   82 (299)
T 4asz_A            9 HIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL------QHEHIVKFYG   82 (299)
T ss_dssp             BCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTC------CCTTBCCEEE
T ss_pred             ccCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhC------CCCCCccEEE
Confidence            455678999999999999999999865     368899999987643 3356788999999999      7899999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhc-----------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD-----------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPE  179 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~-----------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~  179 (530)
                      ++.    +...+||||||| +|+|.+++....           ...+++..+..|+.||+.||+|||++ +||||||||+
T Consensus        83 ~~~----~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~-~iiHRDlKp~  157 (299)
T 4asz_A           83 VCV----EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ-HFVHRDLATR  157 (299)
T ss_dssp             EEC----SSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGG
T ss_pred             EEe----eCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCccCHh
Confidence            998    457899999999 999999997532           23599999999999999999999997 9999999999


Q ss_pred             cEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCC
Q 045988          180 NVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPN  259 (530)
Q Consensus       180 NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (530)
                      ||||+.                                                                          
T Consensus       158 NILl~~--------------------------------------------------------------------------  163 (299)
T 4asz_A          158 NCLVGE--------------------------------------------------------------------------  163 (299)
T ss_dssp             GEEECG--------------------------------------------------------------------------
T ss_pred             hEEECC--------------------------------------------------------------------------
Confidence            999965                                                                          


Q ss_pred             CCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChh
Q 045988          260 GDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEV  334 (530)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~  334 (530)
                                                                ++.+||+|||+|+.....     ....+||+.|||||+
T Consensus       164 ------------------------------------------~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~  201 (299)
T 4asz_A          164 ------------------------------------------NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPES  201 (299)
T ss_dssp             ------------------------------------------GGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHH
T ss_pred             ------------------------------------------CCcEEECCcccceecCCCCceeecCceecChhhcCHHH
Confidence                                                      567999999999754322     233468999999999


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccch
Q 045988          335 LLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR  413 (530)
Q Consensus       335 l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  413 (530)
                      +.+..|+.++|||||||+||||+| |++||.+.+      ..+.+..+..  |.                          
T Consensus       202 ~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~------~~~~~~~i~~--~~--------------------------  247 (299)
T 4asz_A          202 IMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS------NNEVIECITQ--GR--------------------------  247 (299)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHHHHH--TC--------------------------
T ss_pred             HcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--CC--------------------------
Confidence            999999999999999999999998 899996543      1222222211  10                          


Q ss_pred             hcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                                   ....+..+++++.+||.+||+.||.+|||+.|++  +|++
T Consensus       248 -------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~--~~L~  285 (299)
T 4asz_A          248 -------------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIH--TLLQ  285 (299)
T ss_dssp             -------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH--HHHH
T ss_pred             -------------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHH--HHHH
Confidence                         1123456678999999999999999999999994  5665

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=1.4e-52  Score=443.31  Aligned_cols=315  Identities=27%  Similarity=0.423  Sum_probs=232.1

Q ss_pred             cCCCCCCCCCccccccCcEe--eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHH
Q 045988           20 EGTEDYRRGGYHAVRMGDTF--KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQ   94 (530)
Q Consensus        20 e~~~~~~~~~~~~~~~g~~~--~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~   94 (530)
                      +....+..++|+++.+|+..  ..++|+++++||+|+||+||+|++..+++.||||++...   ......+.+|+.+|+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~  117 (464)
T 3ttj_A           38 NMSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKC  117 (464)
T ss_dssp             --------CCEEEEEC--CEEEEETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccceeeecCCcceeecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHh
Confidence            34455667889999999833  258999999999999999999999999999999998753   2335667899999999


Q ss_pred             hhcCCCCCCcceeEecceeeecC--CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCce
Q 045988           95 IAEGDPDDKKCVVKLLDHFKHSG--PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSII  172 (530)
Q Consensus        95 l~~~~~~~h~~Iv~~~~~~~~~~--~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIv  172 (530)
                      +      .|||||+++++|....  .....+||||||++++|...+.    ..+++..++.++.||+.||+|||++ ||+
T Consensus       118 l------~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~l~~~~~----~~l~~~~~~~~~~qil~aL~~lH~~-~ii  186 (464)
T 3ttj_A          118 V------NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA-GII  186 (464)
T ss_dssp             C------CCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             C------CCCCCCcEEEEEccCCccccCCeEEEEEeCCCCCHHHHHh----hcCCHHHHHHHHHHHHHHHHHHHHC-Ccc
Confidence            9      7889999999997543  2336789999999888888774    2389999999999999999999997 999


Q ss_pred             eccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCC
Q 045988          173 HTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHT  252 (530)
Q Consensus       173 HrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (530)
                      ||||||+||||+.                                                                   
T Consensus       187 HrDlkp~NIll~~-------------------------------------------------------------------  199 (464)
T 3ttj_A          187 HRDLKPSNIVVKS-------------------------------------------------------------------  199 (464)
T ss_dssp             CCCCCGGGEEECT-------------------------------------------------------------------
T ss_pred             cCCCChHhEEEeC-------------------------------------------------------------------
Confidence            9999999999954                                                                   


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCcc
Q 045988          253 SVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYR  330 (530)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~  330 (530)
                                                                       ++.+||+|||+|......  .+..+||++|+
T Consensus       200 -------------------------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~  230 (464)
T 3ttj_A          200 -------------------------------------------------DCTLKILDFGLARTAGTSFMMTPYVVTRYYR  230 (464)
T ss_dssp             -------------------------------------------------TSCEEECCCCCC-----CCCC----CCCTTC
T ss_pred             -------------------------------------------------CCCEEEEEEEeeeecCCCcccCCCccccccc
Confidence                                                             467999999999765432  45678999999


Q ss_pred             CChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc-cccccccCcc
Q 045988          331 CPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS-RDFFNRHGDL  409 (530)
Q Consensus       331 aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~~~~~  409 (530)
                      |||++.+..|+.++|||||||++|+|++|++||.+.+      ..+++..|+..+|.++..++...... ..+.......
T Consensus       231 aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~------~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~  304 (464)
T 3ttj_A          231 APEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD------YIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY  304 (464)
T ss_dssp             CHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCC
T ss_pred             CHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhccccc
Confidence            9999999999999999999999999999999997654      67899999999999887765443211 1111111110


Q ss_pred             ccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          410 RHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ........++. .............++++.+||.+||++||.+|||++|+|+||||+..
T Consensus       305 ~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~~  362 (464)
T 3ttj_A          305 AGLTFPKLFPD-SLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVW  362 (464)
T ss_dssp             CCCCHHHHSCG-GGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGG
T ss_pred             CCCChHHhCcc-cccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChhhhhc
Confidence            00000000000 00000000011236789999999999999999999999999999864

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=1.1e-51  Score=432.54  Aligned_cols=307  Identities=36%  Similarity=0.600  Sum_probs=250.7

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      .++.+ .++|+++++||+|+||+||+|.+..+++.||||+++........+.+|+++++.+.+.....|+||++++++|.
T Consensus        91 ~~~~~-~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~  169 (429)
T 3kvw_A           91 PHDHV-AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFT  169 (429)
T ss_dssp             TTCEE-TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEE
T ss_pred             CCCcc-cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecc
Confidence            45555 78999999999999999999999999999999999887666678889999999999988889999999999998


Q ss_pred             ecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                      .    ..++||||||++++|.+++.......+++..++.|+.||+.||+|||++ |||||||||+||||+...       
T Consensus       170 ~----~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlKp~NILl~~~~-------  237 (429)
T 3kvw_A          170 F----RNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN-RIIHCDLKPENILLKQQG-------  237 (429)
T ss_dssp             E----TTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH-TEECSCCSGGGEEESSTT-------
T ss_pred             c----CCeEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEEccCC-------
Confidence            4    4789999999999999999877666799999999999999999999998 999999999999995410       


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       238 --------------------------------------------------------------------------------  237 (429)
T 3kvw_A          238 --------------------------------------------------------------------------------  237 (429)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                                 ...+||+|||+|+.........+||+.|+|||++.+..|+.++|||||||++|
T Consensus       238 ---------------------------~~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  290 (429)
T 3kvw_A          238 ---------------------------RSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILA  290 (429)
T ss_dssp             ---------------------------SCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHH
T ss_pred             ---------------------------CcceEEeecccceecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHH
Confidence                                       12389999999987777777789999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchh-------------------c
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR-------------------L  415 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~  415 (530)
                      +|++|.+||.+..      ..+.+..++..+|.++..++........++...+..+....                   .
T Consensus       291 elltG~~pf~~~~------~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (429)
T 3kvw_A          291 ELLTGYPLLPGED------EGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKL  364 (429)
T ss_dssp             HHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCE
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccccccccccccchhhc
Confidence            9999999997654      67889999999999998887665544444443322111000                   0


Q ss_pred             ccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ...+......  ..+....++.+.+||.+||++||.+|||+.|+|+||||+...
T Consensus       365 ~~~~~~~~~~--~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~~  416 (429)
T 3kvw_A          365 RGPPESREWG--NALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRL  416 (429)
T ss_dssp             ECSTTCSCHH--HHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC---
T ss_pred             cCCccchhhH--hhccccchHHHHHHHHHHCCCChhhCCCHHHHhCChhhccCC
Confidence            0000000000  012233467899999999999999999999999999999753

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.7e-52  Score=421.40  Aligned_cols=251  Identities=22%  Similarity=0.332  Sum_probs=200.3

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      .+...+|.+.++||+|+||+||+|+..     .+++.||||+++... ...+.+.+|+++|++|      +|||||++++
T Consensus        37 ~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l------~HpnIV~l~g  110 (329)
T 4aoj_A           37 HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTML------QHQHIVRFFG  110 (329)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTC------CCTTBCCEEE
T ss_pred             ccCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhC------CCCCCCcEEE
Confidence            344578999999999999999999864     468999999987643 3456789999999999      7899999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhc-------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD-------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLK  177 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~-------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIK  177 (530)
                      ++.    +...+||||||| +|+|.+++....             ...+++.++..|+.||+.||+|||++ +|||||||
T Consensus       111 ~~~----~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~-~iiHRDLK  185 (329)
T 4aoj_A          111 VCT----EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL-HFVHRDLA  185 (329)
T ss_dssp             EEC----SSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCC
T ss_pred             EEE----ECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC-Ceeccccc
Confidence            998    457899999999 999999997532             23489999999999999999999997 99999999


Q ss_pred             CCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCC
Q 045988          178 PENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAE  257 (530)
Q Consensus       178 p~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (530)
                      |+||||+.                                                                        
T Consensus       186 p~NILl~~------------------------------------------------------------------------  193 (329)
T 4aoj_A          186 TRNCLVGQ------------------------------------------------------------------------  193 (329)
T ss_dssp             GGGEEEET------------------------------------------------------------------------
T ss_pred             HhhEEECC------------------------------------------------------------------------
Confidence            99999965                                                                        


Q ss_pred             CCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCC
Q 045988          258 PNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCP  332 (530)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aP  332 (530)
                                                                  +..+||+|||+|+.....     .+..+||+.||||
T Consensus       194 --------------------------------------------~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAP  229 (329)
T 4aoj_A          194 --------------------------------------------GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPP  229 (329)
T ss_dssp             --------------------------------------------TTEEEECCCC----------------CCCCGGGCCH
T ss_pred             --------------------------------------------CCcEEEcccccceeccCCCcceecCcccccccccCh
Confidence                                                        568999999999754321     2456799999999


Q ss_pred             hhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcccc
Q 045988          333 EVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH  411 (530)
Q Consensus       333 E~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  411 (530)
                      |++.+..|+.++|||||||+||||+| |+.||.+.+      ..+.+..+..  |.                        
T Consensus       230 E~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~------~~~~~~~i~~--g~------------------------  277 (329)
T 4aoj_A          230 ESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS------NTEAIDCITQ--GR------------------------  277 (329)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC------HHHHHHHHHH--TC------------------------
T ss_pred             hhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--CC------------------------
Confidence            99999999999999999999999999 899996543      2222222211  10                        


Q ss_pred             chhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                     ....+..+++++.+||.+||+.||++|||+.||+++
T Consensus       278 ---------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~  313 (329)
T 4aoj_A          278 ---------------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR  313 (329)
T ss_dssp             ---------------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHH
T ss_pred             ---------------CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence                           123445667899999999999999999999999874

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-52  Score=415.82  Aligned_cols=249  Identities=22%  Similarity=0.362  Sum_probs=195.4

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +..++|++.++||+|+||+||+|+...   .||||+++...   ...+.+.+|+.+|++|      +|||||++++++..
T Consensus        33 i~~~~l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~f~~E~~il~~l------~HpNIV~l~g~~~~  103 (307)
T 3omv_A           33 IEASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKT------RHVNILLFMGYMTK  103 (307)
T ss_dssp             CCTTSCCEEEECCCCSSSEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEECS
T ss_pred             EcHHHeEEeeEEeeCCCcEEEEEEECC---cEEEEEEEecCCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEEC
Confidence            456789999999999999999997543   59999987532   3356788999999999      78999999998752


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                           ..+||||||| +|+|.+++... ...+++..+..|+.||+.||+|||++ +||||||||+||||+.         
T Consensus       104 -----~~~~iVmEy~~gGsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH~~-~IiHRDlKp~NILl~~---------  167 (307)
T 3omv_A          104 -----DNLAIVTQWCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLHAK-NIIHRDMKSNNIFLHE---------  167 (307)
T ss_dssp             -----SSCEEEEECCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHT-TCBCSCCCSSSEEEET---------
T ss_pred             -----CeEEEEEEcCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CccCCccCHHHEEECC---------
Confidence                 3589999999 89999999643 34599999999999999999999997 9999999999999965         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (307)
T 3omv_A          168 --------------------------------------------------------------------------------  167 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcC---CCCCCcchh
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLG---SKYSTPADL  346 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~---~~~~~~~Di  346 (530)
                                                 ++.+||+|||+|+....     .....+||+.|||||++.+   .+|+.++||
T Consensus       168 ---------------------------~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDV  220 (307)
T 3omv_A          168 ---------------------------GLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDV  220 (307)
T ss_dssp             ---------------------------TEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHH
T ss_pred             ---------------------------CCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHh
Confidence                                       56799999999975432     2345689999999999974   358999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||+||||+||+.||.+.+      ....+..++..--..|.                                    
T Consensus       221 wS~Gvvl~Elltg~~Pf~~~~------~~~~~~~~~~~~~~~p~------------------------------------  258 (307)
T 3omv_A          221 YSYGIVLYELMTGELPYSHIN------NRDQIIFMVGRGYASPD------------------------------------  258 (307)
T ss_dssp             HHHHHHHHHHHHSSCTTTTCC------CHHHHHHHHHTTCCCCC------------------------------------
T ss_pred             HhHHHHHHHHHHCCCCCCCCC------hHHHHHHHHhcCCCCCC------------------------------------
Confidence            999999999999999996543      22233222211000000                                    


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ....+..+++++.+||.+||+.||.+|||+.|+++
T Consensus       259 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~  293 (307)
T 3omv_A          259 LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILS  293 (307)
T ss_dssp             STTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHH
T ss_pred             cccccccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            01233456788999999999999999999998753

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=3.3e-52  Score=415.40  Aligned_cols=250  Identities=19%  Similarity=0.303  Sum_probs=203.6

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +....+++.++||+|+||+||+|+..     .+++.||||+++...  ...+.+.+|+.+|++|      +|||||++++
T Consensus        23 i~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l------~HpNIV~l~g   96 (308)
T 4gt4_A           23 ISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARL------QHPNVVCLLG   96 (308)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHC------CCTTBCCEEE
T ss_pred             CCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhC------CCCCCCCcce
Confidence            34568999999999999999999853     467899999987543  3457789999999999      7899999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD--------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDL  176 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~--------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDI  176 (530)
                      ++.    ....+||||||| +|+|.+++....              ...+++..+..|+.||+.||+|||++ +||||||
T Consensus        97 ~~~----~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~-~iiHRDL  171 (308)
T 4gt4_A           97 VVT----KDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH-HVVHKDL  171 (308)
T ss_dssp             EEC----SSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCC
T ss_pred             EEE----ECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC-CCCCCCc
Confidence            998    446799999999 999999996432              23489999999999999999999997 9999999


Q ss_pred             CCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCC
Q 045988          177 KPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDA  256 (530)
Q Consensus       177 Kp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (530)
                      ||+||||+.                                                                       
T Consensus       172 K~~NILl~~-----------------------------------------------------------------------  180 (308)
T 4gt4_A          172 ATRNVLVYD-----------------------------------------------------------------------  180 (308)
T ss_dssp             SGGGEEECG-----------------------------------------------------------------------
T ss_pred             cccceEECC-----------------------------------------------------------------------
Confidence            999999965                                                                       


Q ss_pred             CCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccC
Q 045988          257 EPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRC  331 (530)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~a  331 (530)
                                                                   ++.+||+|||+|+....     ..+..+||+.|||
T Consensus       181 ---------------------------------------------~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymA  215 (308)
T 4gt4_A          181 ---------------------------------------------KLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMA  215 (308)
T ss_dssp             ---------------------------------------------GGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCC
T ss_pred             ---------------------------------------------CCCEEECCcccceeccCCCceeEecccccCCcccC
Confidence                                                         56799999999975432     2345689999999


Q ss_pred             ChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccc
Q 045988          332 PEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR  410 (530)
Q Consensus       332 PE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  410 (530)
                      ||++.+..|+.++|||||||+||||+| |..||.+.+      ..+.+..+..  |.                       
T Consensus       216 PE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~------~~~~~~~i~~--~~-----------------------  264 (308)
T 4gt4_A          216 PEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS------NQDVVEMIRN--RQ-----------------------  264 (308)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC------HHHHHHHHHT--TC-----------------------
T ss_pred             HHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CC-----------------------
Confidence            999999999999999999999999998 899997543      2222221110  00                       


Q ss_pred             cchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          411 HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                      ....+..+++.+.+||.+||+.||.+|||+.||+++
T Consensus       265 ----------------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~  300 (308)
T 4gt4_A          265 ----------------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSR  300 (308)
T ss_dssp             ----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                            112345667889999999999999999999999875

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=7.2e-51  Score=420.07  Aligned_cols=320  Identities=32%  Similarity=0.554  Sum_probs=253.1

Q ss_pred             CCCCCCc-cccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCC
Q 045988           24 DYRRGGY-HAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        24 ~~~~~~~-~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      .|....| +++..|+.+ .++|++.++||+|+||+||+|++..+++.||||+++........+.+|+.+++.+.+.+...
T Consensus        36 ~~~~~~~~~~~~~~~~~-~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~  114 (382)
T 2vx3_A           36 GYDDDNYDYIVKNGEKW-MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEM  114 (382)
T ss_dssp             GTBCTTSCBCCCTTCEE-TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGG
T ss_pred             CcCCCCCcEEeecCCEe-eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhccccc
Confidence            3444444 578999999 78999999999999999999999999999999999876666677888999999998665556


Q ss_pred             CcceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCceeccCCCCcE
Q 045988          103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR-ELSIIHTDLKPENV  181 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~-~~gIvHrDIKp~NI  181 (530)
                      |++|++++++|..    ...+||||||++++|.+++.......+++..++.++.||+.||.|||+ +.|||||||||+||
T Consensus       115 ~~~iv~~~~~~~~----~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NI  190 (382)
T 2vx3_A          115 KYYIVHLKRHFMF----RNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENI  190 (382)
T ss_dssp             GGGBCCEEEEEEE----TTEEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGE
T ss_pred             ceeEEEeeeeecc----CCceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccE
Confidence            7789999999984    479999999998899999987665679999999999999999999994 24999999999999


Q ss_pred             EEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 045988          182 LLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGD  261 (530)
Q Consensus       182 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (530)
                      ||....                                                                          
T Consensus       191 ll~~~~--------------------------------------------------------------------------  196 (382)
T 2vx3_A          191 LLCNPK--------------------------------------------------------------------------  196 (382)
T ss_dssp             EESSTT--------------------------------------------------------------------------
T ss_pred             EEecCC--------------------------------------------------------------------------
Confidence            994310                                                                          


Q ss_pred             CcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCC
Q 045988          262 SVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                              ...+||+|||+++.........+||+.|+|||++.+..|+
T Consensus       197 ----------------------------------------~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~  236 (382)
T 2vx3_A          197 ----------------------------------------RSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYD  236 (382)
T ss_dssp             ----------------------------------------SCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCC
T ss_pred             ----------------------------------------CCcEEEEeccCceecccccccccCCccccChHHHcCCCCC
Confidence                                                    3569999999998876667778999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccc---------
Q 045988          342 TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI---------  412 (530)
Q Consensus       342 ~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---------  412 (530)
                      .++|||||||++|+|++|.+||.+.+      ..+.+..+...+|.+|..++........+|.........         
T Consensus       237 ~~~DiwSlG~il~elltg~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (382)
T 2vx3_A          237 LAIDMWSLGCILVEMHTGEPLFSGAN------EVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKR  310 (382)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTCC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhcccccccccccccccc
Confidence            99999999999999999999997544      677889999999999888765544433444332211000         


Q ss_pred             --hhcccCCchhhhh-----------hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          413 --RRLRFWPLNKVLI-----------EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       413 --~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                        .......+...+.           ..........+++.+||.+||++||.+|||+.|+|+||||+..
T Consensus       311 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~  379 (382)
T 2vx3_A          311 EYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKT  379 (382)
T ss_dssp             CSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC-
T ss_pred             ccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhcCcccccC
Confidence              0000000000000           0001122334689999999999999999999999999999864

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.4e-50  Score=414.29  Aligned_cols=330  Identities=30%  Similarity=0.488  Sum_probs=242.8

Q ss_pred             ccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           32 AVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        32 ~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      ....|+.+ .++|+++++||+|+||+||+|++..+++.||||+++..........+|+.+++.+.+.. ..||||+++++
T Consensus        26 ~~~~g~~~-~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~-~~h~~iv~~~~  103 (360)
T 3llt_A           26 SWKKGMLL-NNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDD-INNNNIVKYHG  103 (360)
T ss_dssp             CCCTTCEE-TTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCS-TTGGGBCCEEE
T ss_pred             eeecceEe-cCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccC-CCCCCeecccc
Confidence            34667777 78999999999999999999999999999999999876666677888999999997533 36999999999


Q ss_pred             eeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +|..    ....||||||++++|.+++.......+++..++.++.||+.||+|||++ |||||||||+|||++.......
T Consensus       104 ~~~~----~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~~~~~~~  178 (360)
T 3llt_A          104 KFMY----YDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM-SLTHTDLKPENILLDDPYFEKS  178 (360)
T ss_dssp             EEEE----TTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCTTCCEE
T ss_pred             eeeE----CCeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCcccEEEcccccccc
Confidence            9984    4789999999999999999876666799999999999999999999997 9999999999999954110000


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                  .                                ...
T Consensus       179 --------------------------------------------~--------------------------------~~~  182 (360)
T 3llt_A          179 --------------------------------------------L--------------------------------ITV  182 (360)
T ss_dssp             --------------------------------------------E--------------------------------EEE
T ss_pred             --------------------------------------------c--------------------------------cch
Confidence                                                        0                                000


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                      .......               ...........+||+|||++..........+||+.|+|||++.+..|+.++|||||||
T Consensus       183 ~~~~~~~---------------~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  247 (360)
T 3llt_A          183 RRVTDGK---------------KIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGC  247 (360)
T ss_dssp             ECTTTCC---------------EEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHH
T ss_pred             hcccccc---------------cccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHH
Confidence            0000000               0000001146799999999987766667788999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--cccccccCccccchhcccCCchhh---hhh
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFNRHGDLRHIRRLRFWPLNKV---LIE  426 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~  426 (530)
                      ++|+|++|.+||.+..      ..+.+..+....+..|..+.......  ..++........+.. ........   ...
T Consensus       248 il~ell~g~~pf~~~~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~  320 (360)
T 3llt_A          248 VLAELYTGSLLFRTHE------HMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPE-NASSINSIKHVKKC  320 (360)
T ss_dssp             HHHHHHHSSCSCCCSS------HHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTT-TCSCHHHHHHHHTC
T ss_pred             HHHHHHHCCCCCCCCc------HHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcc-cccchhhhhhhhhc
Confidence            9999999999997543      67788889999998887665322211  111111000000000 00000000   000


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      ...+....++.+.+||.+||++||.+|||+.|+|+||||+
T Consensus       321 ~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          321 LPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             CCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             ccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence            0011112347788999999999999999999999999996

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.9e-50  Score=411.42  Aligned_cols=335  Identities=30%  Similarity=0.484  Sum_probs=256.5

Q ss_pred             CCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCC-eEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCc
Q 045988           26 RRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTS-HYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKK  104 (530)
Q Consensus        26 ~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~-~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~  104 (530)
                      ..+|++++.+|+.+ .++|++.+.||+|+||+||+|.+..++ +.||||+++......+.+.+|+.+++++.|.+...+.
T Consensus         4 ~~~~~~~~~~g~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~   82 (355)
T 2eu9_A            4 DKEGHLVCRIGDWL-QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKF   82 (355)
T ss_dssp             CTTSCBCCCTTCEE-TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCS
T ss_pred             ccCCCcccccCcee-cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCce
Confidence            35778899999999 789999999999999999999998876 7999999987666677888999999999988777788


Q ss_pred             ceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          105 CVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       105 ~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                      +++.+++++..    ..+.||||||++++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||+.
T Consensus        83 ~~~~~~~~~~~----~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~-~ivH~Dlkp~NIll~  157 (355)
T 2eu9_A           83 LCVLMSDWFNF----HGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN-QLTHTDLKPENILFV  157 (355)
T ss_dssp             CBCCEEEEEEE----TTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEES
T ss_pred             eEEEeeeeeee----CCeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEe
Confidence            89999999884    4689999999999999988766556699999999999999999999997 999999999999994


Q ss_pred             eccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 045988          185 SMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVE  264 (530)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (530)
                      .......                                                                         
T Consensus       158 ~~~~~~~-------------------------------------------------------------------------  164 (355)
T 2eu9_A          158 NSEFETL-------------------------------------------------------------------------  164 (355)
T ss_dssp             CCCEEEE-------------------------------------------------------------------------
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            4100000                                                                         


Q ss_pred             cccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcc
Q 045988          265 DQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPA  344 (530)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~  344 (530)
                             .......                 .........+||+|||++..........+||+.|+|||++.+..++.++
T Consensus       165 -------~~~~~~~-----------------~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  220 (355)
T 2eu9_A          165 -------YNEHKSC-----------------EEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPC  220 (355)
T ss_dssp             -------ECCC-CC-----------------CEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHH
T ss_pred             -------ccccccc-----------------cccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCcc
Confidence                   0000000                 0000115679999999998766666777899999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc--CCchh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF--WPLNK  422 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  422 (530)
                      |||||||++|+|++|..||....      ....+..+...++..|..++........++.....+........  .....
T Consensus       221 Di~slG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (355)
T 2eu9_A          221 DVWSIGCILFEYYRGFTLFQTHE------NREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCK  294 (355)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCC
T ss_pred             chHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCC
Confidence            99999999999999999997543      56778888999999998877554433322221111110000000  00000


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ............+.++.+||.+||++||.+|||+.|+|+||||+...
T Consensus       295 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~  341 (355)
T 2eu9_A          295 PLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLT  341 (355)
T ss_dssp             CGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGCC
T ss_pred             cccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChhhcCCC
Confidence            00111122334567899999999999999999999999999999653

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=2.1e-51  Score=416.80  Aligned_cols=253  Identities=25%  Similarity=0.360  Sum_probs=205.8

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCC-----CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQT-----SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~-----~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      |..++|++.++||+|+||+||+|.+..+     ++.||||+++...  ...+.+.+|+++|+++.     +|||||++++
T Consensus        61 i~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~-----hhpnIV~l~g  135 (353)
T 4ase_A           61 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVVNLLG  135 (353)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEE
T ss_pred             ecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcC-----CCCcEEEEEE
Confidence            4467999999999999999999987543     4789999987643  23456889999999995     4689999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDL  176 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDI  176 (530)
                      ++...   +..+||||||| +|+|.+++.....              ..+++..+..|+.||+.||+|||++ +||||||
T Consensus       136 ~~~~~---~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~-~iiHRDL  211 (353)
T 4ase_A          136 ACTKP---GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDL  211 (353)
T ss_dssp             EECCT---TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT-TCCCSCC
T ss_pred             EEEec---CCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC-CeecCcc
Confidence            98742   35789999999 9999999975432              3488999999999999999999997 9999999


Q ss_pred             CCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCC
Q 045988          177 KPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDA  256 (530)
Q Consensus       177 Kp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (530)
                      ||+|||++.                                                                       
T Consensus       212 K~~NILl~~-----------------------------------------------------------------------  220 (353)
T 4ase_A          212 AARNILLSE-----------------------------------------------------------------------  220 (353)
T ss_dssp             SGGGEEECG-----------------------------------------------------------------------
T ss_pred             CccceeeCC-----------------------------------------------------------------------
Confidence            999999965                                                                       


Q ss_pred             CCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccC
Q 045988          257 EPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRC  331 (530)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~a  331 (530)
                                                                   ++.+||+|||+|+.....     .+..+||+.|||
T Consensus       221 ---------------------------------------------~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymA  255 (353)
T 4ase_A          221 ---------------------------------------------KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA  255 (353)
T ss_dssp             ---------------------------------------------GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCC
T ss_pred             ---------------------------------------------CCCEEECcchhhhhcccCCCceeeccccccccccC
Confidence                                                         567999999999754322     234578999999


Q ss_pred             ChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccc
Q 045988          332 PEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR  410 (530)
Q Consensus       332 PE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  410 (530)
                      ||++.+..|+.++|||||||+||||+| |.+||.+.+.     . ..+..++.. |.                       
T Consensus       256 PE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~-----~-~~~~~~i~~-g~-----------------------  305 (353)
T 4ase_A          256 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-----D-EEFCRRLKE-GT-----------------------  305 (353)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-----S-HHHHHHHHH-TC-----------------------
T ss_pred             HHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH-----H-HHHHHHHHc-CC-----------------------
Confidence            999999999999999999999999998 9999975431     1 122111111 10                       


Q ss_pred             cchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          411 HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                      .+..+...++++.+||.+||+.||.+|||+.||++|
T Consensus       306 ----------------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~  341 (353)
T 4ase_A          306 ----------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  341 (353)
T ss_dssp             ----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------------CCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence                            123345567899999999999999999999999987

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=2.7e-50  Score=407.42  Aligned_cols=331  Identities=30%  Similarity=0.508  Sum_probs=254.7

Q ss_pred             CccccccCcEeeCCCEEEEEEeccccceEEEEEEe-CCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCccee
Q 045988           29 GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWD-TQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVV  107 (530)
Q Consensus        29 ~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~-~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv  107 (530)
                      +++++..|+.+ .++|++.+.||+|+||+||+|.+ ..+++.||||+++......+.+.+|+.+++.+.|.+...|++|+
T Consensus         2 ~~~~~~~g~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~   80 (339)
T 1z57_A            2 MHLICQSGDVL-SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCV   80 (339)
T ss_dssp             GGGTCSTTCEE-TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBC
T ss_pred             CceeeecCCCc-cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeE
Confidence            46788999999 78999999999999999999998 56899999999987666677889999999999998888899999


Q ss_pred             EecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          108 KLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       108 ~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      +++++|..    ..++|+||||++++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++...
T Consensus        81 ~~~~~~~~----~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~~~~  155 (339)
T 1z57_A           81 QMLEWFEH----HGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN-KLTHTDLKPENILFVQSD  155 (339)
T ss_dssp             CEEEEEEE----TTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESCCC
T ss_pred             eeeccccc----CCcEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC-CCcCCCCCHHHEEEeccc
Confidence            99999984    4699999999999999999876655699999999999999999999997 999999999999995411


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                      ....                                                                            
T Consensus       156 ~~~~----------------------------------------------------------------------------  159 (339)
T 1z57_A          156 YTEA----------------------------------------------------------------------------  159 (339)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                          .      +...           ...........++|+|||++..........+||+.|+|||++.+..++.++|||
T Consensus       160 ----~------~~~~-----------~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~  218 (339)
T 1z57_A          160 ----Y------NPKI-----------KRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVW  218 (339)
T ss_dssp             ----E------C---------------CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHH
T ss_pred             ----c------CCcc-----------ccccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhH
Confidence                0      0000           000000114579999999998766666777899999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc--CCchhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF--WPLNKVLI  425 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  425 (530)
                      ||||++|+|++|..||....      ..+.+..+...++..|..++........+......+........  ........
T Consensus       219 slG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (339)
T 1z57_A          219 SIGCILIEYYLGFTVFPTHD------SKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLK  292 (339)
T ss_dssp             HHHHHHHHHHHSSCSCCCSC------HHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGG
T ss_pred             HHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchh
Confidence            99999999999999997543      56778888999999998876554433222211111110000000  00000011


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .........++++.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       293 ~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~  335 (339)
T 1z57_A          293 EFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLL  335 (339)
T ss_dssp             GGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGG
T ss_pred             hhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHHHHH
Confidence            1122344567889999999999999999999999999999854

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=2.1e-50  Score=404.91  Aligned_cols=296  Identities=29%  Similarity=0.436  Sum_probs=224.8

Q ss_pred             CCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCC
Q 045988           26 RRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        26 ~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      +.+++++...++.+ .++|+++++||+|+||+||+|++. +++.||+|++.....   ....+.+|+.+++++      .
T Consensus         6 ~~~~~~~~~~~q~l-~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~   77 (311)
T 3niz_A            6 HHSSGRENLYFQGL-MEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKEL------H   77 (311)
T ss_dssp             ---------CEECS-SCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHC------C
T ss_pred             cccccccceeecch-HhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHc------C
Confidence            45567777888888 789999999999999999999985 589999998875432   246678999999999      7


Q ss_pred             CcceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEE
Q 045988          103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NIL  182 (530)
                      ||||+++++++.    ....+++||||+.++|.+++... ...+++..++.++.||+.||+|||++ ||+||||||+|||
T Consensus        78 hp~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~Dikp~NIl  151 (311)
T 3niz_A           78 HPNIVSLIDVIH----SERCLTLVFEFMEKDLKKVLDEN-KTGLQDSQIKIYLYQLLRGVAHCHQH-RILHRDLKPQNLL  151 (311)
T ss_dssp             CTTBCCEEEEEC----CSSCEEEEEECCSEEHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEE
T ss_pred             CCCEeeeeeEEc----cCCEEEEEEcCCCCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCchHhEE
Confidence            889999999998    45789999999988999988743 34599999999999999999999997 9999999999999


Q ss_pred             EeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 045988          183 LMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDS  262 (530)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (530)
                      ++.                                                                             
T Consensus       152 ~~~-----------------------------------------------------------------------------  154 (311)
T 3niz_A          152 INS-----------------------------------------------------------------------------  154 (311)
T ss_dssp             ECT-----------------------------------------------------------------------------
T ss_pred             ECC-----------------------------------------------------------------------------
Confidence            954                                                                             


Q ss_pred             cccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcC-C
Q 045988          263 VEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLG-S  338 (530)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~-~  338 (530)
                                                             ++.+||+|||++....   ......+||+.|+|||++.+ .
T Consensus       155 ---------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  195 (311)
T 3niz_A          155 ---------------------------------------DGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSK  195 (311)
T ss_dssp             ---------------------------------------TCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCC
T ss_pred             ---------------------------------------CCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCC
Confidence                                                   4579999999997643   23455688999999999987 4


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccC
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (530)
                      .|+.++|||||||++|+|++|.+||.+..      ..+.+..+...+|.++...+........+...          .+.
T Consensus       196 ~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  259 (311)
T 3niz_A          196 KYSTSVDIWSIGCIFAEMITGKPLFPGVT------DDDQLPKIFSILGTPNPREWPQVQELPLWKQR----------TFQ  259 (311)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSCCCSS------TTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSC----------CCC
T ss_pred             CCCchHHhHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHHCCCChHHhhhhhccchhhhc----------ccc
Confidence            58999999999999999999999997654      56678888888887765543222111100000          000


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ......  ........++++.+||.+||++||.+|||+.|+|+||||+.-.
T Consensus       260 ~~~~~~--~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  308 (311)
T 3niz_A          260 VFEKKP--WSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDLD  308 (311)
T ss_dssp             CCCCCC--HHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTSC
T ss_pred             cccCCc--HHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCcccccCC
Confidence            000000  0011234567899999999999999999999999999998643

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-50  Score=401.99  Aligned_cols=293  Identities=32%  Similarity=0.498  Sum_probs=226.7

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc------cchHHHHHHHHHHHHhhcCCCCCCccee
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ------HYTEAALDEIKILKQIAEGDPDDKKCVV  107 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv  107 (530)
                      .+|+.+ .++|++.++||+|+||+||+|++..+++.||||++....      .......+|+.+++++...   .||||+
T Consensus         2 p~g~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~h~niv   77 (308)
T 3g33_A            2 PLGSMA-TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAF---EHPNVV   77 (308)
T ss_dssp             ---------CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHH---CCTTBC
T ss_pred             CCCccc-ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhc---CCCCeE
Confidence            357777 789999999999999999999999999999999987432      2245677899998888532   489999


Q ss_pred             EecceeeecCC-CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          108 KLLDHFKHSGP-NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       108 ~~~~~~~~~~~-~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      ++++++..... ....+++||||++++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||++. 
T Consensus        78 ~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dlkp~Nil~~~-  155 (308)
T 3g33_A           78 RLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN-CIVHRDLKPENILVTS-  155 (308)
T ss_dssp             CEEEEEEECCSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCTTTEEECT-
T ss_pred             EeeeeeeccCCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEcC-
Confidence            99999986531 12368999999988999999876656699999999999999999999997 9999999999999954 


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (308)
T 3g33_A          156 --------------------------------------------------------------------------------  155 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcc
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPA  344 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~  344 (530)
                                                         ++.+||+|||++.....  .....+||+.|+|||++.+..|+.++
T Consensus       156 -----------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  200 (308)
T 3g33_A          156 -----------------------------------GGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPV  200 (308)
T ss_dssp             -----------------------------------TSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTH
T ss_pred             -----------------------------------CCCEEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchH
Confidence                                               45799999999975432  23456789999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc-cccccccCccccchhcccCCchhh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS-RDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      |||||||++|+|++|.+||.+.+      ..+.+..+...++.++...+...... ...|....         ..+    
T Consensus       201 DiwslG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----  261 (308)
T 3g33_A          201 DMWSVGCIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRG---------PRP----  261 (308)
T ss_dssp             HHHHHHHHHHHTTTSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCC---------CCC----
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChhhccchhhccccccCCCC---------CCc----
Confidence            99999999999999999997544      67788889999998877655322111 00010000         000    


Q ss_pred             hhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       424 ~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                         ........++.+.+||.+||++||.+|||+.|+|+||||+...
T Consensus       262 ---~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~~  304 (308)
T 3g33_A          262 ---VQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDE  304 (308)
T ss_dssp             ---HHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC----
T ss_pred             ---HHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcCccccCCC
Confidence               0012234678899999999999999999999999999998654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=4.2e-50  Score=405.60  Aligned_cols=253  Identities=27%  Similarity=0.441  Sum_probs=212.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.+.||+|+||.||+|++..+|+.||||++....   .....+.+|+++|+.+      .||||+++++++.   
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~l~~~~~---   84 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKIL------NHPNIVKLFEVIE---   84 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEE---
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEE---
Confidence            579999999999999999999999999999999987643   2345678999999999      7889999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ....+|+||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        85 -~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~NIll~~-----------  149 (328)
T 3fe3_A           85 -TEKTLYLIMEYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCHQK-RIVHRDLKAENLLLDA-----------  149 (328)
T ss_dssp             -CSSEEEEEECCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT-----------
T ss_pred             -ECCEEEEEEECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEeccCCCHHHEEEcC-----------
Confidence             457899999999 89999998754  4599999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (328)
T 3fe3_A          150 --------------------------------------------------------------------------------  149 (328)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCC-CcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYS-TPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~-~~~DiWSlG~il  353 (530)
                                               ++.+||+|||++....  ......+||+.|+|||++.+..+. .++|||||||++
T Consensus       150 -------------------------~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il  204 (328)
T 3fe3_A          150 -------------------------DMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVIL  204 (328)
T ss_dssp             -------------------------TSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHH
T ss_pred             -------------------------CCCEEEeeccCceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHH
Confidence                                     4679999999996533  334667899999999999988875 789999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||.+.+      .......                                          +....+.++..
T Consensus       205 ~ell~g~~pf~~~~------~~~~~~~------------------------------------------i~~~~~~~p~~  236 (328)
T 3fe3_A          205 YTLVSGSLPFDGQN------LKELRER------------------------------------------VLRGKYRIPFY  236 (328)
T ss_dssp             HHHHHSSCSSCCSS------HHHHHHH------------------------------------------HHHCCCCCCTT
T ss_pred             HHHHhCCCCCCCCC------HHHHHHH------------------------------------------HHhCCCCCCCC
Confidence            99999999996532      1111111                                          11122334445


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .++++.+||.+||.+||.+|||+.|+|+||||+....
T Consensus       237 ~s~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~~~  273 (328)
T 3fe3_A          237 MSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHE  273 (328)
T ss_dssp             SCHHHHHHHHHHCCSSTTTSCCHHHHTTCTTTTTTCT
T ss_pred             CCHHHHHHHHHHCCCChhHCcCHHHHhcCHhhcCCCc
Confidence            6788999999999999999999999999999987643

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.2e-50  Score=413.70  Aligned_cols=265  Identities=25%  Similarity=0.362  Sum_probs=209.3

Q ss_pred             CCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCC
Q 045988           28 GGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        28 ~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h  103 (530)
                      |...++.....+..++|+++++||+|+||+||+|+++.+++.||||++++.    ....+...+|..+|+.+.     +|
T Consensus         9 ~~~~~~~~~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~-----~h   83 (353)
T 3txo_A            9 GNGIGVNSSNRLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLAR-----NH   83 (353)
T ss_dssp             --------------CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTT-----TC
T ss_pred             CCCCCCCCcCCCchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhcc-----CC
Confidence            455566677777789999999999999999999999999999999998764    233556788999998874     68


Q ss_pred             cceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEE
Q 045988          104 KCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NIL  182 (530)
                      |||++++++|.    +...+||||||| +++|..++...  ..+++..++.++.||+.||+|||++ |||||||||+|||
T Consensus        84 p~Iv~l~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NIL  156 (353)
T 3txo_A           84 PFLTQLFCCFQ----TPDRLFFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEIISALMFLHDK-GIIYRDLKLDNVL  156 (353)
T ss_dssp             TTBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEE
T ss_pred             CceeeEEEEEE----eCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHEE
Confidence            99999999998    457899999999 88999998754  4499999999999999999999997 9999999999999


Q ss_pred             EeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 045988          183 LMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDS  262 (530)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (530)
                      |+.                                                                             
T Consensus       157 l~~-----------------------------------------------------------------------------  159 (353)
T 3txo_A          157 LDH-----------------------------------------------------------------------------  159 (353)
T ss_dssp             ECT-----------------------------------------------------------------------------
T ss_pred             ECC-----------------------------------------------------------------------------
Confidence            955                                                                             


Q ss_pred             cccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCC
Q 045988          263 VEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                             ++.+||+|||+|....   ......+||+.|+|||++.+..
T Consensus       160 ---------------------------------------~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  200 (353)
T 3txo_A          160 ---------------------------------------EGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEML  200 (353)
T ss_dssp             ---------------------------------------TSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHH
T ss_pred             ---------------------------------------CCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCC
Confidence                                                   5679999999997532   2345568999999999999888


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      |+.++|||||||++|+|++|.+||.+.+      .......                                       
T Consensus       201 ~~~~~DiwslG~il~ell~G~~Pf~~~~------~~~~~~~---------------------------------------  235 (353)
T 3txo_A          201 YGPAVDWWAMGVLLYEMLCGHAPFEAEN------EDDLFEA---------------------------------------  235 (353)
T ss_dssp             CTTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHH---------------------------------------
T ss_pred             cCCccCCCcchHHHHHHHhCCCCCCCCC------HHHHHHH---------------------------------------
Confidence            9999999999999999999999996543      1222222                                       


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCH------HHHhcCCCCCCC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTA------AQCLTHPWINVG  468 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta------~elL~hp~f~~~  468 (530)
                         +......++...++++.+||.+||+.||.+||++      .|+++||||+.-
T Consensus       236 ---i~~~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f~~~  287 (353)
T 3txo_A          236 ---ILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEI  287 (353)
T ss_dssp             ---HHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGGTTC
T ss_pred             ---HHcCCCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcccCC
Confidence               2222334455567889999999999999999998      999999999864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=2.1e-49  Score=418.89  Aligned_cols=293  Identities=28%  Similarity=0.413  Sum_probs=213.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|+++++||+|+||+||+|+++.+++.||||++....   .....+.+|+.+|++|      .|||||+++++|....
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~  125 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRL------NHDHVVKVLDIVIPKD  125 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHC------CCTTBCCEEEECCCSC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhC------CCCCCCceEEEEecCC
Confidence            579999999999999999999999999999999886532   2346678999999999      7889999999996543


Q ss_pred             -CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 -PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 -~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .....+||||||++++|..++..  ...+++..++.|++||+.||+|||++ |||||||||+||||+.           
T Consensus       126 ~~~~~~~~lv~e~~~~~L~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~-~iiHrDlKp~NILl~~-----------  191 (458)
T 3rp9_A          126 VEKFDELYVVLEIADSDFKKLFRT--PVYLTELHIKTLLYNLLVGVKYVHSA-GILHRDLKPANCLVNQ-----------  191 (458)
T ss_dssp             TTTCCCEEEEECCCSEEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEECT-----------
T ss_pred             cccCceEEEEEeccccchhhhccc--CCCCCHHHHHHHHHHHHHHHHHHHhC-CcCCCCCChhhEEECC-----------
Confidence             23467999999999999999864  34599999999999999999999997 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (458)
T 3rp9_A          192 --------------------------------------------------------------------------------  191 (458)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc------------------------------cccCCCCCC
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY------------------------------KQFTNDIQT  326 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~------------------------------~~~~~~~gt  326 (530)
                                               ++.+||+|||+|+...                              ...+..+||
T Consensus       192 -------------------------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  246 (458)
T 3rp9_A          192 -------------------------DCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVT  246 (458)
T ss_dssp             -------------------------TCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CC
T ss_pred             -------------------------CCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCccc
Confidence                                     4679999999997542                              123456889


Q ss_pred             CCccCChhhc-CCCCCCcchhHHHHHHHHHHHh-----------CCCCCCCCCCCCCC--------------CChHHHHH
Q 045988          327 RQYRCPEVLL-GSKYSTPADLWSFACICFELAT-----------GDVLFDPHSGDNYD--------------RDEDHLAL  380 (530)
Q Consensus       327 ~~y~aPE~l~-~~~~~~~~DiWSlG~il~ellt-----------G~~PF~~~~~~~~~--------------~~~~~l~~  380 (530)
                      ++|+|||++. +..|+.++||||||||||||++           |.++|.+.+.....              ...+++..
T Consensus       247 ~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  326 (458)
T 3rp9_A          247 RWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNV  326 (458)
T ss_dssp             CTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC--------------------CHHHHHHHHH
T ss_pred             ccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccccccccccCCHHHHHH
Confidence            9999999875 5569999999999999999999           78888765532211              12578899


Q ss_pred             HHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHh
Q 045988          381 MMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL  460 (530)
Q Consensus       381 i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL  460 (530)
                      |+.++|.++...+.........       ..+..   .+... ...........++++.+||.+||++||.+|||++|+|
T Consensus       327 i~~~~g~p~~~~~~~~~~~~~~-------~~~~~---~~~~~-~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L  395 (458)
T 3rp9_A          327 IFNILGTPSEEDIEALEKEDAK-------RYIRI---FPKRE-GTDLAERFPASSADAIHLLKRMLVFNPNKRITINECL  395 (458)
T ss_dssp             HHHHHCCCCHHHHHTSSCHHHH-------HHHTT---SCCCC-CCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred             HHHHcCCCCHHHHhhcCCHHHH-------HHHHh---cCCCC-CCCHHHHCCCCCHHHHHHHHHHhccCccccCCHHHHh
Confidence            9999999988765432211000       00000   00000 0000112234578899999999999999999999999


Q ss_pred             cCCCCCCCC
Q 045988          461 THPWINVGP  469 (530)
Q Consensus       461 ~hp~f~~~~  469 (530)
                      +||||+.-.
T Consensus       396 ~Hp~f~~~~  404 (458)
T 3rp9_A          396 AHPFFKEVR  404 (458)
T ss_dssp             HSGGGTTTC
T ss_pred             cCHhhhhcC
Confidence            999999754

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.7e-50  Score=414.23  Aligned_cols=301  Identities=26%  Similarity=0.444  Sum_probs=220.7

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +++.+ .++|+++++||+|+||.||+|.+..+|+.||||++...   ........+|+.+|+.+.     .||||+++++
T Consensus         3 v~~~~-~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~-----~h~niv~l~~   76 (388)
T 3oz6_A            3 VDRHV-LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELS-----GHENIVNLLN   76 (388)
T ss_dssp             -CHHH-HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTT-----TCTTBCCEEE
T ss_pred             ccCcc-cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhcc-----CCCCCCeeee
Confidence            44455 57999999999999999999999999999999987643   233456778999999984     4899999999


Q ss_pred             eeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +|...  +...+|||||||+++|..++..   ..+++..++.++.||+.||+|||++ ||+||||||+|||++.      
T Consensus        77 ~~~~~--~~~~~~lv~e~~~~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~-~ivHrDlkp~NIll~~------  144 (388)
T 3oz6_A           77 VLRAD--NDRDVYLVFDYMETDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLHSG-GLLHRDMKPSNILLNA------  144 (388)
T ss_dssp             EEECT--TSSCEEEEEECCSEEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECT------
T ss_pred             EEecC--CCCEEEEEecccCcCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCCCHHHeEEcC------
Confidence            99854  4468999999999899999864   3599999999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (388)
T 3oz6_A          145 --------------------------------------------------------------------------------  144 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc------------------------cccCCCCCCC
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY------------------------KQFTNDIQTR  327 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~------------------------~~~~~~~gt~  327 (530)
                                                    ++.+||+|||+|+...                        ...+..+||+
T Consensus       145 ------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  194 (388)
T 3oz6_A          145 ------------------------------ECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATR  194 (388)
T ss_dssp             ------------------------------TCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGG
T ss_pred             ------------------------------CCCEEecCCcccccccccccccccccccccccccccccccccccCCcccC
Confidence                                          4679999999996432                        1134568999


Q ss_pred             CccCChhhcC-CCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--ccccc
Q 045988          328 QYRCPEVLLG-SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFN  404 (530)
Q Consensus       328 ~y~aPE~l~~-~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~  404 (530)
                      +|+|||++.+ ..|+.++|||||||++|+|++|.+||.+.+      ..+++..+...+|.++...+......  ..+..
T Consensus       195 ~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~  268 (388)
T 3oz6_A          195 WYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSS------TMNQLERIIGVIDFPSNEDVESIQSPFAKTMIE  268 (388)
T ss_dssp             GGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHH
T ss_pred             CcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHH
Confidence            9999999987 579999999999999999999999997654      67889999999998877654322110  00000


Q ss_pred             ccCccccchhccc---CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          405 RHGDLRHIRRLRF---WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       405 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .............   ++...............++++.+||.+||++||.+|||++|+|+||||+.-.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~Hp~~~~~~  336 (388)
T 3oz6_A          269 SLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSIFH  336 (388)
T ss_dssp             HHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSTTTTTTC
T ss_pred             hCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCCHHHHHhc
Confidence            0000000000000   0000011111122335678899999999999999999999999999998643

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=2.6e-49  Score=392.97  Aligned_cols=281  Identities=29%  Similarity=0.443  Sum_probs=223.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|+++++||+|+||+||+|++..+++.||||++.....   ....+.+|+.+++++      .||||+++++++..   
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~---   72 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL------KHKNIVRLHDVLHS---   72 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTC------CCTTBCCEEEEEEE---
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcC------CCCCEeeEEeEEEe---
Confidence            589999999999999999999999999999999875432   236678899999988      78899999999984   


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                       ...++|||||++++|.+++... ...+++..++.++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        73 -~~~~~lv~e~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~-~ivH~dikp~Nil~~~-------------  136 (292)
T 3o0g_A           73 -DKKLTLVFEFCDQDLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSR-NVLHRDLKPQNLLINR-------------  136 (292)
T ss_dssp             -TTEEEEEEECCSEEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT-------------
T ss_pred             -CCEEEEEEecCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC-------------
Confidence             4789999999988888887643 34599999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (292)
T 3o0g_A          137 --------------------------------------------------------------------------------  136 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~  354 (530)
                                             ++.+||+|||++....   ......+||+.|+|||++.+.. ++.++|||||||++|
T Consensus       137 -----------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  193 (292)
T 3o0g_A          137 -----------------------NGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFA  193 (292)
T ss_dssp             -----------------------TSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHH
T ss_pred             -----------------------CCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHH
Confidence                                   4579999999997543   2244567899999999998766 899999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|..||...     ....+.+..+...++.++...+........+.             ..+...............
T Consensus       194 ~l~~~~~p~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  255 (292)
T 3o0g_A          194 ELANAGRPLFPG-----NDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYK-------------PYPMYPATTSLVNVVPKL  255 (292)
T ss_dssp             HHTTTSCCSCCC-----SSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCC-------------CCCCCCTTCCCTTTSTTC
T ss_pred             HHHHcCCCCcCC-----CCHHHHHHHHHHHhCCCChhhhhhhccccccc-------------ccccccCCcchhhccccc
Confidence            999888775322     23567888888888887765543222111110             000000111112233456


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ++.+.+||.+||++||.+|||++|+|+||||+..
T Consensus       256 ~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  289 (292)
T 3o0g_A          256 NATGRDLLQNLLKCNPVQRISAEEALQHPYFSDF  289 (292)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             ChHHHHHHHHHhccChhhCCCHHHHhcCcccccC
Confidence            7889999999999999999999999999999864

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=7.4e-50  Score=410.90  Aligned_cols=307  Identities=28%  Similarity=0.422  Sum_probs=227.7

Q ss_pred             CCCCCCccccccCcEe--eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcC
Q 045988           24 DYRRGGYHAVRMGDTF--KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEG   98 (530)
Q Consensus        24 ~~~~~~~~~~~~g~~~--~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~   98 (530)
                      .++.++|+++.+|+..  ..++|++++.||+|+||+||+|++..+++.||||++....   .....+.+|+.+++.+   
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l---   81 (371)
T 2xrw_A            5 SKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCV---   81 (371)
T ss_dssp             GGGGGGEEEEEETTEEEEEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHC---
T ss_pred             ccccCcceEeecCCcccchhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhc---
Confidence            3556789999999852  2589999999999999999999999999999999987532   3345678999999999   


Q ss_pred             CCCCCcceeEecceeeecC--CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccC
Q 045988           99 DPDDKKCVVKLLDHFKHSG--PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDL  176 (530)
Q Consensus        99 ~~~~h~~Iv~~~~~~~~~~--~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDI  176 (530)
                         .||||++++++|....  .....+|+||||++++|.+++.    ..+++..+..++.||+.||+|||++ ||+||||
T Consensus        82 ---~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dl  153 (371)
T 2xrw_A           82 ---NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDL  153 (371)
T ss_dssp             ---CCTTBCCEEEEECSCCSTTTCCEEEEEEECCSEEHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCC
T ss_pred             ---CCCCccceEEeeccccccccccceEEEEEcCCCCHHHHHh----hccCHHHHHHHHHHHHHHHHHHHHC-CeecccC
Confidence               7889999999998542  1234899999999889998885    3489999999999999999999997 9999999


Q ss_pred             CCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCC
Q 045988          177 KPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDA  256 (530)
Q Consensus       177 Kp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (530)
                      ||+|||++.                                                                       
T Consensus       154 kp~NIl~~~-----------------------------------------------------------------------  162 (371)
T 2xrw_A          154 KPSNIVVKS-----------------------------------------------------------------------  162 (371)
T ss_dssp             CGGGEEECT-----------------------------------------------------------------------
T ss_pred             CHHHEEEcC-----------------------------------------------------------------------
Confidence            999999954                                                                       


Q ss_pred             CCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChh
Q 045988          257 EPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEV  334 (530)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~  334 (530)
                                                                   ++.+||+|||++......  ....+||+.|+|||+
T Consensus       163 ---------------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~  197 (371)
T 2xrw_A          163 ---------------------------------------------DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV  197 (371)
T ss_dssp             ---------------------------------------------TSCEEECCCCC----------------CTTCCHHH
T ss_pred             ---------------------------------------------CCCEEEEEeecccccccccccCCceecCCccCHHH
Confidence                                                         457999999999764432  345689999999999


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccc-cccccCccccch
Q 045988          335 LLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRD-FFNRHGDLRHIR  413 (530)
Q Consensus       335 l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~  413 (530)
                      +.+..|+.++|||||||++|+|++|.+||.+.+      ..+.+..+...+|.++..++........ +.......... 
T Consensus       198 ~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  270 (371)
T 2xrw_A          198 ILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD------HIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGY-  270 (371)
T ss_dssp             HTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCC-
T ss_pred             hcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCcccccc-
Confidence            999999999999999999999999999997644      5667777887888776665433221100 00000000000 


Q ss_pred             hcccCCchhhhhhh-----ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          414 RLRFWPLNKVLIEK-----YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       414 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                           .+.......     .......+.++.+||.+||++||.+|||++|+|+||||+...
T Consensus       271 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~  326 (371)
T 2xrw_A          271 -----SFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWY  326 (371)
T ss_dssp             -----CHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTTC
T ss_pred             -----chhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchhhhc
Confidence                 000000000     001122367899999999999999999999999999998654

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-48  Score=401.63  Aligned_cols=298  Identities=27%  Similarity=0.417  Sum_probs=230.9

Q ss_pred             CCccccccCcEe--eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCC
Q 045988           28 GGYHAVRMGDTF--KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        28 ~~~~~~~~g~~~--~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      ++|+...++...  ..++|++++.||+|+||.||+|.+..+|+.||||++....   .....+.+|+++|+.+      .
T Consensus         9 ~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~   82 (367)
T 1cm8_A            9 SGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM------R   82 (367)
T ss_dssp             CSBCCEECSSSEECCBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHC------C
T ss_pred             CCceEEEecCceeeecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhC------C
Confidence            445544444332  2578999999999999999999999999999999885432   2345678999999999      7


Q ss_pred             CcceeEecceeeecCC--CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          103 KKCVVKLLDHFKHSGP--NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~~--~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                      ||||+++++++.....  ....+|+||||++++|.+++..   ..+++..++.++.||+.||+|||++ ||+||||||+|
T Consensus        83 hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~~-~ivH~Dlkp~N  158 (367)
T 1cm8_A           83 HENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAA-GIIHRDLKPGN  158 (367)
T ss_dssp             BTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGG
T ss_pred             CcCCCCceeeEecCCccccCceEEEEEecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCcCHHH
Confidence            8889999999985421  1246799999999999999874   3599999999999999999999997 99999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      ||++.                                                                           
T Consensus       159 Ill~~---------------------------------------------------------------------------  163 (367)
T 1cm8_A          159 LAVNE---------------------------------------------------------------------------  163 (367)
T ss_dssp             EEECT---------------------------------------------------------------------------
T ss_pred             EEEcC---------------------------------------------------------------------------
Confidence            99954                                                                           


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CC
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SK  339 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~  339 (530)
                                                               ++.+||+|||++.......+..+||++|+|||++.+ ..
T Consensus       164 -----------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~  202 (367)
T 1cm8_A          164 -----------------------------------------DCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMR  202 (367)
T ss_dssp             -----------------------------------------TCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTC
T ss_pred             -----------------------------------------CCCEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCC
Confidence                                                     457999999999887666777899999999999987 67


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--cccccccCccccchhccc
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  417 (530)
                      |+.++|||||||++|+|++|++||.+..      ..+++..+...+|.++..++......  ..+........      .
T Consensus       203 ~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~  270 (367)
T 1cm8_A          203 YTQTVDIWSVGCIMAEMITGKTLFKGSD------HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELE------K  270 (367)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCC------C
T ss_pred             CChhhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCC------C
Confidence            9999999999999999999999997654      67889999999999988765433211  00000000000      0


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ..       ........++.+.+||.+||++||.+|||+.|+|+||||+....
T Consensus       271 ~~-------~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~  316 (367)
T 1cm8_A          271 KD-------FASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD  316 (367)
T ss_dssp             CC-------GGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-
T ss_pred             CC-------HHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhcC
Confidence            00       00123355788999999999999999999999999999987644

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=5.5e-50  Score=399.66  Aligned_cols=263  Identities=21%  Similarity=0.235  Sum_probs=189.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      .+|.+.++||+|+||+||+|++  +|+.||||+++...........|+.++.+|      +|||||++++++...+....
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l------~HpNIv~l~g~~~~~~~~~~   74 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREERSWFREAEIYQTVML------RHENILGFIAADNKDNGTWT   74 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGHHHHHHHHHHHTSTTC------CCTTBCCEEEEEEEECSSSE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccchhhHHHHHHHHHHhcC------CCCCCCcEEEEEEecCCCce
Confidence            5799999999999999999976  689999999876543222223344444455      79999999999987654456


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh-------CCceeccCCCCcEEEeeccCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRE-------LSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~-------~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .+||||||| +|+|.+++..   ..+++..+..|+.|++.||+|||++       .+||||||||+||||+.        
T Consensus        75 ~~~lV~Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~--------  143 (303)
T 3hmm_A           75 QLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK--------  143 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECT--------
T ss_pred             EEEEEecCCCCCcHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECC--------
Confidence            899999999 8999999964   3489999999999999999999963       28999999999999965        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (303)
T 3hmm_A          144 --------------------------------------------------------------------------------  143 (303)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcCC------CC
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLGS------KY  340 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~~------~~  340 (530)
                                                  ++.+||+|||+|+.....       ....+||+.|||||++.+.      .|
T Consensus       144 ----------------------------~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~  195 (303)
T 3hmm_A          144 ----------------------------NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFES  195 (303)
T ss_dssp             ----------------------------TSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHH
T ss_pred             ----------------------------CCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCcc
Confidence                                        567999999999754322       2345799999999999764      36


Q ss_pred             CCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCC-----ChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhc
Q 045988          341 STPADLWSFACICFELATGDVLFDPHSGDNYDR-----DEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL  415 (530)
Q Consensus       341 ~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~-----~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (530)
                      +.++|||||||+||||+||.+||.........-     .......+......                           .
T Consensus       196 ~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---------------------------~  248 (303)
T 3hmm_A          196 FKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCE---------------------------Q  248 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT---------------------------S
T ss_pred             ChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhc---------------------------c
Confidence            779999999999999999999886443221100     00001111111000                           0


Q ss_pred             ccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      .   ..+.... ...+...+..+.+|+.+||+.||.+|||+.|+++.
T Consensus       249 ~---~rp~~p~-~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  291 (303)
T 3hmm_A          249 K---LRPNIPN-RWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             C---CCCCCCG-GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             c---CCCCCCc-cccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            0   0000000 00112345678999999999999999999999863

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-49  Score=413.08  Aligned_cols=305  Identities=25%  Similarity=0.382  Sum_probs=216.7

Q ss_pred             CCCEEE-EEEeccccceEEEEEEeC--CCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVV-QSKLGWGHFSTVWLAWDT--QTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i-~~~LG~G~fg~Vy~a~~~--~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+.|.+ .++||+|+||+||+|+++  .+++.||||++..... ...+.+|+.+|++|      .|||||+++++|... 
T Consensus        19 ~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~E~~~l~~l------~hpniv~~~~~~~~~-   90 (405)
T 3rgf_A           19 EDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-SMSACREIALLREL------KHPNVISLQKVFLSH-   90 (405)
T ss_dssp             HHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-CHHHHHHHHHHHHC------CCTTBCCCCEEEEET-
T ss_pred             hhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-CHHHHHHHHHHHhc------CCCCeeeEeeEEecC-
Confidence            356887 458999999999999966  5689999999876543 45788999999999      788999999999754 


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhcc-------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADY-------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~-------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                       ....+||||||++++|.+++.....       ..+++..++.|+.||+.||+|||++ ||+||||||+||||....+  
T Consensus        91 -~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~-~ivH~Dlkp~NIll~~~~~--  166 (405)
T 3rgf_A           91 -ADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEGP--  166 (405)
T ss_dssp             -TTTEEEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECCSST--
T ss_pred             -CCCeEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC-CEeCCCcCHHHeEEecCCC--
Confidence             4578999999999999998864331       2389999999999999999999997 9999999999999943110  


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (405)
T 3rgf_A          167 --------------------------------------------------------------------------------  166 (405)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcCC-CCCCc
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLGS-KYSTP  343 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~~-~~~~~  343 (530)
                                                    ..+.+||+|||+|+....      .....+||+.|+|||++.+. .|+.+
T Consensus       167 ------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  216 (405)
T 3rgf_A          167 ------------------------------ERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKA  216 (405)
T ss_dssp             ------------------------------TTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHH
T ss_pred             ------------------------------CCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccch
Confidence                                          045799999999976432      23456899999999999875 48999


Q ss_pred             chhHHHHHHHHHHHhCCCCCCCCCCC---CCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          344 ADLWSFACICFELATGDVLFDPHSGD---NYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       344 ~DiWSlG~il~elltG~~PF~~~~~~---~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      +|||||||++|+|++|.+||.+....   ......+++..++..+|.++...|...............++..   . ...
T Consensus       217 ~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~  292 (405)
T 3rgf_A          217 IDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRN---T-YTN  292 (405)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGG---G-GTT
T ss_pred             hhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhcccc---C-CCc
Confidence            99999999999999999999765432   1223468899999999988876553322111110000000000   0 000


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      ..............++.+.+||.+||++||.+|||++|+|+||||+..+..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~~  343 (405)
T 3rgf_A          293 CSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLP  343 (405)
T ss_dssp             CCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSCC
T ss_pred             chhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhccCCCC
Confidence            000000011122236789999999999999999999999999999987643

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.2e-49  Score=393.28  Aligned_cols=272  Identities=25%  Similarity=0.368  Sum_probs=218.9

Q ss_pred             cccCCCCCCCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHH
Q 045988           18 EDEGTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQ   94 (530)
Q Consensus        18 ~~e~~~~~~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~   94 (530)
                      +++..+.|..++|+|+.+|+.+ .++|++.++||+|+||+||+|++..+++.||||++.....   .......|+..+.+
T Consensus        34 ~~~~~~~~~~~~~~p~~~~~~~-~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~  112 (311)
T 3p1a_A           34 RGEASETLQSPGYDPSRPESFF-QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEK  112 (311)
T ss_dssp             SCCSCSSCCCTTCCTTSSSCHH-HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCCCCCCCccchh-hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHH
Confidence            4566778999999999999998 5799999999999999999999999999999998765422   23344556665555


Q ss_pred             hhcCCCCCCcceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceec
Q 045988           95 IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHT  174 (530)
Q Consensus        95 l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHr  174 (530)
                      +.     .||||++++++|.    .+..+||||||++++|.+++.... ..+++..++.|+.||+.||+|||++ ||+||
T Consensus       113 ~~-----~h~~iv~l~~~~~----~~~~~~lv~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~  181 (311)
T 3p1a_A          113 VG-----QHPCCVRLEQAWE----EGGILYLQTELCGPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQ-GLVHL  181 (311)
T ss_dssp             HC-----CCTTBCCEEEEEE----ETTEEEEEEECCCCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECC
T ss_pred             hc-----CCCcEEEEEEEEE----eCCEEEEEEeccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEecC
Confidence            53     7899999999998    457899999999999999887543 4599999999999999999999997 99999


Q ss_pred             cCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCC
Q 045988          175 DLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSV  254 (530)
Q Consensus       175 DIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (530)
                      ||||+|||++.                                                                     
T Consensus       182 Dikp~NIll~~---------------------------------------------------------------------  192 (311)
T 3p1a_A          182 DVKPANIFLGP---------------------------------------------------------------------  192 (311)
T ss_dssp             CCSGGGEEECG---------------------------------------------------------------------
T ss_pred             CCCHHHEEECC---------------------------------------------------------------------
Confidence            99999999955                                                                     


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCC
Q 045988          255 DAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCP  332 (530)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aP  332 (530)
                                                                     ++.+||+|||++......  .....||+.|+||
T Consensus       193 -----------------------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aP  225 (311)
T 3p1a_A          193 -----------------------------------------------RGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAP  225 (311)
T ss_dssp             -----------------------------------------------GGCEEECCCTTCEECC------CCCCCGGGCCG
T ss_pred             -----------------------------------------------CCCEEEccceeeeecccCCCCcccCCCccccCH
Confidence                                                           567999999998764322  3445799999999


Q ss_pred             hhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccc
Q 045988          333 EVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI  412 (530)
Q Consensus       333 E~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  412 (530)
                      |++.+ .++.++|||||||++|+|++|..||.+         ......+..  +..+.                      
T Consensus       226 E~~~~-~~~~~~DiwslG~il~el~~g~~~~~~---------~~~~~~~~~--~~~~~----------------------  271 (311)
T 3p1a_A          226 ELLQG-SYGTAADVFSLGLTILEVACNMELPHG---------GEGWQQLRQ--GYLPP----------------------  271 (311)
T ss_dssp             GGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSS---------HHHHHHHTT--TCCCH----------------------
T ss_pred             hHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCC---------ccHHHHHhc--cCCCc----------------------
Confidence            99987 799999999999999999999766632         111111100  00000                      


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                                      .++...++++.+||.+||++||.+|||+.|+|+||||++
T Consensus       272 ----------------~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~~~~  310 (311)
T 3p1a_A          272 ----------------EFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQ  310 (311)
T ss_dssp             ----------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGSC
T ss_pred             ----------------ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhCccccC
Confidence                            112245688999999999999999999999999999985

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-49  Score=401.03  Aligned_cols=251  Identities=27%  Similarity=0.424  Sum_probs=211.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|.+.+.||+|+||+||+|++..+++.||||++...    ......+.+|+.+|+.+      .||||+++++++.  
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~l~~~~~--   79 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLL------RHPHIIKLYDVIT--   79 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTC------CCTTBCCEEEEEE--
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhC------CCCCCCeEEEEEE--
Confidence            47999999999999999999999999999999998753    22345788999999988      7889999999998  


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ....+++||||++++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+|||++.           
T Consensus        80 --~~~~~~lv~E~~~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-givH~Dlkp~NIll~~-----------  143 (336)
T 3h4j_B           80 --TPTDIVMVIEYAGGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHRH-KIVHRDLKPENLLLDD-----------  143 (336)
T ss_dssp             --CSSEEEEEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSTTTEEECT-----------
T ss_pred             --eCCEEEEEEECCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCchhhEEEcC-----------
Confidence              45789999999999999988754  4599999999999999999999998 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (336)
T 3h4j_B          144 --------------------------------------------------------------------------------  143 (336)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCC-CCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKY-STPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~-~~~~DiWSlG~il  353 (530)
                                               ++.+||+|||++.....  .....+||+.|+|||++.+..+ +.++|||||||++
T Consensus       144 -------------------------~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il  198 (336)
T 3h4j_B          144 -------------------------NLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVL  198 (336)
T ss_dssp             -------------------------TCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHH
T ss_pred             -------------------------CCCEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHH
Confidence                                     46799999999975432  2456689999999999998876 7899999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|..||........                                                ...+....+.++..
T Consensus       199 ~~ll~g~~Pf~~~~~~~~------------------------------------------------~~~i~~~~~~~p~~  230 (336)
T 3h4j_B          199 YVMLVGRLPFDDEFIPNL------------------------------------------------FKKVNSCVYVMPDF  230 (336)
T ss_dssp             HHHHHSSCSSBCSSSTTC------------------------------------------------BCCCCSSCCCCCTT
T ss_pred             HHHHhCCCCCCCccHHHH------------------------------------------------HHHHHcCCCCCccc
Confidence            999999999964331111                                                00111112234455


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .++++.+||.+||..||.+|||+.|+|+||||+..
T Consensus       231 ~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~  265 (336)
T 3h4j_B          231 LSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVN  265 (336)
T ss_dssp             SCHHHHHHHHTTSCSSGGGSCCHHHHTTCHHHHTT
T ss_pred             CCHHHHHHHHHHcCCChhHCcCHHHHHhChhhccC
Confidence            67899999999999999999999999999999875

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=6e-49  Score=402.09  Aligned_cols=258  Identities=28%  Similarity=0.404  Sum_probs=211.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-------chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .++|++.+.||+|+||+||+|+++.+|+.||+|++++...       ..+.+.+|+.+|+++      .||||++++++|
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~l~~~~   84 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQV------LHPNIITLHDVY   84 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTC------CCTTBCCEEEEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhC------CCcCCCcEEEEE
Confidence            5789999999999999999999999999999999876532       246788999999998      789999999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      .    +...+||||||| +++|.+++..  ...+++..+..++.||+.||.|||++ ||+||||||+|||+......   
T Consensus        85 ~----~~~~~~lv~e~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDlkp~NIll~~~~~~---  154 (361)
T 2yab_A           85 E----NRTDVVLILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLHTK-KIAHFDLKPENIMLLDKNIP---  154 (361)
T ss_dssp             E----CSSEEEEEEECCCSCBHHHHHTT--CSCCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESCTTSS---
T ss_pred             E----eCCEEEEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEeCCCCC---
Confidence            8    457899999999 8999999864  34599999999999999999999997 99999999999999542100   


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (361)
T 2yab_A          155 --------------------------------------------------------------------------------  154 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                   ...+||+|||++.....  .....+||+.|+|||++.+..|+.++||||||
T Consensus       155 -----------------------------~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  205 (361)
T 2yab_A          155 -----------------------------IPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIG  205 (361)
T ss_dssp             -----------------------------SCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHH
T ss_pred             -----------------------------ccCEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHH
Confidence                                         13699999999976433  34566899999999999998999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+.+      ....+..+.......+..                                      +
T Consensus       206 vil~~ll~g~~Pf~~~~------~~~~~~~i~~~~~~~~~~--------------------------------------~  241 (361)
T 2yab_A          206 VITYILLSGASPFLGDT------KQETLANITAVSYDFDEE--------------------------------------F  241 (361)
T ss_dssp             HHHHHHHHSCCSSCCSS------HHHHHHHHHTTCCCCCHH--------------------------------------H
T ss_pred             HHHHHHHhCCCCCCCCC------HHHHHHHHHhcCCCCCch--------------------------------------h
Confidence            99999999999996532      222222222111111111                                      1


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      +...++.+.+||.+||..||.+|||+.|+|+||||+.
T Consensus       242 ~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~  278 (361)
T 2yab_A          242 FSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITP  278 (361)
T ss_dssp             HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTSC
T ss_pred             ccCCCHHHHHHHHHHCCCChhHCcCHHHHhcCcCcCC
Confidence            1245678999999999999999999999999999985

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=6.7e-49  Score=405.83  Aligned_cols=261  Identities=25%  Similarity=0.357  Sum_probs=214.9

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +..++|+++++||+|+||+||+|+++.+++.||||++++..    .....+.+|..+|.++.     .|||||+++++|.
T Consensus        49 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~-----~hp~Iv~l~~~~~  123 (396)
T 4dc2_A           49 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQAS-----NHPFLVGLHSCFQ  123 (396)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHT-----TCTTBCCEEEEEE
T ss_pred             CChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcC-----CCCCcCeeEEEEE
Confidence            44578999999999999999999999999999999988643    23345788999998874     6899999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          +...+||||||| +++|..++...  ..+++..++.++.||+.||+|||++ |||||||||+||||+.        
T Consensus       124 ----~~~~~~lV~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-givHrDLKp~NILl~~--------  188 (396)
T 4dc2_A          124 ----TESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER-GIIYRDLKLDNVLLDS--------  188 (396)
T ss_dssp             ----CSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEECT--------
T ss_pred             ----ECCEEEEEEEcCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEeccCCHHHEEECC--------
Confidence                457999999999 88999988753  4599999999999999999999997 9999999999999955        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (396)
T 4dc2_A          189 --------------------------------------------------------------------------------  188 (396)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                  ++.+||+|||+|+..   .......+||+.|+|||++.+..|+.++||||||
T Consensus       189 ----------------------------~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslG  240 (396)
T 4dc2_A          189 ----------------------------EGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALG  240 (396)
T ss_dssp             ----------------------------TSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHH
T ss_pred             ----------------------------CCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHH
Confidence                                        567999999999752   2335567899999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCC--CChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          351 CICFELATGDVLFDPHSGDNYD--RDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~--~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |++|+|++|.+||.........  .....+                                         ...+....+
T Consensus       241 vllyell~G~~Pf~~~~~~~~~~~~~~~~~-----------------------------------------~~~i~~~~~  279 (396)
T 4dc2_A          241 VLMFEMMAGRSPFDIVGSSDNPDQNTEDYL-----------------------------------------FQVILEKQI  279 (396)
T ss_dssp             HHHHHHHHSSCSSTTTTC------CCHHHH-----------------------------------------HHHHHHCCC
T ss_pred             HHHHHHHhCCCCCcccccccccchhhHHHH-----------------------------------------HHHHhcccc
Confidence            9999999999999654321110  011111                                         112223334


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCH------HHHhcCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTA------AQCLTHPWINVG  468 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta------~elL~hp~f~~~  468 (530)
                      .++...+.++.+||.+||+.||.+||++      .|+++||||+.-
T Consensus       280 ~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i  325 (396)
T 4dc2_A          280 RIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  325 (396)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTC
T ss_pred             CCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCC
Confidence            5666778899999999999999999985      899999999864

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=2.9e-49  Score=400.82  Aligned_cols=251  Identities=23%  Similarity=0.381  Sum_probs=211.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|++++.||+|+||+||+|+++.+|+.||||++++.    ......+.+|+.+|+.+      .||||++++++|.  
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~l~~~~~--   75 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT------RHPFLTALKYAFQ--   75 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CCTTBCCEEEEEE--
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhC------CCCcCcceEEEEE--
Confidence            47899999999999999999999999999999998764    23456778899999887      7899999999998  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        ....+||||||+ +++|..++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.          
T Consensus        76 --~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~----------  140 (337)
T 1o6l_A           76 --THDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSR-DVVYRDIKLENLMLDK----------  140 (337)
T ss_dssp             --CSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEECT----------
T ss_pred             --eCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCcCCHHHEEECC----------
Confidence              457899999999 88999988743  4599999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (337)
T 1o6l_A          141 --------------------------------------------------------------------------------  140 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                                ++.+||+|||++....   ......+||+.|+|||++.+..|+.++|||||||+
T Consensus       141 --------------------------~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~i  194 (337)
T 1o6l_A          141 --------------------------DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVV  194 (337)
T ss_dssp             --------------------------TSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHH
T ss_pred             --------------------------CCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhH
Confidence                                      4679999999997532   23456689999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|.+||....      .......                                          +......++.
T Consensus       195 l~ell~g~~Pf~~~~------~~~~~~~------------------------------------------i~~~~~~~p~  226 (337)
T 1o6l_A          195 MYEMMCGRLPFYNQD------HERLFEL------------------------------------------ILMEEIRFPR  226 (337)
T ss_dssp             HHHHHHSSCSSCCSS------HHHHHHH------------------------------------------HHHCCCCCCT
T ss_pred             HHHHhcCCCCCCCCC------HHHHHHH------------------------------------------HHcCCCCCCC
Confidence            999999999996432      1111111                                          1112233455


Q ss_pred             hcHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      ..++++.+||.+||+.||.+||     ++.|+++||||+.-
T Consensus       227 ~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~~  267 (337)
T 1o6l_A          227 TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI  267 (337)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             CCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCCC
Confidence            6678999999999999999999     99999999999864

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2.9e-49  Score=397.73  Aligned_cols=251  Identities=25%  Similarity=0.422  Sum_probs=214.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|++++.||+|+||+||+|+++.+|+.||||++++..    ...+.+.+|+.+++.+      .||||++++++|.  
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~Iv~~~~~~~--   76 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV------THPFIIRMWGTFQ--   76 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CBTTBCCEEEEEE--
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhC------CCCCCceEeEEEE--
Confidence            478999999999999999999999999999999987642    3356677899999888      7889999999998  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        +...+|+||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.          
T Consensus        77 --~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~----------  141 (318)
T 1fot_A           77 --DAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSK-DIIYRDLKPENILLDK----------  141 (318)
T ss_dssp             --CSSEEEEEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECT----------
T ss_pred             --eCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChheEEEcC----------
Confidence              457899999999 88999999743  4599999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (318)
T 1fot_A          142 --------------------------------------------------------------------------------  141 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                                ++.+||+|||++..........+||+.|+|||++.+..|+.++|||||||++|+
T Consensus       142 --------------------------~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  195 (318)
T 1fot_A          142 --------------------------NGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYE  195 (318)
T ss_dssp             --------------------------TSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHH
T ss_pred             --------------------------CCCEEEeecCcceecCCccccccCCccccCHhHhcCCCCCcccchhhhHHHHHH
Confidence                                      467999999999876666667789999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||...+      .......                                          +......++...+
T Consensus       196 ll~g~~pf~~~~------~~~~~~~------------------------------------------i~~~~~~~p~~~~  227 (318)
T 1fot_A          196 MLAGYTPFYDSN------TMKTYEK------------------------------------------ILNAELRFPPFFN  227 (318)
T ss_dssp             HHHSSCTTCCSS------HHHHHHH------------------------------------------HHHCCCCCCTTSC
T ss_pred             HHhCCCCCCCCC------HHHHHHH------------------------------------------HHhCCCCCCCCCC
Confidence            999999996432      1111111                                          1122233445567


Q ss_pred             HHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      +++.+||.+||+.||.+||     +++|+++||||+.-
T Consensus       228 ~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~~  265 (318)
T 1fot_A          228 EDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEV  265 (318)
T ss_dssp             HHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSC
T ss_pred             HHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCccccCC
Confidence            8999999999999999999     99999999999864

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=7.5e-48  Score=394.87  Aligned_cols=299  Identities=26%  Similarity=0.394  Sum_probs=233.7

Q ss_pred             CCCCccccccCcEee-CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCC
Q 045988           26 RRGGYHAVRMGDTFK-NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        26 ~~~~~~~~~~g~~~~-~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      ..|+++.+..|+.+. .++|+++++||+|+||.||+|++..+++.||||++....  .....+.+|+++|+++      .
T Consensus        10 ~~~~~~~~~~g~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~   83 (364)
T 3qyz_A           10 AAAAGPEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRF------R   83 (364)
T ss_dssp             -----CCBCC-CBCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHC------C
T ss_pred             HhhcceEEEccEeccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhc------C
Confidence            457788899999985 479999999999999999999999999999999987533  2346778999999999      7


Q ss_pred             CcceeEecceeeecC-CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcE
Q 045988          103 KKCVVKLLDHFKHSG-PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENV  181 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~-~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NI  181 (530)
                      ||||+++++++.... ......|+||||++++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+||
T Consensus        84 h~niv~~~~~~~~~~~~~~~~~~iv~e~~~~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NI  159 (364)
T 3qyz_A           84 HENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSA-NVLHRDLKPSNL  159 (364)
T ss_dssp             CTTBCCCCEEECCSSTTTCCCEEEEEECCSEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGE
T ss_pred             CCCCccceeEEecCCccccceEEEEEcccCcCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCChHhE
Confidence            888999999997542 22357999999998899999864   3499999999999999999999997 999999999999


Q ss_pred             EEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 045988          182 LLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGD  261 (530)
Q Consensus       182 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (530)
                      |++.                                                                            
T Consensus       160 l~~~----------------------------------------------------------------------------  163 (364)
T 3qyz_A          160 LLNT----------------------------------------------------------------------------  163 (364)
T ss_dssp             EECT----------------------------------------------------------------------------
T ss_pred             EECC----------------------------------------------------------------------------
Confidence            9954                                                                            


Q ss_pred             CcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhh
Q 045988          262 SVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVL  335 (530)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l  335 (530)
                                                              ++.++|+|||++......      ....+||+.|+|||++
T Consensus       164 ----------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~  203 (364)
T 3qyz_A          164 ----------------------------------------TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIM  203 (364)
T ss_dssp             ----------------------------------------TCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHH
T ss_pred             ----------------------------------------CCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHh
Confidence                                                    457999999999754322      3456899999999987


Q ss_pred             cCC-CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccc--ccccccCccccc
Q 045988          336 LGS-KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSR--DFFNRHGDLRHI  412 (530)
Q Consensus       336 ~~~-~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~  412 (530)
                      .+. .++.++|||||||++|+|++|.+||.+..      ..+.+..+...+|.++...+.......  .+.....     
T Consensus       204 ~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  272 (364)
T 3qyz_A          204 LNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH------YLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLP-----  272 (364)
T ss_dssp             HTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSS------GGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSC-----
T ss_pred             cCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcC-----
Confidence            654 58999999999999999999999997654      678889999999988876553321110  0000000     


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                       .....+.       ..+....++++.+||.+||++||.+|||+.|+|+||||+...
T Consensus       273 -~~~~~~~-------~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~  321 (364)
T 3qyz_A          273 -HKNKVPW-------NRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYY  321 (364)
T ss_dssp             -CCCCCCH-------HHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTC
T ss_pred             -CccCCCH-------HHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhhcc
Confidence             0000000       011234567899999999999999999999999999999763

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=9.3e-49  Score=393.94  Aligned_cols=289  Identities=31%  Similarity=0.501  Sum_probs=214.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|+++++||+|+||+||+|.+..+|+.||||+++...  .....+.+|+.+|+++      .||||+++++++.    
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~----   73 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKEL------KHENIVRLYDVIH----   73 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTC------CBTTBCCEEEEEC----
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhc------CCCCcceEEEEEE----
Confidence            468999999999999999999999999999999887543  2346788999999998      7888999999998    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADY----RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~----~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                      ....+||||||+.++|.+++.....    ..+++..++.++.||+.||+|||++ ||+||||||+|||++.         
T Consensus        74 ~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~-~ivH~Dlkp~NIl~~~---------  143 (317)
T 2pmi_A           74 TENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN-KILHRDLKPQNLLINK---------  143 (317)
T ss_dssp             CTTEEEEEEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECT---------
T ss_pred             ECCeEEEEEEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCChHHeEEcC---------
Confidence            4578999999998899999875432    3489999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (317)
T 2pmi_A          144 --------------------------------------------------------------------------------  143 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFA  350 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG  350 (530)
                                                 ++.+||+|||++.....   .....+||+.|+|||++.+. .|+.++||||||
T Consensus       144 ---------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG  196 (317)
T 2pmi_A          144 ---------------------------RGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCG  196 (317)
T ss_dssp             ---------------------------TCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHH
T ss_pred             ---------------------------CCCEEECcCccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHH
Confidence                                       45799999999976432   24456889999999999874 689999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+..      ....+..+...+|.++...+........+.....      ......+.....  ...
T Consensus       197 ~il~el~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~  262 (317)
T 2pmi_A          197 CILAEMITGKPLFPGTN------DEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQ------QRPPRDLRQVLQ--PHT  262 (317)
T ss_dssp             HHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCC------CCCCCCSHHHHG--GGC
T ss_pred             HHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCChhHhhhhhhhhhcccccc------cccchhHHHhhc--ccc
Confidence            99999999999997544      5678888889898877665433221111100000      000000111111  112


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ....+.++.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       263 ~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~  302 (317)
T 2pmi_A          263 KEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYH  302 (317)
T ss_dssp             SSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCC
T ss_pred             cccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhcccc
Confidence            3345788999999999999999999999999999987543

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.3e-48  Score=387.18  Aligned_cols=279  Identities=29%  Similarity=0.439  Sum_probs=216.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|+++++||+|+||+||+|++ .+++.||+|++....   .....+.+|+.+++++      .||||+++++++.    
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~----   70 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKEL------KHSNIVKLYDVIH----   70 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGC------CCTTBCCEEEEEE----
T ss_pred             ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhc------CCCCEeeeeeEEc----
Confidence            6899999999999999999998 678999999886543   2346778999999988      7889999999998    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....+|+||||+.++|.+++... ...+++..++.++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        71 ~~~~~~lv~e~~~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~-------------  135 (288)
T 1ob3_A           71 TKKRLVLVFEHLDQDLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCHDR-RVLHRDLKPQNLLINR-------------  135 (288)
T ss_dssp             CSSCEEEEEECCSEEHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT-------------
T ss_pred             cCCeEEEEEEecCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEcC-------------
Confidence            44789999999988999988743 34599999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (288)
T 1ob3_A          136 --------------------------------------------------------------------------------  135 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~  354 (530)
                                             ++.+||+|||++....   .......||+.|+|||++.+. .++.++|||||||++|
T Consensus       136 -----------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  192 (288)
T 1ob3_A          136 -----------------------EGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFA  192 (288)
T ss_dssp             -----------------------TSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHH
T ss_pred             -----------------------CCCEEEeECccccccCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHH
Confidence                                   4679999999997543   223455789999999999764 5899999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||.+.+      ..+.+..+...++..+...+........+-....   .        ....  ....+....
T Consensus       193 ~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~--~~~~~~~~~  253 (288)
T 1ob3_A          193 EMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT---V--------YEPL--PWESFLKGL  253 (288)
T ss_dssp             HHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCC---C--------CCCC--CGGGTCCSC
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHHHHCCCChhhchhhhcccccccccc---c--------ccCc--cHHHHhhhc
Confidence            9999999997543      5677788888888776544322111000000000   0        0000  000123346


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ++++.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       254 ~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  287 (288)
T 1ob3_A          254 DESGIDLLSKMLKLDPNQRITAKQALEHAYFKEN  287 (288)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC-
T ss_pred             CHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhc
Confidence            7889999999999999999999999999999853

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=4.4e-49  Score=398.38  Aligned_cols=288  Identities=30%  Similarity=0.466  Sum_probs=219.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ...++|+++++||+|+||+||+|++..+++.||||+++....   ....+.+|+.+|+++      .||||+++++++..
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~  104 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKEL------QHRNIIELKSVIHH  104 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGC------CCTTBCCEEEEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHc------CCCCcceEEEEEec
Confidence            345899999999999999999999999999999999875432   234567899999998      78899999999984


Q ss_pred             cCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                          ...+||||||+.++|.+++...  ..+++..++.|+.||+.||+|||++ ||+||||||+|||+......      
T Consensus       105 ----~~~~~lv~e~~~~~L~~~~~~~--~~~~~~~~~~i~~ql~~~l~~LH~~-~ivH~Dlkp~NIll~~~~~~------  171 (329)
T 3gbz_A          105 ----NHRLHLIFEYAENDLKKYMDKN--PDVSMRVIKSFLYQLINGVNFCHSR-RCLHRDLKPQNLLLSVSDAS------  171 (329)
T ss_dssp             ----TTEEEEEEECCSEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEC----------
T ss_pred             ----CCEEEEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEECCCCCHHHEEEecCCCC------
Confidence                4789999999988999999743  3499999999999999999999997 99999999999999542100      


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (329)
T 3gbz_A          172 --------------------------------------------------------------------------------  171 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCC-CCCcchhHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFAC  351 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~  351 (530)
                                               ....+||+|||++....   ......+||+.|+|||++.+.. |+.++|||||||
T Consensus       172 -------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~  226 (329)
T 3gbz_A          172 -------------------------ETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIAC  226 (329)
T ss_dssp             --------------------------CCEEEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHH
T ss_pred             -------------------------ccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHH
Confidence                                     04569999999997543   2345567899999999998754 899999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|.+||.+..      ..+.+..+...++.++...+........+.........      ..+..      .+.
T Consensus       227 il~ell~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~  288 (329)
T 3gbz_A          227 IWAEMLMKTPLFPGDS------EIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRG------KTLKR------VLG  288 (329)
T ss_dssp             HHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCC------CCHHH------HHG
T ss_pred             HHHHHHHCCCCcCCCC------HHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhcc------ccHhh------hcc
Confidence            9999999999997544      66788888888887776554322211111111111000      00011      112


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ...++++.+||.+||++||.+|||+.|+|+||||+..
T Consensus       289 ~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  325 (329)
T 3gbz_A          289 ALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHN  325 (329)
T ss_dssp             GGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSS
T ss_pred             cccCHHHHHHHHHHccCChhhCCCHHHHhCCcccCCC
Confidence            2356789999999999999999999999999999864

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=7.4e-48  Score=403.99  Aligned_cols=294  Identities=28%  Similarity=0.411  Sum_probs=223.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|.+.+.||+|+||.||+|++..+++.||||++....   .....+.+|+.+|+++      .||||+++++++....
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~nIv~l~~~~~~~~   98 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRL------KSDYIIRLYDLIIPDD   98 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHC------CCTTBCCEEEECCCSC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHc------CCCCcceEEEEEecCC
Confidence            579999999999999999999999999999999987532   2346778999999999      7888999999997542


Q ss_pred             -CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 -PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 -~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .....+||||||++++|.+++..  ...+++..++.+++||+.||+|||++ ||+||||||+||||+.           
T Consensus        99 ~~~~~~~~lv~e~~~~~L~~~~~~--~~~l~~~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~-----------  164 (432)
T 3n9x_A           99 LLKFDELYIVLEIADSDLKKLFKT--PIFLTEEHIKTILYNLLLGENFIHES-GIIHRDLKPANCLLNQ-----------  164 (432)
T ss_dssp             TTTCCCEEEEEECCSEEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECT-----------
T ss_pred             CCcCCeEEEEEecCCcCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCHHHeEECC-----------
Confidence             11257999999999999999964  34599999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (432)
T 3n9x_A          165 --------------------------------------------------------------------------------  164 (432)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-------------------------ccCCCCCCCCccC
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-------------------------QFTNDIQTRQYRC  331 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-------------------------~~~~~~gt~~y~a  331 (530)
                                               ++.+||+|||+|+....                         ..+..+||++|+|
T Consensus       165 -------------------------~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  219 (432)
T 3n9x_A          165 -------------------------DCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRA  219 (432)
T ss_dssp             -------------------------TCCEEECCCTTCEEC-------------------------------CCCCCTTCC
T ss_pred             -------------------------CCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccC
Confidence                                     46799999999975432                         2366789999999


Q ss_pred             Chhhc-CCCCCCcchhHHHHHHHHHHHhC-----------CCCCCCCCCCCCC-----------CChHHHHHHHHHhCCC
Q 045988          332 PEVLL-GSKYSTPADLWSFACICFELATG-----------DVLFDPHSGDNYD-----------RDEDHLALMMELLGMM  388 (530)
Q Consensus       332 PE~l~-~~~~~~~~DiWSlG~il~elltG-----------~~PF~~~~~~~~~-----------~~~~~l~~i~~~~g~~  388 (530)
                      ||++. +..|+.++|||||||++|+|++|           .++|.+.+.....           ...+++..|+.++|.+
T Consensus       220 PE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p  299 (432)
T 3n9x_A          220 PELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTP  299 (432)
T ss_dssp             HHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccchHHHHHHHHHhcCCC
Confidence            99974 55699999999999999999984           4555444321111           1367899999999999


Q ss_pred             chhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          389 PRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       389 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +...+........       ...+....... .....   ......++++.+||.+||++||.+|||++|+|+||||+.-
T Consensus       300 ~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~---~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~  368 (432)
T 3n9x_A          300 TEDDLKNINKPEV-------IKYIKLFPHRK-PINLK---QKYPSISDDGINLLESMLKFNPNKRITIDQALDHPYLKDV  368 (432)
T ss_dssp             CHHHHHTCCCHHH-------HHHHHTSCCCC-CCCHH---HHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTCGGGTTT
T ss_pred             CHHHHHhccCHHH-------HHHHHhCCCCC-CCCHH---HHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcChhhhhc
Confidence            8776533221100       00000000000 00000   0113467889999999999999999999999999999976


Q ss_pred             CC
Q 045988          469 PR  470 (530)
Q Consensus       469 ~~  470 (530)
                      ..
T Consensus       369 ~~  370 (432)
T 3n9x_A          369 RK  370 (432)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=4.6e-49  Score=400.46  Aligned_cols=254  Identities=26%  Similarity=0.424  Sum_probs=212.6

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +..++|.+.+.||+|+||.||+|+++.+|+.||||++++.    ........+|..+|..+.     .||||++++++|.
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~-----~hp~iv~l~~~~~   88 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-----EHPFLTHMFCTFQ   88 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHT-----TCTTBCCEEEEEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcC-----CCCCCCcEEEEEE
Confidence            4568999999999999999999999999999999998764    234566788999998763     7899999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          +...+||||||| +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        89 ----~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~--------  153 (345)
T 1xjd_A           89 ----TKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSK-GIVYRDLKLDNILLDK--------  153 (345)
T ss_dssp             ----CSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEECT--------
T ss_pred             ----eCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCChhhEEECC--------
Confidence                457899999999 89999999753  3499999999999999999999997 9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (345)
T 1xjd_A          154 --------------------------------------------------------------------------------  153 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                  ++.+||+|||++....   ......+||+.|+|||++.+..|+.++||||||
T Consensus       154 ----------------------------~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  205 (345)
T 1xjd_A          154 ----------------------------DGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFG  205 (345)
T ss_dssp             ----------------------------TSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHH
T ss_pred             ----------------------------CCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHH
Confidence                                        4679999999997532   234567899999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+.+      .......+                                          ......+
T Consensus       206 ~il~ell~g~~Pf~~~~------~~~~~~~i------------------------------------------~~~~~~~  237 (345)
T 1xjd_A          206 VLLYEMLIGQSPFHGQD------EEELFHSI------------------------------------------RMDNPFY  237 (345)
T ss_dssp             HHHHHHHHSSCSSCCSS------HHHHHHHH------------------------------------------HHCCCCC
T ss_pred             HHHHHHhcCCCCCCCCC------HHHHHHHH------------------------------------------HhCCCCC
Confidence            99999999999996432      11111111                                          1112233


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHH-HHhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAA-QCLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~-elL~hp~f~~~  468 (530)
                      +...++++.+||.+||+.||.+||++. ++++||||+.-
T Consensus       238 p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~f~~~  276 (345)
T 1xjd_A          238 PRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREI  276 (345)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTC
T ss_pred             CcccCHHHHHHHHHHhcCCHhHcCCChHHHHcCccccCC
Confidence            445678999999999999999999998 99999999864

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=6.8e-49  Score=400.66  Aligned_cols=274  Identities=26%  Similarity=0.337  Sum_probs=211.7

Q ss_pred             CCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc------cchHHHHHHHHHHHHhhcCC
Q 045988           26 RRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ------HYTEAALDEIKILKQIAEGD   99 (530)
Q Consensus        26 ~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~------~~~~~~~~Ei~il~~l~~~~   99 (530)
                      ..|+++++..++.+..++|++.+.||+|+||+||+|+++.+++.||||++....      ...+.+.+|+.+++.+    
T Consensus         8 ~~g~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l----   83 (351)
T 3c0i_A            8 GGGGILDMADDDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML----   83 (351)
T ss_dssp             ------------CCHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHC----
T ss_pred             CCcccccccCCCCccccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhC----
Confidence            356677777777666789999999999999999999999999999999986432      1356788999999999    


Q ss_pred             CCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccC
Q 045988          100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--RGVPLHMVKEICFHILVGLDHLHRELSIIHTDL  176 (530)
Q Consensus       100 ~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDI  176 (530)
                        .||||++++++|..    ...+||||||| +++|.+++.....  ..+++..+..++.||+.||+|||++ ||+||||
T Consensus        84 --~hpnIv~~~~~~~~----~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~ivHrDl  156 (351)
T 3c0i_A           84 --KHPHIVELLETYSS----DGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN-NIIHRDV  156 (351)
T ss_dssp             --CCTTBCCEEEEEEE----TTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCC
T ss_pred             --CCCCCCcEEEEEEe----CCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC-CceeccC
Confidence              78899999999984    47899999999 7999888765432  2489999999999999999999997 9999999


Q ss_pred             CCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCC
Q 045988          177 KPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDA  256 (530)
Q Consensus       177 Kp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (530)
                      ||+|||++....                                                                    
T Consensus       157 kp~NIl~~~~~~--------------------------------------------------------------------  168 (351)
T 3c0i_A          157 KPHCVLLASKEN--------------------------------------------------------------------  168 (351)
T ss_dssp             SGGGEEECSSST--------------------------------------------------------------------
T ss_pred             ChHHeEEecCCC--------------------------------------------------------------------
Confidence            999999954210                                                                    


Q ss_pred             CCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCCh
Q 045988          257 EPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPE  333 (530)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE  333 (530)
                                                                   ...+||+|||++......   ....+||+.|+|||
T Consensus       169 ---------------------------------------------~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE  203 (351)
T 3c0i_A          169 ---------------------------------------------SAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPE  203 (351)
T ss_dssp             ---------------------------------------------TCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHH
T ss_pred             ---------------------------------------------CCcEEEecCcceeEecCCCeeecCCcCCcCccCHH
Confidence                                                         245999999999764332   34568999999999


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccch
Q 045988          334 VLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR  413 (530)
Q Consensus       334 ~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  413 (530)
                      ++.+..|+.++|||||||++|+|++|.+||.+.       .......+.......+..                      
T Consensus       204 ~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-------~~~~~~~i~~~~~~~~~~----------------------  254 (351)
T 3c0i_A          204 VVKREPYGKPVDVWGCGVILFILLSGCLPFYGT-------KERLFEGIIKGKYKMNPR----------------------  254 (351)
T ss_dssp             HHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS-------HHHHHHHHHHTCCCCCHH----------------------
T ss_pred             HHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc-------HHHHHHHHHcCCCCCCcc----------------------
Confidence            999999999999999999999999999999642       111222111100000000                      


Q ss_pred             hcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                                      .....+..+.+||.+||..||.+|||+.|+|+||||+..
T Consensus       255 ----------------~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~  293 (351)
T 3c0i_A          255 ----------------QWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKER  293 (351)
T ss_dssp             ----------------HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTH
T ss_pred             ----------------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcChhhcCC
Confidence                            012346789999999999999999999999999999864

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.4e-48  Score=389.10  Aligned_cols=260  Identities=27%  Similarity=0.427  Sum_probs=213.7

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      .+|+.  .++|++.++||+|+||+||+|.+..+++.||||++.... ...+.+.+|+.+++.+      .||||++++++
T Consensus        14 ~~~~~--~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~   85 (297)
T 3fxz_A           14 SVGDP--KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN------KNPNIVNYLDS   85 (297)
T ss_dssp             BSSCG--GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHC------CCTTBCCEEEE
T ss_pred             CcCCh--hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcC------CCCCCCeEeEE
Confidence            45553  478999999999999999999999999999999876543 3456678999999998      78899999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      |..    +..+|+||||| +++|.+++...   .+++..+..++.||+.||+|||++ ||+||||||+|||++.      
T Consensus        86 ~~~----~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~Dlkp~Nil~~~------  151 (297)
T 3fxz_A           86 YLV----GDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLGM------  151 (297)
T ss_dssp             EEE----TTEEEEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT------
T ss_pred             EEE----CCEEEEEEECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhC-CceeCCCCHHHEEECC------
Confidence            984    47899999999 99999998643   499999999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (297)
T 3fxz_A          152 --------------------------------------------------------------------------------  151 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                    ++.+||+|||++.....   .....+||+.|+|||++.+..|+.++||||
T Consensus       152 ------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws  201 (297)
T 3fxz_A          152 ------------------------------DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWS  201 (297)
T ss_dssp             ------------------------------TCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHH
T ss_pred             ------------------------------CCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHH
Confidence                                          45799999999865432   244568999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||....      ....+..+... +..                                      ..
T Consensus       202 lG~il~ell~g~~pf~~~~------~~~~~~~~~~~-~~~--------------------------------------~~  236 (297)
T 3fxz_A          202 LGIMAIEMIEGEPPYLNEN------PLRALYLIATN-GTP--------------------------------------EL  236 (297)
T ss_dssp             HHHHHHHHHHSSCTTTTSC------HHHHHHHHHHH-CSC--------------------------------------CC
T ss_pred             HHHHHHHHHhCCCCCCCCC------HHHHHHHHHhC-CCC--------------------------------------CC
Confidence            9999999999999996432      12222221111 000                                      01


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ..+...+..+.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       237 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~~~~~~~~  278 (297)
T 3fxz_A          237 QNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAKP  278 (297)
T ss_dssp             SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCC
T ss_pred             CCccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhcccCc
Confidence            123345778999999999999999999999999999986543

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.9e-49  Score=395.64  Aligned_cols=260  Identities=22%  Similarity=0.347  Sum_probs=213.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|.+.+.||+|+||+||+|.+..+++.||+|++.........+.+|+.+|+.+      .||||++++++|..    .
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~~~----~   73 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA------RHRNILHLHESFES----M   73 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHS------CCTTBCCEEEEEEE----T
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhC------CCCCCCeEeEEEec----C
Confidence            5799999999999999999999999999999999887666667788999999998      78899999999984    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+|+||||| +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++...            
T Consensus        74 ~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~-givH~Dlkp~NIl~~~~~------------  139 (321)
T 1tki_A           74 EELVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSH-NIGHFDIRPENIIYQTRR------------  139 (321)
T ss_dssp             TEEEEEECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSSS------------
T ss_pred             CEEEEEEEeCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CCCcCCCCHHHEEEccCC------------
Confidence            7899999999 88999998642 23599999999999999999999997 999999999999995410            


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (321)
T 1tki_A          140 --------------------------------------------------------------------------------  139 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                            +..+||+|||++.....  ......||+.|+|||++.+..++.++|||||||++|+|+
T Consensus       140 ----------------------~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll  197 (321)
T 1tki_A          140 ----------------------SSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLL  197 (321)
T ss_dssp             ----------------------CCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHH
Confidence                                  35699999999976432  234457899999999999988999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|.+||.+.+      ....+..+.......+..                                      .....+.+
T Consensus       198 ~g~~pf~~~~------~~~~~~~i~~~~~~~~~~--------------------------------------~~~~~s~~  233 (321)
T 1tki_A          198 SGINPFLAET------NQQIIENIMNAEYTFDEE--------------------------------------AFKEISIE  233 (321)
T ss_dssp             HSSCTTCCSS------HHHHHHHHHHTCCCCCHH--------------------------------------HHTTSCHH
T ss_pred             hCCCCCcCCC------HHHHHHHHHcCCCCCChh--------------------------------------hhccCCHH
Confidence            9999996433      222232222211111110                                      01235678


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      +.+||.+||..||.+|||+.|+|+||||+....
T Consensus       234 ~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~~  266 (321)
T 1tki_A          234 AMDFVDRLLVKERKSRMTASEALQHPWLKQKIE  266 (321)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHHSHHHHSCGG
T ss_pred             HHHHHHHHcCCChhHCcCHHHHhcChhhccCcc
Confidence            999999999999999999999999999986543

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.2e-49  Score=397.71  Aligned_cols=283  Identities=30%  Similarity=0.488  Sum_probs=218.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++|+++++||+|+||+||+|++..+++.||||++.....  ....+.+|+.+|+++      .||||+++++++.    .
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~----~   71 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDL------KHANIVTLHDIIH----T   71 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCC------CCTTBCCEEEEEE----C
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhc------CCCCCCeeeeEEe----e
Confidence            689999999999999999999999999999998875432  122445799999888      7889999999998    4


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ....+|||||++++|.+++.... ..+++..++.++.||+.||+|||++ ||+||||||+|||++.              
T Consensus        72 ~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dikp~NIl~~~--------------  135 (324)
T 3mtl_A           72 EKSLTLVFEYLDKDLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCHRQ-KVLHRDLKPQNLLINE--------------  135 (324)
T ss_dssp             SSCEEEEEECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEEESSCCGGGEEECT--------------
T ss_pred             CCEEEEEecccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCcCHHHEEECC--------------
Confidence            57899999999889999887543 3589999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (324)
T 3mtl_A          136 --------------------------------------------------------------------------------  135 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~e  355 (530)
                                            ++.+||+|||++.....   .....+||+.|+|||++.+ ..|+.++|||||||++|+
T Consensus       136 ----------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~  193 (324)
T 3mtl_A          136 ----------------------RGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYE  193 (324)
T ss_dssp             ----------------------TCCEEECSSSEEECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHH
Confidence                                  45799999999975432   2345578999999999987 568999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||.+.+      ..+.+..+...+|.++...+........+.. ..      ... ......    .......+
T Consensus       194 l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~-~~~~~~----~~~~~~~~  255 (324)
T 3mtl_A          194 MATGRPLFPGST------VEEQLHFIFRILGTPTEETWPGILSNEEFKT-YN------YPK-YRAEAL----LSHAPRLD  255 (324)
T ss_dssp             HHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGCHHHHH-TC------CCC-CCCCCH----HHHCTTSC
T ss_pred             HHhCCCCCCCCC------HHHHHHHHHHHhCCCChHhchhhhcchhhcc-cc------ccc-ccchhh----hhhcCCCC
Confidence            999999997654      6778889999999887765532211110000 00      000 000000    11123457


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      +++.+||.+||++||.+|||+.|+|+||||.....
T Consensus       256 ~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  290 (324)
T 3mtl_A          256 SDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGE  290 (324)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCS
T ss_pred             HHHHHHHHHHcCcCcccCCCHHHHhcChhhhhccc
Confidence            88999999999999999999999999999987543

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=3.5e-48  Score=394.30  Aligned_cols=260  Identities=25%  Similarity=0.351  Sum_probs=212.6

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|++++.||+|+||.||+|+++.+++.||||++++..    .....+.+|+.+++++.     .||||++++++|. 
T Consensus         7 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~hp~iv~l~~~~~-   80 (345)
T 3a8x_A            7 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS-----NHPFLVGLHSCFQ-   80 (345)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTT-----TCTTBCCEEEEEE-
T ss_pred             chhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcC-----CCCccCeEEEEEE-
Confidence            4578999999999999999999999999999999987643    22345778999998874     6899999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         ....+||||||+ +++|..++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.         
T Consensus        81 ---~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~---------  145 (345)
T 3a8x_A           81 ---TESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER-GIIYRDLKLDNVLLDS---------  145 (345)
T ss_dssp             ---CSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEECT---------
T ss_pred             ---eCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCHHHEEECC---------
Confidence               457999999999 88999998753  3599999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (345)
T 3a8x_A          146 --------------------------------------------------------------------------------  145 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                                 ++.+||+|||++...   .......+||+.|+|||++.+..|+.++|||||||
T Consensus       146 ---------------------------~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  198 (345)
T 3a8x_A          146 ---------------------------EGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGV  198 (345)
T ss_dssp             ---------------------------TSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHH
T ss_pred             ---------------------------CCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHH
Confidence                                       467999999999752   22345668999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCC--CChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          352 ICFELATGDVLFDPHSGDNYD--RDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~--~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ++|+|++|.+||.........  .....+.                                         ..+......
T Consensus       199 il~ell~g~~pf~~~~~~~~~~~~~~~~~~-----------------------------------------~~i~~~~~~  237 (345)
T 3a8x_A          199 LMFEMMAGRSPFDIVGSSDNPDQNTEDYLF-----------------------------------------QVILEKQIR  237 (345)
T ss_dssp             HHHHHHHSSCTTTTTTC-------CHHHHH-----------------------------------------HHHHHCCCC
T ss_pred             HHHHHHhCCCCcCCcccccccccccHHHHH-----------------------------------------HHHHcCCCC
Confidence            999999999999643211110  0111111                                         112222334


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCH------HHHhcCCCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTA------AQCLTHPWINVG  468 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta------~elL~hp~f~~~  468 (530)
                      ++...+.++.+||.+||+.||.+||++      .|+++||||+.-
T Consensus       238 ~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~  282 (345)
T 3a8x_A          238 IPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  282 (345)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTC
T ss_pred             CCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCC
Confidence            556678899999999999999999995      899999999864

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=8.4e-49  Score=399.57  Aligned_cols=252  Identities=23%  Similarity=0.355  Sum_probs=215.1

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|++++.||+|+||.||+|+++.+|+.||||++.+..    ...+.+.+|+++|+.+      .||||++++++|. 
T Consensus        39 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~-  111 (350)
T 1rdq_E           39 QLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV------NFPFLVKLEFSFK-  111 (350)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC------CCTTBCCEEEEEE-
T ss_pred             CHHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEE-
Confidence            3579999999999999999999999999999999987542    3346778899999888      7899999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         +...+||||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.         
T Consensus       112 ---~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~---------  176 (350)
T 1rdq_E          112 ---DNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSL-DLIYRDLKPENLLIDQ---------  176 (350)
T ss_dssp             ---CSSEEEEEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT---------
T ss_pred             ---cCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCccceEEECC---------
Confidence               457899999999 89999999754  3499999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (350)
T 1rdq_E          177 --------------------------------------------------------------------------------  176 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                                 ++.+||+|||++..........+||+.|+|||++.+..|+.++|||||||++|
T Consensus       177 ---------------------------~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  229 (350)
T 1rdq_E          177 ---------------------------QGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIY  229 (350)
T ss_dssp             ---------------------------TSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHH
T ss_pred             ---------------------------CCCEEEcccccceeccCCcccccCCccccCHHHhcCCCCCCcCCEecccHhHh
Confidence                                       46799999999987666666778999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||.+.+      .......                                          +......++...
T Consensus       230 ell~g~~Pf~~~~------~~~~~~~------------------------------------------i~~~~~~~p~~~  261 (350)
T 1rdq_E          230 EMAAGYPPFFADQ------PIQIYEK------------------------------------------IVSGKVRFPSHF  261 (350)
T ss_dssp             HHHHSSCSSCCSS------HHHHHHH------------------------------------------HHHCCCCCCTTC
T ss_pred             HHhhCCCCCCCCC------HHHHHHH------------------------------------------HHcCCCCCCCCC
Confidence            9999999996432      1111111                                          112223345566


Q ss_pred             HHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      ++++.+||.+||+.||.+||+     +.|+++||||+..
T Consensus       262 ~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~~  300 (350)
T 1rdq_E          262 SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT  300 (350)
T ss_dssp             CHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTC
T ss_pred             CHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcCcCCC
Confidence            789999999999999999998     9999999999864

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.4e-48  Score=399.86  Aligned_cols=268  Identities=23%  Similarity=0.313  Sum_probs=206.9

Q ss_pred             ccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           32 AVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        32 ~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      |..++.....++|+++++||+|+||+||+|++..+++.||||++.......+.+.+|+.+++.+      .||||+++++
T Consensus        10 p~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~   83 (361)
T 3uc3_A           10 PLDMPIMHDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSL------RHPNIVRFKE   83 (361)
T ss_dssp             -CCCCCCCCTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHC------CCTTBCCEEE
T ss_pred             CCCccCCCCCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhC------CCCCCCcEEE
Confidence            4444555567899999999999999999999999999999999987766677889999999999      7889999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      +|.    ....+|+||||| +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++...   
T Consensus        84 ~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~ql~~~L~~LH~~-~ivH~Dlkp~Nill~~~~---  153 (361)
T 3uc3_A           84 VIL----TPTHLAIIMEYASGGELYERICNA--GRFSEDEARFFFQQLLSGVSYCHSM-QICHRDLKLENTLLDGSP---  153 (361)
T ss_dssp             EEE----CSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCSCCCCGGGEEECSSS---
T ss_pred             EEe----eCCEEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEcCCC---
Confidence            998    457899999999 88999998643  3499999999999999999999997 999999999999995410   


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (361)
T 3uc3_A          154 --------------------------------------------------------------------------------  153 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc--ccccCCCCCCCCccCChhhcCCCCCCc-chhH
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT--YKQFTNDIQTRQYRCPEVLLGSKYSTP-ADLW  347 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~--~~~~~~~~gt~~y~aPE~l~~~~~~~~-~DiW  347 (530)
                                                     ...+||+|||++...  .......+||+.|+|||++.+..+..+ +|||
T Consensus       154 -------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diw  202 (361)
T 3uc3_A          154 -------------------------------APRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVW  202 (361)
T ss_dssp             -------------------------------SCCEEECCCCCC---------------CTTSCHHHHHCSSCCHHHHHHH
T ss_pred             -------------------------------CceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeee
Confidence                                           235999999999642  233455689999999999998887655 8999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|.+||.+.....     .....+..+.....                                     .
T Consensus       203 slG~il~ell~g~~Pf~~~~~~~-----~~~~~~~~~~~~~~-------------------------------------~  240 (361)
T 3uc3_A          203 SCGVTLYVMLVGAYPFEDPEEPR-----DYRKTIQRILSVKY-------------------------------------S  240 (361)
T ss_dssp             HHHHHHHHHHHSSCSCC----CC-----CHHHHHHHHHTTCC-------------------------------------C
T ss_pred             hhHHHHHHHHhCCCCCCCCccHH-----HHHHHHHHHhcCCC-------------------------------------C
Confidence            99999999999999997543211     11111111111000                                     0


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +......++.+.+||.+||+.||.+|||+.|+|+||||...
T Consensus       241 ~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  281 (361)
T 3uc3_A          241 IPDDIRISPECCHLISRIFVADPATRISIPEIKTHSWFLKN  281 (361)
T ss_dssp             CCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSHHHHTT
T ss_pred             CCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhCcchhcC
Confidence            01112356889999999999999999999999999999754

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.4e-48  Score=398.23  Aligned_cols=254  Identities=21%  Similarity=0.307  Sum_probs=211.6

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +..++|++++.||+|+||+||+|+++.+++.||||++++..    ...+.+.+|..+|..+.     .||+|++++++|.
T Consensus        17 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~hp~iv~l~~~~~   91 (353)
T 2i0e_A           17 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPG-----KPPFLTQLHSCFQ   91 (353)
T ss_dssp             --CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTT-----CCTTBCCEEEEEE
T ss_pred             CchHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcC-----CCCEEeeEEEEEE
Confidence            34689999999999999999999999999999999987642    33456778888887663     6899999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          ....+||||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        92 ----~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NIll~~--------  156 (353)
T 2i0e_A           92 ----TMDRLYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSK-GIIYRDLKLDNVMLDS--------  156 (353)
T ss_dssp             ----CSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEECT--------
T ss_pred             ----cCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEeccCCHHHEEEcC--------
Confidence                457999999999 88999998754  3499999999999999999999997 9999999999999955        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (353)
T 2i0e_A          157 --------------------------------------------------------------------------------  156 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                  ++.+||+|||++...   .......+||+.|+|||++.+..|+.++||||||
T Consensus       157 ----------------------------~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  208 (353)
T 2i0e_A          157 ----------------------------EGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFG  208 (353)
T ss_dssp             ----------------------------TSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHH
T ss_pred             ----------------------------CCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchH
Confidence                                        467999999999753   2234567899999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+.+      .......                                          +....+.+
T Consensus       209 ~il~ell~G~~Pf~~~~------~~~~~~~------------------------------------------i~~~~~~~  240 (353)
T 2i0e_A          209 VLLYEMLAGQAPFEGED------EDELFQS------------------------------------------IMEHNVAY  240 (353)
T ss_dssp             HHHHHHHHSSCSSCCSS------HHHHHHH------------------------------------------HHHCCCCC
T ss_pred             HHHHHHHcCCCCCCCCC------HHHHHHH------------------------------------------HHhCCCCC
Confidence            99999999999996432      1111111                                          12223344


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      +...++++.+||.+||+.||.+||     ++.++++||||+.-
T Consensus       241 p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~~  283 (353)
T 2i0e_A          241 PKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI  283 (353)
T ss_dssp             CTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTTC
T ss_pred             CCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCccccCC
Confidence            556778999999999999999999     47999999999864

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=2.4e-48  Score=398.93  Aligned_cols=285  Identities=29%  Similarity=0.441  Sum_probs=210.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++++.||+|+||.||+|.+..+|+.||||++....   .....+.+|+.+|+.+      .||||++++++|....
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~~~~~  101 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM------KHENVIGLLDVFTPAR  101 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHC------CCTTBCCCSEEECSCS
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhC------CCCCCCcEEEEEecCC
Confidence            589999999999999999999999999999999986532   2345678999999999      7888999999987532


Q ss_pred             --CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          118 --PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       118 --~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        .....+|+|||+++++|.+++..   ..+++..++.++.||+.||+|||++ ||+||||||+|||++.          
T Consensus       102 ~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~-givH~Dlkp~NIll~~----------  167 (367)
T 2fst_X          102 SLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAVNE----------  167 (367)
T ss_dssp             SGGGCCCCEEEEECCCEECC--------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT----------
T ss_pred             ccccCCeEEEEecccCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHhhEEECC----------
Confidence              12356899999999999998863   4599999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (367)
T 2fst_X          168 --------------------------------------------------------------------------------  167 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~  354 (530)
                                                ++.+||+|||+++.........+||++|+|||++.+ ..|+.++|||||||++|
T Consensus       168 --------------------------~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  221 (367)
T 2fst_X          168 --------------------------DCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA  221 (367)
T ss_dssp             --------------------------TCCEEECC---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHH
T ss_pred             --------------------------CCCEEEeeccccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHH
Confidence                                      457999999999876666677899999999999987 67999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--cccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|++|.+||.+..      ..+++..+...+|.++...+......  ..+.......      ....+.       ....
T Consensus       222 ell~g~~pf~~~~------~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-------~~~~  282 (367)
T 2fst_X          222 ELLTGRTLFPGTD------HIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM------PKMNFA-------NVFI  282 (367)
T ss_dssp             HHHHSSCSCCCSS------HHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCC------CCCCHH-------HHTT
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCC------CCCCHH-------HHCC
Confidence            9999999997654      67889999999999887765432211  0000000000      000000       0112


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ..++.+.+||.+||++||.+|||+.|+|+||||+....
T Consensus       283 ~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~  320 (367)
T 2fst_X          283 GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  320 (367)
T ss_dssp             TCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             CCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhccC
Confidence            45678999999999999999999999999999997644

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.5e-48  Score=388.18  Aligned_cols=259  Identities=27%  Similarity=0.402  Sum_probs=211.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-------chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .++|.+.+.||+|+||.||+|++..+++.||+|+++....       ..+.+.+|+.+|+++      .||||++++++|
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~   83 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI------QHPNVITLHEVY   83 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHC------CCTTBCCEEEEE
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhC------CCCCCCcEEEEE
Confidence            4689999999999999999999999999999999876432       356788999999999      788999999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      .    ....+|+||||+ +++|.+++..  ...+++..+..++.||+.||.|||++ ||+||||||+|||++.....   
T Consensus        84 ~----~~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dlkp~NIll~~~~~~---  153 (326)
T 2y0a_A           84 E----NKTDVILILELVAGGELFDFLAE--KESLTEEEATEFLKQILNGVYYLHSL-QIAHFDLKPENIMLLDRNVP---  153 (326)
T ss_dssp             E----CSSEEEEEEECCCSCBHHHHHTT--SSCCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESCSSSS---
T ss_pred             E----eCCEEEEEEEcCCCCCHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHC-CeEcCCCCHHHEEEecCCCC---
Confidence            8    457899999999 8899999863  34599999999999999999999997 99999999999999552100   


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (326)
T 2y0a_A          154 --------------------------------------------------------------------------------  153 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                   ...+||+|||++....  ......+||+.|+|||++.+..++.++||||||
T Consensus       154 -----------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  204 (326)
T 2y0a_A          154 -----------------------------KPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIG  204 (326)
T ss_dssp             -----------------------------SCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHH
T ss_pred             -----------------------------CCCEEEEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHH
Confidence                                         2369999999997643  334566899999999999998999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+..      ....+..+.......+..                                      .
T Consensus       205 ~il~~ll~g~~pf~~~~------~~~~~~~~~~~~~~~~~~--------------------------------------~  240 (326)
T 2y0a_A          205 VITYILLSGASPFLGDT------KQETLANVSAVNYEFEDE--------------------------------------Y  240 (326)
T ss_dssp             HHHHHHHHSCCSSCCSS------HHHHHHHHHHTCCCCCHH--------------------------------------H
T ss_pred             HHHHHHHHCcCCCCCCC------HHHHHHHHHhcCCCcCcc--------------------------------------c
Confidence            99999999999996432      222222222211111110                                      1


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ....+..+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       241 ~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  278 (326)
T 2y0a_A          241 FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPK  278 (326)
T ss_dssp             HTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTSCC
T ss_pred             cccCCHHHHHHHHHHccCChhhCCCHHHHhcCCCccCC
Confidence            12346789999999999999999999999999999854

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.3e-48  Score=399.43  Aligned_cols=283  Identities=26%  Similarity=0.441  Sum_probs=223.9

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC--
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG--  117 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~--  117 (530)
                      ..++|++.++||+|+||+||+|++..+|+.||||++.....   ...+|+.+|+.+      .||||++++++|...+  
T Consensus         5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~---~~~~E~~il~~l------~hpnIv~l~~~~~~~~~~   75 (383)
T 3eb0_A            5 SSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR---YKNRELDIMKVL------DHVNIIKLVDYFYTTGDE   75 (383)
T ss_dssp             -CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT---SCCHHHHHHTTC------CCTTBCCEEEEEEEC---
T ss_pred             ccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc---hHHHHHHHHHHc------CCCCccchhheeeecCcc
Confidence            46799999999999999999999999999999998876533   234799999988      7889999999996542  


Q ss_pred             --------------------------------CCCcEEEEEEeccCcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHH
Q 045988          118 --------------------------------PNGQHVCMVFEYLGENLLTLIKYA--DYRGVPLHMVKEICFHILVGLD  163 (530)
Q Consensus       118 --------------------------------~~~~~~~lVmE~~~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~  163 (530)
                                                      ....++++||||++++|.+++...  ....+++..++.++.||+.||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~  155 (383)
T 3eb0_A           76 EPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVG  155 (383)
T ss_dssp             ----------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence                                            234569999999988988887642  3355999999999999999999


Q ss_pred             HHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCC
Q 045988          164 HLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESD  243 (530)
Q Consensus       164 ~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (530)
                      |||++ ||+||||||+|||++..                                                         
T Consensus       156 ~LH~~-gi~H~Dikp~Nil~~~~---------------------------------------------------------  177 (383)
T 3eb0_A          156 FIHSL-GICHRDIKPQNLLVNSK---------------------------------------------------------  177 (383)
T ss_dssp             HHHTT-TEECSCCCGGGEEEETT---------------------------------------------------------
T ss_pred             HHHHC-cCccCccCHHHEEEcCC---------------------------------------------------------
Confidence            99997 99999999999999531                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccC
Q 045988          244 SKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFT  321 (530)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~  321 (530)
                                                                                ++.+||+|||+|....  ....
T Consensus       178 ----------------------------------------------------------~~~~kl~Dfg~a~~~~~~~~~~  199 (383)
T 3eb0_A          178 ----------------------------------------------------------DNTLKLCDFGSAKKLIPSEPSV  199 (383)
T ss_dssp             ----------------------------------------------------------TTEEEECCCTTCEECCTTSCCC
T ss_pred             ----------------------------------------------------------CCcEEEEECCCCcccCCCCCCc
Confidence                                                                      4579999999997542  3345


Q ss_pred             CCCCCCCccCChhhcCCC-CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc-
Q 045988          322 NDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS-  399 (530)
Q Consensus       322 ~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-  399 (530)
                      ...||+.|+|||++.+.. |+.++|||||||++|+|++|.+||.+.+      ..+++..++..+|.++.+.+...... 
T Consensus       200 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~~i~~~~g~p~~~~~~~~~~~~  273 (383)
T 3eb0_A          200 AYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGET------SIDQLVRIIQIMGTPTKEQMIRMNPHY  273 (383)
T ss_dssp             CCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHHHCTTC
T ss_pred             CcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHHHhCccc
Confidence            668899999999998754 8999999999999999999999997654      67889999999998877654322110 


Q ss_pred             -cccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          400 -RDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       400 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                       ...|...               ........++...++++.+||.+||++||.+|||+.|+|+||||+..
T Consensus       274 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  328 (383)
T 3eb0_A          274 TEVRFPTL---------------KAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHL  328 (383)
T ss_dssp             --CCCCCC---------------CCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHH
T ss_pred             ccccCCcc---------------CcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHH
Confidence             0000000               00001112345567889999999999999999999999999999753

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2.6e-48  Score=397.89  Aligned_cols=272  Identities=26%  Similarity=0.338  Sum_probs=212.6

Q ss_pred             CCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCC
Q 045988           26 RRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        26 ~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      .+|..+....+..+ .++|++.+.||+|+||.||+|.++.+++.||+|++....   ...+.+.+|+.++++|      .
T Consensus        14 ~~~~~~~~~~~~~~-~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l------~   86 (362)
T 2bdw_A           14 GRGSEFMMNASTKF-SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL------Q   86 (362)
T ss_dssp             ----------CCHH-HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHC------C
T ss_pred             cCCceEeecCCCCc-ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhC------C
Confidence            34444555556666 578999999999999999999999999999999987543   2345678999999999      7


Q ss_pred             CcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcE
Q 045988          103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENV  181 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NI  181 (530)
                      ||||+++++++.    .....|+||||| +++|.+++..  ...+++..+..++.||+.||+|||++ ||+||||||+||
T Consensus        87 hpnIv~~~~~~~----~~~~~~lv~e~~~gg~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~Dlkp~NI  159 (362)
T 2bdw_A           87 HPNIVRLHDSIQ----EESFHYLVFDLVTGGELFEDIVA--REFYSEADASHCIQQILESIAYCHSN-GIVHRNLKPENL  159 (362)
T ss_dssp             CTTBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHTT--CSCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGE
T ss_pred             CCCCCeEEEEEE----eCCEEEEEEecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCchHHE
Confidence            889999999998    457899999999 8899998864  34589999999999999999999997 999999999999


Q ss_pred             EEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 045988          182 LLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGD  261 (530)
Q Consensus       182 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (530)
                      |++....                                                                         
T Consensus       160 ll~~~~~-------------------------------------------------------------------------  166 (362)
T 2bdw_A          160 LLASKAK-------------------------------------------------------------------------  166 (362)
T ss_dssp             EESCSST-------------------------------------------------------------------------
T ss_pred             EEecCCC-------------------------------------------------------------------------
Confidence            9954210                                                                         


Q ss_pred             CcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCC
Q 045988          262 SVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                              ...+||+|||++......  ....+||+.|+|||++.+..
T Consensus       167 ----------------------------------------~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~  206 (362)
T 2bdw_A          167 ----------------------------------------GAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDP  206 (362)
T ss_dssp             ----------------------------------------TCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCC
T ss_pred             ----------------------------------------CCCEEEeecCcceEecCCcccccCCCCccccCHHHHccCC
Confidence                                                    245999999999764432  34568999999999999989


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      |+.++|||||||++|+|++|.+||.+..      .......+....-..|.                             
T Consensus       207 ~~~~~DiwslG~il~~ll~g~~Pf~~~~------~~~~~~~i~~~~~~~~~-----------------------------  251 (362)
T 2bdw_A          207 YSKPVDIWACGVILYILLVGYPPFWDED------QHRLYAQIKAGAYDYPS-----------------------------  251 (362)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCCT-----------------------------
T ss_pred             CCchhhHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhCCCCCCc-----------------------------
Confidence            9999999999999999999999996432      11222222111000000                             


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                               ......++++.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       252 ---------~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~  291 (362)
T 2bdw_A          252 ---------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNR  291 (362)
T ss_dssp             ---------TGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSHHHHTH
T ss_pred             ---------ccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcccCCC
Confidence                     0112456789999999999999999999999999999753

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=7.8e-48  Score=404.17  Aligned_cols=258  Identities=26%  Similarity=0.347  Sum_probs=209.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.++||+|+||+||+|.++.+|+.||+|++....   .....+.+|+.+|+.|      .||||++++++|.   
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~l~~~~~---   80 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLL------KHPNIVRLHDSIS---   80 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHC------CBTTBCCEEEEEE---
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhC------CCcCCCeEEEEEE---
Confidence            468999999999999999999999999999999987643   2345678999999999      7889999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .....|+||||| +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++....        
T Consensus        81 -~~~~~~lv~E~~~gg~L~~~i~~~--~~~~e~~~~~i~~qil~aL~~lH~~-givHrDlKp~NIll~~~~~--------  148 (444)
T 3soa_A           81 -EEGHHYLIFDLVTGGELFEDIVAR--EYYSEADASHCIQQILEAVLHCHQM-GVVHRNLKPENLLLASKLK--------  148 (444)
T ss_dssp             -CSSEEEEEECCCBCCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSSTTEEESBSST--------
T ss_pred             -ECCEEEEEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEeccCC--------
Confidence             557999999999 88999998753  4499999999999999999999997 9999999999999954110        


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (444)
T 3soa_A          149 --------------------------------------------------------------------------------  148 (444)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                               ...+||+|||++......   ....+||+.|+|||++.+..|+.++|||||||++
T Consensus       149 -------------------------~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvil  203 (444)
T 3soa_A          149 -------------------------GAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVIL  203 (444)
T ss_dssp             -------------------------TCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHH
T ss_pred             -------------------------CCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHH
Confidence                                     356999999999764332   3456899999999999998999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||.+..      .......+.......+.                                      .....
T Consensus       204 yell~G~~Pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------------~~~~~  239 (444)
T 3soa_A          204 YILLVGYPPFWDED------QHRLYQQIKAGAYDFPS--------------------------------------PEWDT  239 (444)
T ss_dssp             HHHHHSSCSCCCSS------HHHHHHHHHHTCCCCCT--------------------------------------TTTTT
T ss_pred             HHHHhCCCCCCCcc------HHHHHHHHHhCCCCCCc--------------------------------------ccccc
Confidence            99999999996432      22222222111100000                                      11134


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .++++.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       240 ~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~~~~~  274 (444)
T 3soa_A          240 VTPEAKDLINKMLTINPSKRITAAEALKHPWISHR  274 (444)
T ss_dssp             SCHHHHHHHHHHSCSSTTTSCCHHHHHHSCTTHHH
T ss_pred             CCHHHHHHHHHHcCCChhHCCCHHHHhcCccccCC
Confidence            57889999999999999999999999999999753

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=5.9e-47  Score=389.27  Aligned_cols=308  Identities=26%  Similarity=0.408  Sum_probs=233.9

Q ss_pred             ccCCCCCCCCCccccccCcEe--eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHH
Q 045988           19 DEGTEDYRRGGYHAVRMGDTF--KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILK   93 (530)
Q Consensus        19 ~e~~~~~~~~~~~~~~~g~~~--~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~   93 (530)
                      .++-.....+||++..++...  -.++|.+.+.||+|+||+||+|.+..+|+.||||++....   .....+.+|+.+++
T Consensus        17 ~~~m~~~~~~g~~~~~~~~~~~~l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~   96 (371)
T 4exu_A           17 RGSMSLIRKKGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLK   96 (371)
T ss_dssp             ----CCSSCTTEEEEEETTEEEEEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             cCceeeeccccceeeeeccceecccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHH
Confidence            455556677888877666542  2579999999999999999999999999999999987642   23466789999999


Q ss_pred             HhhcCCCCCCcceeEecceeeecCCCC--cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCc
Q 045988           94 QIAEGDPDDKKCVVKLLDHFKHSGPNG--QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSI  171 (530)
Q Consensus        94 ~l~~~~~~~h~~Iv~~~~~~~~~~~~~--~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gI  171 (530)
                      .+      .||||++++++|.......  ...|+||||++++|.+++.    ..+++..+..++.||+.||+|||++ ||
T Consensus        97 ~l------~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~-~i  165 (371)
T 4exu_A           97 HM------QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMG----MEFSEEKIQYLVYQMLKGLKYIHSA-GV  165 (371)
T ss_dssp             HC------CCTTBCCCSEEECSCSSSTTCCCCEEEEECCCEEHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             hc------CCCCchhhhhheeccCCcccceeEEEEEccccccHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            99      7888999999998543111  2349999999989888763    3499999999999999999999997 99


Q ss_pred             eeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCC
Q 045988          172 IHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDH  251 (530)
Q Consensus       172 vHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (530)
                      +||||||+|||++.                                                                  
T Consensus       166 vH~Dikp~NIll~~------------------------------------------------------------------  179 (371)
T 4exu_A          166 VHRDLKPGNLAVNE------------------------------------------------------------------  179 (371)
T ss_dssp             CCSCCCGGGEEECT------------------------------------------------------------------
T ss_pred             cCCCcCHHHeEECC------------------------------------------------------------------
Confidence            99999999999954                                                                  


Q ss_pred             CCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccC
Q 045988          252 TSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRC  331 (530)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~a  331 (530)
                                                                        ++.+||+|||++..........+||+.|+|
T Consensus       180 --------------------------------------------------~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~a  209 (371)
T 4exu_A          180 --------------------------------------------------DCELKILDFGLARHADAEMTGYVVTRWYRA  209 (371)
T ss_dssp             --------------------------------------------------TCCEEECSTTCC--------CTTCCCTTSC
T ss_pred             --------------------------------------------------CCCEEEEecCcccccccCcCCcccCccccC
Confidence                                                              467999999999877766777889999999


Q ss_pred             ChhhcC-CCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccc
Q 045988          332 PEVLLG-SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR  410 (530)
Q Consensus       332 PE~l~~-~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  410 (530)
                      ||++.+ ..++.++|||||||++|+|++|.+||.+..      ..+.+..+....|.++..+..........       .
T Consensus       210 PE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~  276 (371)
T 4exu_A          210 PEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD------YLDQLTQILKVTGVPGTEFVQKLNDKAAK-------S  276 (371)
T ss_dssp             HHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCHHHHTTCSCHHHH-------H
T ss_pred             HHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCcHHHHHHhhhhhhh-------h
Confidence            999987 679999999999999999999999997544      67788889999998887765432211000       0


Q ss_pred             cchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          411 HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ........+...    ........++.+.+||.+||++||.+|||+.|+|+||||+....
T Consensus       277 ~~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  332 (371)
T 4exu_A          277 YIQSLPQTPRKD----FTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRD  332 (371)
T ss_dssp             HHHHSCCCCCCC----HHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCC
T ss_pred             hhhccCCCcchh----HHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCcccccCCC
Confidence            000000000000    00112345788999999999999999999999999999986543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=5.7e-48  Score=393.57  Aligned_cols=291  Identities=27%  Similarity=0.400  Sum_probs=224.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|+++++||+|+||+||+|++..+|+.||||++....   .....+.+|+.+|+.+      .||||+++++++....
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~   89 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL------KHENVVNLIEICRTKA   89 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHC------CCTTBCCEEEEEEEC-
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhc------cCCCcccHhheeeccc
Confidence            379999999999999999999999999999999876543   2345678999999999      7888999999998642


Q ss_pred             C----CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          118 P----NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       118 ~----~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .    ....+||||||++++|...+.... ..+++..++.++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        90 ~~~~~~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIl~~~--------  159 (351)
T 3mi9_A           90 SPYNRCKGSIYLVFDFCEHDLAGLLSNVL-VKFTLSEIKRVMQMLLNGLYYIHRN-KILHRDMKAANVLITR--------  159 (351)
T ss_dssp             -------CEEEEEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT--------
T ss_pred             cccccCCceEEEEEeccCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCHHHEEEcC--------
Confidence            1    146799999999889988886433 4599999999999999999999997 9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (351)
T 3mi9_A          160 --------------------------------------------------------------------------------  159 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-------cccCCCCCCCCccCChhhcC-CCCCCcch
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-------KQFTNDIQTRQYRCPEVLLG-SKYSTPAD  345 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-------~~~~~~~gt~~y~aPE~l~~-~~~~~~~D  345 (530)
                                                  ++.+||+|||++....       ......+||+.|+|||++.+ ..|+.++|
T Consensus       160 ----------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~D  211 (351)
T 3mi9_A          160 ----------------------------DGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPID  211 (351)
T ss_dssp             ----------------------------TSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHH
T ss_pred             ----------------------------CCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhH
Confidence                                        4579999999996532       22345678999999999986 45899999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|+|++|.+||.+..      ....+..+....+..+...+....... .+.........    .......+.
T Consensus       212 iwslG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~  280 (351)
T 3mi9_A          212 LWGAGCIMAEMWTRSPIMQGNT------EQHQLALISQLCGSITPEVWPNVDNYE-LYEKLELVKGQ----KRKVKDRLK  280 (351)
T ss_dssp             HHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGCG-GGTSSCCCSSC----CCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCChhhccccccch-hhccccccccc----ccCHHHHhh
Confidence            9999999999999999997644      677888888899988776543221111 11110000000    000000000


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      .     ...++.+.+||.+||++||.+|||++|+|+||||+..+..
T Consensus       281 ~-----~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  321 (351)
T 3mi9_A          281 A-----YVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMP  321 (351)
T ss_dssp             H-----HHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSSCC
T ss_pred             h-----ccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCCCc
Confidence            0     1125678999999999999999999999999999876543

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.3e-47  Score=394.89  Aligned_cols=260  Identities=22%  Similarity=0.368  Sum_probs=215.0

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .+..+..++|++++.||+|+||.||+|++..+++.||||++.+..    .....+.+|+++|+.+      .|||||+++
T Consensus         8 ~~~~v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l------~hp~Iv~l~   81 (384)
T 4fr4_A            8 ENEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGL------EHPFLVNLW   81 (384)
T ss_dssp             CCCCCCGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC------CCTTBCCEE
T ss_pred             CCCCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhC------CCCCCCcEE
Confidence            344555789999999999999999999999999999999987542    3346788999999998      789999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ++|.    +...+|+||||+ +++|..++..  ...+++..++.|+.||+.||.|||++ |||||||||+||||+.    
T Consensus        82 ~~~~----~~~~~~lv~e~~~gg~L~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NIll~~----  150 (384)
T 4fr4_A           82 YSFQ----DEEDMFMVVDLLLGGDLRYHLQQ--NVHFKEETVKLFICELVMALDYLQNQ-RIIHRDMKPDNILLDE----  150 (384)
T ss_dssp             EEEE----CSSEEEEEECCCTTEEHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT----
T ss_pred             EEEE----eCCEEEEEEecCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCcHHHeEECC----
Confidence            9998    457899999999 9999999874  34599999999999999999999997 9999999999999955    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (384)
T 4fr4_A          151 --------------------------------------------------------------------------------  150 (384)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcC---CCCCCcc
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLG---SKYSTPA  344 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~---~~~~~~~  344 (530)
                                                      ++.++|+|||++....  ......+||+.|+|||++.+   ..|+.++
T Consensus       151 --------------------------------~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~  198 (384)
T 4fr4_A          151 --------------------------------HGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAV  198 (384)
T ss_dssp             --------------------------------TSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTH
T ss_pred             --------------------------------CCCEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCCCCCccc
Confidence                                            5679999999997643  33466789999999999974   4589999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      |||||||++|+|++|.+||...+...    ...+..                                         .+.
T Consensus       199 DiwSlG~il~elltG~~Pf~~~~~~~----~~~~~~-----------------------------------------~~~  233 (384)
T 4fr4_A          199 DWWSLGVTAYELLRGRRPYHIRSSTS----SKEIVH-----------------------------------------TFE  233 (384)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCCCTTSC----HHHHHH-----------------------------------------HHH
T ss_pred             eeechHHHHHHHHhCCCCCCCCCCcc----HHHHHH-----------------------------------------HHh
Confidence            99999999999999999996543211    111111                                         111


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcC-HHHHhcCCCCCCC
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPT-AAQCLTHPWINVG  468 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpt-a~elL~hp~f~~~  468 (530)
                      .....++...+..+.+||.+||+.||.+||+ +.++++||||+.-
T Consensus       234 ~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~hp~f~~~  278 (384)
T 4fr4_A          234 TTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFPYMNDI  278 (384)
T ss_dssp             HCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHTSGGGTTC
T ss_pred             hcccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHcChhhhcC
Confidence            1122345566789999999999999999998 9999999999864

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=9.9e-48  Score=399.08  Aligned_cols=255  Identities=24%  Similarity=0.366  Sum_probs=209.9

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|+++++||+|+||+||+|+++.+++.||+|++++..    .....+.+|+.+++.+      +|||||+++++|. 
T Consensus        67 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l------~hp~Iv~l~~~~~-  139 (410)
T 3v8s_A           67 KAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA------NSPWVVQLFYAFQ-  139 (410)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHC------CCTTBCCEEEEEE-
T ss_pred             CccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhC------CCCCCCeEEEEEE-
Confidence            3578999999999999999999999999999999987632    2344578899999998      7899999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         +...+||||||| +++|.+++..   ..+++..++.++.||+.||+|||++ |||||||||+||||+.         
T Consensus       140 ---~~~~~~lV~E~~~gg~L~~~l~~---~~~~e~~~~~~~~qi~~aL~~LH~~-givHrDLKp~NILl~~---------  203 (410)
T 3v8s_A          140 ---DDRYLYMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSM-GFIHRDVKPDNMLLDK---------  203 (410)
T ss_dssp             ---CSSEEEEEECCCTTEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT---------
T ss_pred             ---ECCEEEEEEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeeECC---------
Confidence               557999999999 9999998864   3499999999999999999999997 9999999999999955         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (410)
T 3v8s_A          204 --------------------------------------------------------------------------------  203 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCC----CCCcchh
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSK----YSTPADL  346 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~----~~~~~Di  346 (530)
                                                 ++.+||+|||+|......    ....+||+.|+|||++.+..    |+.++||
T Consensus       204 ---------------------------~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~Di  256 (410)
T 3v8s_A          204 ---------------------------SGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDW  256 (410)
T ss_dssp             ---------------------------TSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHH
T ss_pred             ---------------------------CCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceE
Confidence                                       567999999999754332    34678999999999998765    8899999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|.+||.+.+      .......+....                                      ...
T Consensus       257 wSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~~--------------------------------------~~~  292 (410)
T 3v8s_A          257 WSVGVFLYEMLVGDTPFYADS------LVGTYSKIMNHK--------------------------------------NSL  292 (410)
T ss_dssp             HHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTHH--------------------------------------HHC
T ss_pred             ecchHHHHHHHhCCCCCCCCC------hhhHHHHHHhcc--------------------------------------ccc
Confidence            999999999999999996433      222222221110                                      000


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCC--CcCHHHHhcCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEK--RPTAAQCLTHPWINVG  468 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~--Rpta~elL~hp~f~~~  468 (530)
                      .+......++++++||.+||+.+|.+  |++++||++||||+..
T Consensus       293 ~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~~~  336 (410)
T 3v8s_A          293 TFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKND  336 (410)
T ss_dssp             CCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGCCS
T ss_pred             cCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcCccccCC
Confidence            01112246789999999999999988  9999999999999864

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=1e-47  Score=398.66  Aligned_cols=274  Identities=24%  Similarity=0.326  Sum_probs=208.5

Q ss_pred             cccccCcEeeCCCEEEE-EEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           31 HAVRMGDTFKNGRYVVQ-SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        31 ~~~~~g~~~~~~~y~i~-~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      .++..|..+  ++|.+. +.||+|+||+||+|++..+++.||||++..    .....+|+.++.++.     .||||+++
T Consensus        52 ~~~~~~~~~--~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~----~~~~~~E~~~~~~~~-----~hp~iv~l  120 (400)
T 1nxk_A           52 LQIKKNAII--DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRAS-----QCPHIVRI  120 (400)
T ss_dssp             CCCBCSCGG--GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHT-----TSTTBCCE
T ss_pred             cccCCCccc--ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc----chhHHHHHHHHHHhc-----CCCCcceE
Confidence            344555555  578887 789999999999999999999999999864    345778999887664     78999999


Q ss_pred             cceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccC
Q 045988          110 LDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID  188 (530)
Q Consensus       110 ~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~  188 (530)
                      +++|.....+..++||||||| +++|.+++.......+++..++.|+.||+.||+|||++ |||||||||+|||++... 
T Consensus       121 ~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~Nill~~~~-  198 (400)
T 1nxk_A          121 VDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSKR-  198 (400)
T ss_dssp             EEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSSS-
T ss_pred             eEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCcCcceEEEecCC-
Confidence            999986433467899999999 88999999765445699999999999999999999997 999999999999995410 


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                                                                                                      
T Consensus       199 --------------------------------------------------------------------------------  198 (400)
T 1nxk_A          199 --------------------------------------------------------------------------------  198 (400)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                      .++.+||+|||++.....  .....+||+.|+|||++.+..|+.++||
T Consensus       199 --------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  246 (400)
T 1nxk_A          199 --------------------------------PNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDM  246 (400)
T ss_dssp             --------------------------------TTCCEEECCCTTCEECC-----------CTTCCGGGSCCCCSSSHHHH
T ss_pred             --------------------------------CCccEEEEecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccH
Confidence                                            035699999999976432  2456689999999999999899999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|.+||..........  .....+..  +...                              .      
T Consensus       247 wslG~il~ell~g~~pf~~~~~~~~~~--~~~~~i~~--~~~~------------------------------~------  286 (400)
T 1nxk_A          247 WSLGVIMYILLCGYPPFYSNHGLAISP--GMKTRIRM--GQYE------------------------------F------  286 (400)
T ss_dssp             HHHHHHHHHHHHSSCSCCCCTTCSSCC--SHHHHHHH--TCCC------------------------------C------
T ss_pred             HHHHHHHHHHHhCCCCCCCCccccccH--HHHHHHHc--Cccc------------------------------C------
Confidence            999999999999999997554322111  11111110  0000                              0      


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .......++.++.+||.+||+.||.+|||+.|+|+||||....
T Consensus       287 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~~  329 (400)
T 1nxk_A          287 PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST  329 (400)
T ss_dssp             CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHTTT
T ss_pred             CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccCCC
Confidence            0001134578899999999999999999999999999998654

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=2.4e-47  Score=398.55  Aligned_cols=284  Identities=25%  Similarity=0.413  Sum_probs=223.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC--
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP--  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~--  118 (530)
                      ..+|++.+.||+|+||.||+|++..+|+.||||++.....   ...+|+++|+.|      .|||||+++++|...+.  
T Consensus        53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~E~~il~~l------~hpniv~l~~~~~~~~~~~  123 (420)
T 1j1b_A           53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---FKNRELQIMRKL------DHCNIVRLRYFFYSSGEKK  123 (420)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT---SCCHHHHHHHTC------CCTTBCCEEEEEEEEETTT
T ss_pred             cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch---hHHHHHHHHHHc------CCCCccceeeEEeccCCCC
Confidence            4579999999999999999999999999999998865432   334799999998      78899999999876432  


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      +..++++||||+.++|..++...  ....+++..++.++.||+.||+|||++ ||+||||||+||||+..          
T Consensus       124 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NILl~~~----------  192 (420)
T 1j1b_A          124 DEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF-GICHRDIKPQNLLLDPD----------  192 (420)
T ss_dssp             TEEEEEEEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCSGGGEEEETT----------
T ss_pred             cceeEEeehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChhhEEEeCC----------
Confidence            33467899999988888877542  234599999999999999999999997 99999999999999641          


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (420)
T 1j1b_A          193 --------------------------------------------------------------------------------  192 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il  353 (530)
                                               ...+||+|||+++...  ......+||+.|+|||++.+. .|+.++|||||||++
T Consensus       193 -------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il  247 (420)
T 1j1b_A          193 -------------------------TAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVL  247 (420)
T ss_dssp             -------------------------TTEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHH
T ss_pred             -------------------------CCeEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHH
Confidence                                     2458999999997542  234567899999999999875 699999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |||++|++||.+.+      ..+++..++..+|.++.+.+......   +... .+..+   ...++..      .+...
T Consensus       248 ~ell~G~~pf~~~~------~~~~l~~i~~~lg~p~~~~~~~~~~~---~~~~-~~p~~---~~~~~~~------~~~~~  308 (420)
T 1j1b_A          248 AELLLGQPIFPGDS------GVDQLVEIIKVLGTPTREQIREMNPN---YTEF-KFPQI---KAHPWTK------VFRPR  308 (420)
T ss_dssp             HHHHHSSCSSCCSS------HHHHHHHHHHHHCSCCHHHHHHHCSC---CCCC-CCCCC---CCCCHHH------HSCTT
T ss_pred             HHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhhChh---hhhh-ccCcc---CCCCHHH------hcCCC
Confidence            99999999997644      67888999999998876554221110   0000 00000   0000000      13345


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .++++.+||.+||++||.+|||+.|+|+||||+..
T Consensus       309 ~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~  343 (420)
T 1j1b_A          309 TPPEAIALCSRLLEYTPTARLTPLEACAHSFFDEL  343 (420)
T ss_dssp             SCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred             CCHHHHHHHHHhccCChhHCCCHHHHhCCHhhccc
Confidence            67899999999999999999999999999999764

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1.5e-47  Score=396.18  Aligned_cols=295  Identities=19%  Similarity=0.220  Sum_probs=209.2

Q ss_pred             CCCEEEEEEeccc--cceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           41 NGRYVVQSKLGWG--HFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        41 ~~~y~i~~~LG~G--~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .++|+++++||+|  +||+||+|++..+++.||||++....   .....+.+|+.+++++      .|||||+++++|..
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~   97 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLF------NHPNIVPYRATFIA   97 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhC------CCCCCCcEeEEEEE
Confidence            5799999999999  99999999999999999999987653   2345677899999999      78899999999984


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                          ...+||||||| +++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+||||+.         
T Consensus        98 ----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~NIll~~---------  163 (389)
T 3gni_B           98 ----DNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM-GYVHRSVKASHILISV---------  163 (389)
T ss_dssp             ----TTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT---------
T ss_pred             ----CCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC---------
Confidence                47899999999 89999999876556799999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (389)
T 3gni_B          164 --------------------------------------------------------------------------------  163 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc----------cccCCCCCCCCccCChhhcC--CCCCC
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY----------KQFTNDIQTRQYRCPEVLLG--SKYST  342 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~----------~~~~~~~gt~~y~aPE~l~~--~~~~~  342 (530)
                                                 ++.+||+|||.+....          ......+||+.|+|||++.+  ..|+.
T Consensus       164 ---------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  216 (389)
T 3gni_B          164 ---------------------------DGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDA  216 (389)
T ss_dssp             ---------------------------TCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCT
T ss_pred             ---------------------------CCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCc
Confidence                                       4679999999885321          11233478999999999987  57999


Q ss_pred             cchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccc------ccCccccchhcc
Q 045988          343 PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN------RHGDLRHIRRLR  416 (530)
Q Consensus       343 ~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~------~~~~~~~~~~~~  416 (530)
                      ++|||||||++|+|++|.+||.+....      ..+..+.  .+..+............+..      ....+.......
T Consensus       217 ~~DiwslG~il~el~~g~~pf~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (389)
T 3gni_B          217 KSDIYSVGITACELANGHVPFKDMPAT------QMLLEKL--NGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTS  288 (389)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTTTCCST------THHHHC-----------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHCCCCCCCCCHH------HHHHHHh--cCCCCccccccccccccccccccccccccccccccccC
Confidence            999999999999999999999754421      1111111  11111000000000000000      000000000000


Q ss_pred             cCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .............++...++.+.+||.+||++||.+|||+.|+|+||||+....
T Consensus       289 ~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~~  342 (389)
T 3gni_B          289 TPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKR  342 (389)
T ss_dssp             -----------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC--
T ss_pred             ccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHHhh
Confidence            000000001111244566789999999999999999999999999999987653

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.9e-47  Score=385.41  Aligned_cols=255  Identities=26%  Similarity=0.335  Sum_probs=205.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|++.++||+|+||+||+|++..+++.||||++....  ...+.+.+|+.+++.+      .||||+++++++.    
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~~----   75 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML------NHENVVKFYGHRR----   75 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHC------CCTTBCCEEEEEE----
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhC------CCCCCCeEEEEEe----
Confidence            479999999999999999999999999999999986543  2346678999999999      7889999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .+...|+||||| +++|.+++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~-givH~Dlkp~NIll~~------------  140 (323)
T 3tki_A           76 EGNIQYLFLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHGI-GITHRDIKPENLLLDE------------  140 (323)
T ss_dssp             CSSEEEEEEECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT------------
T ss_pred             cCCeEEEEEEcCCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CccccccchHHEEEeC------------
Confidence            557899999999 8899988853  33499999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (323)
T 3tki_A          141 --------------------------------------------------------------------------------  140 (323)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-----cccCCCCCCCCccCChhhcCCCC-CCcchhHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-----KQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFAC  351 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-----~~~~~~~gt~~y~aPE~l~~~~~-~~~~DiWSlG~  351 (530)
                                              ++.+||+|||++....     ......+||+.|+|||++.+..+ +.++|||||||
T Consensus       141 ------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~  196 (323)
T 3tki_A          141 ------------------------RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGI  196 (323)
T ss_dssp             ------------------------TCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHH
Confidence                                    4579999999996532     22346689999999999988775 77899999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|..||......     ......+... .                                       ......
T Consensus       197 il~~ll~g~~pf~~~~~~-----~~~~~~~~~~-~---------------------------------------~~~~~~  231 (323)
T 3tki_A          197 VLTAMLAGELPWDQPSDS-----CQEYSDWKEK-K---------------------------------------TYLNPW  231 (323)
T ss_dssp             HHHHHHHSSCSCSSSCTT-----SHHHHHHHTT-C---------------------------------------TTSTTG
T ss_pred             HHHHHHhCCCCCCCCchH-----HHHHHHHhcc-c---------------------------------------ccCCcc
Confidence            999999999999654311     1111111000 0                                       000111


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ...++.+.+||.+||..||.+|||+.|+|+||||+...
T Consensus       232 ~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~~  269 (323)
T 3tki_A          232 KKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPL  269 (323)
T ss_dssp             GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCCC
T ss_pred             ccCCHHHHHHHHHHccCChhhCcCHHHHhhChhhcccc
Confidence            34567889999999999999999999999999998653

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=4.1e-47  Score=393.56  Aligned_cols=290  Identities=27%  Similarity=0.431  Sum_probs=224.0

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ..|+.. ..+|.+.++||+|+||+||+|++..+++ ||+|.+.....   ...+|+++|+.+      .||||++++++|
T Consensus        33 ~~~~~~-~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~---~~~~E~~il~~l------~h~niv~l~~~~  101 (394)
T 4e7w_A           33 KTGEQR-EIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKR---FKNRELQIMRIV------KHPNVVDLKAFF  101 (394)
T ss_dssp             SSCCEE-EEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTT---SCCHHHHHHHTC------CCTTBCCEEEEE
T ss_pred             CCCCcc-cceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcc---hHHHHHHHHHhC------CCCCcceEEEEE
Confidence            456666 5789999999999999999999888777 77776554322   234799999998      788999999999


Q ss_pred             eecC--CCCcEEEEEEeccCcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          114 KHSG--PNGQHVCMVFEYLGENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       114 ~~~~--~~~~~~~lVmE~~~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ...+  ....++++||||+.+++...+...  ....+++..++.|+.||+.||+|||++ ||+||||||+||||+..   
T Consensus       102 ~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~Nill~~~---  177 (394)
T 4e7w_A          102 YSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI-GICHRDIKPQNLLLDPP---  177 (394)
T ss_dssp             EEESSSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEETT---
T ss_pred             EecCCCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCCCHHHEEEcCC---
Confidence            7654  234568899999988877665432  234599999999999999999999997 99999999999999621   


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (394)
T 4e7w_A          178 --------------------------------------------------------------------------------  177 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc--ccccCCCCCCCCccCChhhcCC-CCCCcchh
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT--YKQFTNDIQTRQYRCPEVLLGS-KYSTPADL  346 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~--~~~~~~~~gt~~y~aPE~l~~~-~~~~~~Di  346 (530)
                                                      ++.+||+|||+|+..  .......+||+.|+|||++.+. .|+.++||
T Consensus       178 --------------------------------~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di  225 (394)
T 4e7w_A          178 --------------------------------SGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDI  225 (394)
T ss_dssp             --------------------------------TTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHH
T ss_pred             --------------------------------CCcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHH
Confidence                                            467999999999754  2334567899999999999875 49999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|.+||.+.+      ..+++..+...+|.++...+......  + .. ..+..+   ...++      
T Consensus       226 wSlG~il~ell~g~~pf~~~~------~~~~l~~i~~~~g~p~~~~~~~~~~~--~-~~-~~~~~~---~~~~~------  286 (394)
T 4e7w_A          226 WSTGCVMAELMQGQPLFPGES------GIDQLVEIIKVLGTPSREQIKTMNPN--Y-ME-HKFPQI---RPHPF------  286 (394)
T ss_dssp             HHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHHHCGG--G-SS-SCCCCC---CCCCH------
T ss_pred             HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhhChh--h-hh-hccccc---cCCcH------
Confidence            999999999999999997654      67889999999998877654221100  0 00 000000   00000      


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ...+....++++.+||.+||++||.+|||+.|+|+||||+...
T Consensus       287 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  329 (394)
T 4e7w_A          287 SKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELR  329 (394)
T ss_dssp             HHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTT
T ss_pred             HHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhc
Confidence            1123345678999999999999999999999999999998754

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-47  Score=387.88  Aligned_cols=284  Identities=31%  Similarity=0.441  Sum_probs=220.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc------chHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      .++|++.+.||+|+||.||+|++..+|+.||||++.....      ....+.+|+.+++.+      .||||++++++|.
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~   82 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL------SHPNIIGLLDAFG   82 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHC------CCTTBCCEEEEEC
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhC------CCCCCCeEEEEEe
Confidence            4789999999999999999999999999999999875321      234678999999999      7889999999998


Q ss_pred             ecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                          .....++||||+.++|..++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.         
T Consensus        83 ----~~~~~~lv~e~~~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~~---------  147 (346)
T 1ua2_A           83 ----HKSNISLVFDFMETDLEVIIKDN-SLVLTPSHIKAYMLMTLQGLEYLHQH-WILHRDLKPNNLLLDE---------  147 (346)
T ss_dssp             ----CTTCCEEEEECCSEEHHHHHTTC-CSSCCSSHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT---------
T ss_pred             ----eCCceEEEEEcCCCCHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHHHC-CEECCCCCHHHEEEcC---------
Confidence                44789999999988999888643 23488999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (346)
T 1ua2_A          148 --------------------------------------------------------------------------------  147 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFA  350 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG  350 (530)
                                                 ++.+||+|||++.....   .....+||+.|+|||++.+. .|+.++||||||
T Consensus       148 ---------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG  200 (346)
T 1ua2_A          148 ---------------------------NGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVG  200 (346)
T ss_dssp             ---------------------------TCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHH
T ss_pred             ---------------------------CCCEEEEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHH
Confidence                                       45799999999975432   24456899999999999764 489999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+.+      ..+.+..+....|.++...|........+... ....      ..+..       ..
T Consensus       201 ~il~ell~g~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~-------~~  260 (346)
T 1ua2_A          201 CILAELLLRVPFLPGDS------DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTF-KSFP------GIPLH-------HI  260 (346)
T ss_dssp             HHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCC-CCCC------CCCHH-------HH
T ss_pred             HHHHHHHHCCCCCCCCC------HHHHHHHHHHHcCCCChhhhhhhccCcccccc-cccC------CCChH-------Hh
Confidence            99999999999997544      66778888888888776554332211111000 0000      00000       11


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLL  472 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~  472 (530)
                      ....+.++.+||.+||+.||.+|||+.|+|+||||+..+...
T Consensus       261 ~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~~~~~~  302 (346)
T 1ua2_A          261 FSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPT  302 (346)
T ss_dssp             CTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCCC
T ss_pred             hccCCHHHHHHHHHHhccChhhCCCHHHHhcChhhhcCCCCC
Confidence            234568899999999999999999999999999999876543

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=7.1e-47  Score=386.46  Aligned_cols=292  Identities=27%  Similarity=0.408  Sum_probs=218.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC--
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP--  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~--  118 (530)
                      .++|++.++||+|+||+||+|++..+++.||||++...........+|++.+..+      .||||++++++|...+.  
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l------~h~niv~~~~~~~~~~~~~   95 (360)
T 3e3p_A           22 MDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVL------HHPNIVQLQSYFYTLGERD   95 (360)
T ss_dssp             HTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHH------CCTTBCCEEEEEEEECSSC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhc------CCCCcccHHHhhhcccccc
Confidence            4789999999999999999999999999999998877666566777888888888      78899999999976432  


Q ss_pred             -CCcEEEEEEeccCcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHH--hhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          119 -NGQHVCMVFEYLGENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLH--RELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       119 -~~~~~~lVmE~~~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH--~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                       ...++++||||+.++|...+...  ....+++..+..++.||+.||.|||  ++ ||+||||||+|||++..       
T Consensus        96 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~-~ivH~Dlkp~NIll~~~-------  167 (360)
T 3e3p_A           96 RRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV-NVCHRDIKPHNVLVNEA-------  167 (360)
T ss_dssp             TTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT-CCBCSCCCGGGEEEETT-------
T ss_pred             ccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC-CeecCcCCHHHEEEeCC-------
Confidence             23458999999988887766532  3345899999999999999999999  86 99999999999999541       


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (360)
T 3e3p_A          168 --------------------------------------------------------------------------------  167 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCC-CCCcchhHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFA  350 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG  350 (530)
                                                  ++.+||+|||++.....  ......||+.|+|||++.+.. ++.++||||||
T Consensus       168 ----------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG  219 (360)
T 3e3p_A          168 ----------------------------DGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVG  219 (360)
T ss_dssp             ----------------------------TTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHH
T ss_pred             ----------------------------CCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHH
Confidence                                        35799999999976432  234567899999999997655 89999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+..      ....+..+.+.++.++...+.........+....       ....++...   ....
T Consensus       220 ~il~ell~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~  283 (360)
T 3e3p_A          220 CIFAEMMLGEPIFRGDN------SAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYN-------SKGIPWSNV---FSDH  283 (360)
T ss_dssp             HHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGC-------CCCCCHHHH---TTTC
T ss_pred             HHHHHHHhCCCCcCCCC------hHHHHHHHHHHcCCCCHHHHHhcccchhhccccc-------cccCCcccc---cchh
Confidence            99999999999997644      6778888999999888776533221111100000       000000111   1122


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ....++++.+||.+||++||.+|||+.|+|+||||+....
T Consensus       284 ~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~  323 (360)
T 3e3p_A          284 SLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHD  323 (360)
T ss_dssp             CCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGC
T ss_pred             hccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCC
Confidence            3346789999999999999999999999999999997654

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.7e-47  Score=386.43  Aligned_cols=253  Identities=25%  Similarity=0.366  Sum_probs=203.0

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeC---CCCeEEEEEEecccc-----cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~-----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      +..++|++.+.||+|+||.||+|++.   .+++.||||++++..     .....+.+|+.+|+.+      .||||++++
T Consensus        14 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~   87 (327)
T 3a62_A           14 IRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV------KHPFIVDLI   87 (327)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHC------CCTTBCCEE
T ss_pred             CCHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhC------CCCCcccee
Confidence            34679999999999999999999985   689999999987642     2345567899999999      788999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ++|.    ....+||||||| +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++.    
T Consensus        88 ~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~Dlkp~Nill~~----  156 (327)
T 3a62_A           88 YAFQ----TGGKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEISMALGHLHQK-GIIYRDLKPENIMLNH----  156 (327)
T ss_dssp             EEEE----CSSCEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTTEEECT----
T ss_pred             EEEE----cCCEEEEEEeCCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhC-CEEcccCCHHHeEECC----
Confidence            9998    457899999999 89999998753  3489999999999999999999997 9999999999999954    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (327)
T 3a62_A          157 --------------------------------------------------------------------------------  156 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                      ++.+||+|||++....   ......+||+.|+|||++.+..++.++||
T Consensus       157 --------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  204 (327)
T 3a62_A          157 --------------------------------QGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDW  204 (327)
T ss_dssp             --------------------------------TSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHH
T ss_pred             --------------------------------CCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccc
Confidence                                            4679999999986532   22345689999999999999899999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|.+||.+..      ....+..+.                                          ..
T Consensus       205 wslG~il~el~~g~~pf~~~~------~~~~~~~i~------------------------------------------~~  236 (327)
T 3a62_A          205 WSLGALMYDMLTGAPPFTGEN------RKKTIDKIL------------------------------------------KC  236 (327)
T ss_dssp             HHHHHHHHHHHHSSCSCCCSS------HHHHHHHHH------------------------------------------HT
T ss_pred             hhHHHHHHHHHHCCCCCCCCC------HHHHHHHHH------------------------------------------hC
Confidence            999999999999999996432      112222221                                          11


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      ...++...+..+.+||.+||..||.+||     ++.|+|+||||+.-
T Consensus       237 ~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~  283 (327)
T 3a62_A          237 KLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHI  283 (327)
T ss_dssp             CCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccCC
Confidence            2234455678899999999999999999     89999999999864

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.2e-47  Score=382.08  Aligned_cols=257  Identities=26%  Similarity=0.444  Sum_probs=201.8

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---------------------------chHHHHHH
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---------------------------YTEAALDE   88 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---------------------------~~~~~~~E   88 (530)
                      |+.+..++|++.+.||+|+||.||+|++..+++.||||++.....                           ..+.+.+|
T Consensus         7 ~~~~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E   86 (298)
T 2zv2_A            7 GDCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQE   86 (298)
T ss_dssp             ---CEETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHH
T ss_pred             CCceeecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHH
Confidence            455567899999999999999999999999999999999865431                           13567899


Q ss_pred             HHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 045988           89 IKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR  167 (530)
Q Consensus        89 i~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~  167 (530)
                      +.+|+++      .||||+++++++...  ....+|+||||+ +++|.+++   ....+++..++.++.||+.||+|||+
T Consensus        87 ~~~l~~l------~h~~iv~~~~~~~~~--~~~~~~lv~e~~~~~~l~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~  155 (298)
T 2zv2_A           87 IAILKKL------DHPNVVKLVEVLDDP--NEDHLYMVFELVNQGPVMEVP---TLKPLSEDQARFYFQDLIKGIEYLHY  155 (298)
T ss_dssp             HHHHHTC------CCTTBCCEEEEEECS--SSSEEEEEEECCTTCBSCCSS---CSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC------CCCCCCeEEEEEEcC--CCCEEEEEEecCCCCcHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999      788999999999853  357899999999 77877654   23459999999999999999999999


Q ss_pred             hCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCC
Q 045988          168 ELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPS  247 (530)
Q Consensus       168 ~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (530)
                      + ||+||||||+|||++.                                                              
T Consensus       156 ~-~ivH~Dlkp~Nil~~~--------------------------------------------------------------  172 (298)
T 2zv2_A          156 Q-KIIHRDIKPSNLLVGE--------------------------------------------------------------  172 (298)
T ss_dssp             T-TEECCCCCGGGEEECT--------------------------------------------------------------
T ss_pred             C-CeeccCCCHHHEEECC--------------------------------------------------------------
Confidence            7 9999999999999954                                                              


Q ss_pred             CCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCC
Q 045988          248 SPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDI  324 (530)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~  324 (530)
                                                                            ++.+||+|||++......   .....
T Consensus       173 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  198 (298)
T 2zv2_A          173 ------------------------------------------------------DGHIKIADFGVSNEFKGSDALLSNTV  198 (298)
T ss_dssp             ------------------------------------------------------TSCEEECCCTTCEECSSSSCEECCCC
T ss_pred             ------------------------------------------------------CCCEEEecCCCccccccccccccCCc
Confidence                                                                  457999999999754322   34568


Q ss_pred             CCCCccCChhhcCCC---CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccc
Q 045988          325 QTRQYRCPEVLLGSK---YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRD  401 (530)
Q Consensus       325 gt~~y~aPE~l~~~~---~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  401 (530)
                      ||+.|+|||++.+..   ++.++|||||||++|+|++|..||....       ...+...... +..             
T Consensus       199 gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~-------~~~~~~~~~~-~~~-------------  257 (298)
T 2zv2_A          199 GTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER-------IMCLHSKIKS-QAL-------------  257 (298)
T ss_dssp             SCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS-------HHHHHHHHHH-CCC-------------
T ss_pred             CCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc-------HHHHHHHHhc-ccC-------------
Confidence            999999999998765   3778999999999999999999995322       1111110000 000             


Q ss_pred             cccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          402 FFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                                               .+......++++.+||.+||+.||.+|||+.|+|+||||+
T Consensus       258 -------------------------~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~hp~~~  297 (298)
T 2zv2_A          258 -------------------------EFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVT  297 (298)
T ss_dssp             -------------------------CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTCHHHH
T ss_pred             -------------------------CCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhcCcccc
Confidence                                     0011124567899999999999999999999999999996

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=8.7e-47  Score=380.12  Aligned_cols=268  Identities=27%  Similarity=0.388  Sum_probs=214.3

Q ss_pred             ccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-------chHHHHHHHHHHHHhhcCCCCC
Q 045988           30 YHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-------YTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        30 ~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-------~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      +.|... +.+ .++|++.+.||+|+||.||+|++..+|+.||+|++.....       ..+.+.+|+.+++++      .
T Consensus         2 ~~~~~~-~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~   73 (321)
T 2a2a_A            2 MEPFKQ-QKV-EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQV------L   73 (321)
T ss_dssp             CCCCBC-SCH-HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHC------C
T ss_pred             CCcccc-hhh-hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhC------C
Confidence            344443 334 5789999999999999999999999999999999876432       356788999999999      7


Q ss_pred             CcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcE
Q 045988          103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENV  181 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NI  181 (530)
                      ||||+++++++.    .....++||||+ +++|.+++..  ...+++..+..++.||+.||+|||++ ||+||||||+||
T Consensus        74 h~~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~-~ivH~dikp~NI  146 (321)
T 2a2a_A           74 HHNVITLHDVYE----NRTDVVLILELVSGGELFDFLAQ--KESLSEEEATSFIKQILDGVNYLHTK-KIAHFDLKPENI  146 (321)
T ss_dssp             CTTBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHT--CSCEEHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGE
T ss_pred             CCCcceEEEEEe----cCCEEEEEEEcCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCChHHE
Confidence            888999999998    457899999999 8899999964  34589999999999999999999997 999999999999


Q ss_pred             EEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 045988          182 LLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGD  261 (530)
Q Consensus       182 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (530)
                      |++.....                                                                        
T Consensus       147 l~~~~~~~------------------------------------------------------------------------  154 (321)
T 2a2a_A          147 MLLDKNIP------------------------------------------------------------------------  154 (321)
T ss_dssp             EESCTTSS------------------------------------------------------------------------
T ss_pred             EEecCCCC------------------------------------------------------------------------
Confidence            99542100                                                                        


Q ss_pred             CcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCC
Q 045988          262 SVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                              ...++|+|||++.....  ......||+.|+|||++.+..
T Consensus       155 ----------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  194 (321)
T 2a2a_A          155 ----------------------------------------IPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEP  194 (321)
T ss_dssp             ----------------------------------------SCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCC
T ss_pred             ----------------------------------------cCCEEEccCccceecCccccccccCCCCCccCcccccCCC
Confidence                                                    12699999999976433  235567999999999999989


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      ++.++|||||||++|+|++|..||.+..      ....+..+.......+..                            
T Consensus       195 ~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~----------------------------  240 (321)
T 2a2a_A          195 LGLEADMWSIGVITYILLSGASPFLGDT------KQETLANITSVSYDFDEE----------------------------  240 (321)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHTTCCCCCHH----------------------------
T ss_pred             CCCccccHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhcccccChh----------------------------
Confidence            9999999999999999999999996432      222222222111111110                            


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                                +....+..+.+||.+||..||.+|||+.|+|+||||+..
T Consensus       241 ----------~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp~~~~~  279 (321)
T 2a2a_A          241 ----------FFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPV  279 (321)
T ss_dssp             ----------HHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHSTTTSCS
T ss_pred             ----------hhcccCHHHHHHHHHHcCCChhhCcCHHHHhcCccccCC
Confidence                      112346789999999999999999999999999999853

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=1.6e-47  Score=388.90  Aligned_cols=260  Identities=25%  Similarity=0.392  Sum_probs=208.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.+.||+|+||+||+|.++.+++.||||++.+...   ...+|++++.++.     .||||++++++|.    ++
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~E~~~l~~~~-----~hp~iv~~~~~~~----~~   88 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR---DPTEEIEILLRYG-----QHPNIITLKDVYD----DG   88 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC---CCHHHHHHHHHHT-----TSTTBCCEEEEEE----CS
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC---ChHHHHHHHHHhc-----CCCCcCeEEEEEE----cC
Confidence            4689999999999999999999999999999999876543   3457999998884     6899999999998    55


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+|+||||| +++|.+++..  ...+++..+..++.||+.||+|||++ ||+||||||+|||+.....           
T Consensus        89 ~~~~lv~E~~~gg~L~~~i~~--~~~~~~~~~~~~~~qi~~al~~lH~~-givHrDlkp~NIl~~~~~~-----------  154 (342)
T 2qr7_A           89 KYVYVVTELMKGGELLDKILR--QKFFSEREASAVLFTITKTVEYLHAQ-GVVHRDLKPSNILYVDESG-----------  154 (342)
T ss_dssp             SEEEEEECCCCSCBHHHHHHT--CTTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEESSSSC-----------
T ss_pred             CEEEEEEeCCCCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC-CcEeccCCHHHEEEecCCC-----------
Confidence            7999999999 8899999864  34599999999999999999999997 9999999999999944110           


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (342)
T 2qr7_A          155 --------------------------------------------------------------------------------  154 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                           ....+||+|||++.....   .....+||+.|+|||++.+..|+.++|||||||++|+|
T Consensus       155 ---------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  213 (342)
T 2qr7_A          155 ---------------------NPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTM  213 (342)
T ss_dssp             ---------------------SGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------CcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHH
Confidence                                 024599999999975432   23456899999999999887899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|.+||......   .....+..+..  +..+                                    .....+...++
T Consensus       214 l~g~~Pf~~~~~~---~~~~~~~~i~~--~~~~------------------------------------~~~~~~~~~s~  252 (342)
T 2qr7_A          214 LTGYTPFANGPDD---TPEEILARIGS--GKFS------------------------------------LSGGYWNSVSD  252 (342)
T ss_dssp             HHSSCSSCSSTTS---CHHHHHHHHHH--CCCC------------------------------------CCSTTTTTSCH
T ss_pred             hcCCCCCCCCCcC---CHHHHHHHHcc--CCcc------------------------------------cCccccccCCH
Confidence            9999999643211   11111111110  0000                                    00012234678


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ++.+||.+||+.||.+|||+.|+|+||||...
T Consensus       253 ~~~~li~~~L~~dP~~R~t~~~il~hp~~~~~  284 (342)
T 2qr7_A          253 TAKDLVSKMLHVDPHQRLTAALVLRHPWIVHW  284 (342)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHTTSHHHHTG
T ss_pred             HHHHHHHHHCCCChhHCcCHHHHhcCCeecCc
Confidence            89999999999999999999999999999753

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=5e-46  Score=374.80  Aligned_cols=288  Identities=31%  Similarity=0.474  Sum_probs=228.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeC-CCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDT-QTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~-~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|++.+.||+|+||.||+|++. .+++.||||++....   .....+.+|+.+++.+...   .||||+++++++...
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~h~~i~~~~~~~~~~   86 (326)
T 1blx_A           10 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF---EHPNVVRLFDVCTVS   86 (326)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHT---CCTTBCCEEEEEEEE
T ss_pred             hhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhcc---CCCCeEeeeeeeeec
Confidence            578999999999999999999995 678999999887543   2234677899998888543   689999999998732


Q ss_pred             C-CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 G-PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~-~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                      . ......++||||++++|.+++.......+++..+..++.||+.||.|||++ ||+||||||+|||++.          
T Consensus        87 ~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-gi~H~dlkp~Nili~~----------  155 (326)
T 1blx_A           87 RTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILVTS----------  155 (326)
T ss_dssp             ECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT----------
T ss_pred             ccCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCCHHHeEEcC----------
Confidence            1 134789999999988999999876666699999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (326)
T 1blx_A          156 --------------------------------------------------------------------------------  155 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                                ++.++|+|||++....  .......||+.|+|||++.+..++.++|||||||++
T Consensus       156 --------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  209 (326)
T 1blx_A          156 --------------------------SGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIF  209 (326)
T ss_dssp             --------------------------TCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred             --------------------------CCCEEEecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHH
Confidence                                      4579999999997543  234566899999999999998999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc-cccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS-RDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |+|++|.+||.+..      ....+..+...++.++...+...... ...+....                ......+..
T Consensus       210 ~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~  267 (326)
T 1blx_A          210 AEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKS----------------AQPIEKFVT  267 (326)
T ss_dssp             HHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCC----------------CCCGGGTCC
T ss_pred             HHHHcCCCCCCCCC------HHHHHHHHHHHcCCCCcccCccccccchhhhcccC----------------cchhhhccc
Confidence            99999999997543      56777888888887765544322111 00000000                000112334


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ..+..+.+||.+||..||.+|||+.|+|+||||+....
T Consensus       268 ~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  305 (326)
T 1blx_A          268 DIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER  305 (326)
T ss_dssp             SCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             cCCHHHHHHHHHHcCCCcccCCCHHHHhcCccccccch
Confidence            56788999999999999999999999999999987554

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=3.8e-47  Score=397.67  Aligned_cols=254  Identities=21%  Similarity=0.372  Sum_probs=209.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|+++++||+|+||+||+|+++.+++.||||++++..    .....+.+|+.++..+      .||||++++++|.  
T Consensus        73 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~------~hp~Iv~l~~~~~--  144 (437)
T 4aw2_A           73 REDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG------DSKWITTLHYAFQ--  144 (437)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHS------CTTTBCCEEEEEE--
T ss_pred             hhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhC------CCCCEEEEEEEEe--
Confidence            578999999999999999999999999999999987632    2234478899999988      7899999999998  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        +...+||||||| +++|.+++... ...+++..++.|+.||+.||+|||++ |||||||||+||||+.          
T Consensus       145 --~~~~~~lV~Ey~~gg~L~~~l~~~-~~~l~e~~~~~~~~qi~~aL~~LH~~-giiHrDLKp~NILl~~----------  210 (437)
T 4aw2_A          145 --DDNNLYLVMDYYVGGDLLTLLSKF-EDRLPEEMARFYLAEMVIAIDSVHQL-HYVHRDIKPDNILMDM----------  210 (437)
T ss_dssp             --CSSEEEEEECCCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT----------
T ss_pred             --eCCEEEEEEecCCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHHhC-CeEecccCHHHeeEcC----------
Confidence              557899999999 99999999742 34599999999999999999999997 9999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (437)
T 4aw2_A          211 --------------------------------------------------------------------------------  210 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhc-----CCCCCCcchh
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLL-----GSKYSTPADL  346 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~-----~~~~~~~~Di  346 (530)
                                                ++.+||+|||+|......    ....+||+.|+|||++.     ...|+.++||
T Consensus       211 --------------------------~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~Dv  264 (437)
T 4aw2_A          211 --------------------------NGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDW  264 (437)
T ss_dssp             --------------------------TSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHH
T ss_pred             --------------------------CCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCee
Confidence                                      567999999999654322    34468999999999997     4569999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|||++|.+||.+.+      ..+....+....                                        .
T Consensus       265 wSlGvil~elltG~~Pf~~~~------~~~~~~~i~~~~----------------------------------------~  298 (437)
T 4aw2_A          265 WSLGVCMYEMLYGETPFYAES------LVETYGKIMNHK----------------------------------------E  298 (437)
T ss_dssp             HHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTHH----------------------------------------H
T ss_pred             HHHHHHHHHHHhCCCCCCCCC------hhHHHHhhhhcc----------------------------------------c
Confidence            999999999999999996433      222222222110                                        0


Q ss_pred             hccCC---hhcHHHHHHHHhhccCcCCCC--CcCHHHHhcCCCCCCC
Q 045988          427 KYDFS---EKDANDMADFLVPILDFVPEK--RPTAAQCLTHPWINVG  468 (530)
Q Consensus       427 ~~~~~---~~~~~~~~dLl~~mL~~dP~~--Rpta~elL~hp~f~~~  468 (530)
                      .+.++   ...++++++||++||+.+|.+  |++++|+++||||+.-
T Consensus       299 ~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff~~i  345 (437)
T 4aw2_A          299 RFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGI  345 (437)
T ss_dssp             HCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGGTTC
T ss_pred             cccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCCCccCCC
Confidence            11111   236789999999999999988  9999999999999864

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=8.5e-47  Score=378.01  Aligned_cols=284  Identities=30%  Similarity=0.475  Sum_probs=214.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|+++++||+|+||+||+|++..+|+.||||++.....   ....+.+|+.+++++      .||||+++++++..  
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~--   73 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQL------KHPNLVNLLEVFRR--   73 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEE--
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhC------CCCCccchhheeec--
Confidence            3689999999999999999999999999999998765432   245677899999999      78889999999984  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ....++||||+ +++|..++..  ...+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        74 --~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH~~-~ivH~dlkp~Nil~~~-----------  137 (311)
T 4agu_A           74 --KRRLHLVFEYCDHTVLHELDRY--QRGVPEHLVKSITWQTLQAVNFCHKH-NCIHRDVKPENILITK-----------  137 (311)
T ss_dssp             --TTEEEEEEECCSEEHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT-----------
T ss_pred             --CCeEEEEEEeCCCchHHHHHhh--hcCCCHHHHHHHHHHHHHHHHHHHHC-CCcCCCCChhhEEEcC-----------
Confidence              47899999999 5666666643  34599999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (311)
T 4agu_A          138 --------------------------------------------------------------------------------  137 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACI  352 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~i  352 (530)
                                               ++.++|+|||++.....   .....+||+.|+|||++.+ ..++.++|||||||+
T Consensus       138 -------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~i  192 (311)
T 4agu_A          138 -------------------------HSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCV  192 (311)
T ss_dssp             -------------------------TSCEEECCCTTCEECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHH
T ss_pred             -------------------------CCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHH
Confidence                                     45799999999976432   2345678999999999986 568999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|.+||.+..      ..+.+..+...++..+......... ..++... ....     ........    ....
T Consensus       193 l~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~-----~~~~~~~~----~~~~  255 (311)
T 4agu_A          193 FAELLSGVPLWPGKS------DVDQLYLIRKTLGDLIPRHQQVFST-NQYFSGV-KIPD-----PEDMEPLE----LKFP  255 (311)
T ss_dssp             HHHHHHSSCSCCCSS------HHHHHHHHHHHHCSCCHHHHHHHHT-CGGGTTC-CCCC-----CSSCCCHH----HHCT
T ss_pred             HHHHHhCCCCCCCCC------HHHHHHHHHHHhccccccccccccc-ccccccC-cCCC-----ccccchhh----hhcc
Confidence            999999999997544      5677777888877765543211000 0000000 0000     00000000    0112


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ..+.++.+||.+||++||.+|||+.|+|+||||+....
T Consensus       256 ~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  293 (311)
T 4agu_A          256 NISYPALGLLKGCLHMDPTERLTCEQLLHHPYFENIRE  293 (311)
T ss_dssp             TCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGGTTCC-
T ss_pred             cccHHHHHHHHHHccCChhhcCCHHHHhcChHHHhccC
Confidence            45778999999999999999999999999999997554

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=4.4e-47  Score=383.16  Aligned_cols=261  Identities=25%  Similarity=0.418  Sum_probs=190.9

Q ss_pred             CCEEEE---EEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQ---SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~---~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .+|++.   ++||+|+||+||+|.+..+++.||||++....  .....+|+.+++.+.     .||||++++++|.    
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~e~~~l~~l~-----~h~niv~~~~~~~----   76 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRM--EANTQKEITALKLCE-----GHPNIVKLHEVFH----   76 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGG--HHHHHHHHHHHHHTT-----TCTTBCCEEEEEE----
T ss_pred             hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChhh--hhhHHHHHHHHHHhc-----CCCCeeEEEEEEE----
Confidence            468876   78999999999999999999999999987643  466788999999984     5899999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      +....||||||| +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++....         
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIll~~~~~---------  144 (325)
T 3kn6_A           77 DQLHTFLVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMHDV-GVVHRDLKPENLLFTDEND---------  144 (325)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEEC------------
T ss_pred             cCCEEEEEEEccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCHHHEEEecCCC---------
Confidence            557899999999 88999999753  4599999999999999999999997 9999999999999965110         


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (325)
T 3kn6_A          145 --------------------------------------------------------------------------------  144 (325)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                              ...++|+|||++....   ......+||+.|+|||++.+..|+.++|||||||++|
T Consensus       145 ------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~  200 (325)
T 3kn6_A          145 ------------------------NLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILY  200 (325)
T ss_dssp             -------------------------CEEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHH
T ss_pred             ------------------------cccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHH
Confidence                                    2469999999997543   2235567899999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC----
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF----  430 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  430 (530)
                      +|++|.+||.............  ..+..+..                                       ..+.+    
T Consensus       201 ~ll~g~~pf~~~~~~~~~~~~~--~~~~~i~~---------------------------------------~~~~~~~~~  239 (325)
T 3kn6_A          201 TMLSGQVPFQSHDRSLTCTSAV--EIMKKIKK---------------------------------------GDFSFEGEA  239 (325)
T ss_dssp             HHHHSSCTTC-------CCCHH--HHHHHHTT---------------------------------------TCCCCCSHH
T ss_pred             HHHhCCCCCCCCccccccccHH--HHHHHHHc---------------------------------------CCCCCCccc
Confidence            9999999997544221111111  11111100                                       00001    


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ....++++.+||.+||++||.+|||+.|+|+||||+....
T Consensus       240 ~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~~~~~~  279 (325)
T 3kn6_A          240 WKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQ  279 (325)
T ss_dssp             HHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGGCTTCC
T ss_pred             ccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhhccCcc
Confidence            1235688999999999999999999999999999997644

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=4.4e-47  Score=391.79  Aligned_cols=259  Identities=23%  Similarity=0.346  Sum_probs=210.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|++.+.||+|+||+||+|.+..+++.||+|++.... .....+.+|+.+|+.|      .||||++++++|.    .
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~~~~~~~----~  119 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQL------HHPKLINLHDAFE----D  119 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTC------CSTTBCCEEEEEE----C
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhC------CCcCCCeEEEEEE----e
Confidence            378999999999999999999999999999999987643 2345678899999888      7889999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ...+|+||||| +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++...           
T Consensus       120 ~~~~~lv~E~~~gg~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDlkp~NIll~~~~-----------  186 (387)
T 1kob_A          120 KYEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEH-SIVHLDIKPENIMCETKK-----------  186 (387)
T ss_dssp             SSEEEEEEECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSTT-----------
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccchHHeEEecCC-----------
Confidence            57899999999 88999988643 23589999999999999999999997 999999999999995310           


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (387)
T 1kob_A          187 --------------------------------------------------------------------------------  186 (387)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                             ...+||+|||++......  ....+||+.|+|||++.+..++.++|||||||++|+|
T Consensus       187 -----------------------~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  243 (387)
T 1kob_A          187 -----------------------ASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVL  243 (387)
T ss_dssp             -----------------------CCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred             -----------------------CCceEEEecccceecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHH
Confidence                                   346999999999764322  2344799999999999998999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|.+||.+..      ....+..+....-..+                                      .......++
T Consensus       244 ltg~~Pf~~~~------~~~~~~~i~~~~~~~~--------------------------------------~~~~~~~s~  279 (387)
T 1kob_A          244 LSGLSPFAGED------DLETLQNVKRCDWEFD--------------------------------------EDAFSSVSP  279 (387)
T ss_dssp             HHSCCSSCCSS------HHHHHHHHHHCCCCCC--------------------------------------SSTTTTSCH
T ss_pred             HhCCCCCCCCC------HHHHHHHHHhCCCCCC--------------------------------------ccccccCCH
Confidence            99999996432      2222222211100000                                      011234578


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ++.+||.+||+.||.+|||+.|+|+||||+...
T Consensus       280 ~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  312 (387)
T 1kob_A          280 EAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDH  312 (387)
T ss_dssp             HHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHhhCccccCCc
Confidence            899999999999999999999999999998653

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=1.5e-46  Score=379.42  Aligned_cols=287  Identities=23%  Similarity=0.338  Sum_probs=217.9

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|++.++||+|+||+||+|++..+++.||||+++...  ...+.+|+.+|+++.     .||||+++++++...  .
T Consensus        34 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~E~~~l~~l~-----~~~~i~~~~~~~~~~--~  104 (330)
T 3nsz_A           34 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--KKKIKREIKILENLR-----GGPNIITLADIVKDP--V  104 (330)
T ss_dssp             EGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC--HHHHHHHHHHHHHHT-----TSTTBCCEEEEEECT--T
T ss_pred             CCCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc--hHHHHHHHHHHHHcC-----CCCCEEEeeeeeccC--C
Confidence            4689999999999999999999999999999999987543  567889999999995     489999999999854  3


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....++||||+ +++|..++.     .+++..++.++.||+.||+|||++ ||+||||||+|||++..            
T Consensus       105 ~~~~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dikp~Nil~~~~------------  166 (330)
T 3nsz_A          105 SRTPALVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHSM-GIMHRDVKPHNVMIDHE------------  166 (330)
T ss_dssp             TCCEEEEEECCCCCCHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEETT------------
T ss_pred             CCceEEEEeccCchhHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEEcCC------------
Confidence            57899999999 788888764     289999999999999999999997 99999999999999641            


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (330)
T 3nsz_A          167 --------------------------------------------------------------------------------  166 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~e  355 (530)
                                             ...++|+|||++....  .......||+.|+|||++.+ ..++.++|||||||++|+
T Consensus       167 -----------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~  223 (330)
T 3nsz_A          167 -----------------------HRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLAS  223 (330)
T ss_dssp             -----------------------TTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHH
T ss_pred             -----------------------CCEEEEEeCCCceEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHH
Confidence                                   2369999999997543  33455689999999999987 569999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhh-cCCCc-ccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIA-FGGRY-SRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |++|..||....     ...+.+..+...++....... ..... ....+....     .......+...  ........
T Consensus       224 ll~g~~p~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~  291 (330)
T 3nsz_A          224 MIFRKEPFFHGH-----DNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDIL-----GRHSRKRWERF--VHSENQHL  291 (330)
T ss_dssp             HHHTCSSSSCCS-----SHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHH-----CCCCCCCGGGG--CCTTTGGG
T ss_pred             HHhCCCCcccCC-----chHHHHHHHHHhcCCchhhhHHHHhccccccchhhhh-----hhccccchhhh--cccccccc
Confidence            999999995322     256667777777664332111 00000 000000000     00000000000  00111233


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .++++.+||.+||++||.+|||++|+|+||||+.-
T Consensus       292 ~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~  326 (330)
T 3nsz_A          292 VSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV  326 (330)
T ss_dssp             CCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             CCHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhh
Confidence            57899999999999999999999999999999854

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=9.6e-47  Score=384.44  Aligned_cols=296  Identities=27%  Similarity=0.387  Sum_probs=226.1

Q ss_pred             ccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           32 AVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        32 ~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      |..++..+ .++|++.+.||+|+||.||+|++..+|+.||||++....  .....+.+|+.+++++      .||||+++
T Consensus         2 p~~~~~~i-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~   74 (353)
T 2b9h_A            2 PKRIVYNI-SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHF------KHENIITI   74 (353)
T ss_dssp             CTTCCCCS-CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHC------CCTTBCCE
T ss_pred             Cccccccc-ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhC------cCCCcCCe
Confidence            55667777 689999999999999999999999999999999986432  2345677899999999      78889999


Q ss_pred             cceeeecC-CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccC
Q 045988          110 LDHFKHSG-PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID  188 (530)
Q Consensus       110 ~~~~~~~~-~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~  188 (530)
                      ++++.... ......|+||||++++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+|||++.   
T Consensus        75 ~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~-~ivH~Dlkp~Nil~~~---  147 (353)
T 2b9h_A           75 FNIQRPDSFENFNEVYIIQELMQTDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHGS-NVIHRDLKPSNLLINS---  147 (353)
T ss_dssp             EEECCCSCSTTCCCEEEEECCCSEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECT---
T ss_pred             eeeecccccCccceEEEEEeccCccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEEcC---
Confidence            99876431 12368999999998899998864   3599999999999999999999997 9999999999999954   


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (353)
T 2b9h_A          148 --------------------------------------------------------------------------------  147 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------------cCCCCCCCCccCChhh
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------------FTNDIQTRQYRCPEVL  335 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------------~~~~~gt~~y~aPE~l  335 (530)
                                                       ++.++|+|||++......             ....+||+.|+|||++
T Consensus       148 ---------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  194 (353)
T 2b9h_A          148 ---------------------------------NCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVM  194 (353)
T ss_dssp             ---------------------------------TCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHH
T ss_pred             ---------------------------------CCcEEEEecccccccccccccccCccccccchhhccccccccCCeee
Confidence                                             457999999999753311             2345789999999998


Q ss_pred             cC-CCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchh
Q 045988          336 LG-SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR  414 (530)
Q Consensus       336 ~~-~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  414 (530)
                      .+ ..++.++|||||||++|+|++|.+||.+..      ....+..+....|.++..............      .....
T Consensus       195 ~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  262 (353)
T 2b9h_A          195 LTSAKYSRAMDVWSCGCILAELFLRRPIFPGRD------YRHQLLLIFGIIGTPHSDNDLRCIESPRAR------EYIKS  262 (353)
T ss_dssp             HSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCSTTTTTTCCCHHHH------HHHHT
T ss_pred             ccCCCccchhhHHHHHHHHHHHHhCCCCCCCCC------cHHHHHHHHHHhCCCchhccccccccchhh------HHhhc
Confidence            65 678999999999999999999999997544      566777788888876532211110000000      00000


Q ss_pred             cccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ....+... .   .......++++.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       263 ~~~~~~~~-~---~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~  314 (353)
T 2b9h_A          263 LPMYPAAP-L---EKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQTYHD  314 (353)
T ss_dssp             SCCCCCCC-H---HHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             ccCCCCcc-h---hhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCccccccCC
Confidence            00000000 0   0112346788999999999999999999999999999987654

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=1.3e-47  Score=393.75  Aligned_cols=253  Identities=23%  Similarity=0.317  Sum_probs=202.7

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccc----hHHHHHHHHHH-HHhhcCCCCCCcceeEeccee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY----TEAALDEIKIL-KQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~----~~~~~~Ei~il-~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      +..++|++++.||+|+||.||+|+++.+++.||||++++....    ...+.+|..++ +.+      .||||++++++|
T Consensus        35 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~------~hp~Iv~l~~~~  108 (373)
T 2r5t_A           35 AKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNV------KHPFLVGLHFSF  108 (373)
T ss_dssp             CCGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCC------CCTTBCCEEEEE
T ss_pred             CChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhC------CCCCCCCEEEEE
Confidence            3457899999999999999999999999999999998765422    23344454442 222      899999999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      .    ....+||||||+ +++|..++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++.       
T Consensus       109 ~----~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NIll~~-------  174 (373)
T 2r5t_A          109 Q----TADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSL-NIVYRDLKPENILLDS-------  174 (373)
T ss_dssp             E----CSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT-------
T ss_pred             E----eCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCHHHEEECC-------
Confidence            8    457999999999 88999998753  3599999999999999999999997 9999999999999955       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (373)
T 2r5t_A          175 --------------------------------------------------------------------------------  174 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                   ++.+||+|||++....   ......+||+.|+|||++.+..|+.++|||||
T Consensus       175 -----------------------------~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  225 (373)
T 2r5t_A          175 -----------------------------QGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCL  225 (373)
T ss_dssp             -----------------------------TSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHH
T ss_pred             -----------------------------CCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHH
Confidence                                         5679999999997532   23455689999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|.+||.+.+      .......                                          +......
T Consensus       226 G~il~ell~G~~Pf~~~~------~~~~~~~------------------------------------------i~~~~~~  257 (373)
T 2r5t_A          226 GAVLYEMLYGLPPFYSRN------TAEMYDN------------------------------------------ILNKPLQ  257 (373)
T ss_dssp             HHHHHHHHHSSCTTCCSB------HHHHHHH------------------------------------------HHHSCCC
T ss_pred             HHHHHHHHcCCCCCCCCC------HHHHHHH------------------------------------------HHhcccC
Confidence            999999999999996432      1111111                                          1122233


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCH----HHHhcCCCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTA----AQCLTHPWINVG  468 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta----~elL~hp~f~~~  468 (530)
                      ++...+..+.+||.+||+.||.+||++    .++++||||+.-
T Consensus       258 ~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~f~~~  300 (373)
T 2r5t_A          258 LKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLI  300 (373)
T ss_dssp             CCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSGGGTTC
T ss_pred             CCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHHhCCccccCC
Confidence            445667899999999999999999996    699999999864

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.7e-47  Score=384.18  Aligned_cols=257  Identities=23%  Similarity=0.389  Sum_probs=203.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .+++|++++.||+|+||.||+|.+ .+++.||||++....   .....+.+|+.+|++|.|    .|+||+++++++.  
T Consensus         7 ~~~~y~i~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~----~~~~iv~~~~~~~--   79 (343)
T 3dbq_A            7 KGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQ----HSDKIIRLYDYEI--   79 (343)
T ss_dssp             SSCEEEEEEEESCCSSEEEEEEEC-TTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT----TCTTBCCEEEEEE--
T ss_pred             ecCEEEEEEEEecCCCeEEEEEEe-CCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhh----cCCceEEEeeeEe--
Confidence            467899999999999999999987 468999999987543   223567889999999965    4489999999998  


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ....+|||||+++++|.+++..  ...+++..+..|+.||+.||+|||++ ||+||||||+|||++.           
T Consensus        80 --~~~~~~lv~e~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~al~~lH~~-~iiHrDikp~NIll~~-----------  143 (343)
T 3dbq_A           80 --TDQYIYMVMECGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIVD-----------  143 (343)
T ss_dssp             --CSSEEEEEECCCSEEHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEET-----------
T ss_pred             --eCCEEEEEEeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceEEEEC-----------
Confidence              4579999999779999999975  34599999999999999999999997 9999999999999943           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (343)
T 3dbq_A          144 --------------------------------------------------------------------------------  143 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcC-----------CCC
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLG-----------SKY  340 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~-----------~~~  340 (530)
                                                +.+||+|||++......     ....+||+.|+|||++.+           ..|
T Consensus       144 --------------------------~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~  197 (343)
T 3dbq_A          144 --------------------------GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKI  197 (343)
T ss_dssp             --------------------------TEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------C
T ss_pred             --------------------------CcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCC
Confidence                                      45999999999754322     235679999999999964           568


Q ss_pred             CCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          341 STPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       341 ~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      +.++|||||||++|+|++|..||....        .....+.......                                
T Consensus       198 ~~~~DiwslG~il~ell~g~~pf~~~~--------~~~~~~~~~~~~~--------------------------------  237 (343)
T 3dbq_A          198 SPKSDVWSLGCILYYMTYGKTPFQQII--------NQISKLHAIIDPN--------------------------------  237 (343)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTTTCC--------SHHHHHHHHHCTT--------------------------------
T ss_pred             CchhhHHHHHHHHHHHHhCCCcchhhh--------hHHHHHHHHhcCC--------------------------------
Confidence            999999999999999999999995322        1222222221110                                


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                           ....++...+.++.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       238 -----~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~~  282 (343)
T 3dbq_A          238 -----HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH  282 (343)
T ss_dssp             -----SCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCCC
T ss_pred             -----cccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCccccccCC
Confidence                 011233344578999999999999999999999999999986543

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.1e-47  Score=393.36  Aligned_cols=257  Identities=24%  Similarity=0.373  Sum_probs=207.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|+++++||+|+||+||+|+++.+|+.||||++++..    .....+.+|+.+|..+      .||||++++++|. 
T Consensus        59 ~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~------~hp~Iv~l~~~~~-  131 (412)
T 2vd5_A           59 QRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNG------DRRWITQLHFAFQ-  131 (412)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHS------CTTTBCCEEEEEE-
T ss_pred             ChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhc------CCCCeeeEEEEEe-
Confidence            3578999999999999999999999999999999987532    2334578899999888      7889999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         +..++||||||| +++|.+++.... ..+++..++.++.||+.||+|||++ |||||||||+|||++.         
T Consensus       132 ---~~~~~~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~-giiHrDLKp~NILld~---------  197 (412)
T 2vd5_A          132 ---DENYLYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHRL-GYVHRDIKPDNILLDR---------  197 (412)
T ss_dssp             ---CSSEEEEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT---------
T ss_pred             ---eCCEEEEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecccCHHHeeecC---------
Confidence               457999999999 999999997543 3599999999999999999999997 9999999999999955         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (412)
T 2vd5_A          198 --------------------------------------------------------------------------------  197 (412)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhc-------CCCCCCc
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLL-------GSKYSTP  343 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~-------~~~~~~~  343 (530)
                                                 ++.+||+|||++......    ....+||+.|+|||++.       ...|+.+
T Consensus       198 ---------------------------~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~  250 (412)
T 2vd5_A          198 ---------------------------CGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPE  250 (412)
T ss_dssp             ---------------------------TSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTH
T ss_pred             ---------------------------CCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChH
Confidence                                       567999999999754322    23468999999999997       3568999


Q ss_pred             chhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhh
Q 045988          344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       344 ~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      +|||||||++|||++|.+||.+.+      .......+......                                    
T Consensus       251 ~DiwSlGvilyelltG~~Pf~~~~------~~~~~~~i~~~~~~------------------------------------  288 (412)
T 2vd5_A          251 CDWWALGVFAYEMFYGQTPFYADS------TAETYGKIVHYKEH------------------------------------  288 (412)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTHHHH------------------------------------
T ss_pred             HhhhHHhHHHHHHHhCCCCCCCCC------HHHHHHHHHhcccC------------------------------------
Confidence            999999999999999999996433      22222222210000                                    


Q ss_pred             hhhhccCChhcHHHHHHHHhhccCcCCCCC---cCHHHHhcCCCCCCC
Q 045988          424 LIEKYDFSEKDANDMADFLVPILDFVPEKR---PTAAQCLTHPWINVG  468 (530)
Q Consensus       424 ~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R---pta~elL~hp~f~~~  468 (530)
                       ..........++++++||.+||+ +|.+|   ++++|+++||||+.-
T Consensus       289 -~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~i  334 (412)
T 2vd5_A          289 -LSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFFFGL  334 (412)
T ss_dssp             -CCCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGTTC
T ss_pred             -cCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcCCC
Confidence             00001123467899999999999 99998   599999999999864

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=1.5e-47  Score=403.34  Aligned_cols=252  Identities=25%  Similarity=0.379  Sum_probs=202.5

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|+++++||+|+||.||+|.+..+|+.||||+++...    .....+.+|+.+|+.+      .||||++++++|..
T Consensus       146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~l~~~~~~  219 (446)
T 4ejn_A          146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS------RHPFLTALKYSFQT  219 (446)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCC------SCTTSCCEEEEEEE
T ss_pred             ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhC------CCCeEeeEEEEEee
Confidence            3578999999999999999999999999999999987542    2234556788777766      78999999999984


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCceeccCCCCcEEEeeccCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR-ELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~-~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          ...+||||||| +++|..++...  ..+++..++.++.||+.||+|||+ + |||||||||+||||+.        
T Consensus       220 ----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~-giiHrDlkp~NIll~~--------  284 (446)
T 4ejn_A          220 ----HDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEK-NVVYRDLKLENLMLDK--------  284 (446)
T ss_dssp             ----TTEEEEEECCCSSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHHT-CCCCCCCCGGGEEECS--------
T ss_pred             ----CCEEEEEEeeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhhcC-CEEECCCCHHHEEECC--------
Confidence                47899999999 88999988643  459999999999999999999998 6 9999999999999955        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       285 --------------------------------------------------------------------------------  284 (446)
T 4ejn_A          285 --------------------------------------------------------------------------------  284 (446)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                  ++.+||+|||+|....   ......+||+.|+|||++.+..|+.++||||||
T Consensus       285 ----------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  336 (446)
T 4ejn_A          285 ----------------------------DGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLG  336 (446)
T ss_dssp             ----------------------------SSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHH
T ss_pred             ----------------------------CCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhH
Confidence                                        4679999999997532   234567899999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+..      .......+                                          ......+
T Consensus       337 ~il~ell~g~~Pf~~~~------~~~~~~~i------------------------------------------~~~~~~~  368 (446)
T 4ejn_A          337 VVMYEMMCGRLPFYNQD------HEKLFELI------------------------------------------LMEEIRF  368 (446)
T ss_dssp             HHHHHHHHSSCSSCCSS------HHHHHHHH------------------------------------------HHCCCCC
T ss_pred             HHHHHHhhCCCCCCCCC------HHHHHHHH------------------------------------------HhCCCCC
Confidence            99999999999996432      11111111                                          1122334


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      +...++++.+||.+||+.||.+||     ++.|+|+||||+..
T Consensus       369 p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~  411 (446)
T 4ejn_A          369 PRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGI  411 (446)
T ss_dssp             CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             CccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccccCC
Confidence            556678999999999999999999     99999999999864

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=5.1e-47  Score=406.62  Aligned_cols=259  Identities=24%  Similarity=0.373  Sum_probs=215.9

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +..++|.+.+.||+|+||.||+|+++.+|+.||||++.+..    .....+.+|+.+|+.+      .|||||+++++|.
T Consensus       181 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l------~hp~Iv~l~~~~~  254 (576)
T 2acx_A          181 VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV------NSRFVVSLAYAYE  254 (576)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             ccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHc------CCCCEeeEEEEEe
Confidence            44678999999999999999999999999999999987542    2345678999999999      7889999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          +...+||||||+ +++|..++.......+++..++.++.||+.||+|||++ |||||||||+||||+.        
T Consensus       255 ----~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~-gIvHrDLKPeNILld~--------  321 (576)
T 2acx_A          255 ----TKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE-RIVYRDLKPENILLDD--------  321 (576)
T ss_dssp             ----CSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECT--------
T ss_pred             ----eCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CEeccCCchheEEEeC--------
Confidence                457999999999 89999999765555699999999999999999999997 9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       322 --------------------------------------------------------------------------------  321 (576)
T 2acx_A          322 --------------------------------------------------------------------------------  321 (576)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                                  ++.+||+|||++.....  .....+||+.|+|||++.+..|+.++|||||||
T Consensus       322 ----------------------------~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGv  373 (576)
T 2acx_A          322 ----------------------------HGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGC  373 (576)
T ss_dssp             ----------------------------TSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHH
T ss_pred             ----------------------------CCCeEEEecccceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHH
Confidence                                        56799999999976432  235568999999999999989999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|.+||.......   ....+....                                         ......++
T Consensus       374 ilyeLltG~~PF~~~~~~~---~~~~i~~~i-----------------------------------------~~~~~~~p  409 (576)
T 2acx_A          374 LLYEMIAGQSPFQQRKKKI---KREEVERLV-----------------------------------------KEVPEEYS  409 (576)
T ss_dssp             HHHHHHHSSCSSSCSSSCC---CHHHHHHHH-----------------------------------------HHCCCCCC
T ss_pred             HHHHHHhCCCCCcccccch---hHHHHHHHh-----------------------------------------hcccccCC
Confidence            9999999999997543211   111111111                                         11112344


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      ...++++.+||.+||+.||.+||     ++.|+++||||+.-
T Consensus       410 ~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i  451 (576)
T 2acx_A          410 ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKL  451 (576)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTC
T ss_pred             ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhccC
Confidence            55678999999999999999999     89999999999863

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3.5e-46  Score=368.44  Aligned_cols=261  Identities=26%  Similarity=0.341  Sum_probs=211.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....   .....+.+|+.+++++      .||||+++++++.   
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~---   75 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL------QHPNIVRLHDSIQ---   75 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEE---
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHc------CCCCcCeEEEEEE---
Confidence            579999999999999999999999999999999987543   2345677899999999      7888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .....++||||+ +++|.+.+...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++....        
T Consensus        76 -~~~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~Nil~~~~~~--------  143 (284)
T 3kk8_A           76 -EESFHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSN-GIVHRNLKPENLLLASKAK--------  143 (284)
T ss_dssp             -CSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEESSSST--------
T ss_pred             -cCCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcCcCCCCHHHEEEecCCC--------
Confidence             557899999999 88998888754  3499999999999999999999997 9999999999999954110        


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (284)
T 3kk8_A          144 --------------------------------------------------------------------------------  143 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                               ...++|+|||.+......  .....||+.|+|||++.+..++.++|||||||++|
T Consensus       144 -------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  198 (284)
T 3kk8_A          144 -------------------------GAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILY  198 (284)
T ss_dssp             -------------------------TCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHH
T ss_pred             -------------------------CCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHH
Confidence                                     245899999999654332  34567999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|..||....      .......+.......|.                                      ......
T Consensus       199 ~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~  234 (284)
T 3kk8_A          199 ILLVGYPPFWDED------QHRLYAQIKAGAYDYPS--------------------------------------PEWDTV  234 (284)
T ss_dssp             HHHHSSCSSCCSS------HHHHHHHHHHTCCCCCT--------------------------------------TTTTTS
T ss_pred             HHHHCCCCCCCCc------hhHHHHHHHhccccCCc--------------------------------------hhhccc
Confidence            9999999996432      12222222111000000                                      011245


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      ++.+.+||.+||+.||.+|||+.|+|+||||+...+.
T Consensus       235 ~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~  271 (284)
T 3kk8_A          235 TPEAKSLIDSMLTVNPKKRITADQALKVPWICNRERV  271 (284)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHTTSHHHHSCCCG
T ss_pred             CHHHHHHHHHHcccChhhCCCHHHHhcCccccCChhH
Confidence            6789999999999999999999999999999876543

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=5.2e-47  Score=400.69  Aligned_cols=252  Identities=27%  Similarity=0.422  Sum_probs=210.9

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|.+.+.||+|+||.||+|++..+|+.||||++....    .....+.+|+.+|+.+      .||||+++++++. 
T Consensus        14 ~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l------~HpnIv~l~~~~~-   86 (476)
T 2y94_A           14 KIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLF------RHPHIIKLYQVIS-   86 (476)
T ss_dssp             EETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTC------CCTTBCCEEEEEE-
T ss_pred             eecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhC------CCCCCCcEEEEEE-
Confidence            3689999999999999999999999999999999987542    2345788999999888      7899999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         ....+||||||| +++|.+++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++.         
T Consensus        87 ---~~~~~~lv~E~~~gg~L~~~l~~--~~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDLkp~NIll~~---------  151 (476)
T 2y94_A           87 ---TPSDIFMVMEYVSGGELFDYICK--NGRLDEKESRRLFQQILSGVDYCHRH-MVVHRDLKPENVLLDA---------  151 (476)
T ss_dssp             ---CSSEEEEEEECCSSEEHHHHTTS--SSSCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCSGGGEEECT---------
T ss_pred             ---ECCEEEEEEeCCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CCCcccccHHHEEEec---------
Confidence               457899999999 8999999863  34599999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (476)
T 2y94_A          152 --------------------------------------------------------------------------------  151 (476)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCC-CCcchhHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKY-STPADLWSFAC  351 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~-~~~~DiWSlG~  351 (530)
                                                 ++.+||+|||++.....  .....+||+.|+|||++.+..+ +.++|||||||
T Consensus       152 ---------------------------~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGv  204 (476)
T 2y94_A          152 ---------------------------HMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGV  204 (476)
T ss_dssp             ---------------------------TCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHH
T ss_pred             ---------------------------CCCeEEEeccchhhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHH
Confidence                                       45799999999976432  2456689999999999998776 68999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|.+||....      .......+.                                          ...+..+
T Consensus       205 il~elltG~~Pf~~~~------~~~~~~~i~------------------------------------------~~~~~~p  236 (476)
T 2y94_A          205 ILYALLCGTLPFDDDH------VPTLFKKIC------------------------------------------DGIFYTP  236 (476)
T ss_dssp             HHHHHHHSSCSSCCSS------SHHHHHHHH------------------------------------------TTCCCCC
T ss_pred             HHHHHhhCCCCCCCCC------HHHHHHHHh------------------------------------------cCCcCCC
Confidence            9999999999996432      122222111                                          1112233


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ...++++.+||.+||+.||.+|||+.|+++||||+..
T Consensus       237 ~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~~~  273 (476)
T 2y94_A          237 QYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQD  273 (476)
T ss_dssp             TTCCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHTT
T ss_pred             ccCCHHHHHHHHHHcCCCchhCcCHHHHHhCHHhhhc
Confidence            4457889999999999999999999999999999865

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=9.9e-47  Score=371.38  Aligned_cols=258  Identities=24%  Similarity=0.405  Sum_probs=190.3

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      -+|+.+  ++|++.+.||+|+||.||+|.+..+++.||||++....    .....+.+|+.+++++      .||||+++
T Consensus         5 ~~g~~~--~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~   76 (278)
T 3cok_A            5 CIGEKI--EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQL------KHPSILEL   76 (278)
T ss_dssp             HHCSSG--GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTB------CCTTBCCE
T ss_pred             cccccc--ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhC------CCCCeEeE
Confidence            356655  68999999999999999999999999999999987542    2246778899999888      78899999


Q ss_pred             cceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccC
Q 045988          110 LDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID  188 (530)
Q Consensus       110 ~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~  188 (530)
                      ++++.    .....|+||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.   
T Consensus        77 ~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nili~~---  147 (278)
T 3cok_A           77 YNYFE----DSNYVYLVLEMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLHSH-GILHRDLTLSNLLLTR---  147 (278)
T ss_dssp             EEEEE----CSSEEEEEEECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHHHT-TEECSSCCGGGEEECT---
T ss_pred             EEEEc----cCCeEEEEEecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEcC---
Confidence            99998    457899999999 88999988743 24589999999999999999999997 9999999999999954   


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (278)
T 3cok_A          148 --------------------------------------------------------------------------------  147 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcch
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                       ++.++|+|||++.....   ......||+.|+|||++.+..++.++|
T Consensus       148 ---------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  194 (278)
T 3cok_A          148 ---------------------------------NMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESD  194 (278)
T ss_dssp             ---------------------------------TCCEEECCCTTCEECC----------------------------CTH
T ss_pred             ---------------------------------CCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhh
Confidence                                             45799999999975432   233457899999999999988999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|+|++|..||........      +.                                          .+..
T Consensus       195 i~slG~il~~l~~g~~p~~~~~~~~~------~~------------------------------------------~~~~  226 (278)
T 3cok_A          195 VWSLGCMFYTLLIGRPPFDTDTVKNT------LN------------------------------------------KVVL  226 (278)
T ss_dssp             HHHHHHHHHHHHHSSCSSCCCSCC-----------------------------------------------------CCS
T ss_pred             HHHHHHHHHHHHhCCCCCCChhHHHH------HH------------------------------------------HHhh
Confidence            99999999999999999965432110      00                                          0000


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ..+..+...+.++.+||.+||+.||.+|||+.++|+||||....
T Consensus       227 ~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  270 (278)
T 3cok_A          227 ADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRNS  270 (278)
T ss_dssp             SCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSTTTC---
T ss_pred             cccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhcCccccCCC
Confidence            11223345678899999999999999999999999999998644

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=3.6e-46  Score=381.77  Aligned_cols=286  Identities=23%  Similarity=0.367  Sum_probs=216.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc------------chHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH------------YTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~------------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      .++|++.+.||+|+||.||+|.+.. |+.||||++.....            ....+.+|+++++++      .||||++
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~   93 (362)
T 3pg1_A           21 QSPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHF------HHPNILG   93 (362)
T ss_dssp             TCSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHC------CCTTBCC
T ss_pred             ccceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhC------CCcCccc
Confidence            5799999999999999999999865 89999998765321            126788999999999      7889999


Q ss_pred             ecceeeecC-CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          109 LLDHFKHSG-PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       109 ~~~~~~~~~-~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      ++++|.... .....+|+||||++++|.+++... ...+++..+..++.||+.||.|||++ ||+||||||+|||++.  
T Consensus        94 ~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~NIl~~~--  169 (362)
T 3pg1_A           94 LRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQ-RIVISPQHIQYFMYHILLGLHVLHEA-GVVHRDLHPGNILLAD--  169 (362)
T ss_dssp             CSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT--
T ss_pred             eeeeEEeccCCCcceEEEEEccCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC-cCEecCCChHHEEEcC--
Confidence            999987643 244689999999999999988743 33599999999999999999999997 9999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (362)
T 3pg1_A          170 --------------------------------------------------------------------------------  169 (362)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcC-CCCCCcc
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLG-SKYSTPA  344 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~-~~~~~~~  344 (530)
                                                        ++.++|+|||++....  .......||+.|+|||++.+ ..++.++
T Consensus       170 ----------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~  215 (362)
T 3pg1_A          170 ----------------------------------NNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLV  215 (362)
T ss_dssp             ----------------------------------TCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHH
T ss_pred             ----------------------------------CCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHh
Confidence                                              4569999999997532  23445678999999999987 6799999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--cccccccCccccchhcccCCchh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      |||||||++|+|++|..||.+..      ....+..+....|.++..........  ..++....        ...+.. 
T Consensus       216 DiwslG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-  280 (362)
T 3pg1_A          216 DMWSAGCVMAEMFNRKALFRGST------FYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSL--------SNVPAR-  280 (362)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCC--------CCCCCC-
T ss_pred             HHHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhc--------ccCChh-
Confidence            99999999999999999997544      66788888888887765433211100  00000000        000000 


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                         .........++.+.+||.+||++||.+|||+.|+|+||||+...
T Consensus       281 ---~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  324 (362)
T 3pg1_A          281 ---AWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLF  324 (362)
T ss_dssp             ---CHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTC
T ss_pred             ---hHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCchhhhcc
Confidence               00112234567899999999999999999999999999999764

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=1.8e-46  Score=401.24  Aligned_cols=273  Identities=28%  Similarity=0.422  Sum_probs=214.5

Q ss_pred             CCCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--------------cchHHHHHHHH
Q 045988           25 YRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--------------HYTEAALDEIK   90 (530)
Q Consensus        25 ~~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--------------~~~~~~~~Ei~   90 (530)
                      ..+|.|.+...|. + .++|.++++||+|+||+||+|+++.+++.||||++....              ...+.+.+|+.
T Consensus        21 ~~~~~~~~~~~~~-i-~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~   98 (504)
T 3q5i_A           21 INPGMYVRKKEGK-I-GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEIS   98 (504)
T ss_dssp             CCGGGGCCEECSC-G-GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHH
T ss_pred             echhheeeccCCC-c-ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHH
Confidence            3444454444443 4 578999999999999999999999999999999987643              23467889999


Q ss_pred             HHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC
Q 045988           91 ILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHREL  169 (530)
Q Consensus        91 il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~  169 (530)
                      +|++|      .||||++++++|.    +...+||||||| +++|.+++...  ..+++..+..++.||+.||+|||++ 
T Consensus        99 ~l~~l------~hpniv~~~~~~~----~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-  165 (504)
T 3q5i_A           99 LLKSL------DHPNIIKLFDVFE----DKKYFYLVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHKH-  165 (504)
T ss_dssp             HHHTC------CCTTBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHhC------CCCCCCeEEEEEE----cCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            99999      7889999999998    557999999999 88999988653  4599999999999999999999997 


Q ss_pred             CceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCC
Q 045988          170 SIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSP  249 (530)
Q Consensus       170 gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (530)
                      ||+||||||+|||++....                                                             
T Consensus       166 ~ivH~Dlkp~Nil~~~~~~-------------------------------------------------------------  184 (504)
T 3q5i_A          166 NIVHRDIKPENILLENKNS-------------------------------------------------------------  184 (504)
T ss_dssp             TEECSCCSGGGEEESSTTC-------------------------------------------------------------
T ss_pred             CeEeCCCcHHHEEEecCCC-------------------------------------------------------------
Confidence            9999999999999954110                                                             


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCC
Q 045988          250 DHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTR  327 (530)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~  327 (530)
                                                                          ...+||+|||++.....  .....+||+
T Consensus       185 ----------------------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~gt~  212 (504)
T 3q5i_A          185 ----------------------------------------------------LLNIKIVDFGLSSFFSKDYKLRDRLGTA  212 (504)
T ss_dssp             ----------------------------------------------------CSSEEECCCTTCEECCTTSCBCCCCSCT
T ss_pred             ----------------------------------------------------CccEEEEECCCCEEcCCCCccccccCCc
Confidence                                                                23699999999976433  345678999


Q ss_pred             CccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccC
Q 045988          328 QYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG  407 (530)
Q Consensus       328 ~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  407 (530)
                      .|+|||++.+ .|+.++|||||||++|+|++|.+||.+..      ....+..+....-..+.                 
T Consensus       213 ~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~-----------------  268 (504)
T 3q5i_A          213 YYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQN------DQDIIKKVEKGKYYFDF-----------------  268 (504)
T ss_dssp             TTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHCCCCCCH-----------------
T ss_pred             CCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHcCCCCCCc-----------------
Confidence            9999999875 69999999999999999999999997543      22222222211000000                 


Q ss_pred             ccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                                           ..+...++++.+||.+||++||.+|||+.|+|+||||+....
T Consensus       269 ---------------------~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~~  310 (504)
T 3q5i_A          269 ---------------------NDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKYAN  310 (504)
T ss_dssp             ---------------------HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHTCC
T ss_pred             ---------------------cccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCHhhhhchh
Confidence                                 001235688999999999999999999999999999986543

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=2.7e-46  Score=381.17  Aligned_cols=259  Identities=27%  Similarity=0.370  Sum_probs=195.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.+.||+|+||+||+|++..+++.||||+++... ..+.+.+|+.+|+++      .||||++++++|.    ..
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l------~h~niv~~~~~~~----~~  120 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-DKKIVRTEIGVLLRL------SHPNIIKLKEIFE----TP  120 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------CHHHHHC------CCTTBCCEEEEEE----CS
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-hHHHHHHHHHHHHhC------CCCCCcceeeeEe----cC
Confidence            578999999999999999999999999999999988654 245678899999999      7888999999998    45


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...++||||+ +++|.+++..  ...+++..+..++.||+.||.|||++ ||+||||||+|||++...            
T Consensus       121 ~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dikp~NIll~~~~------------  185 (349)
T 2w4o_A          121 TEISLVLELVTGGELFDRIVE--KGYYSERDAADAVKQILEAVAYLHEN-GIVHRDLKPENLLYATPA------------  185 (349)
T ss_dssp             SEEEEEECCCCSCBHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEESSSS------------
T ss_pred             CeEEEEEEeCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCcccEEEecCC------------
Confidence            7899999999 8899998864  34489999999999999999999997 999999999999995310            


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (349)
T 2w4o_A          186 --------------------------------------------------------------------------------  185 (349)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                           .+..+||+|||++......  ....+||+.|+|||++.+..++.++|||||||++|+|+
T Consensus       186 ---------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  244 (349)
T 2w4o_A          186 ---------------------PDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILL  244 (349)
T ss_dssp             ---------------------TTCCEEECCCC----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------CCCCEEEccCccccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHH
Confidence                                 0456999999999764332  34567999999999999989999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|..||.....     ....+..+.......+                                      .......+.+
T Consensus       245 ~g~~pf~~~~~-----~~~~~~~i~~~~~~~~--------------------------------------~~~~~~~~~~  281 (349)
T 2w4o_A          245 CGFEPFYDERG-----DQFMFRRILNCEYYFI--------------------------------------SPWWDEVSLN  281 (349)
T ss_dssp             HSSCTTCCTTC-----HHHHHHHHHTTCCCCC--------------------------------------TTTTTTSCHH
T ss_pred             hCCCCCCCCcc-----cHHHHHHHHhCCCccC--------------------------------------CchhhhCCHH
Confidence            99999964321     1111221111000000                                      0112345678


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +.+||.+||..||.+|||+.|+|+||||+...
T Consensus       282 ~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  313 (349)
T 2w4o_A          282 AKDLVRKLIVLDPKKRLTTFQALQHPWVTGKA  313 (349)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHHSTTTTSTT
T ss_pred             HHHHHHHHccCChhhCcCHHHHhcCcccCCCc
Confidence            99999999999999999999999999998644

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-46  Score=377.25  Aligned_cols=284  Identities=23%  Similarity=0.330  Sum_probs=217.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+++|++.++||+|+||+||+|++..+++.||||++....  ...+.+.+|+++|+++      .||||+++++++... 
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~-   79 (319)
T 4euu_A            7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL------NHKNIVKLFAIEEET-   79 (319)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHC------CCTTBCCEEEEEECT-
T ss_pred             CCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhc------CCCCcceEEEEeecC-
Confidence            3689999999999999999999999999999999987543  3346678999999999      788999999998854 


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYR-GVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~-~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                       .....||||||+ +++|.+++...... .+++..+..++.||+.||+|||++ ||+||||||+|||+....+       
T Consensus        80 -~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~~~~~-------  150 (319)
T 4euu_A           80 -TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN-GIVHRNIKPGNIMRVIGED-------  150 (319)
T ss_dssp             -TTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEECTT-------
T ss_pred             -CCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHEEEeccCC-------
Confidence             345889999999 89999999764432 399999999999999999999997 9999999999999843110       


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (319)
T 4euu_A          151 --------------------------------------------------------------------------------  150 (319)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhc--------CCCCCCcch
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLL--------GSKYSTPAD  345 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~--------~~~~~~~~D  345 (530)
                                               ....+||+|||++.....  ......||+.|+|||++.        +..++.++|
T Consensus       151 -------------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~D  205 (319)
T 4euu_A          151 -------------------------GQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVD  205 (319)
T ss_dssp             -------------------------SCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHH
T ss_pred             -------------------------CCceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHH
Confidence                                     045699999999976432  345567999999999986        567899999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCc-ccccccccCccccchhcccCCchhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRY-SRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      ||||||++|+|++|..||.+...     .......+..++...|...+..... ....+               .+....
T Consensus       206 iwslG~il~el~~g~~pf~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---------------~~~~~~  265 (319)
T 4euu_A          206 LWSIGVTFYHAATGSLPFRPFEG-----PRRNKEVMYKIITGKPSGAISGVQKAENGPI---------------DWSGDM  265 (319)
T ss_dssp             HHHHHHHHHHHHHSSCSEECTTC-----GGGCHHHHHHHHHHCCTTCCEEEECSTTCCE---------------EEESSC
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCc-----cchhHHHHHHHhcCCCcccchhhhcccCCcc---------------ccCccC
Confidence            99999999999999999965432     2223334444444333322211100 00000               001111


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCC
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW  464 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~  464 (530)
                      .....++...+..+.+||.+||++||.+|||++|+|+||=
T Consensus       266 ~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~  305 (319)
T 4euu_A          266 PVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS  305 (319)
T ss_dssp             CTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred             CcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccH
Confidence            1122455677889999999999999999999999999973

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1.9e-46  Score=378.31  Aligned_cols=253  Identities=20%  Similarity=0.302  Sum_probs=200.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC-
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP-  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~-  118 (530)
                      ++|++.+.||+|+||.||+|++..+|+.||||+++...  ...+.+.+|+.+|++|      .||||++++++|..... 
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~~~~~   79 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL------EHPGIVRYFNAWLETPPE   79 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSC------CCTTBCCEEEEEEECCSC
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhC------CCCCEeeEEEEEEEeccc
Confidence            68999999999999999999999999999999987432  3456788999999998      78999999999865421 


Q ss_pred             ----------------------------------------------------CCcEEEEEEecc-CcCHHHHHHhhcc-C
Q 045988          119 ----------------------------------------------------NGQHVCMVFEYL-GENLLTLIKYADY-R  144 (530)
Q Consensus       119 ----------------------------------------------------~~~~~~lVmE~~-~~~L~~~i~~~~~-~  144 (530)
                                                                          ...++++||||| +++|.+++..... .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~  159 (332)
T 3qd2_B           80 KWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLE  159 (332)
T ss_dssp             HHHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGG
T ss_pred             hhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCcc
Confidence                                                                123589999999 8899999975432 2


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHH
Q 045988          145 GVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKA  224 (530)
Q Consensus       145 ~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (530)
                      ...+..+..++.||+.||+|||++ ||+||||||+|||++.                                       
T Consensus       160 ~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~---------------------------------------  199 (332)
T 3qd2_B          160 DREHGVCLHIFIQIAEAVEFLHSK-GLMHRDLKPSNIFFTM---------------------------------------  199 (332)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECT---------------------------------------
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhC-CeeecCCCcccEEEeC---------------------------------------
Confidence            256677999999999999999997 9999999999999954                                       


Q ss_pred             HhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccc
Q 045988          225 KKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLK  304 (530)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (530)
                                                                                                   ++.
T Consensus       200 -----------------------------------------------------------------------------~~~  202 (332)
T 3qd2_B          200 -----------------------------------------------------------------------------DDV  202 (332)
T ss_dssp             -----------------------------------------------------------------------------TCC
T ss_pred             -----------------------------------------------------------------------------CCC
Confidence                                                                                         457


Q ss_pred             eEEecCCcccccccc---------------cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCC
Q 045988          305 CKLVDFGNACWTYKQ---------------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGD  369 (530)
Q Consensus       305 vkL~DfG~a~~~~~~---------------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~  369 (530)
                      +||+|||++......               ....+||+.|+|||++.+..++.++|||||||++|+|++|..|+.     
T Consensus       203 ~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~-----  277 (332)
T 3qd2_B          203 VKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM-----  277 (332)
T ss_dssp             EEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH-----
T ss_pred             EEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChh-----
Confidence            999999999754322               244579999999999999999999999999999999999877652     


Q ss_pred             CCCCChHHHHHHHHHh-CCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCc
Q 045988          370 NYDRDEDHLALMMELL-GMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDF  448 (530)
Q Consensus       370 ~~~~~~~~l~~i~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~  448 (530)
                            .....+.... +..|.                                       .....++++.+||.+||..
T Consensus       278 ------~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~li~~~l~~  312 (332)
T 3qd2_B          278 ------ERVRIITDVRNLKFPL---------------------------------------LFTQKYPQEHMMVQDMLSP  312 (332)
T ss_dssp             ------HHHHHHHHHHTTCCCH---------------------------------------HHHHHCHHHHHHHHHHHCS
T ss_pred             ------HHHHHHHHhhccCCCc---------------------------------------ccccCChhHHHHHHHHccC
Confidence                  1111111111 11110                                       0123356789999999999


Q ss_pred             CCCCCcCHHHHhcCCCCCC
Q 045988          449 VPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       449 dP~~Rpta~elL~hp~f~~  467 (530)
                      ||.+|||+.|+|+||||+.
T Consensus       313 ~p~~Rps~~~~l~~~~f~~  331 (332)
T 3qd2_B          313 SPTERPEATDIIENAIFEN  331 (332)
T ss_dssp             SGGGSCCHHHHHHSTTCCC
T ss_pred             CCCcCCCHHHHhhchhhhc
Confidence            9999999999999999984

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=9.6e-47  Score=415.49  Aligned_cols=254  Identities=21%  Similarity=0.311  Sum_probs=213.6

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +..++|+++++||+|+||.||+|+++.+++.||||++++.    ....+....|..+|..+.     .||+|++++++|.
T Consensus       338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~-----~~~~i~~l~~~~~  412 (674)
T 3pfq_A          338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPG-----KPPFLTQLHSCFQ  412 (674)
T ss_dssp             --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTT-----CCTTBCCEEEECB
T ss_pred             ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhcc-----CCCeEEEEEEEEE
Confidence            4567899999999999999999999999999999998764    234566778888887764     6899999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          +...+||||||+ +++|..++...  ..+++..++.|+.||+.||+|||++ |||||||||+||||+.        
T Consensus       413 ----~~~~~~lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-gIiHrDLKp~NILl~~--------  477 (674)
T 3pfq_A          413 ----TMDRLYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSK-GIIYRDLKLDNVMLDS--------  477 (674)
T ss_dssp             ----CSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-SEECCCCCSTTEEECS--------
T ss_pred             ----eCCEEEEEEeCcCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEeccCChhhEEEcC--------
Confidence                457899999999 89999999754  3599999999999999999999997 9999999999999965        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       478 --------------------------------------------------------------------------------  477 (674)
T 3pfq_A          478 --------------------------------------------------------------------------------  477 (674)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccc---ccccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWT---YKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                  ++.+||+|||+|...   .......+||+.|+|||++.+..|+.++||||||
T Consensus       478 ----------------------------~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlG  529 (674)
T 3pfq_A          478 ----------------------------EGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFG  529 (674)
T ss_dssp             ----------------------------SSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHH
T ss_pred             ----------------------------CCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechH
Confidence                                        567999999999752   2234567899999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |+||||++|.+||.+.+      ..+....                                          +....+.+
T Consensus       530 vilyelltG~~Pf~~~~------~~~~~~~------------------------------------------i~~~~~~~  561 (674)
T 3pfq_A          530 VLLYEMLAGQAPFEGED------EDELFQS------------------------------------------IMEHNVAY  561 (674)
T ss_dssp             HHHHHHHHSSCSSCCSS------HHHHHHH------------------------------------------HHSSCCCC
T ss_pred             HHHHHHHcCCCCCCCCC------HHHHHHH------------------------------------------HHhCCCCC
Confidence            99999999999996532      1122221                                          22223345


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCH-----HHHhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTA-----AQCLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta-----~elL~hp~f~~~  468 (530)
                      +...++++.+||.+||+.||.+||++     .||++||||+.-
T Consensus       562 p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~i  604 (674)
T 3pfq_A          562 PKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI  604 (674)
T ss_dssp             CTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSSC
T ss_pred             CccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCccccCC
Confidence            56678899999999999999999997     999999999864

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=6.5e-47  Score=373.00  Aligned_cols=254  Identities=24%  Similarity=0.417  Sum_probs=208.6

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|++.+.||+|+||+||+|.+..+++.||+|++....    .....+.+|+.+++++      .||||+++++++. 
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~-   79 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL------RHPNILRLYGYFH-   79 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTC------CCTTBCCEEEEEE-
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcC------CCCCCcchhheEe-
Confidence            4578999999999999999999999999999999986542    2345678899999888      7889999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .....++||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.         
T Consensus        80 ---~~~~~~lv~e~~~~~~l~~~l~~~--~~~~~~~~~~~~~qi~~~l~~LH~~-~i~H~dlkp~Nili~~---------  144 (279)
T 3fdn_A           80 ---DATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSK-RVIHRDIKPENLLLGS---------  144 (279)
T ss_dssp             ---CSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTT-TCEECCCCGGGEEECT---------
T ss_pred             ---cCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecccCChHhEEEcC---------
Confidence               457899999999 78999988754  3499999999999999999999997 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (279)
T 3fdn_A          145 --------------------------------------------------------------------------------  144 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                                 ++.++|+|||++..... ......||+.|+|||++.+..++.++|||||||++
T Consensus       145 ---------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  197 (279)
T 3fdn_A          145 ---------------------------AGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLC  197 (279)
T ss_dssp             ---------------------------TSCEEECSCCEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHH
T ss_pred             ---------------------------CCCEEEEeccccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHH
Confidence                                       46799999999865432 23556789999999999998999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|..||....      .......+.                                          .....++..
T Consensus       198 ~~l~~g~~p~~~~~------~~~~~~~~~------------------------------------------~~~~~~~~~  229 (279)
T 3fdn_A          198 YEFLVGKPPFEANT------YQETYKRIS------------------------------------------RVEFTFPDF  229 (279)
T ss_dssp             HHHHHSSCTTCCSS------HHHHHHHHH------------------------------------------HTCCCCCTT
T ss_pred             HHHHHCCCCCCCCc------HHHHHHHHH------------------------------------------hCCCCCCCc
Confidence            99999999996432      111222111                                          112233445


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .++.+.+||.+||..||.+|||+.|+|+||||+..+.
T Consensus       230 ~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~~~~  266 (279)
T 3fdn_A          230 VTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSS  266 (279)
T ss_dssp             SCHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHHHCS
T ss_pred             CCHHHHHHHHHHhccChhhCCCHHHHhhCccccCCcc
Confidence            6788999999999999999999999999999987554

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.9e-47  Score=383.32  Aligned_cols=246  Identities=26%  Similarity=0.430  Sum_probs=205.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---------chHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---------YTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      .++|++.++||+|+||+||+|++..+++.||||+++....         ....+.+|+.+|+++      .||||+++++
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~Iv~~~~   96 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRV------EHANIIKVLD   96 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTC------CCTTBCCEEE
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhC------CCCCEeeEEE
Confidence            4689999999999999999999999999999999876531         234567899999998      7889999999


Q ss_pred             eeeecCCCCcEEEEEEecc-Cc-CHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~-~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      +|.    ....+++||||+ ++ +|..++..  ...+++..+..|+.||+.||+|||++ ||+||||||+|||++.    
T Consensus        97 ~~~----~~~~~~lv~e~~~~g~~l~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~~----  165 (335)
T 3dls_A           97 IFE----NQGFFQLVMEKHGSGLDLFAFIDR--HPRLDEPLASYIFRQLVSAVGYLRLK-DIIHRDIKDENIVIAE----  165 (335)
T ss_dssp             EEE----CSSEEEEEEECCTTSCBHHHHHHT--CCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT----
T ss_pred             EEe----eCCEEEEEEEeCCCCccHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC-CeEEeccCHHHEEEcC----
Confidence            998    557899999999 44 89998864  33599999999999999999999997 9999999999999954    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (335)
T 3dls_A          166 --------------------------------------------------------------------------------  165 (335)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCC-CCcchh
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKY-STPADL  346 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~-~~~~Di  346 (530)
                                                      ++.+||+|||++......  ....+||+.|+|||++.+..+ +.++||
T Consensus       166 --------------------------------~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di  213 (335)
T 3dls_A          166 --------------------------------DFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEM  213 (335)
T ss_dssp             --------------------------------TSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHH
T ss_pred             --------------------------------CCcEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccc
Confidence                                            467999999999764322  344579999999999998876 789999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|..||....                                                      .....
T Consensus       214 wslG~il~el~~g~~pf~~~~------------------------------------------------------~~~~~  239 (335)
T 3dls_A          214 WSLGVTLYTLVFEENPFCELE------------------------------------------------------ETVEA  239 (335)
T ss_dssp             HHHHHHHHHHHHSSCSCSSGG------------------------------------------------------GGTTT
T ss_pred             hhHHHHHHHHHhCCCchhhHH------------------------------------------------------HHHhh
Confidence            999999999999999995311                                                      00001


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ....+...++++.+||.+||..||.+|||+.|+|+||||+...
T Consensus       240 ~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~hp~~~~~~  282 (335)
T 3dls_A          240 AIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQPV  282 (335)
T ss_dssp             CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHCTTTTCCC
T ss_pred             ccCCCcccCHHHHHHHHHHccCChhhCcCHHHHhcCccccCCc
Confidence            1122334568899999999999999999999999999998643

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.8e-46  Score=401.23  Aligned_cols=259  Identities=26%  Similarity=0.358  Sum_probs=214.3

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +..++|.+.+.||+|+||.||+|+++.+|+.||||++.+..    .....+.+|+.+|+++      +||||++++++|.
T Consensus       182 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l------~hp~Iv~l~~~~~  255 (543)
T 3c4z_A          182 MGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKV------HSRFIVSLAYAFE  255 (543)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             CChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhc------CCCCEeeEEEEEe
Confidence            34578999999999999999999999999999999987543    2346678999999998      7889999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                          ....+||||||+ +++|..++....  ...+++..++.|+.||+.||.|||++ ||+||||||+||||+.      
T Consensus       256 ----~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~-gIvHrDLKP~NILl~~------  324 (543)
T 3c4z_A          256 ----TKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR-NIIYRDLKPENVLLDD------  324 (543)
T ss_dssp             ----CSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECT------
T ss_pred             ----eCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc-CCcccCCChHHEEEeC------
Confidence                457899999999 899999987543  34599999999999999999999997 9999999999999955      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (543)
T 3c4z_A          325 --------------------------------------------------------------------------------  324 (543)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                    ++.+||+|||++......   ....+||+.|+|||++.+..|+.++||||
T Consensus       325 ------------------------------~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwS  374 (543)
T 3c4z_A          325 ------------------------------DGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFA  374 (543)
T ss_dssp             ------------------------------TSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHH
T ss_pred             ------------------------------CCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCc
Confidence                                          567999999999764322   23458999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|.+||.+.....   ....+.                                         ..+.....
T Consensus       375 lGvilyelltG~~PF~~~~~~~---~~~~~~-----------------------------------------~~i~~~~~  410 (543)
T 3c4z_A          375 LGVTLYEMIAARGPFRARGEKV---ENKELK-----------------------------------------QRVLEQAV  410 (543)
T ss_dssp             HHHHHHHHHHSSCSSCCTTCCC---CHHHHH-----------------------------------------HHHHHCCC
T ss_pred             chHHHHHHHhCCCCCCCCccch---hHHHHH-----------------------------------------HHHhhccc
Confidence            9999999999999997543111   111111                                         11112223


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      .++...++.+.+||.+||+.||.+||+     ++++++||||+.-
T Consensus       411 ~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i  455 (543)
T 3c4z_A          411 TYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDI  455 (543)
T ss_dssp             CCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTC
T ss_pred             CCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCccccCC
Confidence            345567789999999999999999995     5999999999863

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=2e-46  Score=399.93  Aligned_cols=257  Identities=30%  Similarity=0.428  Sum_probs=205.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|+++++||+|+||+||+|+++.++..||||++....   .....+.+|+.+|+.+      .|||||+++++|.   
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~---  106 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLL------DHPNIMKLYDFFE---  106 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTC------CCTTBCCEEEEEE---
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhC------CCCCCCeEEEEEE---
Confidence            358999999999999999999999999999999987642   3356788999999988      7899999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ....+|+||||| +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++....        
T Consensus       107 -~~~~~~lv~e~~~~g~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~~~~~--------  174 (494)
T 3lij_A          107 -DKRNYYLVMECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLHKH-NIVHRDLKPENLLLESKEK--------  174 (494)
T ss_dssp             -CSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCSST--------
T ss_pred             -eCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCChhhEEEeCCCC--------
Confidence             457899999999 88999988644  4499999999999999999999997 9999999999999954110        


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (494)
T 3lij_A          175 --------------------------------------------------------------------------------  174 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                               ...+||+|||++....  ......+||+.|+|||++.+ .|+.++|||||||++|
T Consensus       175 -------------------------~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~DiwslG~il~  228 (494)
T 3lij_A          175 -------------------------DALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILF  228 (494)
T ss_dssp             -------------------------TCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHH
T ss_pred             -------------------------CCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHcc-cCCCchhHHHHHHHHH
Confidence                                     3459999999997643  23456789999999999864 6999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||.+.+      ....+..+.......+.                                      ......
T Consensus       229 ~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------------~~~~~~  264 (494)
T 3lij_A          229 ILLAGYPPFGGQT------DQEILRKVEKGKYTFDS--------------------------------------PEWKNV  264 (494)
T ss_dssp             HHHHSSCSSCCSS------HHHHHHHHHHTCCCCCS--------------------------------------GGGTTS
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHhCCCCCCc--------------------------------------hhcccC
Confidence            9999999996543      22222222211100000                                      011245


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ++.+.+||.+||++||.+|||+.|+|+||||+..
T Consensus       265 s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~  298 (494)
T 3lij_A          265 SEGAKDLIKQMLQFDSQRRISAQQALEHPWIKEM  298 (494)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHHCCCChhhCccHHHHhcCcccccC
Confidence            6789999999999999999999999999999763

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=1.4e-46  Score=379.64  Aligned_cols=267  Identities=27%  Similarity=0.389  Sum_probs=212.3

Q ss_pred             cCcEeeCCCEEEE-EEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           35 MGDTFKNGRYVVQ-SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        35 ~g~~~~~~~y~i~-~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .++.| .++|.+. ++||+|+||+||+|++..+++.||||++....   .....+.+|+.+++.+.     .||||++++
T Consensus        22 ~~~~~-~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~-----~~~~iv~~~   95 (327)
T 3lm5_A           22 SMENF-NNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAK-----SCPRVINLH   95 (327)
T ss_dssp             CHHHH-HHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTT-----TCTTBCCEE
T ss_pred             HHHhh-hhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhcc-----CCCCEEEEE
Confidence            34555 5789988 89999999999999999999999999987643   33567889999999985     579999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ++|.    ....+|+||||+ +++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||++...  
T Consensus        96 ~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~-givH~Dikp~NIl~~~~~--  168 (327)
T 3lm5_A           96 EVYE----NTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN-NIVHLDLKPQNILLSSIY--  168 (327)
T ss_dssp             EEEE----CSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEESCBT--
T ss_pred             EEEE----eCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-CeecCcCChHHEEEecCC--
Confidence            9998    457899999999 88999888654446699999999999999999999997 999999999999995410  


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (327)
T 3lm5_A          169 --------------------------------------------------------------------------------  168 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                     ..+.++|+|||++......  .....||+.|+|||++.+..++.++|||
T Consensus       169 -------------------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diw  217 (327)
T 3lm5_A          169 -------------------------------PLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMW  217 (327)
T ss_dssp             -------------------------------TBCCEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHH
T ss_pred             -------------------------------CCCcEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHH
Confidence                                           0356999999999764332  3456799999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|..||.+..      .......+.......+.                                     
T Consensus       218 slG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~-------------------------------------  254 (327)
T 3lm5_A          218 NIGIIAYMLLTHTSPFVGED------NQETYLNISQVNVDYSE-------------------------------------  254 (327)
T ss_dssp             HHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCCT-------------------------------------
T ss_pred             HHHHHHHHHHhCCCCCCCCC------chHHHHHHHhcccccCc-------------------------------------
Confidence            99999999999999996433      22222222222111111                                     


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                       ......++.+.+||.+||+.||.+|||++|+|+||||+...
T Consensus       255 -~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~~~~  295 (327)
T 3lm5_A          255 -ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQWD  295 (327)
T ss_dssp             -TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGCCCC
T ss_pred             -hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhhcccc
Confidence             11234567899999999999999999999999999998653

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=3.3e-46  Score=374.61  Aligned_cols=265  Identities=26%  Similarity=0.400  Sum_probs=203.2

Q ss_pred             CCCEEEE-EEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQ-SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~-~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|++. +.||+|+||+||+|.+..+++.||||++.... .....+.+|+.+|.++.     .||||+++++++..   
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~-----~h~~i~~~~~~~~~---   82 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQ-----GHRNVLELIEFFEE---   82 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTC-----CCTTBCCEEEEEEE---
T ss_pred             ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhc-----CCCCeeeEEEEEee---
Confidence            5789995 78999999999999999999999999987653 34567889999998863     68999999999984   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ...+|+||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++....         
T Consensus        83 -~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~~~~~---------  149 (316)
T 2ac3_A           83 -EDRFYLVFEKMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHNK-GIAHRDLKPENILCEHPNQ---------  149 (316)
T ss_dssp             -TTEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEESCSSS---------
T ss_pred             -CCEEEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC-CceeCCCCHHHEEEccCCC---------
Confidence             47899999999 79999999754  3599999999999999999999997 9999999999999954110         


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (316)
T 2ac3_A          150 --------------------------------------------------------------------------------  149 (316)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----------ccCCCCCCCCccCChhhcC-----CCCCC
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----------QFTNDIQTRQYRCPEVLLG-----SKYST  342 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----------~~~~~~gt~~y~aPE~l~~-----~~~~~  342 (530)
                                              ...+||+|||++.....          .....+||+.|+|||++.+     ..++.
T Consensus       150 ------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~  205 (316)
T 2ac3_A          150 ------------------------VSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDK  205 (316)
T ss_dssp             ------------------------SCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTT
T ss_pred             ------------------------cCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCc
Confidence                                    23489999999864321          1234569999999999975     45899


Q ss_pred             cchhHHHHHHHHHHHhCCCCCCCCCCCCCCCCh-----HHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          343 PADLWSFACICFELATGDVLFDPHSGDNYDRDE-----DHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       343 ~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~-----~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                      ++|||||||++|+|++|..||.+..........     .....+..                                  
T Consensus       206 ~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------  251 (316)
T 2ac3_A          206 RCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFE----------------------------------  251 (316)
T ss_dssp             THHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHH----------------------------------
T ss_pred             ccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHH----------------------------------
Confidence            999999999999999999999765432211000     00000000                                  


Q ss_pred             CCchhhhhhhccCC----hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          418 WPLNKVLIEKYDFS----EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       418 ~~~~~~~~~~~~~~----~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                          .+....+.++    ...+..+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       252 ----~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~  302 (316)
T 2ac3_A          252 ----SIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGC  302 (316)
T ss_dssp             ----HHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTTCC--
T ss_pred             ----HHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcChhhcCC
Confidence                0011111111    2356789999999999999999999999999999864

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=2.8e-46  Score=386.75  Aligned_cols=257  Identities=23%  Similarity=0.392  Sum_probs=204.2

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ...+|++.++||+|+||+||+|.+.. ++.||||++....   .....+.+|+.+|++|.+    .||||+++++++.  
T Consensus        54 ~~~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~----~~~~iv~~~~~~~--  126 (390)
T 2zmd_A           54 KGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQ----HSDKIIRLYDYEI--  126 (390)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT----TCTTBCCEEEEEE--
T ss_pred             cCCceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHccc----CCCeEEEEEEEEe--
Confidence            35679999999999999999999765 8999999986543   234677899999999964    4789999999988  


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ....+|||||+++++|.+++...  ..+++..+..|+.||+.||.|||++ ||+||||||+|||++            
T Consensus       127 --~~~~~~lv~E~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~-~ivHrDlkp~NIll~------------  189 (390)
T 2zmd_A          127 --TDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIV------------  189 (390)
T ss_dssp             --CSSEEEEEEECCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHTT-TCCCCCCCGGGEEES------------
T ss_pred             --cCCEEEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHEEEE------------
Confidence              44789999997799999999754  3589999999999999999999997 999999999999993            


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (390)
T 2zmd_A          190 --------------------------------------------------------------------------------  189 (390)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcC-----------CCC
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLG-----------SKY  340 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~-----------~~~  340 (530)
                                               ++.+||+|||++......     ....+||+.|+|||++.+           ..|
T Consensus       190 -------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~  244 (390)
T 2zmd_A          190 -------------------------DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKI  244 (390)
T ss_dssp             -------------------------SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------C
T ss_pred             -------------------------CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCC
Confidence                                     245999999999754322     345679999999999975           368


Q ss_pred             CCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          341 STPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       341 ~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      +.++|||||||++|+|++|.+||....        .....+..++....                               
T Consensus       245 ~~~~DiwSlGvil~ell~G~~Pf~~~~--------~~~~~~~~~~~~~~-------------------------------  285 (390)
T 2zmd_A          245 SPKSDVWSLGCILYYMTYGKTPFQQII--------NQISKLHAIIDPNH-------------------------------  285 (390)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTTTCC--------CHHHHHHHHHCTTS-------------------------------
T ss_pred             CChhhHHHHHHHHHHHHHCCCcchhhh--------HHHHHHHHHhCccc-------------------------------
Confidence            899999999999999999999995422        11222222211100                               


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                            ...++...+.++.+||.+||..||.+|||+.|+|+||||+....
T Consensus       286 ------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~~~~~~~  329 (390)
T 2zmd_A          286 ------EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH  329 (390)
T ss_dssp             ------CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCC-
T ss_pred             ------cCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhCcCccccCc
Confidence                  01122334578999999999999999999999999999986543

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.5e-46  Score=371.45  Aligned_cols=259  Identities=22%  Similarity=0.390  Sum_probs=214.0

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +..++|++.+.||+|+||.||+|.+..+++.||||++....    .....+.+|+.+++++      .||||+++++++.
T Consensus        11 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~   84 (284)
T 2vgo_A           11 FTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL------RHPNILRMYNYFH   84 (284)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC------CCTTBCCEEEEEE
T ss_pred             hhhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcC------CCCCEeeEEEEEE
Confidence            34579999999999999999999999999999999986542    2345678899999998      7889999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                          .....|+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++.        
T Consensus        85 ----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~~--------  149 (284)
T 2vgo_A           85 ----DRKRIYLMLEFAPRGELYKELQKH--GRFDEQRSATFMEELADALHYCHER-KVIHRDIKPENLLMGY--------  149 (284)
T ss_dssp             ----CSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCSGGGEEECT--------
T ss_pred             ----cCCEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCHHHEEEcC--------
Confidence                457899999999 78999998754  3499999999999999999999997 9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (284)
T 2vgo_A          150 --------------------------------------------------------------------------------  149 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                                  ++.++|+|||++..... ......||+.|+|||++.+..++.++|||||||+
T Consensus       150 ----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  201 (284)
T 2vgo_A          150 ----------------------------KGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVL  201 (284)
T ss_dssp             ----------------------------TCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHH
T ss_pred             ----------------------------CCCEEEecccccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHH
Confidence                                        45699999999865432 2345679999999999999899999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|..||....      .......+.                                          .....++.
T Consensus       202 l~~l~~g~~pf~~~~------~~~~~~~~~------------------------------------------~~~~~~~~  233 (284)
T 2vgo_A          202 CYEFLVGMPPFDSPS------HTETHRRIV------------------------------------------NVDLKFPP  233 (284)
T ss_dssp             HHHHHHSSCTTCCSS------HHHHHHHHH------------------------------------------TTCCCCCT
T ss_pred             HHHHHHCCCCCCCCC------HhHHHHHHh------------------------------------------ccccCCCC
Confidence            999999999996432      111111111                                          11122344


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEP  474 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~  474 (530)
                      ..+..+.+||.+||..||.+|||+.++|+||||+.......|
T Consensus       234 ~~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~~~~~~~p  275 (284)
T 2vgo_A          234 FLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLP  275 (284)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHHHHCCCCCC
T ss_pred             cCCHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHHhhccccCC
Confidence            567889999999999999999999999999999876554333

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=6.2e-46  Score=365.48  Aligned_cols=257  Identities=25%  Similarity=0.364  Sum_probs=208.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc-ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|++.++||+|+||+||+|.+..++..||+|++... ....+.+.+|+++++++      .||||+++++++.    .
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~----~   77 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSL------DHPNIIRLYETFE----D   77 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTC------CCTTBCCEEEEEE----C
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhC------CCCCEeeEEEEEe----c
Confidence            46899999999999999999999999999999987764 33457788999999999      7889999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....|+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||+....           
T Consensus        78 ~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~~~~-----------  143 (277)
T 3f3z_A           78 NTDIYLVMELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCHKL-NVAHRDLKPENFLFLTDS-----------  143 (277)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESSSS-----------
T ss_pred             CCeEEEEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCCCHHHEEEecCC-----------
Confidence            57899999999 88999988753  4499999999999999999999997 999999999999994310           


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (277)
T 3f3z_A          144 --------------------------------------------------------------------------------  143 (277)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            .+..++|+|||++....  .......||+.|+|||++.+. ++.++|||||||++|+|
T Consensus       144 ----------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l  200 (277)
T 3f3z_A          144 ----------------------PDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVL  200 (277)
T ss_dssp             ----------------------TTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHH
T ss_pred             ----------------------CCCcEEEEecccceeccCccchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHH
Confidence                                  04579999999997543  234556799999999998764 99999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||....      .......+.......|...                                      ....++
T Consensus       201 ~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~  236 (277)
T 3f3z_A          201 LCGYPPFSAPT------DSEVMLKIREGTFTFPEKD--------------------------------------WLNVSP  236 (277)
T ss_dssp             HHSSCSSCCSS------HHHHHHHHHHCCCCCCHHH--------------------------------------HTTSCH
T ss_pred             HHCCCCCCCCC------HHHHHHHHHhCCCCCCchh--------------------------------------hhcCCH
Confidence            99999996432      2222222221111111110                                      013467


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       237 ~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~  268 (277)
T 3f3z_A          237 QAESLIRRLLTKSPKQRITSLQALEHEWFEKQ  268 (277)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhcCHHHhcc
Confidence            89999999999999999999999999999753

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1e-45  Score=377.36  Aligned_cols=297  Identities=26%  Similarity=0.427  Sum_probs=226.3

Q ss_pred             CCccccccCcEe--eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCC
Q 045988           28 GGYHAVRMGDTF--KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDD  102 (530)
Q Consensus        28 ~~~~~~~~g~~~--~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~  102 (530)
                      .||++...+..-  -.++|.+.+.||+|+||.||+|++..+|+.||||++....   .....+.+|+.+++.+      .
T Consensus         8 ~~~~~~~~~~~~~~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~   81 (353)
T 3coi_A            8 KGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHM------Q   81 (353)
T ss_dssp             HHEEEEEETTEEEEEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHC------C
T ss_pred             CCcEEEeecCcccccCceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhc------C
Confidence            345554444221  2579999999999999999999999999999999986532   2345678899999999      7


Q ss_pred             CcceeEecceeeecCCC--CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          103 KKCVVKLLDHFKHSGPN--GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       103 h~~Iv~~~~~~~~~~~~--~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                      ||||+++++++......  ...+|+||||++++|.+++.    ..+++..+..++.||+.||+|||++ ||+||||||+|
T Consensus        82 h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~i~~qi~~al~~LH~~-~ivH~dlkp~N  156 (353)
T 3coi_A           82 HENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMG----LKFSEEKIQYLVYQMLKGLKYIHSA-GVVHRDLKPGN  156 (353)
T ss_dssp             CTTBCCCSEEECSCSSGGGCCCCEEEEECCSEEGGGTTT----SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCCGGG
T ss_pred             CCCcccHhheEecccccccceeEEEEeccccCCHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHH
Confidence            88999999999854211  12469999999888887663    3499999999999999999999997 99999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      ||++.                                                                           
T Consensus       157 Il~~~---------------------------------------------------------------------------  161 (353)
T 3coi_A          157 LAVNE---------------------------------------------------------------------------  161 (353)
T ss_dssp             EEECT---------------------------------------------------------------------------
T ss_pred             EeECC---------------------------------------------------------------------------
Confidence            99954                                                                           


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CC
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SK  339 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~  339 (530)
                                                               ++.+||+|||++..........+||+.|+|||++.+ ..
T Consensus       162 -----------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  200 (353)
T 3coi_A          162 -----------------------------------------DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMH  200 (353)
T ss_dssp             -----------------------------------------TCCEEECSTTCTTC--------CCSBCCSCHHHHSCCSC
T ss_pred             -----------------------------------------CCcEEEeecccccCCCCCccccccCcCcCCHHHHhCcCC
Confidence                                                     457999999999876666667789999999999987 67


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccc--ccccccCccccchhccc
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSR--DFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  417 (530)
                      ++.++|||||||++|+|++|..||.+..      ..+.+..+....|.++..++.......  .+..         ....
T Consensus       201 ~~~~~Di~slG~il~el~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  265 (353)
T 3coi_A          201 YNQTVDIWSVGCIMAEMLTGKTLFKGKD------YLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQ---------SLPQ  265 (353)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSBSSC------HHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHH---------TSCB
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHH---------hCcC
Confidence            8999999999999999999999997544      567788888899988877653322110  0000         0000


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .+..    .........++++.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       266 ~~~~----~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~  314 (353)
T 3coi_A          266 TPRK----DFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRD  314 (353)
T ss_dssp             CSSC----CTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCC
T ss_pred             CCCc----cHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhccC
Confidence            0000    001123356789999999999999999999999999999986543

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=2.5e-46  Score=398.35  Aligned_cols=258  Identities=31%  Similarity=0.454  Sum_probs=209.1

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.++||+|+||+||+|++..+++.||||++...   ......+.+|+.+|+++      .||||+++++++.   
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~---   91 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL------DHPNIMKLFEILE---   91 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHC------CCTTBCCEEEEEE---
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhC------CCCCcCeEEEEEE---
Confidence            47999999999999999999999999999999998653   23456788999999999      7889999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ....+|+||||| +++|.+.+...  ..+++..++.++.||+.||.|||++ ||+||||||+|||++...         
T Consensus        92 -~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dlkp~Nil~~~~~---------  158 (486)
T 3mwu_A           92 -DSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKH-NIVHRDLKPENILLESKE---------  158 (486)
T ss_dssp             -CSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEESSSS---------
T ss_pred             -cCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCchHHEEEecCC---------
Confidence             457899999999 88999988654  3599999999999999999999997 999999999999995411         


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (486)
T 3mwu_A          159 --------------------------------------------------------------------------------  158 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                              ....+||+|||++....  ......+||+.|+|||++.+ .|+.++|||||||++|
T Consensus       159 ------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~  213 (486)
T 3mwu_A          159 ------------------------KDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILY  213 (486)
T ss_dssp             ------------------------TTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHH
T ss_pred             ------------------------CCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHH
Confidence                                    03569999999997543  23456689999999999987 5999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||.+.+      ....+..+.......+                                      ...+...
T Consensus       214 ~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~--------------------------------------~~~~~~~  249 (486)
T 3mwu_A          214 ILLSGTPPFYGKN------EYDILKRVETGKYAFD--------------------------------------LPQWRTI  249 (486)
T ss_dssp             HHHHSSCSSCCSS------HHHHHHHHHHTCCCSC--------------------------------------SGGGGGS
T ss_pred             HHHhCCCCCCCCC------HHHHHHHHHhCCCCCC--------------------------------------CcccCCC
Confidence            9999999996543      2222222221100000                                      0112345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ++++.+||.+||++||.+|||+.|+|+||||+...
T Consensus       250 s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~~  284 (486)
T 3mwu_A          250 SDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYS  284 (486)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHHCHHHHHTC
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHhcCHhhccCc
Confidence            78899999999999999999999999999998643

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=7.5e-46  Score=367.51  Aligned_cols=260  Identities=20%  Similarity=0.323  Sum_probs=208.3

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..+..|.+.+.||+|+||+||+|.+..++..||+|++....   .....+.+|+.+++++      .||||++++++|..
T Consensus        23 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~   96 (290)
T 1t4h_A           23 NDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL------QHPNIVRFYDSWES   96 (290)
T ss_dssp             TTSCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEEE
T ss_pred             cCceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhC------CCCCeeeeeeeecc
Confidence            34567999999999999999999999999999999887543   2345678899999988      78899999999987


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--ceeccCCCCcEEEeeccCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELS--IIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~g--IvHrDIKp~NILl~~~~~~~~~  192 (530)
                      .......+|+||||+ +++|.+++...  ..+++..+..|+.||+.||.|||++ |  |+||||||+|||++..      
T Consensus        97 ~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~------  167 (290)
T 1t4h_A           97 TVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGP------  167 (290)
T ss_dssp             ESSSCEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESST------
T ss_pred             ccCCCceEEEEEEecCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHcC-CCCEEECCCCHHHEEEECC------
Confidence            655668899999999 88999999753  4499999999999999999999997 8  9999999999999521      


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (290)
T 1t4h_A          168 --------------------------------------------------------------------------------  167 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-cCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                                   .+.++|+|||++...... .....||+.|+|||++.+ .++.++|||||||
T Consensus       168 -----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~  217 (290)
T 1t4h_A          168 -----------------------------TGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGM  217 (290)
T ss_dssp             -----------------------------TSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHH
T ss_pred             -----------------------------CCCEEEeeCCCcccccccccccccCCcCcCCHHHHhc-cCCCcchHHHHHH
Confidence                                         457999999999754333 344579999999999875 5999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|..||....      ........  +.....                                     ...++
T Consensus       218 ~l~~l~~g~~pf~~~~------~~~~~~~~--~~~~~~-------------------------------------~~~~~  252 (290)
T 1t4h_A          218 CMLEMATSEYPYSECQ------NAAQIYRR--VTSGVK-------------------------------------PASFD  252 (290)
T ss_dssp             HHHHHHHSSCTTTTCS------SHHHHHHH--HTTTCC-------------------------------------CGGGG
T ss_pred             HHHHHHhCCCCCCCcC------cHHHHHHH--HhccCC-------------------------------------ccccC
Confidence            9999999999996432      11111111  100000                                     00112


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ...++++.+||.+||+.||.+|||+.|+|+||||++.
T Consensus       253 ~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~f~~~  289 (290)
T 1t4h_A          253 KVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEE  289 (290)
T ss_dssp             GCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC--
T ss_pred             CCCCHHHHHHHHHHccCChhhCCCHHHHhhCcccccC
Confidence            2345789999999999999999999999999999864

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=2.4e-46  Score=384.89  Aligned_cols=257  Identities=26%  Similarity=0.386  Sum_probs=203.8

Q ss_pred             CCEEE--EEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVV--QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i--~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ..|.+  .+.||+|+||.||+|.+..+|+.||+|+++... ...+.+.+|+.+|++|      .||||+++++++.    
T Consensus        87 ~~~~~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~~----  156 (373)
T 2x4f_A           87 SFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQL------DHANLIQLYDAFE----  156 (373)
T ss_dssp             GTEEEEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEE----
T ss_pred             cceeeecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhC------CCCCCCeEEEEEE----
Confidence            44555  678999999999999999999999999987643 3456788999999998      7889999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....+||||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||+....          
T Consensus       157 ~~~~~~lv~E~~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~~----------  224 (373)
T 2x4f_A          157 SKNDIVLVMEYVDGGELFDRIIDES-YNLTELDTILFMKQICEGIRHMHQM-YILHLDLKPENILCVNRD----------  224 (373)
T ss_dssp             CSSEEEEEEECCTTCEEHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEEETT----------
T ss_pred             ECCEEEEEEeCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCCHHHEEEecCC----------
Confidence            457899999999 889998886432 3489999999999999999999997 999999999999995410          


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       225 --------------------------------------------------------------------------------  224 (373)
T 2x4f_A          225 --------------------------------------------------------------------------------  224 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                              ...+||+|||++.....  .....+||+.|+|||++.+..++.++|||||||++|+
T Consensus       225 ------------------------~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  280 (373)
T 2x4f_A          225 ------------------------AKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYM  280 (373)
T ss_dssp             ------------------------TTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHH
T ss_pred             ------------------------CCcEEEEeCCCceecCCccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHH
Confidence                                    35799999999976432  2345679999999999998889999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|..||.+..      ....+..+.......+.                                      ......+
T Consensus       281 lltg~~pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------------~~~~~~~  316 (373)
T 2x4f_A          281 LLSGLSPFLGDN------DAETLNNILACRWDLED--------------------------------------EEFQDIS  316 (373)
T ss_dssp             HHHSSCTTCCSS------HHHHHHHHHHTCCCSCS--------------------------------------GGGTTSC
T ss_pred             HHhCCCCCCCCC------HHHHHHHHHhccCCCCh--------------------------------------hhhccCC
Confidence            999999996543      23333333221111100                                      0112356


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +++.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       317 ~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~  349 (373)
T 2x4f_A          317 EEAKEFISKLLIKEKSWRISASEALKHPWLSDH  349 (373)
T ss_dssp             HHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCH
T ss_pred             HHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCC
Confidence            789999999999999999999999999999864

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=1.8e-47  Score=393.95  Aligned_cols=252  Identities=15%  Similarity=0.165  Sum_probs=199.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEec------
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLL------  110 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~------  110 (530)
                      .++|++.+.||+|+||+||+|++..+|+.||||++...    ....+.+.+|+.+++.+...   .|||||+++      
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l---~hpniv~~~~~~~~~  148 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGI---KNQKQAKVHLRFIFP  148 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTC---CSHHHHHHHHCBCCC
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhcccc---CCHHHHHHHhhhhhh
Confidence            47899999999999999999999999999999998743    23346778999776666432   799999999      


Q ss_pred             -ceeeecCC--------CCc-----EEEEEEeccCcCHHHHHHhhccCCCC-------HHHHHHHHHHHHHHHHHHHhhC
Q 045988          111 -DHFKHSGP--------NGQ-----HVCMVFEYLGENLLTLIKYADYRGVP-------LHMVKEICFHILVGLDHLHREL  169 (530)
Q Consensus       111 -~~~~~~~~--------~~~-----~~~lVmE~~~~~L~~~i~~~~~~~l~-------~~~~~~i~~qll~aL~~LH~~~  169 (530)
                       +++...+.        +..     ..||||||++++|.+++.....  ++       +..+..|+.||+.||+|||++ 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~--~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-  225 (377)
T 3byv_A          149 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLS--HSSTHKSLVHHARLQLTLQVIRLLASLHHY-  225 (377)
T ss_dssp             SEEEECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             hhhhhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccc--cccccccccHHHHHHHHHHHHHHHHHHHhC-
Confidence             44443210        001     3899999999999999975432  44       478888999999999999997 


Q ss_pred             CceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCC
Q 045988          170 SIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSP  249 (530)
Q Consensus       170 gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (530)
                      ||+||||||+||||+.                                                                
T Consensus       226 ~ivHrDikp~NIll~~----------------------------------------------------------------  241 (377)
T 3byv_A          226 GLVHTYLRPVDIVLDQ----------------------------------------------------------------  241 (377)
T ss_dssp             TEECSCCCGGGEEECT----------------------------------------------------------------
T ss_pred             CeecCCCCHHHEEEcC----------------------------------------------------------------
Confidence            9999999999999954                                                                


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCc
Q 045988          250 DHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQY  329 (530)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y  329 (530)
                                                                          ++.+||+|||+|..........+| +.|
T Consensus       242 ----------------------------------------------------~~~~kL~DFG~a~~~~~~~~~~~g-~~y  268 (377)
T 3byv_A          242 ----------------------------------------------------RGGVFLTGFEHLVRDGARVVSSVS-RGF  268 (377)
T ss_dssp             ----------------------------------------------------TCCEEECCGGGCEETTCEEECCCC-TTC
T ss_pred             ----------------------------------------------------CCCEEEEechhheecCCcccCCCC-cCc
Confidence                                                                457999999999876666667788 999


Q ss_pred             cCChhhcCC-----------CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCc
Q 045988          330 RCPEVLLGS-----------KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRY  398 (530)
Q Consensus       330 ~aPE~l~~~-----------~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  398 (530)
                      +|||++.+.           .|+.++|||||||++|+|++|..||........                           
T Consensus       269 ~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~---------------------------  321 (377)
T 3byv_A          269 EPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGG---------------------------  321 (377)
T ss_dssp             CCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CC---------------------------
T ss_pred             cChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccc---------------------------
Confidence            999999887           799999999999999999999999964331110                           


Q ss_pred             ccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          399 SRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                                           ...+    .......++++.+||.+||+.||.+|||+.|+|+||||+.
T Consensus       322 ---------------------~~~~----~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~  365 (377)
T 3byv_A          322 ---------------------SEWI----FRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQ  365 (377)
T ss_dssp             ---------------------SGGG----GSSCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHH
T ss_pred             ---------------------hhhh----hhhccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHH
Confidence                                 0000    0111345688999999999999999999999999999974

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=6.1e-46  Score=367.53  Aligned_cols=257  Identities=26%  Similarity=0.381  Sum_probs=203.1

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|.+.++||+|+||+||+|.+..++..||+|++....  ...+.+.+|+++|+++      .||||+++++++.    
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~----   90 (285)
T 3is5_A           21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSL------DHPNIIKIFEVFE----   90 (285)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTC------CCTTBCCEEEEEE----
T ss_pred             hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhC------CCchHHhHHHhee----
Confidence            478999999999999999999999999999999887653  3357788999999999      7889999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                      .....|+||||+ +++|.+++....  ...+++..+..++.||+.||+|||++ ||+||||||+|||+....        
T Consensus        91 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~dikp~NIl~~~~~--------  161 (285)
T 3is5_A           91 DYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ-HVVHKDLKPENILFQDTS--------  161 (285)
T ss_dssp             CSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEESSSS--------
T ss_pred             cCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC-CEEECCCCHHHEEEecCC--------
Confidence            457899999999 789999886432  35599999999999999999999997 999999999999994310        


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (285)
T 3is5_A          162 --------------------------------------------------------------------------------  161 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                               ....++|+|||++.....  ......||+.|+|||++. ..++.++|||||||++
T Consensus       162 -------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il  215 (285)
T 3is5_A          162 -------------------------PHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVM  215 (285)
T ss_dssp             -------------------------TTCCEEECCCCCCCC----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHH
T ss_pred             -------------------------CCCCEEEEeeecceecCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHH
Confidence                                     035699999999975332  244567999999999986 4689999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|..||.+..       ...+...... +....                                     ......
T Consensus       216 ~~ll~g~~pf~~~~-------~~~~~~~~~~-~~~~~-------------------------------------~~~~~~  250 (285)
T 3is5_A          216 YFLLTGCLPFTGTS-------LEEVQQKATY-KEPNY-------------------------------------AVECRP  250 (285)
T ss_dssp             HHHHHSSCSSCCSS-------HHHHHHHHHH-CCCCC-------------------------------------CC--CC
T ss_pred             HHHHhCCCCCCCCC-------HHHHHhhhcc-CCccc-------------------------------------ccccCc
Confidence            99999999996432       1111111100 00000                                     000112


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      .++++.+||.+||+.||.+|||+.|+|+||||++
T Consensus       251 ~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          251 LTPQAVDLLKQMLTKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             CCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGGC
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHhcCHHhhc
Confidence            4678999999999999999999999999999985

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1.1e-46  Score=387.24  Aligned_cols=266  Identities=12%  Similarity=0.081  Sum_probs=195.0

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecc------
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD------  111 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~------  111 (530)
                      .+|++.++||+|+||+||+|++..+++.||||++....    ...+.+.+|+.+++.|.+    .||||++++.      
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~----~hp~iv~~~~~~~~p~  137 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG----ESPEEARDRRRLLLPS  137 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC--------------CBCCCC
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc----cChhhhhhceeEEeee
Confidence            35999999999999999999999999999999988743    345567789888888865    5889888663      


Q ss_pred             -eeeecCC-------------CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHH------HHHHHHHHHHHHHHHhhCCc
Q 045988          112 -HFKHSGP-------------NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV------KEICFHILVGLDHLHRELSI  171 (530)
Q Consensus       112 -~~~~~~~-------------~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~------~~i~~qll~aL~~LH~~~gI  171 (530)
                       ++...+.             ....+|||||||+++|.+++..... .+.....      ..++.||+.||+|||++ ||
T Consensus       138 d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~-~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~-~i  215 (371)
T 3q60_A          138 DAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDF-VYVFRGDEGILALHILTAQLIRLAANLQSK-GL  215 (371)
T ss_dssp             EEEEETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             hheecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHHHHHHHHC-CC
Confidence             3333221             0156899999999999999976432 2444444      57779999999999997 99


Q ss_pred             eeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCC
Q 045988          172 IHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDH  251 (530)
Q Consensus       172 vHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (530)
                      |||||||+||||+.                                                                  
T Consensus       216 vHrDikp~NIll~~------------------------------------------------------------------  229 (371)
T 3q60_A          216 VHGHFTPDNLFIMP------------------------------------------------------------------  229 (371)
T ss_dssp             EETTCSGGGEEECT------------------------------------------------------------------
T ss_pred             ccCcCCHHHEEECC------------------------------------------------------------------
Confidence            99999999999955                                                                  


Q ss_pred             CCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccC
Q 045988          252 TSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRC  331 (530)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~a  331 (530)
                                                                        ++.+||+|||+|...........+|+.|+|
T Consensus       230 --------------------------------------------------~~~~kL~DFG~a~~~~~~~~~~~~t~~y~a  259 (371)
T 3q60_A          230 --------------------------------------------------DGRLMLGDVSALWKVGTRGPASSVPVTYAP  259 (371)
T ss_dssp             --------------------------------------------------TSCEEECCGGGEEETTCEEEGGGSCGGGCC
T ss_pred             --------------------------------------------------CCCEEEEecceeeecCCCccCccCCcCCcC
Confidence                                                              467999999999876544435567899999


Q ss_pred             ChhhcC--CCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcc
Q 045988          332 PEVLLG--SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL  409 (530)
Q Consensus       332 PE~l~~--~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  409 (530)
                      ||++.+  ..|+.++|||||||++|+|++|.+||.........                             .+....  
T Consensus       260 PE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~-----------------------------~~~~~~--  308 (371)
T 3q60_A          260 REFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG-----------------------------SWKRPS--  308 (371)
T ss_dssp             HHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTT-----------------------------CCCBCC--
T ss_pred             hhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCccccc-----------------------------chhhhh--
Confidence            999987  67999999999999999999999999755321110                             000000  


Q ss_pred             ccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          410 RHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                       ...       .......+......++.+.+||.+||++||.+|||+.|+|+||||+..
T Consensus       309 -~~~-------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  359 (371)
T 3q60_A          309 -LRV-------PGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQL  359 (371)
T ss_dssp             -TTS-------CCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHH
T ss_pred             -hhh-------ccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHH
Confidence             000       000000011123567899999999999999999999999999999853

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1e-46  Score=401.21  Aligned_cols=262  Identities=30%  Similarity=0.428  Sum_probs=211.8

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .+..+ .++|++.++||+|+||+||+|++..+++.||||++...    ......+.+|+.+|+++      .||||++++
T Consensus        20 ~~~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~   92 (484)
T 3nyv_A           20 STAIF-SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL------DHPNIMKLY   92 (484)
T ss_dssp             CCCCH-HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTC------CCTTBCCEE
T ss_pred             CCCcc-cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhC------CCCCCCcEE
Confidence            34444 57899999999999999999999999999999998654    23456788999999998      789999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ++|.    ....+|+||||| +++|.+++..  ...+++..+..++.||+.||+|||++ ||+||||||+|||+....  
T Consensus        93 ~~~~----~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~~~~--  163 (484)
T 3nyv_A           93 EFFE----DKGYFYLVGEVYTGGELFDEIIS--RKRFSEVDAARIIRQVLSGITYMHKN-KIVHRDLKPENLLLESKS--  163 (484)
T ss_dssp             EEEE----CSSEEEEEECCCCSCBHHHHHHT--CSCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESSSS--
T ss_pred             EEEE----eCCEEEEEEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEEecCC--
Confidence            9998    457999999999 8999998864  34599999999999999999999997 999999999999994310  


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (484)
T 3nyv_A          164 --------------------------------------------------------------------------------  163 (484)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                     ....+||+|||++.....  .....+||+.|+|||++.+ .|+.++|||
T Consensus       164 -------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~Diw  211 (484)
T 3nyv_A          164 -------------------------------KDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVW  211 (484)
T ss_dssp             -------------------------------TTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHH
T ss_pred             -------------------------------CCCcEEEEeeeeeEEcccccccccCCCCccccCceeecC-CCCCcceeH
Confidence                                           045799999999975432  2334579999999999987 699999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|.+||.+..      ....+..+.......+                                      
T Consensus       212 slG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~--------------------------------------  247 (484)
T 3nyv_A          212 STGVILYILLSGCPPFNGAN------EYDILKKVEKGKYTFE--------------------------------------  247 (484)
T ss_dssp             HHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHCCCCCC--------------------------------------
T ss_pred             HHHHHHHHHHHCCCCCCCCC------HHHHHHHHHcCCCCCC--------------------------------------
Confidence            99999999999999996543      2222322221100000                                      


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ...+...++.+.+||.+||++||.+|||+.|+|+||||+..
T Consensus       248 ~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~  288 (484)
T 3nyv_A          248 LPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTY  288 (484)
T ss_dssp             SGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChhhccc
Confidence            01113456889999999999999999999999999999854

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1.8e-46  Score=376.02  Aligned_cols=264  Identities=24%  Similarity=0.336  Sum_probs=206.6

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..+ .++|++.+.||+|+||.||+|++..+++.||||+++....    ....+.+|+.+++++      .||||+++++
T Consensus         7 ~~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~   79 (311)
T 3ork_A            7 PSHL-SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL------NHPAIVAVYD   79 (311)
T ss_dssp             CSEE-TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCC------CCTTBCCEEE
T ss_pred             ccee-cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcC------CCCCcceEEE
Confidence            4455 6899999999999999999999999999999999876432    234567788877777      7899999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ++......+...|+||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.     
T Consensus        80 ~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~~-----  151 (311)
T 3ork_A           80 TGEAETPAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQN-GIIHRDVKPANIMISA-----  151 (311)
T ss_dssp             EEEEEETTEEEEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEET-----
T ss_pred             eeeccCCCCcccEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCCcCCCCHHHEEEcC-----
Confidence            9987655556779999999 88999999754  3599999999999999999999997 9999999999999965     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (311)
T 3ork_A          152 --------------------------------------------------------------------------------  151 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcCCCCCCcc
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLGSKYSTPA  344 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~~~~~~~~  344 (530)
                                                     ++.+||+|||++.....      .....+||+.|+|||++.+..++.++
T Consensus       152 -------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  200 (311)
T 3ork_A          152 -------------------------------TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARS  200 (311)
T ss_dssp             -------------------------------TSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHH
T ss_pred             -------------------------------CCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchH
Confidence                                           45799999999975332      12345689999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      |||||||++|+|++|..||.+..      .......+... ...+..                                 
T Consensus       201 Di~slG~~l~~ll~g~~pf~~~~------~~~~~~~~~~~-~~~~~~---------------------------------  240 (311)
T 3ork_A          201 DVYSLGCVLYEVLTGEPPFTGDS------PVSVAYQHVRE-DPIPPS---------------------------------  240 (311)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHC-CCCCHH---------------------------------
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHhcC-CCCCcc---------------------------------
Confidence            99999999999999999996432      11111111110 111100                                 


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                          ......+.++.+||.+||..||.+||++.++|.|+|++...
T Consensus       241 ----~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~  281 (311)
T 3ork_A          241 ----ARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  281 (311)
T ss_dssp             ----HHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred             ----cccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence                01223567899999999999999999999999999998643

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=5e-46  Score=376.17  Aligned_cols=282  Identities=29%  Similarity=0.423  Sum_probs=213.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++++.||+|+||.||+|++..+++.||||++.....   ....+.+|+.+++++      .||||+++++++.   
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~---   94 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQL------RHENLVNLLEVCK---   94 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEE---
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhC------CCCCEeeEEEEee---
Confidence            4799999999999999999999999999999998765432   234567899999999      7888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       .....|+||||+ ++.|..++.  ....+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        95 -~~~~~~lv~e~~~~~~l~~~~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~Nil~~~-----------  159 (331)
T 4aaa_A           95 -KKKRWYLVFEFVDHTILDDLEL--FPNGLDYQVVQKYLFQIINGIGFCHSH-NIIHRDIKPENILVSQ-----------  159 (331)
T ss_dssp             -ETTEEEEEEECCSEEHHHHHHH--STTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT-----------
T ss_pred             -cCCEEEEEEecCCcchHHHHHh--hccCCCHHHHHHHHHHHHHHHHHHHHC-CEEccCcChheEEEcC-----------
Confidence             447899999999 455555443  234599999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (331)
T 4aaa_A          160 --------------------------------------------------------------------------------  159 (331)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACI  352 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~i  352 (530)
                                               ++.++|+|||++.....   ......||+.|+|||++.+. .++.++|||||||+
T Consensus       160 -------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~i  214 (331)
T 4aaa_A          160 -------------------------SGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCL  214 (331)
T ss_dssp             -------------------------TSCEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHH
T ss_pred             -------------------------CCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHH
Confidence                                     45799999999965432   23456799999999999875 68999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|.+||.+..      ..+.+..+....|..+.......       ....................    .....
T Consensus       215 l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----~~~~~  277 (331)
T 4aaa_A          215 VTEMFMGEPLFPGDS------DIDQLYHIMMCLGNLIPRHQELF-------NKNPVFAGVRLPEIKEREPL----ERRYP  277 (331)
T ss_dssp             HHHHHHSSCSCCCSS------HHHHHHHHHHHHCSCCHHHHHHH-------HHCGGGTTCCCCCCSSCCCH----HHHST
T ss_pred             HHHHHhCCCCCCCCC------cHHHHHHHHHHhCCCChhhhhHh-------hhccccccccCccccccchh----hhccc
Confidence            999999999997544      56777778888777665432110       00000000000000000000    01122


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ..++.+.+||.+||++||.+|||+.|+|+||||+..
T Consensus       278 ~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~  313 (331)
T 4aaa_A          278 KLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMD  313 (331)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHGG
T ss_pred             chhHHHHHHHHHHhccCcccCCCHHHHhcCchhccC
Confidence            457889999999999999999999999999999853

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.9e-46  Score=374.27  Aligned_cols=258  Identities=22%  Similarity=0.353  Sum_probs=209.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||+|+++...     .....+.+|+.+++++      .||||+++++++..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~   77 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRL------RHKNVIQLVDVLYN   77 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTC------CCTTBCCEEEEEEC
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhc------CCCCeeEEEEEEEc
Confidence            478999999999999999999999999999999987642     3346788999999988      78899999999864


Q ss_pred             cCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                      .  .....|+||||+.++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.          
T Consensus        78 ~--~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-~i~H~dlkp~NIl~~~----------  144 (305)
T 2wtk_C           78 E--EKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ-GIVHKDIKPGNLLLTT----------  144 (305)
T ss_dssp             C-----CEEEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT----------
T ss_pred             C--CCCeEEEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCcccEEEcC----------
Confidence            3  44689999999977788888776666799999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (305)
T 2wtk_C          145 --------------------------------------------------------------------------------  144 (305)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcCCC--CCCcchhHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLGSK--YSTPADLWS  348 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~~~--~~~~~DiWS  348 (530)
                                                ++.++|+|||++.....     ......||+.|+|||++.+..  ++.++||||
T Consensus       145 --------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~s  198 (305)
T 2wtk_C          145 --------------------------GGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWS  198 (305)
T ss_dssp             --------------------------TCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHH
T ss_pred             --------------------------CCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHH
Confidence                                      45799999999975431     234557899999999998754  377999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||.+..      .......+                                          ....+
T Consensus       199 lG~il~~l~~g~~p~~~~~------~~~~~~~i------------------------------------------~~~~~  230 (305)
T 2wtk_C          199 AGVTLYNITTGLYPFEGDN------IYKLFENI------------------------------------------GKGSY  230 (305)
T ss_dssp             HHHHHHHHHHSSCSCCCSS------HHHHHHHH------------------------------------------HHCCC
T ss_pred             HHHHHHHHHhCCCCCCCch------HHHHHHHH------------------------------------------hcCCC
Confidence            9999999999999996432      11111111                                          11112


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      .++...++.+.+||.+||..||.+|||+.|+|+||||+.....
T Consensus       231 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~~  273 (305)
T 2wtk_C          231 AIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPP  273 (305)
T ss_dssp             CCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCCC
T ss_pred             CCCCccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccCCCC
Confidence            2344567889999999999999999999999999999876543

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.1e-45  Score=372.28  Aligned_cols=251  Identities=26%  Similarity=0.407  Sum_probs=206.6

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      .|...++||+|+||+||+|++..+|+.||||++.... ...+.+.+|+.+++++      .||||+++++++..    ..
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~----~~  115 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDY------QHFNVVEMYKSYLV----GE  115 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTC------CCTTBCCEEEEEEE----TT
T ss_pred             hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhC------CCCCcceEEEEEEE----CC
Confidence            5899999999999999999999999999999987543 3356688999999988      78889999999984    46


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ..++||||+ +++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+|||++.               
T Consensus       116 ~~~lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~~---------------  176 (321)
T 2c30_A          116 ELWVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHAQ-GVIHRDIKSDSILLTL---------------  176 (321)
T ss_dssp             EEEEEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT---------------
T ss_pred             EEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEECC---------------
Confidence            899999999 8899998753   3599999999999999999999997 9999999999999954               


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (321)
T 2c30_A          177 --------------------------------------------------------------------------------  176 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                           ++.+||+|||++.....   .....+||+.|+|||++.+..++.++|||||||++|+|+
T Consensus       177 ---------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~  235 (321)
T 2c30_A          177 ---------------------DGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMV  235 (321)
T ss_dssp             ---------------------TCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------CCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHH
Confidence                                 45799999999875432   234568999999999999989999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|..||....      ....+..+..   ..+.                                    ........++.
T Consensus       236 ~g~~pf~~~~------~~~~~~~~~~---~~~~------------------------------------~~~~~~~~~~~  270 (321)
T 2c30_A          236 DGEPPYFSDS------PVQAMKRLRD---SPPP------------------------------------KLKNSHKVSPV  270 (321)
T ss_dssp             HSSCTTTTSC------HHHHHHHHHH---SSCC------------------------------------CCTTGGGSCHH
T ss_pred             hCCCCCCCCC------HHHHHHHHhc---CCCC------------------------------------CcCccccCCHH
Confidence            9999996432      1122211111   0000                                    00112234678


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +.+||.+||+.||.+|||+.|+|+||||...
T Consensus       271 l~~li~~~l~~dp~~Rps~~ell~hp~~~~~  301 (321)
T 2c30_A          271 LRDFLERMLVRDPQERATAQELLDHPFLLQT  301 (321)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHTSGGGGGC
T ss_pred             HHHHHHHHccCChhhCcCHHHHhcChhhccC
Confidence            9999999999999999999999999999854

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=4.2e-46  Score=373.76  Aligned_cols=291  Identities=27%  Similarity=0.437  Sum_probs=213.5

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      |..+ .++|++.+.||+|+||.||+|.+..+++.||||++.... ...+.+.+|+.+++++      .||||+++++++.
T Consensus         6 ~~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~   78 (320)
T 2i6l_A            6 GFDL-GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRL------DHDNIVKVFEILG   78 (320)
T ss_dssp             CEEE-TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTC------CCTTBCCEEEEEC
T ss_pred             cCcc-CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhc------CCCCeeEEEEecc
Confidence            4455 789999999999999999999999999999999876543 3356778999999999      7889999999885


Q ss_pred             ecC----------CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          115 HSG----------PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       115 ~~~----------~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                      ..+          ......|+||||++++|.+++..   ..+++..++.++.||+.||+|||++ ||+||||||+|||++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~  154 (320)
T 2i6l_A           79 PSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSA-NVLHRDLKPANLFIN  154 (320)
T ss_dssp             TTSCBCCC----CCSCSEEEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGEEEE
T ss_pred             ccccccccccccccccCceeEEeeccCCCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEc
Confidence            432          23478999999998899998853   4599999999999999999999997 999999999999995


Q ss_pred             eccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 045988          185 SMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVE  264 (530)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (530)
                      ..                                                                              
T Consensus       155 ~~------------------------------------------------------------------------------  156 (320)
T 2i6l_A          155 TE------------------------------------------------------------------------------  156 (320)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            31                                                                              


Q ss_pred             cccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcC-
Q 045988          265 DQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLG-  337 (530)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~-  337 (530)
                                                           +..+||+|||++.....      ......+|+.|+|||++.+ 
T Consensus       157 -------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  199 (320)
T 2i6l_A          157 -------------------------------------DLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSP  199 (320)
T ss_dssp             -------------------------------------TTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCT
T ss_pred             -------------------------------------CCeEEEccCccccccCCCcccccccccccccccccCcHHhcCc
Confidence                                                 35799999999975432      1233467999999999876 


Q ss_pred             CCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          338 SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       338 ~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                      ..++.++|||||||++|+|++|..||.+..      ....+..+....+......+.........+        ......
T Consensus       200 ~~~~~~~Di~slG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  265 (320)
T 2i6l_A          200 NNYTKAIDMWAAGCIFAEMLTGKTLFAGAH------ELEQMQLILESIPVVHEEDRQELLSVIPVY--------IRNDMT  265 (320)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHSCCCCHHHHHHHHTTSCHH--------HHHHTT
T ss_pred             ccCCchhhhHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCchhhhhhhhhcCccc--------cccccc
Confidence            678999999999999999999999997543      445555555554444332211000000000        000000


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .+...    ........+.++.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       266 ~~~~~----~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~  314 (320)
T 2i6l_A          266 EPHKP----LTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSF  314 (320)
T ss_dssp             SCCCC----HHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC
T ss_pred             CCCCC----hhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcccccccC
Confidence            00000    00112346788999999999999999999999999999986543

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=1.5e-46  Score=384.41  Aligned_cols=297  Identities=23%  Similarity=0.324  Sum_probs=213.6

Q ss_pred             ccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           32 AVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        32 ~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      +..+|+.. .++|++.++||+|+||+||+|.+..+++.||+|++...  ......+.+|+.+++++      .||||+++
T Consensus        24 ~~~~~~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~   96 (360)
T 3eqc_A           24 KQKVGELK-DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC------NSPYIVGF   96 (360)
T ss_dssp             HHTCCCCC-GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGC------CCTTBCCE
T ss_pred             hhcccccc-cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHC------CCCCEEEE
Confidence            45667665 78999999999999999999999999999999998764  23346678899999888      78899999


Q ss_pred             cceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccC
Q 045988          110 LDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID  188 (530)
Q Consensus       110 ~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~  188 (530)
                      ++++..    ....|+||||+ +++|.+++...  ..+++..+..++.||+.||+|||++.||+||||||+|||++.   
T Consensus        97 ~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~---  167 (360)
T 3eqc_A           97 YGAFYS----DGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNS---  167 (360)
T ss_dssp             EEEEEE----TTEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECT---
T ss_pred             eEEEEE----CCEEEEEEECCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECC---
Confidence            999984    47899999999 78999999754  349999999999999999999998338999999999999954   


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (360)
T 3eqc_A          168 --------------------------------------------------------------------------------  167 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-cccCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-KQFTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-~~~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                       ++.++|+|||++.... .......||+.|+|||++.+..++.++|||
T Consensus       168 ---------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~  214 (360)
T 3eqc_A          168 ---------------------------------RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIW  214 (360)
T ss_dssp             ---------------------------------TCCEEECCCCCCHHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHH
T ss_pred             ---------------------------------CCCEEEEECCCCcccccccccCCCCCCCeECHHHHcCCCCCchhhHH
Confidence                                             4579999999996532 234556899999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHH--HhCCCchhh---hcCCCcccccccccCccccchhcccCCchh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMME--LLGMMPRKI---AFGGRYSRDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~--~~g~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      ||||++|+|++|..||....       ...+..+..  ..+..+...   .........+............    ....
T Consensus       215 slG~il~~l~~g~~pf~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  283 (360)
T 3eqc_A          215 SMGLSLVEMAVGRYPIPPPD-------AKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFE----LLDY  283 (360)
T ss_dssp             HHHHHHHHHHHTSCCSSCCC-------HHHHHHHHC------------------------------CCCHHH----HHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCC-------HHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchh----hhhH
Confidence            99999999999999996532       222222221  111111100   0000000000000000000000    0000


Q ss_pred             hhhhhc--cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          423 VLIEKY--DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       423 ~~~~~~--~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +.....  ......+.++.+||.+||++||.+|||+.|+|+||||+..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~  331 (360)
T 3eqc_A          284 IVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRS  331 (360)
T ss_dssp             HHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHH
T ss_pred             HhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcc
Confidence            111110  1122357789999999999999999999999999999853

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=3.8e-46  Score=375.38  Aligned_cols=266  Identities=22%  Similarity=0.394  Sum_probs=209.1

Q ss_pred             CCCCCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-------chHHHHHHHHHHHHh
Q 045988           23 EDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-------YTEAALDEIKILKQI   95 (530)
Q Consensus        23 ~~~~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-------~~~~~~~Ei~il~~l   95 (530)
                      ..+....+.|...++.+ .++|++.+.||+|+||.||+|++..+++.||||++.....       ....+.+|+.+++++
T Consensus        25 ~~~~~~~~~~~~~~~~~-~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  103 (320)
T 3a99_A           25 NDLHATKLAPGKEKEPL-ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV  103 (320)
T ss_dssp             ---------------CC-TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHH
T ss_pred             HHhhhhccCcccccCCc-cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhh
Confidence            34556677888888888 7899999999999999999999999999999999876532       224567899999999


Q ss_pred             hcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-C-cCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcee
Q 045988           96 AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-G-ENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIH  173 (530)
Q Consensus        96 ~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~-~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvH  173 (530)
                      .+    .|+||+++++++.    .....++|||++ + ++|.+++...  ..+++..++.++.||+.||+|||++ ||+|
T Consensus       104 ~~----~~~~i~~~~~~~~----~~~~~~lv~e~~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~-~ivH  172 (320)
T 3a99_A          104 SS----GFSGVIRLLDWFE----RPDSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNC-GVLH  172 (320)
T ss_dssp             CS----SSCSBCCEEEEEE----CSSEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEEC
T ss_pred             cc----CCCCceEEEEEEe----cCCcEEEEEEcCCCCccHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcEe
Confidence            65    5799999999998    457899999999 4 8999998753  4599999999999999999999997 9999


Q ss_pred             ccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCC
Q 045988          174 TDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTS  253 (530)
Q Consensus       174 rDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (530)
                      |||||+|||++..                                                                   
T Consensus       173 ~Dlkp~NIll~~~-------------------------------------------------------------------  185 (320)
T 3a99_A          173 RDIKDENILIDLN-------------------------------------------------------------------  185 (320)
T ss_dssp             CCCSGGGEEEETT-------------------------------------------------------------------
T ss_pred             CCCCHHHEEEeCC-------------------------------------------------------------------
Confidence            9999999999621                                                                   


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCC
Q 045988          254 VDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCP  332 (530)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aP  332 (530)
                                                                      ++.+||+|||++..... ......||+.|+||
T Consensus       186 ------------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aP  217 (320)
T 3a99_A          186 ------------------------------------------------RGELKLIDFGSGALLKDTVYTDFDGTRVYSPP  217 (320)
T ss_dssp             ------------------------------------------------TTEEEECCCTTCEECCSSCBCCCCSCGGGSCH
T ss_pred             ------------------------------------------------CCCEEEeeCccccccccccccCCCCCccCCCh
Confidence                                                            45799999999976443 34556799999999


Q ss_pred             hhhcCCCC-CCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcccc
Q 045988          333 EVLLGSKY-STPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH  411 (530)
Q Consensus       333 E~l~~~~~-~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  411 (530)
                      |++.+..+ +.++|||||||++|+|++|..||...         ..   +                              
T Consensus       218 E~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~---------~~---~------------------------------  255 (320)
T 3a99_A          218 EWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD---------EE---I------------------------------  255 (320)
T ss_dssp             HHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH---------HH---H------------------------------
T ss_pred             HHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh---------hh---h------------------------------
Confidence            99987665 68899999999999999999999521         10   0                              


Q ss_pred             chhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                                  ......++...++++.+||.+||..||.+|||+.|+|+||||+...
T Consensus       256 ------------~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~  301 (320)
T 3a99_A          256 ------------IRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVL  301 (320)
T ss_dssp             ------------HHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCC
T ss_pred             ------------hcccccccccCCHHHHHHHHHHccCChhhCcCHHHHhcCHhhcCcc
Confidence                        0011122334567899999999999999999999999999998643

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.3e-46  Score=379.27  Aligned_cols=261  Identities=26%  Similarity=0.387  Sum_probs=205.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc------ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA------QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~------~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      .++|++.+.||+|+||+||+|.+..+++.||||++...      ....+.+.+|+.+++++      .||||++++++|.
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~   98 (345)
T 3hko_A           25 QKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKL------HHPNIARLYEVYE   98 (345)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             hhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhC------CCCCcceeehhhc
Confidence            47899999999999999999999999999999998654      23456788999999999      6889999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhc--------------------------------------cCCCCHHHHHHHH
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYAD--------------------------------------YRGVPLHMVKEIC  155 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~--------------------------------------~~~l~~~~~~~i~  155 (530)
                          .....||||||| +++|.+++....                                      ...+++..++.++
T Consensus        99 ----~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (345)
T 3hko_A           99 ----DEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIM  174 (345)
T ss_dssp             ----CSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHH
T ss_pred             ----cCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHH
Confidence                457899999999 999999884211                                      0113577889999


Q ss_pred             HHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcc
Q 045988          156 FHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNE  235 (530)
Q Consensus       156 ~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (530)
                      .||+.||+|||++ ||+||||||+|||++...                                                
T Consensus       175 ~qi~~~l~~LH~~-~ivH~Dlkp~NIll~~~~------------------------------------------------  205 (345)
T 3hko_A          175 RQIFSALHYLHNQ-GICHRDIKPENFLFSTNK------------------------------------------------  205 (345)
T ss_dssp             HHHHHHHHHHHHT-TEECCCCCGGGEEESCSS------------------------------------------------
T ss_pred             HHHHHHHHHHHHC-CccccCCChhhEEEecCC------------------------------------------------
Confidence            9999999999997 999999999999995410                                                


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccc
Q 045988          236 ACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACW  315 (530)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~  315 (530)
                                                                                        ...+||+|||++..
T Consensus       206 ------------------------------------------------------------------~~~~kl~Dfg~a~~  219 (345)
T 3hko_A          206 ------------------------------------------------------------------SFEIKLVDFGLSKE  219 (345)
T ss_dssp             ------------------------------------------------------------------SCCEEECCCTTCEE
T ss_pred             ------------------------------------------------------------------CceEEEeecccccc
Confidence                                                                              23699999999975


Q ss_pred             ccc-------ccCCCCCCCCccCChhhcC--CCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhC
Q 045988          316 TYK-------QFTNDIQTRQYRCPEVLLG--SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG  386 (530)
Q Consensus       316 ~~~-------~~~~~~gt~~y~aPE~l~~--~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g  386 (530)
                      ...       ......||+.|+|||++.+  ..++.++|||||||++|+|++|..||.+..      ..+....+.....
T Consensus       220 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~  293 (345)
T 3hko_A          220 FYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVN------DADTISQVLNKKL  293 (345)
T ss_dssp             GGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHCCC
T ss_pred             ccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC------hHHHHHHHHhccc
Confidence            322       1345679999999999975  578999999999999999999999996543      2222222221100


Q ss_pred             CCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          387 MMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       387 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                      ..+                                      .......++.+.+||.+||..||.+|||+.|+|+||||+
T Consensus       294 ~~~--------------------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~  335 (345)
T 3hko_A          294 CFE--------------------------------------NPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWIS  335 (345)
T ss_dssp             CTT--------------------------------------SGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHHH
T ss_pred             ccC--------------------------------------CcccccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhhc
Confidence            000                                      001123467899999999999999999999999999998


Q ss_pred             CCCC
Q 045988          467 VGPR  470 (530)
Q Consensus       467 ~~~~  470 (530)
                      ....
T Consensus       336 ~~~~  339 (345)
T 3hko_A          336 QFSD  339 (345)
T ss_dssp             TTSS
T ss_pred             cChH
Confidence            7543

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.4e-45  Score=371.65  Aligned_cols=261  Identities=27%  Similarity=0.413  Sum_probs=207.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC--
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP--  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~--  118 (530)
                      .++|++.+.||+|+||.||+|++..+++.||||++.........+.+|+.+++++.     .||||+++++++.....  
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~~~~~~~~~~~   97 (326)
T 2x7f_A           23 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYS-----HHRNIATYYGAFIKKNPPG   97 (326)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHC-----CSTTBCCEEEEEEECC--C
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhcc-----CCCCeeeeeeEEeeccCcc
Confidence            58999999999999999999999999999999998877666788899999999984     68899999999986421  


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....+|+||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~NIl~~~------------  164 (326)
T 2x7f_A           98 MDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH-KVIHRDIKGQNVLLTE------------  164 (326)
T ss_dssp             CCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEECT------------
T ss_pred             ccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCcHHHEEEcC------------
Confidence            146899999999 77999999876555699999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (326)
T 2x7f_A          165 --------------------------------------------------------------------------------  164 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhc-----CCCCCCcchhHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLL-----GSKYSTPADLWSF  349 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~-----~~~~~~~~DiWSl  349 (530)
                                              ++.++|+|||++.....   ......||+.|+|||++.     +..++.++|||||
T Consensus       165 ------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~sl  220 (326)
T 2x7f_A          165 ------------------------NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSL  220 (326)
T ss_dssp             ------------------------TCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHH
T ss_pred             ------------------------CCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHH
Confidence                                    45799999999875432   234557899999999997     4568999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|..||....      ....+..+..  +..+                                      ..
T Consensus       221 G~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~--------------------------------------~~  254 (326)
T 2x7f_A          221 GITAIEMAEGAPPLCDMH------PMRALFLIPR--NPAP--------------------------------------RL  254 (326)
T ss_dssp             HHHHHHHHHSSCTTTTSC------HHHHHHHHHH--SCCC--------------------------------------CC
T ss_pred             HHHHHHHHhCCCCCCCCc------HHHHHHHhhc--Cccc--------------------------------------cC
Confidence            999999999999995432      1111111100  0000                                      00


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .....+..+.+||.+||..||.+|||+.++|+||||+..+
T Consensus       255 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~  294 (326)
T 2x7f_A          255 KSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQP  294 (326)
T ss_dssp             SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTSHHHHCCT
T ss_pred             CccccCHHHHHHHHHHhccChhhCCCHHHHhhChHHhhCc
Confidence            1223467899999999999999999999999999998654

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=3.9e-45  Score=374.83  Aligned_cols=255  Identities=27%  Similarity=0.426  Sum_probs=205.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---------cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      .++|.+.+.||+|+||.||+|++..+|+.||||++....         ...+.+.+|+.+++++.     .||||+++++
T Consensus        93 ~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~~  167 (365)
T 2y7j_A           93 YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVA-----GHPHIITLID  167 (365)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHT-----TCTTBCCEEE
T ss_pred             hhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhc-----CCCCEeEEEE
Confidence            368999999999999999999999999999999987543         12456778999999984     5888999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ++.    .....|+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++.     
T Consensus       168 ~~~----~~~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~-gi~H~Dlkp~NIl~~~-----  235 (365)
T 2y7j_A          168 SYE----SSSFMFLVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAVSFLHAN-NIVHRDLKPENILLDD-----  235 (365)
T ss_dssp             EEE----BSSEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT-----
T ss_pred             EEe----eCCEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEECC-----
Confidence            998    457899999999 78999998743  3599999999999999999999997 9999999999999954     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (365)
T 2y7j_A          236 --------------------------------------------------------------------------------  235 (365)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcC------CCCCC
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLG------SKYST  342 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~------~~~~~  342 (530)
                                                     ++.++|+|||++....  ......+||+.|+|||++.+      ..|+.
T Consensus       236 -------------------------------~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  284 (365)
T 2y7j_A          236 -------------------------------NMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGK  284 (365)
T ss_dssp             -------------------------------TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCT
T ss_pred             -------------------------------CCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCc
Confidence                                           4679999999987543  23456789999999999863      35889


Q ss_pred             cchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchh
Q 045988          343 PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       343 ~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      ++|||||||++|+|++|..||....      ....+..+.......+..                               
T Consensus       285 ~~Di~slG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~~~~~-------------------------------  327 (365)
T 2y7j_A          285 EVDLWACGVILFTLLAGSPPFWHRR------QILMLRMIMEGQYQFSSP-------------------------------  327 (365)
T ss_dssp             THHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCCHH-------------------------------
T ss_pred             hhhHHhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhCCCCCCCc-------------------------------
Confidence            9999999999999999999996432      122222221110000000                               


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                             .....+..+.+||.+||+.||.+|||+.|+|+||||+.
T Consensus       328 -------~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~f~r  365 (365)
T 2y7j_A          328 -------EWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFER  365 (365)
T ss_dssp             -------HHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCC
T ss_pred             -------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccCC
Confidence                   00134578999999999999999999999999999973

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=2.2e-45  Score=374.11  Aligned_cols=253  Identities=23%  Similarity=0.340  Sum_probs=206.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+|.+.+.||+|+||+||+|++..+++.||||++....    .....+.+|+++|+++      .||||+++++++..  
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~--  125 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL------RHPNTIQYRGCYLR--  125 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEE--
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhC------CCCCEeeEEEEEEE--
Confidence            46999999999999999999999999999999986532    2235678999999999      78889999999984  


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                        ....+|||||+.++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus       126 --~~~~~lv~e~~~g~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~------------  189 (348)
T 1u5q_A          126 --EHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILLSE------------  189 (348)
T ss_dssp             --TTEEEEEEECCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGEEEET------------
T ss_pred             --CCeEEEEEecCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEECC------------
Confidence              47899999999889988886433 4599999999999999999999997 9999999999999965            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (348)
T 1u5q_A          190 --------------------------------------------------------------------------------  189 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhc---CCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLL---GSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~---~~~~~~~~DiWSlG~il~  354 (530)
                                              ++.+||+|||++..... ....+||+.|+|||++.   ...++.++|||||||++|
T Consensus       190 ------------------------~~~~kL~DfG~a~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~  244 (348)
T 1u5q_A          190 ------------------------PGLVKLGDFGSASIMAP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI  244 (348)
T ss_dssp             ------------------------TTEEEECCCTTCBSSSS-BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEeeccCceecCC-CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHH
Confidence                                    46799999999976543 34568999999999985   456899999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|.+||....      ....+..+..  +..|                                      .......
T Consensus       245 ell~g~~p~~~~~------~~~~~~~~~~--~~~~--------------------------------------~~~~~~~  278 (348)
T 1u5q_A          245 ELAERKPPLFNMN------AMSALYHIAQ--NESP--------------------------------------ALQSGHW  278 (348)
T ss_dssp             HHHHSSCTTTTSC------HHHHHHHHHH--SCCC--------------------------------------CCCCTTS
T ss_pred             HHHhCCCCCCCCC------hHHHHHHHHh--cCCC--------------------------------------CCCCCCC
Confidence            9999999996432      1122211111  0000                                      0012234


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ++.+.+||.+||+.||.+|||+.++|+||||....
T Consensus       279 ~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~~~  313 (348)
T 1u5q_A          279 SEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRER  313 (348)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSCC
T ss_pred             CHHHHHHHHHHcccChhhCcCHHHHhhChhhhccC
Confidence            67899999999999999999999999999997543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=9e-46  Score=386.53  Aligned_cols=257  Identities=26%  Similarity=0.423  Sum_probs=197.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---------chHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---------YTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      .++|.+.++||+|+||+||+|.+..+++.||||++.....         ....+.+|+.+|+++      .||||+++++
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~l~~  207 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKL------NHPCIIKIKN  207 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHC------CCTTBCCCCE
T ss_pred             hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhC------CCCCEeeEEE
Confidence            4689999999999999999999999999999999875421         123467899999999      7889999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ++..     ...|+||||| +++|.+++..  ...+++..++.++.||+.||+|||++ ||+||||||+|||++....  
T Consensus       208 ~~~~-----~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~-~ivHrDlkp~NIll~~~~~--  277 (419)
T 3i6u_A          208 FFDA-----EDYYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLHEN-GIIHRDLKPENVLLSSQEE--  277 (419)
T ss_dssp             EEES-----SEEEEEEECCTTCBGGGGTSS--SCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESSSSS--
T ss_pred             EEec-----CceEEEEEcCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChHhEEEecCCC--
Confidence            9863     4579999999 8899887753  34599999999999999999999997 9999999999999954110  


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       278 --------------------------------------------------------------------------------  277 (419)
T 3i6u_A          278 --------------------------------------------------------------------------------  277 (419)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcC---CCCCCcch
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLG---SKYSTPAD  345 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~---~~~~~~~D  345 (530)
                                                     ...+||+|||++......  ....+||+.|+|||++.+   ..|+.++|
T Consensus       278 -------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~D  326 (419)
T 3i6u_A          278 -------------------------------DCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVD  326 (419)
T ss_dssp             -------------------------------SCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHH
T ss_pred             -------------------------------cceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhh
Confidence                                           346999999999764432  345679999999999864   56888999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|+|++|.+||......     ......+....-..+.                                   
T Consensus       327 iwslG~il~~lltg~~pf~~~~~~-----~~~~~~i~~~~~~~~~-----------------------------------  366 (419)
T 3i6u_A          327 CWSLGVILFICLSGYPPFSEHRTQ-----VSLKDQITSGKYNFIP-----------------------------------  366 (419)
T ss_dssp             HHHHHHHHHHHHHSSCSSCCCSSS-----CCHHHHHHTTCCCCCH-----------------------------------
T ss_pred             hHhHHHHHHHHHHCCCCCCCCcch-----HHHHHHHhcCCCCCCc-----------------------------------
Confidence            999999999999999999653311     1111111100000000                                   


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                         ......++.+.+||.+||++||.+|||+.|+|+||||+.
T Consensus       367 ---~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~  405 (419)
T 3i6u_A          367 ---EVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQD  405 (419)
T ss_dssp             ---HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCC
T ss_pred             ---hhhcccCHHHHHHHHHHccCChhHCcCHHHHhCCcccCC
Confidence               011235678999999999999999999999999999985

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=2.6e-45  Score=362.07  Aligned_cols=259  Identities=27%  Similarity=0.416  Sum_probs=206.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-------chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .++|++.+.||+|+||.||+|++..+++.||+|+++....       ..+.+.+|+.+++++      .||||+++++++
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~   77 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI------RHPNIITLHDIF   77 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHC------CCTTBCCEEEEE
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhC------CCCCeeehhhee
Confidence            4689999999999999999999999999999998875421       356788999999999      788899999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      .    .....++||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++.....   
T Consensus        78 ~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nil~~~~~~~---  147 (283)
T 3bhy_A           78 E----NKTDVVLILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHYLHSK-RIAHFDLKPENIMLLDKNVP---  147 (283)
T ss_dssp             E----CSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCSSSS---
T ss_pred             c----CCCeEEEEEeecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCChHHEEEecCCCC---
Confidence            8    457899999999 89999998743  3599999999999999999999997 99999999999999542100   


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (283)
T 3bhy_A          148 --------------------------------------------------------------------------------  147 (283)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                   ...++|+|||.+.....  ......||+.|+|||++.+..++.++||||||
T Consensus       148 -----------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  198 (283)
T 3bhy_A          148 -----------------------------NPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIG  198 (283)
T ss_dssp             -----------------------------SCCEEECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHH
T ss_pred             -----------------------------CCceEEEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHH
Confidence                                         23699999999975432  23455789999999999998999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|..||....      ....+..+.......+.                                      ..
T Consensus       199 ~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~--------------------------------------~~  234 (283)
T 3bhy_A          199 VITYILLSGASPFLGET------KQETLTNISAVNYDFDE--------------------------------------EY  234 (283)
T ss_dssp             HHHHHHHHSSCTTCCSS------HHHHHHHHHTTCCCCCH--------------------------------------HH
T ss_pred             HHHHHHHHCCCCCCCcc------hHHHHHHhHhcccCCcc--------------------------------------hh
Confidence            99999999999996432      12222222111000000                                      01


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ....+..+.+||.+||..||.+|||+.|+|+||||+..
T Consensus       235 ~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~  272 (283)
T 3bhy_A          235 FSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAI  272 (283)
T ss_dssp             HTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHH
T ss_pred             cccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHH
Confidence            12346789999999999999999999999999999854

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1e-45  Score=374.76  Aligned_cols=253  Identities=27%  Similarity=0.369  Sum_probs=211.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++....    ...+.+.+|+.+++.+      .||||+++++++.  
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~--  111 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSL------AHQHVVGFHGFFE--  111 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTC------CCTTBCCEEEEEE--
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEe--
Confidence            578999999999999999999999999999999987542    3356678899999988      7889999999998  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        ....+|+||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.          
T Consensus       112 --~~~~~~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIl~~~----------  176 (335)
T 2owb_A          112 --DNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRN-RVIHRDLKLGNLFLNE----------  176 (335)
T ss_dssp             --CSSEEEEEECCCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECT----------
T ss_pred             --cCCeEEEEEecCCCCCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCEecCCCchhEEEcC----------
Confidence              457899999999 78999988753  4599999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (335)
T 2owb_A          177 --------------------------------------------------------------------------------  176 (335)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                                ++.++|+|||++....   .......||+.|+|||++.+..++.++|||||||+
T Consensus       177 --------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i  230 (335)
T 2owb_A          177 --------------------------DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCI  230 (335)
T ss_dssp             --------------------------TCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHH
T ss_pred             --------------------------CCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHH
Confidence                                      4579999999997543   22345679999999999999899999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|..||....      .......+                                          ....+.++.
T Consensus       231 l~~l~~g~~pf~~~~------~~~~~~~~------------------------------------------~~~~~~~~~  262 (335)
T 2owb_A          231 MYTLLVGKPPFETSC------LKETYLRI------------------------------------------KKNEYSIPK  262 (335)
T ss_dssp             HHHHHHSSCTTCCSS------HHHHHHHH------------------------------------------HHTCCCCCT
T ss_pred             HHHHHHCcCCCCCCC------HHHHHHHH------------------------------------------hcCCCCCCc
Confidence            999999999996432      11111111                                          111122344


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ..++.+.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       263 ~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~~~~~~~  300 (335)
T 2owb_A          263 HINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGYI  300 (335)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSCC
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHhcCccccCCCc
Confidence            55678999999999999999999999999999987653

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.2e-45  Score=366.65  Aligned_cols=253  Identities=27%  Similarity=0.369  Sum_probs=210.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++....    ...+.+.+|+.+++.+      .||||+++++++.  
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~--   85 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSL------AHQHVVGFHGFFE--   85 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTC------CCTTBCCEEEEEE--
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhC------CCCCEeeeeeeec--
Confidence            578999999999999999999999999999999987542    2346678899999988      7889999999998  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        .....++||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.          
T Consensus        86 --~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~~----------  150 (294)
T 2rku_A           86 --DNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRN-RVIHRDLKLGNLFLNE----------  150 (294)
T ss_dssp             --CSSEEEEEEECCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECT----------
T ss_pred             --cCCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChHhEEEcC----------
Confidence              457899999999 78999988643  3599999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (294)
T 2rku_A          151 --------------------------------------------------------------------------------  150 (294)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                                ++.++|+|||++....   .......||+.|+|||++.+..++.++|||||||+
T Consensus       151 --------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~  204 (294)
T 2rku_A          151 --------------------------DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCI  204 (294)
T ss_dssp             --------------------------TCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHH
T ss_pred             --------------------------CCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHH
Confidence                                      4579999999997543   22345678999999999999889999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|..||....      ..+....   +                                       ......++.
T Consensus       205 l~~l~~g~~p~~~~~------~~~~~~~---~---------------------------------------~~~~~~~~~  236 (294)
T 2rku_A          205 MYTLLVGKPPFETSC------LKETYLR---I---------------------------------------KKNEYSIPK  236 (294)
T ss_dssp             HHHHHHSSCTTCCSS------HHHHHHH---H---------------------------------------HTTCCCCCT
T ss_pred             HHHHHhCCCCCCCCC------HHHHHHH---H---------------------------------------hhccCCCcc
Confidence            999999999996432      1111111   1                                       011122334


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ..++.+.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       237 ~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~  274 (294)
T 2rku_A          237 HINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGYI  274 (294)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSCC
T ss_pred             ccCHHHHHHHHHHcccChhhCcCHHHHhhChheecCCc
Confidence            55678999999999999999999999999999987654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=2.1e-45  Score=362.71  Aligned_cols=271  Identities=19%  Similarity=0.259  Sum_probs=204.1

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.+.||+|+||+||+|.+..+++.||||++...   ......+.+|+.++..+.     .||||+++++++..  
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~-----~h~~iv~~~~~~~~--   82 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLG-----QHSHVVRYFSAWAE--   82 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSC-----SCTTBCCEEEEEEE--
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhC-----CCCCeeeeeeeeec--
Confidence            47899999999999999999999999999999998753   233556778888888874     68899999999984  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADY--RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~--~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                        ....++||||+ +++|.+++.....  ..+++..++.++.||+.||+|||++ ||+||||||+|||++..........
T Consensus        83 --~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dikp~NIl~~~~~~~~~~~~  159 (289)
T 1x8b_A           83 --DDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM-SLVHMDIKPSNIFISRTSIPNAASE  159 (289)
T ss_dssp             --TTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC----------
T ss_pred             --CCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC-CEeecCCCHHHEEEcCCCCCccccc
Confidence              47899999999 8899999976432  4589999999999999999999997 9999999999999965211000000


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                      .                                                                               
T Consensus       160 ~-------------------------------------------------------------------------------  160 (289)
T 1x8b_A          160 E-------------------------------------------------------------------------------  160 (289)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACIC  353 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il  353 (530)
                                        ............++|+|||.+...... ....||+.|+|||++.+. .++.++|||||||++
T Consensus       161 ------------------~~~~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il  221 (289)
T 1x8b_A          161 ------------------GDEDDWASNKVMFKIGDLGHVTRISSP-QVEEGDSRFLANEVLQENYTHLPKADIFALALTV  221 (289)
T ss_dssp             ---------------------------CCCEEECCCTTCEETTCS-CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             ------------------cccccccCCceEEEEcccccccccCCc-cccCCCccccChhHhcCCCCCCchhhHHHHHHHH
Confidence                              000000001457999999999765433 345699999999999876 567899999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||..         ......+..  +.                                       ...++..
T Consensus       222 ~~l~~~~~~~~~---------~~~~~~~~~--~~---------------------------------------~~~~~~~  251 (289)
T 1x8b_A          222 VCAAGAEPLPRN---------GDQWHEIRQ--GR---------------------------------------LPRIPQV  251 (289)
T ss_dssp             HHHTTCCCCCSS---------SHHHHHHHT--TC---------------------------------------CCCCSSC
T ss_pred             HHHhcCCCCCcc---------hhHHHHHHc--CC---------------------------------------CCCCCcc
Confidence            999999987732         111111110  00                                       0122345


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .++.+.+||.+||+.||.+|||+.|+|+||||+...
T Consensus       252 ~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  287 (289)
T 1x8b_A          252 LSQEFTELLKVMIHPDPERRPSAMALVKHSVLLSAS  287 (289)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHTCTTC----
T ss_pred             cCHHHHHHHHHHhCCCcccCCCHHHHhhChHhhhhc
Confidence            578899999999999999999999999999998643

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=3.3e-46  Score=378.50  Aligned_cols=274  Identities=25%  Similarity=0.301  Sum_probs=188.8

Q ss_pred             ccccCcEeeCCCEEEEE-EeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           32 AVRMGDTFKNGRYVVQS-KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        32 ~~~~g~~~~~~~y~i~~-~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      |......+ .++|.+.+ .||+|+||+||+|+++.+++.||||++....    ...+|+..+.++.     .||||++++
T Consensus        19 p~~~~~~~-~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~-----~h~~i~~~~   88 (336)
T 3fhr_A           19 PEPKKYAV-TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQAS-----GGPHIVCIL   88 (336)
T ss_dssp             -CCBCSCG-GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHT-----TSTTBCCEE
T ss_pred             CCCCCccc-cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhc-----CCCChHHHH
Confidence            33334444 57899965 5999999999999999999999999987643    3334554443332     789999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ++|......+..++|||||| +++|.+++.......+++..++.++.||+.||.|||++ ||+||||||+|||++.... 
T Consensus        89 ~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~-~ivH~dlkp~NIll~~~~~-  166 (336)
T 3fhr_A           89 DVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH-NIAHRDVKPENLLYTSKEK-  166 (336)
T ss_dssp             EEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCSST-
T ss_pred             HHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEEecCC-
Confidence            99986544467799999999 88999999866555699999999999999999999997 9999999999999954110 


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (336)
T 3fhr_A          167 --------------------------------------------------------------------------------  166 (336)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                      ...++|+|||++..... ......||+.|+|||++.+..++.++||||
T Consensus       167 --------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s  214 (336)
T 3fhr_A          167 --------------------------------DAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWS  214 (336)
T ss_dssp             --------------------------------TCCEEECCCTTCEEC----------------------CHHHHHHHHHH
T ss_pred             --------------------------------CceEEEeccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHH
Confidence                                            34599999999975433 234567899999999998888999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||..........  .....+...                                      ......
T Consensus       215 lG~il~~l~~g~~pf~~~~~~~~~~--~~~~~~~~~--------------------------------------~~~~~~  254 (336)
T 3fhr_A          215 LGVIMYILLCGFPPFYSNTGQAISP--GMKRRIRLG--------------------------------------QYGFPN  254 (336)
T ss_dssp             HHHHHHHHHHSSCCC-------------------------------------------------------------CCCT
T ss_pred             HHHHHHHHHHCCCCCCCccchhhhh--hHHHhhhcc--------------------------------------ccccCc
Confidence            9999999999999996543211100  000000000                                      000000


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ......++++.+||.+||..||.+|||+.|+|+||||+...
T Consensus       255 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  295 (336)
T 3fhr_A          255 PEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQSM  295 (336)
T ss_dssp             TTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTGG
T ss_pred             hhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccccc
Confidence            11234578899999999999999999999999999998643

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-45  Score=376.17  Aligned_cols=256  Identities=25%  Similarity=0.366  Sum_probs=206.1

Q ss_pred             CCCEEEEEEeccccceEEEEEEeC---CCCeEEEEEEecccc-----cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~-----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      .++|++.++||+|+||+||+|++.   .+++.||||+++...     ...+.+.+|+.+|+++.     .||||++++++
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~~  127 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-----QSPFLVTLHYA  127 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHH-----TCTTBCCEEEE
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHcc-----CCCceeEEEEE
Confidence            478999999999999999999984   579999999987532     23456778999999996     58899999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +..    ...+||||||+ +++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+||||+.      
T Consensus       128 ~~~----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~------  194 (355)
T 1vzo_A          128 FQT----ETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKL-GIIYRDIKLENILLDS------  194 (355)
T ss_dssp             EEE----TTEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT------
T ss_pred             Eee----CceEEEEeecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEECC------
Confidence            984    47899999999 88999998754  3599999999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       195 --------------------------------------------------------------------------------  194 (355)
T 1vzo_A          195 --------------------------------------------------------------------------------  194 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcC--CCCCCcch
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLG--SKYSTPAD  345 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~--~~~~~~~D  345 (530)
                                                    ++.+||+|||++.....    .....+||+.|+|||++.+  ..++.++|
T Consensus       195 ------------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~D  244 (355)
T 1vzo_A          195 ------------------------------NGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVD  244 (355)
T ss_dssp             ------------------------------TSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHH
T ss_pred             ------------------------------CCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhh
Confidence                                          46799999999975321    2334579999999999986  34789999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|+|++|..||.......   ....+.  ..+                                       ..
T Consensus       245 vwslG~il~ell~g~~pf~~~~~~~---~~~~~~--~~~---------------------------------------~~  280 (355)
T 1vzo_A          245 WWSLGVLMYELLTGASPFTVDGEKN---SQAEIS--RRI---------------------------------------LK  280 (355)
T ss_dssp             HHHHHHHHHHHHHSSCTTSCTTSCC---CHHHHH--HHH---------------------------------------HH
T ss_pred             HHHHHHHHHHHHHCCCCCccCCccc---hHHHHH--HHH---------------------------------------hc
Confidence            9999999999999999996443211   111111  111                                       11


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      ....++...+..+.+||.+||..||.+||     +++|+++||||+..
T Consensus       281 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~  328 (355)
T 1vzo_A          281 SEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKI  328 (355)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTC
T ss_pred             cCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcC
Confidence            11233455678899999999999999999     99999999999864

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=3.7e-45  Score=362.05  Aligned_cols=258  Identities=24%  Similarity=0.362  Sum_probs=190.6

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccch--HHHHHHHHH-HHHhhcCCCCCCcceeEecceeeec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYT--EAALDEIKI-LKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~--~~~~~Ei~i-l~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ..++|++.++||+|+||+||+|++..+++.||||+++......  .....|... ++.+      .||||+++++++.  
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~iv~~~~~~~--   76 (290)
T 3fme_A            5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTV------DCPFTVTFYGALF--   76 (290)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEE--
T ss_pred             cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhC------CCCeEEEEeeeee--
Confidence            4689999999999999999999999999999999987653222  222223332 3333      7999999999998  


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                        .....|+||||++++|.+++...  ....+++..++.++.||+.||+|||+++||+||||||+|||++.         
T Consensus        77 --~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~---------  145 (290)
T 3fme_A           77 --REGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINA---------  145 (290)
T ss_dssp             --CSSSEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECT---------
T ss_pred             --ccCCEEEEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECC---------
Confidence              44689999999988998887643  23459999999999999999999998559999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (290)
T 3fme_A          146 --------------------------------------------------------------------------------  145 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhh----cCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVL----LGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l----~~~~~~~~~DiWS  348 (530)
                                                 +..++|+|||++......  .....||+.|+|||++    .+..++.++||||
T Consensus       146 ---------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~s  198 (290)
T 3fme_A          146 ---------------------------LGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWS  198 (290)
T ss_dssp             ---------------------------TCCEEBCCC---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHH
T ss_pred             ---------------------------CCCEEEeecCCcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHH
Confidence                                       457999999999754332  2334799999999996    4556899999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||....     .....+..+...  ..+                                      .
T Consensus       199 lG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~--~~~--------------------------------------~  233 (290)
T 3fme_A          199 LGITMIELAILRFPYDSWG-----TPFQQLKQVVEE--PSP--------------------------------------Q  233 (290)
T ss_dssp             HHHHHHHHHHTSCSSCCCS-----CHHHHHHHHHHS--CCC--------------------------------------C
T ss_pred             HHHHHHHHHHCCCCccccC-----chHHHHHHHhcc--CCC--------------------------------------C
Confidence            9999999999999996422     112222211110  000                                      0


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ......++++.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       234 ~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~  273 (290)
T 3fme_A          234 LPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLH  273 (290)
T ss_dssp             CCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             cccccCCHHHHHHHHHHhhcChhhCcCHHHHHhCcccccC
Confidence            0112356789999999999999999999999999999853

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=1.8e-45  Score=367.36  Aligned_cols=259  Identities=27%  Similarity=0.404  Sum_probs=207.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|.+.+.||+|+||+||+|++..+|+.||||+++.... ....+.+|+.+++++      .||||+++++++.    .
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~----~   77 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKI------KHENIVTLEDIYE----S   77 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHC------CCTTBCCEEEEEE----C
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhC------CCCCeeehhhhcc----c
Confidence            4789999999999999999999999999999999876532 345678999999999      7888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....|+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||+....           
T Consensus        78 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dikp~NIl~~~~~-----------  143 (304)
T 2jam_A           78 TTHYYLVMQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHEN-GIVHRDLKPENLLYLTPE-----------  143 (304)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCSCCGGGCEESSSS-----------
T ss_pred             CCEEEEEEEcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEecCC-----------
Confidence            57899999999 88999988643  3489999999999999999999997 999999999999993210           


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (304)
T 2jam_A          144 --------------------------------------------------------------------------------  143 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                            ....++|+|||++...... .....||+.|+|||++.+..++.++|||||||++|+|+
T Consensus       144 ----------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  201 (304)
T 2jam_A          144 ----------------------ENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILL  201 (304)
T ss_dssp             ----------------------TTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCCEEEccCCcceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHH
Confidence                                  0457999999998654322 23346899999999999989999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|..||....      .......+.......                                      ........++.
T Consensus       202 ~g~~pf~~~~------~~~~~~~i~~~~~~~--------------------------------------~~~~~~~~~~~  237 (304)
T 2jam_A          202 CGYPPFYEET------ESKLFEKIKEGYYEF--------------------------------------ESPFWDDISES  237 (304)
T ss_dssp             HSSCTTTTSC------HHHHHHHHHHCCCCC--------------------------------------CTTTTTTSCHH
T ss_pred             HCCCCCCCCC------HHHHHHHHHcCCCCC--------------------------------------CccccccCCHH
Confidence            9999996432      122222221110000                                      00122345688


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +.+||.+||..||.+|||+.|+|+||||+...
T Consensus       238 ~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  269 (304)
T 2jam_A          238 AKDFICHLLEKDPNERYTCEKALSHPWIDGNT  269 (304)
T ss_dssp             HHHHHHHHHCSSTTTSCCHHHHHTSHHHHSSC
T ss_pred             HHHHHHHHcCCChhHCcCHHHHhcCccccCCC
Confidence            99999999999999999999999999998643

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=1.3e-44  Score=359.76  Aligned_cols=256  Identities=25%  Similarity=0.383  Sum_probs=208.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----------cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----------HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||||++....          ...+.+.+|+.+++++.     .||||++++
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~   90 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS-----GHPNIIQLK   90 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHT-----TCTTBCCEE
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhc-----CCCCEeeee
Confidence            589999999999999999999999999999999986542          22456778999999994     589999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      +++.    .....++||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++.    
T Consensus        91 ~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~~----  159 (298)
T 1phk_A           91 DTYE----TNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKL-NIVHRDLKPENILLDD----  159 (298)
T ss_dssp             EEEE----CSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT----
T ss_pred             eeec----cCCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcceEEEcC----
Confidence            9998    457899999999 78999999753  3599999999999999999999997 9999999999999954    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (298)
T 1phk_A          160 --------------------------------------------------------------------------------  159 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhc------CCCCC
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLL------GSKYS  341 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~------~~~~~  341 (530)
                                                      ++.++|+|||++....  .......||+.|+|||++.      ...++
T Consensus       160 --------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~  207 (298)
T 1phk_A          160 --------------------------------DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYG  207 (298)
T ss_dssp             --------------------------------TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBC
T ss_pred             --------------------------------CCcEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCC
Confidence                                            4579999999997543  2345567999999999985      45689


Q ss_pred             CcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCch
Q 045988          342 TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       342 ~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      .++|||||||++|+|++|..||....      .......+.......+                                
T Consensus       208 ~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~--------------------------------  249 (298)
T 1phk_A          208 KEVDMWSTGVIMYTLLAGSPPFWHRK------QMLMLRMIMSGNYQFG--------------------------------  249 (298)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCC--------------------------------
T ss_pred             cccccHhHHHHHHHHHHCCCCCcCcc------HHHHHHHHhcCCcccC--------------------------------
Confidence            99999999999999999999996432      1222222111000000                                


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                            .......+..+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       250 ------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  290 (298)
T 1phk_A          250 ------SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQY  290 (298)
T ss_dssp             ------TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTT
T ss_pred             ------cccccccCHHHHHHHHHHccCCcccCCCHHHHHhChHhhhc
Confidence                  00112456789999999999999999999999999999854

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.8e-45  Score=361.80  Aligned_cols=252  Identities=28%  Similarity=0.431  Sum_probs=200.6

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|.+.+.||+|+||.||+|.+..+++.||||++....    .....+.+|+.+++.+      .||||+++++++. 
T Consensus         9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~-   81 (276)
T 2h6d_A            9 KIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLF------RHPHIIKLYQVIS-   81 (276)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC------CCTTBCCEEEEEE-
T ss_pred             eeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcC------CCCCEeEEEEEEe-
Confidence            3689999999999999999999999999999999986542    2345778899999988      7888999999998 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         .....|+||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++.         
T Consensus        82 ---~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~~---------  146 (276)
T 2h6d_A           82 ---TPTDFFMVMEYVSGGELFDYICKH--GRVEEMEARRLFQQILSAVDYCHRH-MVVHRDLKPENVLLDA---------  146 (276)
T ss_dssp             ---CSSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHH-CSSCCCCCGGGEEECT---------
T ss_pred             ---cCCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCChhhEEECC---------
Confidence               457899999999 88999999754  3489999999999999999999998 9999999999999954         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (276)
T 2h6d_A          147 --------------------------------------------------------------------------------  146 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCC-CCcchhHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKY-STPADLWSFAC  351 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~-~~~~DiWSlG~  351 (530)
                                                 ++.++|+|||++......  .....||+.|+|||++.+..+ +.++|||||||
T Consensus       147 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~  199 (276)
T 2h6d_A          147 ---------------------------HMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGV  199 (276)
T ss_dssp             ---------------------------TSCEEECCCCGGGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHH
T ss_pred             ---------------------------CCCEEEeecccccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHH
Confidence                                       457999999999764322  345578999999999988765 68999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|..||....      .......+.                                          .....++
T Consensus       200 ~l~~l~~g~~p~~~~~------~~~~~~~~~------------------------------------------~~~~~~~  231 (276)
T 2h6d_A          200 ILYALLCGTLPFDDEH------VPTLFKKIR------------------------------------------GGVFYIP  231 (276)
T ss_dssp             HHHHHHHSSCSSCCSS------HHHHHHHHH------------------------------------------HCCCCCC
T ss_pred             HHHHHHhCCCCCCCCc------HHHHHHHhh------------------------------------------cCcccCc
Confidence            9999999999996422      111111110                                          0111233


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ...+..+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       232 ~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~  268 (276)
T 2h6d_A          232 EYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQD  268 (276)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             hhcCHHHHHHHHHHccCChhhCCCHHHHHhChhhccC
Confidence            4456789999999999999999999999999999865

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=8.7e-45  Score=361.03  Aligned_cols=262  Identities=24%  Similarity=0.329  Sum_probs=206.1

Q ss_pred             cccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           33 VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        33 ~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      ..+|+.+ .++|++.+.||+|+||.||+|++..+++.||||++....    .....+.+|+.+++++      .||||++
T Consensus         3 ~~~g~~~-~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~hp~iv~   75 (294)
T 4eqm_A            3 HMIGKII-NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQL------SHQNIVS   75 (294)
T ss_dssp             -CCSSCE-ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTC------CBTTBCC
T ss_pred             cchhhHh-hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcC------CCCCCce
Confidence            3578888 689999999999999999999999999999999875432    2345678899999888      7888999


Q ss_pred             ecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      +++++.    .....|+||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.  
T Consensus        76 ~~~~~~----~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~Dlkp~Nil~~~--  146 (294)
T 4eqm_A           76 MIDVDE----EDDCYYLVMEYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAHDM-RIVHRDIKPQNILIDS--  146 (294)
T ss_dssp             EEEEEE----CSSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT--
T ss_pred             EEEeee----eCCeEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEECC--
Confidence            999998    557899999999 88999999754  3599999999999999999999997 9999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (294)
T 4eqm_A          147 --------------------------------------------------------------------------------  146 (294)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCc
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTP  343 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~  343 (530)
                                                        ++.++|+|||++......    ....+||+.|+|||++.+..++.+
T Consensus       147 ----------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  192 (294)
T 4eqm_A          147 ----------------------------------NKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDEC  192 (294)
T ss_dssp             ----------------------------------TSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTT
T ss_pred             ----------------------------------CCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCch
Confidence                                              457999999999754322    234579999999999999999999


Q ss_pred             chhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhh
Q 045988          344 ADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       344 ~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      +|||||||++|+|++|..||.+..      .....  +..+.+..+..                                
T Consensus       193 ~Di~slG~~l~~ll~g~~pf~~~~------~~~~~--~~~~~~~~~~~--------------------------------  232 (294)
T 4eqm_A          193 TDIYSIGIVLYEMLVGEPPFNGET------AVSIA--IKHIQDSVPNV--------------------------------  232 (294)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCSSC------HHHHH--HHHHSSCCCCH--------------------------------
T ss_pred             HhHHHHHHHHHHHHhCCCCCCCCC------hHHHH--HHHhhccCCCc--------------------------------
Confidence            999999999999999999996432      11111  11111111100                                


Q ss_pred             hhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       424 ~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                         ........++.+.+||.+||..||.+||+..+.|.+.|...
T Consensus       233 ---~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~  273 (294)
T 4eqm_A          233 ---TTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSV  273 (294)
T ss_dssp             ---HHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTS
T ss_pred             ---chhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHH
Confidence               01223456788999999999999999997777777776553

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=5.7e-45  Score=363.05  Aligned_cols=266  Identities=29%  Similarity=0.413  Sum_probs=206.9

Q ss_pred             CccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCccee
Q 045988           29 GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVV  107 (530)
Q Consensus        29 ~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv  107 (530)
                      .|.++..+..+ .++|++++.||+|+||.||+|.+..+++.||+|++.... .....+.+|+.+++.+      .||||+
T Consensus         7 ~~~~~~~~~~~-~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~   79 (302)
T 2j7t_A            7 EYEHVRRDLDP-NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATC------DHPYIV   79 (302)
T ss_dssp             ---CCBSSSCG-GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHC------CCTTBC
T ss_pred             hhcccccccCC-ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcC------CCCCEe
Confidence            35556666555 689999999999999999999999999999999886543 3457788999999998      788999


Q ss_pred             EecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          108 KLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       108 ~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      ++++++..    ....++||||+ +++|.+++... ...+++..+..++.||+.||.|||++ ||+||||||+|||++. 
T Consensus        80 ~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~~-  152 (302)
T 2j7t_A           80 KLLGAYYH----DGKLWIMIEFCPGGAVDAIMLEL-DRGLTEPQIQVVCRQMLEALNFLHSK-RIIHRDLKAGNVLMTL-  152 (302)
T ss_dssp             CEEEEEEC----C-CEEEEEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEECT-
T ss_pred             eeeeeeee----CCeEEEEEEeCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCHHHEEECC-
Confidence            99999984    46899999999 78898887643 34599999999999999999999997 9999999999999954 


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (302)
T 2j7t_A          153 --------------------------------------------------------------------------------  152 (302)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhc-----CC
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLL-----GS  338 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~-----~~  338 (530)
                                                         ++.++|+|||++....   .......||+.|+|||++.     +.
T Consensus       153 -----------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  197 (302)
T 2j7t_A          153 -----------------------------------EGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDT  197 (302)
T ss_dssp             -----------------------------------TSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTST
T ss_pred             -----------------------------------CCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCC
Confidence                                               4569999999875422   2234567999999999984     66


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccC
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (530)
                      .++.++|||||||++|+|++|..||....      ....+   .......+.                            
T Consensus       198 ~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~---~~~~~~~~~----------------------------  240 (302)
T 2j7t_A          198 PYDYKADIWSLGITLIEMAQIEPPHHELN------PMRVL---LKIAKSDPP----------------------------  240 (302)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHH---HHHHHSCCC----------------------------
T ss_pred             CCchhhhHHHHHHHHHHHhcCCCCCccCC------HHHHH---HHHhccCCc----------------------------
Confidence            78999999999999999999999996432      11111   111100000                            


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                              ....+...+..+.+||.+||..||.+|||+.++|+||||+..
T Consensus       241 --------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  282 (302)
T 2j7t_A          241 --------TLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSI  282 (302)
T ss_dssp             --------CCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTSTTTTTC
T ss_pred             --------ccCCccccCHHHHHHHHHHcccChhhCCCHHHHhcChHHhhh
Confidence                    001123456789999999999999999999999999999853

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=2.2e-44  Score=363.99  Aligned_cols=263  Identities=21%  Similarity=0.259  Sum_probs=205.5

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +|..+.+++|++.+.||+|+||+||+|.+..+++.||||++..... ...+.+|+.++++|.     .||||+++++++.
T Consensus         2 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~E~~~l~~l~-----~h~~i~~~~~~~~   75 (330)
T 2izr_A            2 MGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR-APQLHLEYRFYKQLG-----SGDGIPQVYYFGP   75 (330)
T ss_dssp             --CCEETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS-SCCHHHHHHHHHHHC-----SCTTSCCEEEEEE
T ss_pred             CceEEEcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc-hHHHHHHHHHHHHhh-----CCCCCCEEEEEEe
Confidence            4566668899999999999999999999999999999999876533 456889999999995     6888999999998


Q ss_pred             ecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                      .    +...+|||||++++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.....     
T Consensus        76 ~----~~~~~lv~e~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~-~iiHrDlkp~Nill~~~~~~-----  144 (330)
T 2izr_A           76 C----GKYNAMVLELLGPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSK-NLIYRDVKPENFLIGRPGNK-----  144 (330)
T ss_dssp             E----TTEEEEEEECCCCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECCGGGT-----
T ss_pred             c----CCccEEEEEeCCCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeeeccCCCC-----
Confidence            4    4789999999999999999754 34599999999999999999999997 99999999999999652100     


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (330)
T 2izr_A          145 --------------------------------------------------------------------------------  144 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------cCCCCCCCCccCChhhcCCCCCCcc
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------FTNDIQTRQYRCPEVLLGSKYSTPA  344 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------~~~~~gt~~y~aPE~l~~~~~~~~~  344 (530)
                                                ....++|+|||++......          ....+||+.|+|||++.+..++.++
T Consensus       145 --------------------------~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  198 (330)
T 2izr_A          145 --------------------------TQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRD  198 (330)
T ss_dssp             --------------------------CTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHH
T ss_pred             --------------------------CCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchh
Confidence                                      0234999999999753321          2456899999999999999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      |||||||++|+|++|..||.+.....   ....+..+.......+..                                 
T Consensus       199 Di~slG~il~ell~g~~Pf~~~~~~~---~~~~~~~i~~~~~~~~~~---------------------------------  242 (330)
T 2izr_A          199 DLEALGHMFMYFLRGSLPWQGLKADT---LKERYQKIGDTKRATPIE---------------------------------  242 (330)
T ss_dssp             HHHHHHHHHHHHHHSSCTTTTCCCSS---HHHHHHHHHHHHHHSCHH---------------------------------
T ss_pred             HHHHHHHHHHHHhcCCCCcccccccc---HHHHHHHHHhhhccCCHH---------------------------------
Confidence            99999999999999999997653211   111122111110000000                                 


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                          ......+ ++.+||..||..||.+||+++++++
T Consensus       243 ----~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          243 ----VLCENFP-EMATYLRYVRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             ----HHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             ----HHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHH
Confidence                0011234 8999999999999999999998876

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=9.7e-45  Score=356.41  Aligned_cols=256  Identities=26%  Similarity=0.336  Sum_probs=206.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||||++....  ...+.+.+|+.+++.+      .||||+++++++..   
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~---   76 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML------NHENVVKFYGHRRE---   76 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTC------CCTTBCCEEEEEEE---
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhc------CCCCceeeeeEEEc---
Confidence            368999999999999999999999999999999986543  3346788999999988      78899999999984   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       +...|+||||+ +++|.+++..  ...+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        77 -~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nil~~~------------  140 (276)
T 2yex_A           77 -GNIQYLFLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHGI-GITHRDIKPENLLLDE------------  140 (276)
T ss_dssp             -TTEEEEEEECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT------------
T ss_pred             -CCEEEEEEEecCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCChHHEEEcc------------
Confidence             47899999999 7799888753  33599999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (276)
T 2yex_A          141 --------------------------------------------------------------------------------  140 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-----cccCCCCCCCCccCChhhcCCCC-CCcchhHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-----KQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFAC  351 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-----~~~~~~~gt~~y~aPE~l~~~~~-~~~~DiWSlG~  351 (530)
                                              ++.++|+|||.+....     .......||+.|+|||++.+..+ +.++|||||||
T Consensus       141 ------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~  196 (276)
T 2yex_A          141 ------------------------RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGI  196 (276)
T ss_dssp             ------------------------TCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHH
Confidence                                    4569999999996532     12345679999999999988765 77899999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|..||......     ......+...   .                                     ......
T Consensus       197 il~~l~~g~~p~~~~~~~-----~~~~~~~~~~---~-------------------------------------~~~~~~  231 (276)
T 2yex_A          197 VLTAMLAGELPWDQPSDS-----CQEYSDWKEK---K-------------------------------------TYLNPW  231 (276)
T ss_dssp             HHHHHHHSSCCCSCSCTT-----SHHHHHHHTT---C-------------------------------------TTSTTG
T ss_pred             HHHHHHhCCCCCCCCchH-----HHHHHHhhhc---c-------------------------------------cccCch
Confidence            999999999999654311     1111111000   0                                     000111


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ...++.+.+||.+||..||.+|||+.|+|+||||+....
T Consensus       232 ~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~~  270 (276)
T 2yex_A          232 KKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPLK  270 (276)
T ss_dssp             GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCCCC
T ss_pred             hhcCHHHHHHHHHHCCCCchhCCCHHHHhcCccccChhh
Confidence            245678999999999999999999999999999986543

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.9e-44  Score=361.42  Aligned_cols=255  Identities=27%  Similarity=0.390  Sum_probs=204.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.+.||+|+||.||+|.+..+|+.||||++.... ....+.+|+.+++++      .||||+++++++..    .
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----~   96 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-DLQEIIKEISIMQQC------DSPHVVKYYGSYFK----N   96 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-CCHHHHHHHHHHHTC------CCTTBCCEEEEEEE----T
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-HHHHHHHHHHHHHhC------CCCCCccEEEEEEe----C
Confidence            578999999999999999999999999999999987654 356788999999998      78899999999984    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ...|+||||+ +++|.+++... ...+++..+..++.||+.||.|||++ ||+||||||+|||++.              
T Consensus        97 ~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dl~p~Nil~~~--------------  160 (314)
T 3com_A           97 TDLWIVMEYCGAGSVSDIIRLR-NKTLTEDEIATILQSTLKGLEYLHFM-RKIHRDIKAGNILLNT--------------  160 (314)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT--------------
T ss_pred             CEEEEEeecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhC-CCcCCCcCHHHEEECC--------------
Confidence            6899999999 77999988643 34599999999999999999999997 9999999999999954              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (314)
T 3com_A          161 --------------------------------------------------------------------------------  160 (314)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                            ++.++|+|||++......   .....||+.|+|||++.+..++.++|||||||++|+|
T Consensus       161 ----------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  218 (314)
T 3com_A          161 ----------------------EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEM  218 (314)
T ss_dssp             ----------------------TCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHH
Confidence                                  457999999999654322   3456789999999999998999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|..||....         ....+.......+.                                    .+..+...+.
T Consensus       219 ~~g~~p~~~~~---------~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~  253 (314)
T 3com_A          219 AEGKPPYADIH---------PMRAIFMIPTNPPP------------------------------------TFRKPELWSD  253 (314)
T ss_dssp             HHSSCTTTTSC---------HHHHHHHHHHSCCC------------------------------------CCSSGGGSCH
T ss_pred             HhCCCCCCCCC---------hHHHHHHHhcCCCc------------------------------------ccCCcccCCH
Confidence            99999996322         11111111100000                                    0111233467


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .+.+||.+||..||.+|||+.++|+||||+...
T Consensus       254 ~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~~~~  286 (314)
T 3com_A          254 NFTDFVKQCLVKSPEQRATATQLLQHPFVRSAK  286 (314)
T ss_dssp             HHHHHHHHHTCSCTTTSCCHHHHTTSHHHHTCC
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHhCHHHhcCC
Confidence            899999999999999999999999999998654

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.3e-44  Score=364.25  Aligned_cols=257  Identities=27%  Similarity=0.421  Sum_probs=200.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---------cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      .++|.+.+.||+|+||.||+|++..+++.||||++....         .....+.+|+.+|+++      .||||+++++
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~   82 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL------NHPCIIKIKN   82 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHC------CCTTBCCEEE
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhC------CCCCCceEee
Confidence            468999999999999999999999999999999986532         1234577899999999      7889999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ++...     ..|+||||+ +++|.+++..  ...+++..+..++.||+.||+|||++ ||+||||||+|||++....  
T Consensus        83 ~~~~~-----~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~NIl~~~~~~--  152 (322)
T 2ycf_A           83 FFDAE-----DYYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLHEN-GIIHRDLKPENVLLSSQEE--  152 (322)
T ss_dssp             EEESS-----SEEEEEECCTTEETHHHHST--TCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESSSSS--
T ss_pred             EEcCC-----ceEEEEecCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEEecCCC--
Confidence            98732     389999999 7899998863  34599999999999999999999997 9999999999999954110  


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (322)
T 2ycf_A          153 --------------------------------------------------------------------------------  152 (322)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhc---CCCCCCcch
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLL---GSKYSTPAD  345 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~---~~~~~~~~D  345 (530)
                                                     ...+||+|||++......  .....||+.|+|||++.   ...++.++|
T Consensus       153 -------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~D  201 (322)
T 2ycf_A          153 -------------------------------DCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVD  201 (322)
T ss_dssp             -------------------------------SCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHH
T ss_pred             -------------------------------CCeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhh
Confidence                                           245999999999764322  22346899999999974   456899999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|+|++|..||......     ......+.........                                   
T Consensus       202 i~slG~il~~l~~g~~pf~~~~~~-----~~~~~~~~~~~~~~~~-----------------------------------  241 (322)
T 2ycf_A          202 CWSLGVILFICLSGYPPFSEHRTQ-----VSLKDQITSGKYNFIP-----------------------------------  241 (322)
T ss_dssp             HHHHHHHHHHHHHSSCSSCSTTCS-----SCHHHHHHHTCCCCCH-----------------------------------
T ss_pred             HHHHHHHHHHHHhCCCCCcccchH-----HHHHHHHHhCccccCc-----------------------------------
Confidence            999999999999999999643311     1111111110000000                                   


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                         ......+..+.+||.+||..||.+|||+.++|+||||+.
T Consensus       242 ---~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h~~~~~  280 (322)
T 2ycf_A          242 ---EVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQD  280 (322)
T ss_dssp             ---HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGCC
T ss_pred             ---hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhCcCcCC
Confidence               001234678999999999999999999999999999974

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=359.43  Aligned_cols=251  Identities=20%  Similarity=0.256  Sum_probs=205.4

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc-ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .+..++|.+.++||+|+||+||+|.+..+++.||+|++... ......+.+|+.+++++      .||||+++++++.. 
T Consensus         6 ~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~-   78 (310)
T 3s95_A            6 IFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCL------EHPNVLKFIGVLYK-   78 (310)
T ss_dssp             EECGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEEE-
T ss_pred             eeChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhC------CCcCcccEEEEEec-
Confidence            45678999999999999999999999999999999987553 34456788999999998      78899999999984 


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                         ....++||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.          
T Consensus        79 ---~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~dlkp~Nil~~~----------  143 (310)
T 3s95_A           79 ---DKRLNFITEYIKGGTLRGIIKSM-DSQYPWSQRVSFAKDIASGMAYLHSM-NIIHRDLNSHNCLVRE----------  143 (310)
T ss_dssp             ---TTEEEEEEECCTTCBHHHHHHHC-CTTSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSTTSEEECT----------
T ss_pred             ---CCeeEEEEEecCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCCcCeEEECC----------
Confidence               47899999999 88999999753 34599999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (310)
T 3s95_A          144 --------------------------------------------------------------------------------  143 (310)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----------------cCCCCCCCCccCChhhcCC
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----------------FTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----------------~~~~~gt~~y~aPE~l~~~  338 (530)
                                                ++.+||+|||++......                 ....+||+.|+|||++.+.
T Consensus       144 --------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  197 (310)
T 3s95_A          144 --------------------------NKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGR  197 (310)
T ss_dssp             --------------------------TSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTC
T ss_pred             --------------------------CCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCC
Confidence                                      467999999999653221                 1155799999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccC
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (530)
                      .++.++|||||||++|+|++|..||...............                                        
T Consensus       198 ~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~----------------------------------------  237 (310)
T 3s95_A          198 SYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVR----------------------------------------  237 (310)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHH----------------------------------------
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhh----------------------------------------
Confidence            9999999999999999999999999654322211000000                                        


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                         .  ......+...++.+.+||.+||+.||.+|||+.++++
T Consensus       238 ---~--~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          238 ---G--FLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             ---H--HHHHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---c--cccccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence               0  0011234456678999999999999999999999987

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.7e-44  Score=361.54  Aligned_cols=256  Identities=24%  Similarity=0.427  Sum_probs=200.7

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-------chHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-------YTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      ++.+ .++|++.+.||+|+||.||+|++..+++.||||++.....       ....+.+|+.+++++....  .|+||++
T Consensus        26 ~~~~-~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~--~h~~i~~  102 (312)
T 2iwi_A           26 REAF-EAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGG--GHPGVIR  102 (312)
T ss_dssp             --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSC--CCSSBCC
T ss_pred             hhhh-hhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccC--CCCCeee
Confidence            4455 6799999999999999999999999999999999876432       2334567999999996544  6899999


Q ss_pred             ecceeeecCCCCcEEEEEEec-c-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          109 LLDHFKHSGPNGQHVCMVFEY-L-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~-~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      +++++..    ....++|||+ + +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++..
T Consensus       103 ~~~~~~~----~~~~~~v~e~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~~  175 (312)
T 2iwi_A          103 LLDWFET----QEGFMLVLERPLPAQDLFDYITEK--GPLGEGPSRCFFGQVVAAIQHCHSR-GVVHRDIKDENILIDLR  175 (312)
T ss_dssp             EEEEC---------CEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHH-TEECCCCSGGGEEEETT
T ss_pred             EEEEEec----CCeEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCChhhEEEeCC
Confidence            9999984    4688999999 5 88999999753  3499999999999999999999998 99999999999999621


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (312)
T 2iwi_A          176 --------------------------------------------------------------------------------  175 (312)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-cccCCCCCCCCccCChhhcCCCC-CCcc
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-KQFTNDIQTRQYRCPEVLLGSKY-STPA  344 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-~~~~~~~gt~~y~aPE~l~~~~~-~~~~  344 (530)
                                                         ++.++|+|||++.... .......||+.|+|||++.+..+ +.++
T Consensus       176 -----------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~  220 (312)
T 2iwi_A          176 -----------------------------------RGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPA  220 (312)
T ss_dssp             -----------------------------------TTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHH
T ss_pred             -----------------------------------CCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccc
Confidence                                               4579999999997643 33456679999999999987665 4589


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      |||||||++|+|++|..||...         ..                                             +.
T Consensus       221 Di~slG~il~~l~~g~~pf~~~---------~~---------------------------------------------~~  246 (312)
T 2iwi_A          221 TVWSLGILLYDMVCGDIPFERD---------QE---------------------------------------------IL  246 (312)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCSH---------HH---------------------------------------------HH
T ss_pred             hHHHHHHHHHHHHHCCCCCCCh---------HH---------------------------------------------Hh
Confidence            9999999999999999999521         00                                             01


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .....++...+..+.+||.+||..||.+|||+.|+|+||||+....
T Consensus       247 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~~~  292 (312)
T 2iwi_A          247 EAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPAE  292 (312)
T ss_dssp             HTCCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC---
T ss_pred             hhccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhcCchh
Confidence            1112234456788999999999999999999999999999997654

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.7e-44  Score=355.47  Aligned_cols=257  Identities=21%  Similarity=0.360  Sum_probs=207.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+.+++++      .||||+++++++... 
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~-   77 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL------KHPNIVRYYDRIIDR-   77 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEEG-
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhc------CCCCCCeEEEEEecC-
Confidence            478999999999999999999999999999999987542   3345678999999999      788999999988654 


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhCC-----ceeccCCCCcEEEeeccCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADY--RGVPLHMVKEICFHILVGLDHLHRELS-----IIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~--~~l~~~~~~~i~~qll~aL~~LH~~~g-----IvHrDIKp~NILl~~~~~~  189 (530)
                       ....+|+||||+ +++|.+++.....  ..+++..+..++.||+.||+|||++ |     |+||||||+|||++.    
T Consensus        78 -~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~~~~~~ivH~dl~p~NIl~~~----  151 (279)
T 2w5a_A           78 -TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR-SDGGHTVLHRDLKPANVFLDG----  151 (279)
T ss_dssp             -GGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH-C------CCCCCSGGGEEECS----
T ss_pred             -CCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc-cCCCCeeEEeccchhhEEEcC----
Confidence             457899999999 7899999875432  3489999999999999999999998 8     999999999999954    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (279)
T 2w5a_A          152 --------------------------------------------------------------------------------  151 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                      ++.++|+|||++......   .....||+.|+|||++.+..++.++||
T Consensus       152 --------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  199 (279)
T 2w5a_A          152 --------------------------------KQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDI  199 (279)
T ss_dssp             --------------------------------SSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHH
T ss_pred             --------------------------------CCCEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhH
Confidence                                            457999999999654322   123468999999999999899999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|..||....      .......+..  +.                                       
T Consensus       200 ~slG~il~~l~~g~~p~~~~~------~~~~~~~i~~--~~---------------------------------------  232 (279)
T 2w5a_A          200 WSLGCLLYELCALMPPFTAFS------QKELAGKIRE--GK---------------------------------------  232 (279)
T ss_dssp             HHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH--TC---------------------------------------
T ss_pred             HHHHHHHHHHHHCCCCCcccC------HHHHHHHHhh--cc---------------------------------------
Confidence            999999999999999996432      1111111110  00                                       


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ...++...+..+.+||.+||..||.+|||+.|+|+|+|++...
T Consensus       233 ~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~  275 (279)
T 2w5a_A          233 FRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLILEHH  275 (279)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGG
T ss_pred             cccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhc
Confidence            0022334568899999999999999999999999999998654

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=5.4e-45  Score=370.77  Aligned_cols=275  Identities=21%  Similarity=0.338  Sum_probs=208.7

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccch------------------HHHHHHHHHHHHhhc
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYT------------------EAALDEIKILKQIAE   97 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~------------------~~~~~Ei~il~~l~~   97 (530)
                      ++.+ .++|++.+.||+|+||.||+|.+  +++.||||++.......                  ..+.+|+.+++++  
T Consensus        26 ~~~~-~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--  100 (348)
T 2pml_X           26 KDKY-INDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDI--  100 (348)
T ss_dssp             SCEE-ETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTC--
T ss_pred             cccc-cCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhC--
Confidence            3444 58999999999999999999998  89999999987543211                  7889999999998  


Q ss_pred             CCCCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHH------HHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hC
Q 045988           98 GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTL------IKYADYRGVPLHMVKEICFHILVGLDHLHR-EL  169 (530)
Q Consensus        98 ~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~------i~~~~~~~l~~~~~~~i~~qll~aL~~LH~-~~  169 (530)
                          .||||+++++++.    ....+|+||||+ +++|.++      +.......+++..+..++.||+.||+|||+ + 
T Consensus       101 ----~h~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~-  171 (348)
T 2pml_X          101 ----KNEYCLTCEGIIT----NYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK-  171 (348)
T ss_dssp             ----CCTTBCCCSEEEE----SSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred             ----CCCCcceEEEEEe----eCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC-
Confidence                7889999999998    457899999999 7799887      543334569999999999999999999998 7 


Q ss_pred             CceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCC
Q 045988          170 SIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSP  249 (530)
Q Consensus       170 gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (530)
                      ||+||||||+|||++.                                                                
T Consensus       172 ~i~H~dl~p~Nil~~~----------------------------------------------------------------  187 (348)
T 2pml_X          172 NICHRDVKPSNILMDK----------------------------------------------------------------  187 (348)
T ss_dssp             CEECCCCCGGGEEECT----------------------------------------------------------------
T ss_pred             CEeecCCChHhEEEcC----------------------------------------------------------------
Confidence            9999999999999954                                                                


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-cccCCCCCCCC
Q 045988          250 DHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-KQFTNDIQTRQ  328 (530)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-~~~~~~~gt~~  328 (530)
                                                                          ++.++|+|||.+.... .......||+.
T Consensus       188 ----------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~  215 (348)
T 2pml_X          188 ----------------------------------------------------NGRVKLSDFGESEYMVDKKIKGSRGTYE  215 (348)
T ss_dssp             ----------------------------------------------------TSCEEECCCTTCEECBTTEECSSCSCGG
T ss_pred             ----------------------------------------------------CCcEEEeccccccccccccccCCCCCcC
Confidence                                                                4579999999997643 23456689999


Q ss_pred             ccCChhhcCC-CCCC-cchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccccc
Q 045988          329 YRCPEVLLGS-KYST-PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRH  406 (530)
Q Consensus       329 y~aPE~l~~~-~~~~-~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  406 (530)
                      |+|||++.+. .++. ++|||||||++|+|++|..||.....     .......+.......|...       ..+... 
T Consensus       216 y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~i~~~~~~~~~~~-------~~~~~~-  282 (348)
T 2pml_X          216 FMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS-----LVELFNNIRTKNIEYPLDR-------NHFLYP-  282 (348)
T ss_dssp             GCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC-----SHHHHHHHTSCCCCCCCSS-------SSSTTT-
T ss_pred             ccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHhccCcCCccch-------hhhhcc-
Confidence            9999999887 5666 99999999999999999999975431     1222222211000000000       000000 


Q ss_pred             CccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          407 GDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                                   ...  ..........+..+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       283 -------------~~~--~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~  329 (348)
T 2pml_X          283 -------------LTN--KKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADT  329 (348)
T ss_dssp             -------------TCC----------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             -------------ccc--cccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCC
Confidence                         000  00011123467889999999999999999999999999999854

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=4.8e-44  Score=358.57  Aligned_cols=257  Identities=23%  Similarity=0.389  Sum_probs=201.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ..++|++.+.||+|+||.||+|.+. +++.||||++....   .....+.+|+.+++++.+    .|+||+++++++.  
T Consensus        26 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~----~~~~iv~~~~~~~--   98 (313)
T 3cek_A           26 KGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQ----HSDKIIRLYDYEI--   98 (313)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGG----GCTTBCCEEEEEE--
T ss_pred             ccceEEEEEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhccc----cCCceEEEEEEee--
Confidence            4678999999999999999999975 58899999986542   234677899999999975    4688999999998  


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ....+|+|||+++++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++.           
T Consensus        99 --~~~~~~lv~e~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIl~~~-----------  162 (313)
T 3cek_A           99 --TDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIVD-----------  162 (313)
T ss_dssp             --CSSEEEEEECCCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEET-----------
T ss_pred             --cCCEEEEEEecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCcccEEEEC-----------
Confidence              45789999997799999999753  4589999999999999999999997 9999999999999932           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (313)
T 3cek_A          163 --------------------------------------------------------------------------------  162 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcC-----------CCC
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLG-----------SKY  340 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~-----------~~~  340 (530)
                                                +.+||+|||++......     .....||+.|+|||++.+           ..+
T Consensus       163 --------------------------~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~  216 (313)
T 3cek_A          163 --------------------------GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKI  216 (313)
T ss_dssp             --------------------------TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CC
T ss_pred             --------------------------CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccC
Confidence                                      46999999999754322     234578999999999976           468


Q ss_pred             CCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          341 STPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       341 ~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      +.++|||||||++|+|++|..||....        .....+.......                                
T Consensus       217 ~~~~Di~slG~il~el~~g~~pf~~~~--------~~~~~~~~~~~~~--------------------------------  256 (313)
T 3cek_A          217 SPKSDVWSLGCILYYMTYGKTPFQQII--------NQISKLHAIIDPN--------------------------------  256 (313)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTTTCC--------SHHHHHHHHHCTT--------------------------------
T ss_pred             CchHHHHHHHHHHHHHHhCCCchhhHH--------HHHHHHHHHHhcc--------------------------------
Confidence            889999999999999999999995322        1111121111100                                


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                           ....++...+..+.+||.+||..||.+|||+.|+|+||||+....
T Consensus       257 -----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~~~~~~~  301 (313)
T 3cek_A          257 -----HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH  301 (313)
T ss_dssp             -----SCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHCC--
T ss_pred             -----cccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcCccccCCCC
Confidence                 001223334678999999999999999999999999999987654

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=6.3e-44  Score=355.92  Aligned_cols=252  Identities=29%  Similarity=0.403  Sum_probs=208.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ..+|++++.||+|+||.||+|++..+++.||||++....  ...+.+.+|+.+++.+      .||||+++++++..   
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~---   91 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYVTKYYGSYLK---   91 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHC------CCTTBCCEEEEEEE---
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhC------CCCCEeEEEEEEec---
Confidence            568999999999999999999999999999999987543  3457788999999998      78889999999984   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ....|+||||+ +++|.+++..   ..+++..+..++.||+.||.|||++ ||+||||||+|||++.            
T Consensus        92 -~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~~------------  154 (303)
T 3a7i_A           92 -DTKLWIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLLSE------------  154 (303)
T ss_dssp             -TTEEEEEEECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT------------
T ss_pred             -CCeEEEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCChheEEECC------------
Confidence             46899999999 7899998853   4599999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (303)
T 3a7i_A          155 --------------------------------------------------------------------------------  154 (303)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                              ++.++|+|||++.....   ......||+.|+|||++.+..++.++|||||||++|
T Consensus       155 ------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  210 (303)
T 3a7i_A          155 ------------------------HGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAI  210 (303)
T ss_dssp             ------------------------TSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHH
Confidence                                    45799999999965432   234567999999999999989999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|..||....      .......+..  +.                                       ...+....
T Consensus       211 ~l~~g~~p~~~~~------~~~~~~~~~~--~~---------------------------------------~~~~~~~~  243 (303)
T 3a7i_A          211 ELARGEPPHSELH------PMKVLFLIPK--NN---------------------------------------PPTLEGNY  243 (303)
T ss_dssp             HHHHSSCTTTTSC------HHHHHHHHHH--SC---------------------------------------CCCCCSSC
T ss_pred             HHccCCCCCCCcC------HHHHHHHhhc--CC---------------------------------------CCCCcccc
Confidence            9999999996322      1111111100  00                                       01123345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +..+.+||.+||+.||.+|||+.|+|+||||....
T Consensus       244 ~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~  278 (303)
T 3a7i_A          244 SKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNA  278 (303)
T ss_dssp             CHHHHHHHHHHCCSSGGGSCCHHHHTTCHHHHHHC
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHhhChhhhcCC
Confidence            67899999999999999999999999999997543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=5.6e-44  Score=357.81  Aligned_cols=253  Identities=22%  Similarity=0.314  Sum_probs=196.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ..++|++.++||+|+||+||+|++  +++.||||++.....   ....+.+|+.+|+++      .||||+++++++.  
T Consensus        35 ~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~--  104 (309)
T 3p86_A           35 PWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRL------RHPNIVLFMGAVT--  104 (309)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEC--
T ss_pred             ChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEE--
Confidence            357999999999999999999975  688999999876532   235678899999999      7888999999998  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCC--ceeccCCCCcEEEeeccCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADY-RGVPLHMVKEICFHILVGLDHLHRELS--IIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~-~~l~~~~~~~i~~qll~aL~~LH~~~g--IvHrDIKp~NILl~~~~~~~~~  192 (530)
                        ....+++||||+ +++|.+++..... ..+++..+..++.||+.||+|||++ |  |+||||||+|||++.       
T Consensus       105 --~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~~~ivH~Dikp~NIll~~-------  174 (309)
T 3p86_A          105 --QPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVDK-------  174 (309)
T ss_dssp             --STTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS-SSCCCCTTCCGGGEEECT-------
T ss_pred             --ECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCEECCCCChhhEEEeC-------
Confidence              446799999999 8899999874321 1289999999999999999999997 9  999999999999954       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (309)
T 3p86_A          175 --------------------------------------------------------------------------------  174 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                   ++.+||+|||++......   .....||+.|+|||++.+..++.++|||||
T Consensus       175 -----------------------------~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  225 (309)
T 3p86_A          175 -----------------------------KYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSF  225 (309)
T ss_dssp             -----------------------------TCCEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHH
T ss_pred             -----------------------------CCcEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHH
Confidence                                         457999999999754332   345679999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|..||....      .......+ ...                                       .....
T Consensus       226 G~il~elltg~~Pf~~~~------~~~~~~~~-~~~---------------------------------------~~~~~  259 (309)
T 3p86_A          226 GVILWELATLQQPWGNLN------PAQVVAAV-GFK---------------------------------------CKRLE  259 (309)
T ss_dssp             HHHHHHHHHCCCTTTTSC------HHHHHHHH-HHS---------------------------------------CCCCC
T ss_pred             HHHHHHHHhCCCCCCCCC------HHHHHHHH-Hhc---------------------------------------CCCCC
Confidence            999999999999996432      11111111 000                                       01123


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhc--CCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLT--HPWINV  467 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~--hp~f~~  467 (530)
                      ++...++.+.+||.+||..||.+|||+.++++  ++|++.
T Consensus       260 ~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          260 IPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred             CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            34556788999999999999999999999998  566664

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1.7e-43  Score=351.52  Aligned_cols=263  Identities=17%  Similarity=0.228  Sum_probs=206.7

Q ss_pred             CcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           36 GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        36 g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      |+.+ .++|++.+.||+|+||.||+|.+..+++.||||++.... ....+.+|+.+++.+.     .|+||+++++++. 
T Consensus         5 ~~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~~~~l~-----~~~~i~~~~~~~~-   76 (298)
T 1csn_A            5 NNVV-GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLA-----GCTGIPNVYYFGQ-   76 (298)
T ss_dssp             -CEE-TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-TSCCHHHHHHHHHHTT-----TCTTCCCEEEEEE-
T ss_pred             Cccc-ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC-ccHHHHHHHHHHHHHh-----cCCCCCeEEeecC-
Confidence            3444 789999999999999999999999999999999887543 2456788999999985     5778999998887 


Q ss_pred             cCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                         .....++||||++++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.....      
T Consensus        77 ---~~~~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dlkp~NIl~~~~~~~------  145 (298)
T 1csn_A           77 ---EGLHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEK-SLVYRDIKPDNFLIGRPNSK------  145 (298)
T ss_dssp             ---ETTEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECCSSST------
T ss_pred             ---CCceeEEEEEecCCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEeccCCCC------
Confidence               457899999999999999997542 3499999999999999999999997 99999999999999652100      


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (298)
T 1csn_A          146 --------------------------------------------------------------------------------  145 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------cCCCCCCCCccCChhhcCCCCCCcch
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------FTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                               ....++|+|||++......          .....||+.|+|||++.+..++.++|
T Consensus       146 -------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  200 (298)
T 1csn_A          146 -------------------------NANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDD  200 (298)
T ss_dssp             -------------------------TTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHH
T ss_pred             -------------------------CCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHH
Confidence                                     0345999999999754322          34557999999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|+|++|..||.......   ....+..+.......+.                                   
T Consensus       201 i~slG~il~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~-----------------------------------  242 (298)
T 1csn_A          201 LEALGHVFMYFLRGSLPWQGLKAAT---NKQKYERIGEKKQSTPL-----------------------------------  242 (298)
T ss_dssp             HHHHHHHHHHHHHSSCTTSSCCSCC---HHHHHHHHHHHHHHSCH-----------------------------------
T ss_pred             HHHHHHHHHHHHcCCCCcchhhccc---cHHHHHHHHhhccCccH-----------------------------------
Confidence            9999999999999999997543211   12222222111100000                                   


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                        .......++++.+||.+||..||.+||++.++++.
T Consensus       243 --~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~  277 (298)
T 1csn_A          243 --RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGL  277 (298)
T ss_dssp             --HHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHH
T ss_pred             --HHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHH
Confidence              01122456789999999999999999999999863

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=6.5e-45  Score=362.40  Aligned_cols=266  Identities=26%  Similarity=0.359  Sum_probs=186.9

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      +..++|++.+.||+|+||.||+|++..+++.||||++....  .....+.+|+.+++++      .||||+++++++.. 
T Consensus        12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~-   84 (303)
T 2vwi_A           12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQC------HHPNIVSYYTSFVV-   84 (303)
T ss_dssp             -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCC------CCTTBCCEEEEEES-
T ss_pred             cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhc------CCCCEeeEEEEEee-
Confidence            44689999999999999999999999999999999876542  2345567788887777      78999999999984 


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhh------ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYA------DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~------~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                         ....++||||+ +++|.+++...      ....+++..+..++.||+.||.|||++ ||+||||||+|||++.    
T Consensus        85 ---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~~----  156 (303)
T 2vwi_A           85 ---KDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN-GQIHRDVKAGNILLGE----  156 (303)
T ss_dssp             ---SSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEECT----
T ss_pred             ---cCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC-CCCCCCCChhhEEEcC----
Confidence               46899999999 88999998742      233489999999999999999999997 9999999999999954    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (303)
T 2vwi_A          157 --------------------------------------------------------------------------------  156 (303)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--------ccCCCCCCCCccCChhhcC-CCC
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--------QFTNDIQTRQYRCPEVLLG-SKY  340 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--------~~~~~~gt~~y~aPE~l~~-~~~  340 (530)
                                                      ++.++|+|||++.....        ......||+.|+|||++.+ ..+
T Consensus       157 --------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  204 (303)
T 2vwi_A          157 --------------------------------DGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGY  204 (303)
T ss_dssp             --------------------------------TCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCC
T ss_pred             --------------------------------CCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCC
Confidence                                            45799999999864321        1234578999999999976 568


Q ss_pred             CCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          341 STPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       341 ~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      +.++|||||||++|+|++|..||....      ....+.   ......+....                           
T Consensus       205 ~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~---~~~~~~~~~~~---------------------------  248 (303)
T 2vwi_A          205 DFKADIWSFGITAIELATGAAPYHKYP------PMKVLM---LTLQNDPPSLE---------------------------  248 (303)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTTTSC------GGGHHH---HHHTSSCCCTT---------------------------
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCccCc------hhhHHH---HHhccCCCccc---------------------------
Confidence            999999999999999999999996533      111111   11111100000                           


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                        ............+..+.+||.+||+.||.+|||+.|+|+||||+...
T Consensus       249 --~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  295 (303)
T 2vwi_A          249 --TGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFFQKAK  295 (303)
T ss_dssp             --C-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTSTTC----
T ss_pred             --cccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhChhhhcCC
Confidence              00001122334567899999999999999999999999999998643

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=8.2e-44  Score=354.05  Aligned_cols=258  Identities=25%  Similarity=0.376  Sum_probs=199.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC---
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG---  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~---  117 (530)
                      .++|++.+.||+|+||.||+|++..+++.||||++.........+.+|+.+++++      .||||+++++++....   
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~~~~~   78 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASL------NHQYVVRYYAAWLERRNFV   78 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEEECCCCC
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhc------CchHHHHHHHHHHhhcchh
Confidence            3589999999999999999999999999999999987666667788999999988      7889999999886421   


Q ss_pred             ------CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          118 ------PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       118 ------~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                            ......|+||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.     
T Consensus        79 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dlkp~Nil~~~-----  151 (303)
T 1zy4_A           79 KPMTAVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALSYIHSQ-GIIHRDLKPMNIFIDE-----  151 (303)
T ss_dssp             C------CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT-----
T ss_pred             hhhcccccCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHHHHHHHhC-CeecccCCHHhEEEcC-----
Confidence                  1357899999999 789999997532 3478899999999999999999997 9999999999999954     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (303)
T 1zy4_A          152 --------------------------------------------------------------------------------  151 (303)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----------------ccCCCCCCCCccCCh
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----------------QFTNDIQTRQYRCPE  333 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----------------~~~~~~gt~~y~aPE  333 (530)
                                                     ++.++|+|||++.....                 ......||+.|+|||
T Consensus       152 -------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE  200 (303)
T 1zy4_A          152 -------------------------------SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATE  200 (303)
T ss_dssp             -------------------------------TSCEEECCCCCCSCTTC-------------------------CTTSCHH
T ss_pred             -------------------------------CCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcc
Confidence                                           45799999999965421                 224457899999999


Q ss_pred             hhcCC-CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccc
Q 045988          334 VLLGS-KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI  412 (530)
Q Consensus       334 ~l~~~-~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  412 (530)
                      ++.+. .++.++|||||||++|+|++   ||..        .......+..+.....                       
T Consensus       201 ~~~~~~~~~~~~Di~slG~il~~l~~---p~~~--------~~~~~~~~~~~~~~~~-----------------------  246 (303)
T 1zy4_A          201 VLDGTGHYNEKIDMYSLGIIFFEMIY---PFST--------GMERVNILKKLRSVSI-----------------------  246 (303)
T ss_dssp             HHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS--------HHHHHHHHHHHHSTTC-----------------------
T ss_pred             cccCCCCCcchhhHHHHHHHHHHHHh---ccCC--------chhHHHHHHhcccccc-----------------------
Confidence            99865 68999999999999999998   5531        1111111111110000                       


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                                  .....++...+..+.+||.+||+.||.+|||+.++|+||||+..
T Consensus       247 ------------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  290 (303)
T 1zy4_A          247 ------------EFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWLPVK  290 (303)
T ss_dssp             ------------CCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHSSCSCCC
T ss_pred             ------------ccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCCCCcCCC
Confidence                        00011233456778999999999999999999999999999743

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=7.3e-44  Score=349.29  Aligned_cols=247  Identities=20%  Similarity=0.349  Sum_probs=203.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|++.+.||+|+||+||+|.+. +++.||+|++.......+.+.+|+.+++++      .||||+++++++.    .
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~----~   76 (269)
T 4hcu_A            8 DPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKL------SHPKLVQLYGVCL----E   76 (269)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHHTC------CCTTBCCEEEEEC----S
T ss_pred             ChhhceeeheecCCCccEEEEEEec-CCCeEEEEEecccccCHHHHHHHHHHHHhC------CCCCEeeEEEEEe----c
Confidence            4578999999999999999999976 577899999988776678899999999999      6888999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....|+||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        77 ~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dikp~Nil~~~-------------  141 (269)
T 4hcu_A           77 QAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEA-CVIHRDLAARNCLVGE-------------  141 (269)
T ss_dssp             SSSEEEEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECG-------------
T ss_pred             CCceEEEEEeCCCCcHHHHHHhc-CcccCHHHHHHHHHHHHHHHHHHHhC-CeecCCcchheEEEcC-------------
Confidence            46799999999 88999998643 34589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (269)
T 4hcu_A          142 --------------------------------------------------------------------------------  141 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                             +..++|+|||++.....    ......+|+.|+|||++.+..++.++|||||||++|
T Consensus       142 -----------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  198 (269)
T 4hcu_A          142 -----------------------NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMW  198 (269)
T ss_dssp             -----------------------GGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             -----------------------CCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHH
Confidence                                   45799999999975432    234456788899999999889999999999999999


Q ss_pred             HHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +|++ |.+||....      .......+...                                         .....+..
T Consensus       199 ~ll~~g~~p~~~~~------~~~~~~~~~~~-----------------------------------------~~~~~~~~  231 (269)
T 4hcu_A          199 EVFSEGKIPYENRS------NSEVVEDISTG-----------------------------------------FRLYKPRL  231 (269)
T ss_dssp             HHHTTSCCTTTTCC------HHHHHHHHHTT-----------------------------------------CCCCCCTT
T ss_pred             HHhcCCCCCCCCCC------HHHHHHHHhcC-----------------------------------------ccCCCCCc
Confidence            9999 999996432      11111111100                                         01112334


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      .++.+.+||.+||+.||.+|||+.|+++|
T Consensus       232 ~~~~~~~li~~~l~~~p~~Rps~~~ll~~  260 (269)
T 4hcu_A          232 ASTHVYQIMNHCWRERPEDRPAFSRLLRQ  260 (269)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence            56789999999999999999999999986

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=5.4e-44  Score=353.73  Aligned_cols=262  Identities=31%  Similarity=0.476  Sum_probs=208.1

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      ....+ .++|++.+.||+|+||.||+|.+..+++.||||++....   .....+.+|+++++++      .||||+++++
T Consensus        16 ~~~~~-~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~   88 (287)
T 2wei_A           16 FQGTF-AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL------DHPNIMKLFE   88 (287)
T ss_dssp             HTHHH-HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTC------CCTTBCCEEE
T ss_pred             HHHHH-hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhc------cCCCccEEEE
Confidence            33444 579999999999999999999999999999999986543   3456788999999998      7888999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ++.    .....++||||+ +++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+|||++...   
T Consensus        89 ~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dl~p~NIlv~~~~---  158 (287)
T 2wei_A           89 ILE----DSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKH-NIVHRDLKPENILLESKE---  158 (287)
T ss_dssp             EEE----CSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESCSS---
T ss_pred             EEe----CCCeEEEEEEccCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCChhhEEEecCC---
Confidence            998    457899999999 88999988643  3499999999999999999999997 999999999999995411   


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (287)
T 2wei_A          159 --------------------------------------------------------------------------------  158 (287)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                    ....++|+|||++......  .....||+.|+|||++.+ .++.++||||
T Consensus       159 ------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~s  207 (287)
T 2wei_A          159 ------------------------------KDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWS  207 (287)
T ss_dssp             ------------------------------TTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTT-CCCTHHHHHH
T ss_pred             ------------------------------CcccEEEeccCcceeecCCCccccccCcccccChHHhcC-CCCCchhhHh
Confidence                                          0346999999999754322  233457899999999876 4899999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       349 lG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      |||++|+|++|..||.+..      ....+..+..  +..+.                                    ..
T Consensus       208 lG~~l~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~~------------------------------------~~  243 (287)
T 2wei_A          208 AGVILYILLSGTPPFYGKN------EYDILKRVET--GKYAF------------------------------------DL  243 (287)
T ss_dssp             HHHHHHHHHHSSCSSCCSS------HHHHHHHHHH--CCCCC------------------------------------CS
T ss_pred             HHHHHHHHHhCCCCCCCCC------HHHHHHHHHc--CCCCC------------------------------------Cc
Confidence            9999999999999996432      1222222111  00000                                    00


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ......++++.+||.+||..||.+|||+.|+|+||||+..
T Consensus       244 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~~  283 (287)
T 2wei_A          244 PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKY  283 (287)
T ss_dssp             GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHHH
T ss_pred             hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHHHhcc
Confidence            0112346789999999999999999999999999999753

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.9e-43  Score=362.09  Aligned_cols=275  Identities=17%  Similarity=0.184  Sum_probs=208.2

Q ss_pred             cccccCcEee---CCCEEEEEEeccccceEEEEEEeCCC-----CeEEEEEEecccccchHHHHHHHHHHHHhhc-----
Q 045988           31 HAVRMGDTFK---NGRYVVQSKLGWGHFSTVWLAWDTQT-----SHYVALKVQKSAQHYTEAALDEIKILKQIAE-----   97 (530)
Q Consensus        31 ~~~~~g~~~~---~~~y~i~~~LG~G~fg~Vy~a~~~~~-----~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~-----   97 (530)
                      .++..|+.+.   .++|++.++||+|+||+||+|.+..+     ++.||||++....   ....+|+++++++.+     
T Consensus        21 ~~~~~g~~i~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~~~~~~~~~~~~   97 (364)
T 3op5_A           21 EQFAVGEIITDMAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDN---GPLFTELKFYQRAAKPEQIQ   97 (364)
T ss_dssp             CCCCTTCEEECTTCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTC---HHHHHHHHHHHHHCCHHHHH
T ss_pred             hhcCCCcEeeccCCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccc---hhHHHHHHHHHhhhhhHHHH
Confidence            3567777773   46999999999999999999998765     5889999987653   345667777766644     


Q ss_pred             ----CCCCCCcceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcee
Q 045988           98 ----GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIH  173 (530)
Q Consensus        98 ----~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvH  173 (530)
                          .....||||+++++++........+.|||||||+++|.+++... ...+++..+..|+.||+.||+|||++ ||+|
T Consensus        98 e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~-~iiH  175 (364)
T 3op5_A           98 KWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIHEH-EYVH  175 (364)
T ss_dssp             HHHHHTTCSCCCSCCEEEEEEEEETTEEEEEEEEECEEEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHT-TEEC
T ss_pred             HHHHHhhccCCCCCeEEeeeeeccCCcceEEEEEeCCCCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEE
Confidence                12337999999999998765445789999999999999999753 34599999999999999999999997 9999


Q ss_pred             ccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCC
Q 045988          174 TDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTS  253 (530)
Q Consensus       174 rDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (530)
                      |||||+||||+...                                                                  
T Consensus       176 rDlkp~Nill~~~~------------------------------------------------------------------  189 (364)
T 3op5_A          176 GDIKASNLLLNYKN------------------------------------------------------------------  189 (364)
T ss_dssp             CCCCGGGEEEESSC------------------------------------------------------------------
T ss_pred             ecCCHHHEEEecCC------------------------------------------------------------------
Confidence            99999999996310                                                                  


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------cCCC
Q 045988          254 VDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------FTND  323 (530)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------~~~~  323 (530)
                                                                      ...+||+|||++......          ....
T Consensus       190 ------------------------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~  221 (364)
T 3op5_A          190 ------------------------------------------------PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCH  221 (364)
T ss_dssp             ------------------------------------------------TTCEEECCCTTCEESSGGGCCCCSSCCSSCCC
T ss_pred             ------------------------------------------------CCeEEEEECCcceecccCCcccccccCccccc
Confidence                                                            457999999999653221          1344


Q ss_pred             CCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccc
Q 045988          324 IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF  403 (530)
Q Consensus       324 ~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  403 (530)
                      +||+.|+|||++.+..++.++|||||||++|+|++|..||.+...     ...............               
T Consensus       222 ~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~-----~~~~~~~~~~~~~~~---------------  281 (364)
T 3op5_A          222 DGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLK-----DPKYVRDSKIRYREN---------------  281 (364)
T ss_dssp             CCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTT-----CHHHHHHHHHHHHHC---------------
T ss_pred             CCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcccccc-----CHHHHHHHHHHhhhh---------------
Confidence            599999999999999999999999999999999999999964321     112111111111000               


Q ss_pred             cccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          404 NRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                      ..... .........+.++.+||..||..||.+||++.++++
T Consensus       282 ----------------~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~  322 (364)
T 3op5_A          282 ----------------IASLM-DKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRD  322 (364)
T ss_dssp             ----------------HHHHH-HHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             ----------------HHHHH-HHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence                            00011 111112345688999999999999999999999886

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=5.6e-44  Score=359.58  Aligned_cols=261  Identities=20%  Similarity=0.317  Sum_probs=187.6

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCe---EEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSH---YVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~---~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ..++|++.+.||+|+||+||+|++..++.   .||||+++..   ....+.+.+|+.+++++      .||||+++++++
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~   94 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEF------DHPHVAKLVGVS   94 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTC------CCTTBCCCCEEE
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHC------CCCceehhhcee
Confidence            36789999999999999999999887765   8999998764   23456788999999998      788999999999


Q ss_pred             eecCCCC--cEEEEEEecc-CcCHHHHHHhhccC----CCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          114 KHSGPNG--QHVCMVFEYL-GENLLTLIKYADYR----GVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       114 ~~~~~~~--~~~~lVmE~~-~~~L~~~i~~~~~~----~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      ......+  ...++||||+ +++|.+++......    .+++..+..++.||+.||+|||++ ||+||||||+|||++. 
T Consensus        95 ~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~-~ivH~Dikp~NIli~~-  172 (323)
T 3qup_A           95 LRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR-NFIHRDLAARNCMLAE-  172 (323)
T ss_dssp             ECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECT-
T ss_pred             eccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC-CcccCCCCcceEEEcC-
Confidence            8542111  1349999999 88999998654322    489999999999999999999997 9999999999999954 


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (323)
T 3qup_A          173 --------------------------------------------------------------------------------  172 (323)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCC
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                         ++.+||+|||++......     .....+|+.|+|||++.+..++
T Consensus       173 -----------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  217 (323)
T 3qup_A          173 -----------------------------------DMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYT  217 (323)
T ss_dssp             -----------------------------------TSCEEECCCCC-----------------CCGGGCCHHHHHHCCCC
T ss_pred             -----------------------------------CCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCC
Confidence                                               457999999999754322     2234567889999999998999


Q ss_pred             CcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 TPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 ~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      .++|||||||++|+|++ |.+||.+..      .......+...                                    
T Consensus       218 ~~~Di~slG~il~ell~~g~~p~~~~~------~~~~~~~~~~~------------------------------------  255 (323)
T 3qup_A          218 VHSDVWAFGVTMWEIMTRGQTPYAGIE------NAEIYNYLIGG------------------------------------  255 (323)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTCC------GGGHHHHHHTT------------------------------------
T ss_pred             CccchhhHHHHHHHHHhCCCCCccccC------hHHHHHHHhcC------------------------------------
Confidence            99999999999999999 999996543      11222111100                                    


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcC-------HHHHhcCCCCCCCCC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPT-------AAQCLTHPWINVGPR  470 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpt-------a~elL~hp~f~~~~~  470 (530)
                           .....+...++.+.+||.+||..||.+|||       +++++.|||+.....
T Consensus       256 -----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~~~  307 (323)
T 3qup_A          256 -----NRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLSTSQ  307 (323)
T ss_dssp             -----CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC--------
T ss_pred             -----CCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCCCC
Confidence                 011233456688999999999999999999       788889999986543

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=4e-44  Score=360.97  Aligned_cols=269  Identities=21%  Similarity=0.236  Sum_probs=200.2

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +..++|++.++||+|+||+||+|++.  ++.||||++...........+|+.+|+++      .||||+++++++.....
T Consensus        21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~~~~   92 (322)
T 3soc_A           21 FQSMPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQDKQSWQNEYEVYSLPGM------KHENILQFIGAEKRGTS   92 (322)
T ss_dssp             ETTEEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGGGHHHHHHHHHHHTSTTC------CCTTBCCEEEEEEEECS
T ss_pred             cchhhchhhheecccCceEEEEEEEC--CCEEEEEEeecCchHHHHHHHHHHHHhcC------CCCCchhhcceeccCCC
Confidence            34679999999999999999999765  89999999987665555666788888777      78999999999997654


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC----------CceeccCCCCcEEEeecc
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHREL----------SIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~----------gIvHrDIKp~NILl~~~~  187 (530)
                      ....+|+||||| +++|.+++..   ..+++..+..++.||+.||+|||+ .          ||+||||||+|||++.  
T Consensus        93 ~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~qi~~al~~LH~-~~~~l~~~~~~~ivH~Dlkp~Nill~~--  166 (322)
T 3soc_A           93 VDVDLWLITAFHEKGSLSDFLKA---NVVSWNELCHIAETMARGLAYLHE-DIPGLKDGHKPAISHRDIKSKNVLLKN--  166 (322)
T ss_dssp             SSEEEEEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHTC-CEEEETTEEECEEECSCCSGGGEEECT--
T ss_pred             CCceEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHh-hccccccccCCCEEeCCCChHhEEECC--
Confidence            456799999999 8899999964   349999999999999999999998 5          9999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (322)
T 3soc_A          167 --------------------------------------------------------------------------------  166 (322)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCC----
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGS----  338 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~----  338 (530)
                                                        ++.+||+|||++......     ....+||+.|+|||++.+.    
T Consensus       167 ----------------------------------~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  212 (322)
T 3soc_A          167 ----------------------------------NLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQ  212 (322)
T ss_dssp             ----------------------------------TCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCC
T ss_pred             ----------------------------------CCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccC
Confidence                                              467999999999654322     3346799999999999873    


Q ss_pred             -CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCch-hhhcCCCcccccccccCccccchhcc
Q 045988          339 -KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPR-KIAFGGRYSRDFFNRHGDLRHIRRLR  416 (530)
Q Consensus       339 -~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (530)
                       .++.++|||||||++|+|++|+.||.+........-..       ..+..|. .....               ......
T Consensus       213 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------------~~~~~~  270 (322)
T 3soc_A          213 RDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEE-------EIGQHPSLEDMQE---------------VVVHKK  270 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHH-------HHCSSCCHHHHHH---------------HHTTSC
T ss_pred             cCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhh-------hhccCCchhhhhh---------------hhhccc
Confidence             45678899999999999999999997654322111000       0010000 00000               000000


Q ss_pred             cCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                         ...... ........+..+.+||.+||+.||.+|||+.|+++
T Consensus       271 ---~~~~~~-~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~  311 (322)
T 3soc_A          271 ---KRPVLR-DYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGE  311 (322)
T ss_dssp             ---CCCCCC-GGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---CCCCcc-ccccccchHHHHHHHHHHHccCChhhCcCHHHHHH
Confidence               000000 00011234567999999999999999999999986

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=1.4e-43  Score=350.39  Aligned_cols=255  Identities=20%  Similarity=0.302  Sum_probs=203.0

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--------chHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--------YTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      .+..++|++.+.||+|+||+||+|++..+++.||||++.....        ....+.+|+.+++++      .||||+++
T Consensus        15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~   88 (287)
T 4f0f_A           15 TLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL------NHPNIVKL   88 (287)
T ss_dssp             BCCSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTC------CCTTBCCE
T ss_pred             hhhhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhC------CCCCchhh
Confidence            4557899999999999999999999999999999998865322        125778899999998      78899999


Q ss_pred             cceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--ceeccCCCCcEEEeec
Q 045988          110 LDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELS--IIHTDLKPENVLLMSM  186 (530)
Q Consensus       110 ~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~g--IvHrDIKp~NILl~~~  186 (530)
                      ++++...    .  ++||||+ +++|.+++... ...+++..+..++.||+.||+|||++ |  |+||||||+|||++..
T Consensus        89 ~~~~~~~----~--~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~-~~~ivH~dikp~Nil~~~~  160 (287)
T 4f0f_A           89 YGLMHNP----P--RMVMEFVPCGDLYHRLLDK-AHPIKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSL  160 (287)
T ss_dssp             EEEETTT----T--EEEEECCTTCBHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCSCCSGGGEEESCC
T ss_pred             heeecCC----C--eEEEEecCCCCHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHhC-CCCeecCCCCcceEEEecc
Confidence            9998742    2  7999999 79999888643 34599999999999999999999997 9  9999999999999542


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                      ...                                                                             
T Consensus       161 ~~~-----------------------------------------------------------------------------  163 (287)
T 4f0f_A          161 DEN-----------------------------------------------------------------------------  163 (287)
T ss_dssp             CTT-----------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhc--CCCCCCcc
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLL--GSKYSTPA  344 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~--~~~~~~~~  344 (530)
                                                        ....++|+|||++...........||+.|+|||++.  ...++.++
T Consensus       164 ----------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~  209 (287)
T 4f0f_A          164 ----------------------------------APVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKA  209 (287)
T ss_dssp             ----------------------------------CSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHH
T ss_pred             ----------------------------------CceeEEeCCCCccccccccccccCCCccccCchhhccCCCCcCchh
Confidence                                              023589999999987666667788999999999994  44578999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      |||||||++|+|++|..||.....     ............+.                                     
T Consensus       210 Di~slG~~l~~l~~g~~pf~~~~~-----~~~~~~~~~~~~~~-------------------------------------  247 (287)
T 4f0f_A          210 DTYSFAMILYTILTGEGPFDEYSY-----GKIKFINMIREEGL-------------------------------------  247 (287)
T ss_dssp             HHHHHHHHHHHHHHSSCTTTTCCC-----CHHHHHHHHHHSCC-------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCCCCccccc-----cHHHHHHHHhccCC-------------------------------------
Confidence            999999999999999999964431     11111111111110                                     


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                        ...++...++.+.+||.+||..||.+|||+.|+++
T Consensus       248 --~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  282 (287)
T 4f0f_A          248 --RPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVK  282 (287)
T ss_dssp             --CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --CCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence              11234456788999999999999999999999986

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=8.3e-44  Score=363.58  Aligned_cols=252  Identities=24%  Similarity=0.348  Sum_probs=202.8

Q ss_pred             eCCCEEEEEEeccccceEEEEEE-----eCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAW-----DTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~-----~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..++|++.++||+|+||.||+|+     +..+++.||||+++...  .....+.+|+++++++.     +||||++++++
T Consensus        20 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hpniv~~~~~   94 (359)
T 3vhe_A           20 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVVNLLGA   94 (359)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEEE
T ss_pred             cccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhc-----CCcceeeeeee
Confidence            46899999999999999999998     56678999999987643  23456889999999995     68999999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhcc------------------------------------------------
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADY------------------------------------------------  143 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~------------------------------------------------  143 (530)
                      +...   +..+++||||| +++|.+++.....                                                
T Consensus        95 ~~~~---~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3vhe_A           95 CTKP---GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK  171 (359)
T ss_dssp             ECST---TSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred             eecC---CCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence            8853   35689999999 8899999975432                                                


Q ss_pred             ----------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccc
Q 045988          144 ----------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKD  207 (530)
Q Consensus       144 ----------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~  207 (530)
                                      ..+++..+..|+.||+.||+|||++ ||+||||||+|||++.                      
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~-~ivH~Dikp~NIll~~----------------------  228 (359)
T 3vhe_A          172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAARNILLSE----------------------  228 (359)
T ss_dssp             ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECG----------------------
T ss_pred             ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhEEEcC----------------------
Confidence                            1188999999999999999999997 9999999999999955                      


Q ss_pred             cccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCC
Q 045988          208 KLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCK  287 (530)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (530)
                                                                                                      
T Consensus       229 --------------------------------------------------------------------------------  228 (359)
T 3vhe_A          229 --------------------------------------------------------------------------------  228 (359)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCC
Q 045988          288 RPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-GDV  361 (530)
Q Consensus       288 ~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~  361 (530)
                                    ++.++|+|||++.....     ......||+.|+|||++.+..|+.++|||||||++|+|++ |.+
T Consensus       229 --------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~  294 (359)
T 3vhe_A          229 --------------KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS  294 (359)
T ss_dssp             --------------GGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCC
T ss_pred             --------------CCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCC
Confidence                          46799999999975322     2344567899999999999899999999999999999998 999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHH
Q 045988          362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADF  441 (530)
Q Consensus       362 PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL  441 (530)
                      ||.+...      ...+.......                                        .....+...++++.+|
T Consensus       295 p~~~~~~------~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~l~~l  328 (359)
T 3vhe_A          295 PYPGVKI------DEEFCRRLKEG----------------------------------------TRMRAPDYTTPEMYQT  328 (359)
T ss_dssp             SSTTCCC------SHHHHHHHHHT----------------------------------------CCCCCCTTCCHHHHHH
T ss_pred             CCCccch------hHHHHHHHHcC----------------------------------------CCCCCCCCCCHHHHHH
Confidence            9965431      11121111110                                        0112234456889999


Q ss_pred             HhhccCcCCCCCcCHHHHhcC
Q 045988          442 LVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       442 l~~mL~~dP~~Rpta~elL~h  462 (530)
                      |.+||..||.+|||+.|+++|
T Consensus       329 i~~~l~~dP~~Rps~~ell~~  349 (359)
T 3vhe_A          329 MLDCWHGEPSQRPTFSELVEH  349 (359)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHccCChhhCCCHHHHHHH
Confidence            999999999999999999986

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.3e-44  Score=361.23  Aligned_cols=253  Identities=20%  Similarity=0.288  Sum_probs=201.3

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCC---eEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTS---HYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~---~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      .+...+..++|++.+.||+|+||+||+|.+..++   ..||||+++..  ......+.+|+.+|+++      .||||++
T Consensus        41 ~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~  114 (325)
T 3kul_A           41 SFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQF------DHPNIIR  114 (325)
T ss_dssp             --CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTC------CCTTBCC
T ss_pred             hhccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhC------CCCCCCc
Confidence            4445566789999999999999999999988654   46999998764  23346688999999998      7889999


Q ss_pred             ecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      +++++.    .+...||||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.  
T Consensus       115 ~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~~--  186 (325)
T 3kul_A          115 LEGVVT----RGRLAMIVTEYMENGSLDTFLRTH-DGQFTIMQLVGMLRGVGAGMRYLSDL-GYVHRDLAARNVLVDS--  186 (325)
T ss_dssp             EEEEEC----GGGCCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT--
T ss_pred             EEEEEE----eCCccEEEeeCCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCcceEEECC--
Confidence            999998    457899999999 88999998643 24599999999999999999999997 9999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (325)
T 3kul_A          187 --------------------------------------------------------------------------------  186 (325)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCC
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                        ++.++|+|||++......      .....+|+.|+|||++.+..++
T Consensus       187 ----------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  232 (325)
T 3kul_A          187 ----------------------------------NLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFS  232 (325)
T ss_dssp             ----------------------------------TCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEEC
T ss_pred             ----------------------------------CCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCC
Confidence                                              467999999999764322      2233467789999999988899


Q ss_pred             CcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 TPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 ~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      .++|||||||++|+|++ |..||....      .......+...                                    
T Consensus       233 ~~~Di~slG~il~ell~~g~~p~~~~~------~~~~~~~~~~~------------------------------------  270 (325)
T 3kul_A          233 SASDVWSFGVVMWEVLAYGERPYWNMT------NRDVISSVEEG------------------------------------  270 (325)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTSC------HHHHHHHHHTT------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHHcC------------------------------------
Confidence            99999999999999999 999996432      11111111100                                    


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                           .....+...++.+.+||.+||..||.+|||+.++++
T Consensus       271 -----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~  306 (325)
T 3kul_A          271 -----YRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVS  306 (325)
T ss_dssp             -----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----CCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                 011233456788999999999999999999999987

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.3e-43  Score=364.22  Aligned_cols=252  Identities=24%  Similarity=0.377  Sum_probs=202.8

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeC-------CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDT-------QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~-------~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      .+..++|++.+.||+|+||+||+|++.       .++..||||+++...  .....+.+|+.+|+++.     .||||++
T Consensus        77 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hpnIv~  151 (370)
T 2psq_A           77 EFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----KHKNIIN  151 (370)
T ss_dssp             BCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSC-----CCTTBCC
T ss_pred             cccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhc-----CCCCEee
Confidence            344689999999999999999999864       356789999987643  23456889999999984     5888999


Q ss_pred             ecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcee
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIH  173 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvH  173 (530)
                      +++++.    ....+|+||||+ +++|.+++.....              ..+++..+..++.||+.||+|||++ ||+|
T Consensus       152 ~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH  226 (370)
T 2psq_A          152 LLGACT----QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ-KCIH  226 (370)
T ss_dssp             EEEEEC----SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT-TEEC
T ss_pred             EEEEEc----cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC-Ceec
Confidence            999998    446799999999 8899999976432              3478999999999999999999997 9999


Q ss_pred             ccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCC
Q 045988          174 TDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTS  253 (530)
Q Consensus       174 rDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (530)
                      |||||+||||+.                                                                    
T Consensus       227 rDlkp~NIll~~--------------------------------------------------------------------  238 (370)
T 2psq_A          227 RDLAARNVLVTE--------------------------------------------------------------------  238 (370)
T ss_dssp             SCCCGGGEEECT--------------------------------------------------------------------
T ss_pred             cccchhhEEECC--------------------------------------------------------------------
Confidence            999999999954                                                                    


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCC
Q 045988          254 VDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQ  328 (530)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~  328 (530)
                                                                      ++.+||+|||++.....     ......+|+.
T Consensus       239 ------------------------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~  270 (370)
T 2psq_A          239 ------------------------------------------------NNVMKIADFGLARDINNIDYYKKTTNGRLPVK  270 (370)
T ss_dssp             ------------------------------------------------TCCEEECCCSSCEETTCCCTTCTTTTTTSCGG
T ss_pred             ------------------------------------------------CCCEEEccccCCcccCcccceecccCCCcccc
Confidence                                                            46799999999975432     1233457889


Q ss_pred             ccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccC
Q 045988          329 YRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG  407 (530)
Q Consensus       329 y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  407 (530)
                      |+|||++.+..|+.++|||||||++|+|++ |..||.+..      .......+..  +                     
T Consensus       271 y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~------~~~~~~~~~~--~---------------------  321 (370)
T 2psq_A          271 WMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP------VEELFKLLKE--G---------------------  321 (370)
T ss_dssp             GCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------GGGHHHHHHT--T---------------------
T ss_pred             eECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHhc--C---------------------
Confidence            999999999999999999999999999999 999996533      1111111100  0                     


Q ss_pred             ccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                        .....+...+.++.+||.+||+.||.+|||+.|++++
T Consensus       322 ------------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~  358 (370)
T 2psq_A          322 ------------------HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  358 (370)
T ss_dssp             ------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                              0112334567889999999999999999999999874

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=1.5e-43  Score=346.79  Aligned_cols=248  Identities=23%  Similarity=0.389  Sum_probs=203.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +..++|++.+.||+|+||.||+|.+. ++..||+|+++........+.+|+.+++++      .||||+++++++.    
T Consensus         5 l~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~----   73 (268)
T 3sxs_A            5 LKREEITLLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGSMSEDEFFQEAQTMMKL------SHPKLVKFYGVCS----   73 (268)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECBTTBCHHHHHHHHHHHHHC------CCTTBCCEEEEEC----
T ss_pred             echhheeeeeeeccCCCceEEEEEec-CceeEEEEEeccCCCcHHHHHHHHHHHHhC------CCCCEeeEEEEEc----
Confidence            45689999999999999999999765 577899999988776677889999999999      6888999999997    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .....++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        74 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~Nil~~~------------  139 (268)
T 3sxs_A           74 KEYPIYIVTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLESH-QFIHRDLAARNCLVDR------------  139 (268)
T ss_dssp             SSSSEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEEESSCSGGGEEECT------------
T ss_pred             cCCceEEEEEccCCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCcCcceEEECC------------
Confidence            457899999999 889999987543 3499999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (268)
T 3sxs_A          140 --------------------------------------------------------------------------------  139 (268)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                              ++.++|+|||++......    .....+|+.|+|||++.+..++.++|||||||++
T Consensus       140 ------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  195 (268)
T 3sxs_A          140 ------------------------DLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILM  195 (268)
T ss_dssp             ------------------------TCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHH
T ss_pred             ------------------------CCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHH
Confidence                                    467999999999754322    2334567789999999988899999999999999


Q ss_pred             HHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |+|++ |..||....      .......+..  +                                       .....+.
T Consensus       196 ~~l~~~g~~p~~~~~------~~~~~~~~~~--~---------------------------------------~~~~~~~  228 (268)
T 3sxs_A          196 WEVFSLGKMPYDLYT------NSEVVLKVSQ--G---------------------------------------HRLYRPH  228 (268)
T ss_dssp             HHHHTTTCCTTTTSC------HHHHHHHHHT--T---------------------------------------CCCCCCT
T ss_pred             HHHHcCCCCCccccC------hHHHHHHHHc--C---------------------------------------CCCCCCC
Confidence            99999 999996432      1111111110  0                                       0011223


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..++.+.+||.+||+.||.+|||+.|+++|
T Consensus       229 ~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (268)
T 3sxs_A          229 LASDTIYQIMYSCWHELPEKRPTFQQLLSS  258 (268)
T ss_dssp             TSCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             cChHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            346789999999999999999999999986

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.9e-44  Score=371.54  Aligned_cols=282  Identities=23%  Similarity=0.353  Sum_probs=213.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +++|++.++||+|+||+||+|++..+++.||||++....  ...+.+.+|+++|+++      .||||+++++++...  
T Consensus         8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~~~~--   79 (396)
T 4eut_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL------NHKNIVKLFAIEEET--   79 (396)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHC------CCTTBCCEEEEEECT--
T ss_pred             CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhc------CCCCCCeEEEeeccC--
Confidence            689999999999999999999999999999999987643  3346678999999999      788999999998854  


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYR-GVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~-~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      .....||||||| +++|.+++...... .+++..++.++.||+.||+|||++ ||+||||||+|||+....+        
T Consensus        80 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~~~--------  150 (396)
T 4eut_A           80 TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN-GIVHRNIKPGNIMRVIGED--------  150 (396)
T ss_dssp             TTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEEECTT--------
T ss_pred             CCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC-CEEECCcCHHHEEEeecCC--------
Confidence            345889999999 88999998754332 399999999999999999999997 9999999999999843110        


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (396)
T 4eut_A          151 --------------------------------------------------------------------------------  150 (396)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcC--------CCCCCcchh
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLG--------SKYSTPADL  346 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~--------~~~~~~~Di  346 (530)
                                              ....+||+|||++....  .......||+.|+|||++.+        ..|+.++||
T Consensus       151 ------------------------~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~Di  206 (396)
T 4eut_A          151 ------------------------GQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDL  206 (396)
T ss_dssp             ------------------------SCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHH
T ss_pred             ------------------------CceeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHH
Confidence                                    04569999999997643  23456689999999999875        457889999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|..||.+....     ......+..+++..|...+.......     .+.+.         +......
T Consensus       207 wSlG~il~el~tg~~Pf~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~~~~-----~~~~~---------~~~~~~~  267 (396)
T 4eut_A          207 WSIGVTFYHAATGSLPFRPFEGP-----RRNKEVMYKIITGKPSGAISGVQKAE-----NGPID---------WSGDMPV  267 (396)
T ss_dssp             HHHHHHHHHHHHSSCSEECTTCT-----TTCHHHHHHHHHSCCTTCCEEEECST-----TCCEE---------EESSCCT
T ss_pred             HHHHHHHHHHHHCCCCCCCCCcc-----cchHHHHHHHhcCCCcccchhheecc-----CCCcc---------cCccCCc
Confidence            99999999999999999754321     22233344444444433221110000     00000         0011111


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ...++...+..+.+||.+||.+||.+||+++|++++
T Consensus       268 ~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~  303 (396)
T 4eut_A          268 SCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE  303 (396)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHH
T ss_pred             ccccchHHHhhchHHHHHhhccChhhhccHHHHHHH
Confidence            224556778899999999999999999999998653

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=3.2e-44  Score=368.33  Aligned_cols=259  Identities=18%  Similarity=0.272  Sum_probs=204.7

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEE-----eCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAW-----DTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~-----~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .+..++|++.++||+|+||+||+|+     +..+++.||||+++..  ......+.+|+.+++++      .||||++++
T Consensus        67 ~~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~  140 (367)
T 3l9p_A           67 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKF------NHQNIVRCI  140 (367)
T ss_dssp             BCCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHC------CCTTBCCEE
T ss_pred             hcCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhC------CCCCCCeEE
Confidence            3446899999999999999999999     4567889999998653  23345678899999999      788999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY-----RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~-----~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                      +++.    .....||||||| +++|.+++.....     ..+++..+..++.||+.||+|||++ ||+||||||+||||+
T Consensus       141 ~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~  215 (367)
T 3l9p_A          141 GVSL----QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT  215 (367)
T ss_dssp             EEEC----SSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEES
T ss_pred             EEEe----cCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChhhEEEe
Confidence            9998    446789999999 8899999976542     3489999999999999999999997 999999999999995


Q ss_pred             eccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 045988          185 SMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVE  264 (530)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (530)
                      ....                                                                            
T Consensus       216 ~~~~----------------------------------------------------------------------------  219 (367)
T 3l9p_A          216 CPGP----------------------------------------------------------------------------  219 (367)
T ss_dssp             CSST----------------------------------------------------------------------------
T ss_pred             cCCC----------------------------------------------------------------------------
Confidence            4110                                                                            


Q ss_pred             cccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-----cccCCCCCCCCccCChhhcCCC
Q 045988          265 DQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-----KQFTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-----~~~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                           ...+||+|||+++...     .......||+.|+|||++.+..
T Consensus       220 -------------------------------------~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  262 (367)
T 3l9p_A          220 -------------------------------------GRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGI  262 (367)
T ss_dssp             -------------------------------------TCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCC
T ss_pred             -------------------------------------CceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCC
Confidence                                                 3459999999996432     1223346789999999999889


Q ss_pred             CCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccC
Q 045988          340 YSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       340 ~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (530)
                      |+.++|||||||++|+|++ |.+||....      ....+..+...                                  
T Consensus       263 ~~~~~DvwslG~il~ellt~g~~pf~~~~------~~~~~~~i~~~----------------------------------  302 (367)
T 3l9p_A          263 FTSKTDTWSFGVLLWEIFSLGYMPYPSKS------NQEVLEFVTSG----------------------------------  302 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHTT----------------------------------
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcC----------------------------------
Confidence            9999999999999999998 999996432      11111111100                                  


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                             .....+...+..+.+||.+||+.||.+|||+.++++|.|+-.
T Consensus       303 -------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~  344 (367)
T 3l9p_A          303 -------GRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  344 (367)
T ss_dssp             -------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -------CCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence                   001223445678999999999999999999999999987753

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.2e-43  Score=353.15  Aligned_cols=262  Identities=20%  Similarity=0.297  Sum_probs=199.1

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +++.+ .++|++.++||+|+||+||+|.+  +++.||||++....  ...+.+|.+++..+.    ..||||+++++++.
T Consensus         2 ~~~~~-~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~--~~~~~~e~~~~~~~~----l~h~niv~~~~~~~   72 (301)
T 3q4u_A            2 MQRTV-ARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSRD--EKSWFRETELYNTVM----LRHENILGFIASDM   72 (301)
T ss_dssp             --CCC-GGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGGG--HHHHHHHHHHHHHTC----CCCTTBCCEEEEEE
T ss_pred             ccccc-cCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEecccc--chhhHHHHHHHHHhh----ccCcCeeeEEEeec
Confidence            34455 68999999999999999999976  68999999987643  455667888877742    17999999999987


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH--------hhCCceeccCCCCcEEEee
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH--------RELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH--------~~~gIvHrDIKp~NILl~~  185 (530)
                      ........+|+||||+ +++|.+++.   ...+++..+..++.||+.||+|||        ++ ||+||||||+|||++.
T Consensus        73 ~~~~~~~~~~lv~e~~~~g~L~~~l~---~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~-~ivH~Dlkp~Nill~~  148 (301)
T 3q4u_A           73 TSRHSSTQLWLITHYHEMGSLYDYLQ---LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP-AIAHRDLKSKNILVKK  148 (301)
T ss_dssp             EEETTEEEEEEEECCCTTCBHHHHHT---TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC-EEECSCCCGGGEEECT
T ss_pred             cccCCCceeEEehhhccCCCHHHHHh---hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CeecCCCChHhEEEcC
Confidence            6554567899999999 889999995   345999999999999999999999        86 9999999999999954


Q ss_pred             ccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q 045988          186 MIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVED  265 (530)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (530)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (301)
T 3q4u_A          149 --------------------------------------------------------------------------------  148 (301)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcCC
Q 045988          266 QQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~~  338 (530)
                                                          ++.+||+|||++......       ....+||+.|+|||++.+.
T Consensus       149 ------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  192 (301)
T 3q4u_A          149 ------------------------------------NGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDET  192 (301)
T ss_dssp             ------------------------------------TSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTC
T ss_pred             ------------------------------------CCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCc
Confidence                                                457999999999653322       2345899999999999876


Q ss_pred             ------CCCCcchhHHHHHHHHHHHhC----------CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccc
Q 045988          339 ------KYSTPADLWSFACICFELATG----------DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDF  402 (530)
Q Consensus       339 ------~~~~~~DiWSlG~il~elltG----------~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  402 (530)
                            .++.++|||||||++|+|++|          ..||........  ....+..+....+..+.            
T Consensus       193 ~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~------------  258 (301)
T 3q4u_A          193 IQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDP--SFEDMRKVVCVDQQRPN------------  258 (301)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSC--CHHHHHHHHTTSCCCCC------------
T ss_pred             CCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCc--chhhhhHHHhccCCCCC------------
Confidence                  345789999999999999999          777754332111  11222211111110000            


Q ss_pred             ccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          403 FNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                       .     ....++...++.+.+||.+||+.||.+|||+.|+++
T Consensus       259 -----------------~-----~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  295 (301)
T 3q4u_A          259 -----------------I-----PNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK  295 (301)
T ss_dssp             -----------------C-----CGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             -----------------C-----ChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHH
Confidence                             0     000122345688999999999999999999999986

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=2.2e-43  Score=350.23  Aligned_cols=258  Identities=23%  Similarity=0.355  Sum_probs=201.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ++|.....||+|+||.||+|.+..+++.||||++.... .....+.+|+.+++.+      .||||+++++++..    .
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~----~   91 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHL------KHKNIVQYLGSFSE----N   91 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTC------CCTTBCCEEEEEEE----T
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhC------CCCCEeeEeeEEEe----C
Confidence            34444558999999999999999999999999887643 3356788999999998      78899999999984    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADY-RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~-~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ...++||||+ +++|.+++..... ..+++..+..++.||+.||.|||++ ||+||||||+|||++..            
T Consensus        92 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~~~------------  158 (295)
T 2clq_A           92 GFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN-QIVHRDIKGDNVLINTY------------  158 (295)
T ss_dssp             TEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEETT------------
T ss_pred             CcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC-CEEccCCChhhEEEECC------------
Confidence            6899999999 8899999875432 2467899999999999999999997 99999999999999541            


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (295)
T 2clq_A          159 --------------------------------------------------------------------------------  158 (295)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCC--CCCcchhHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSK--YSTPADLWSFACIC  353 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~--~~~~~DiWSlG~il  353 (530)
                                             ++.++|+|||++.....   ......||+.|+|||++.+..  ++.++|||||||++
T Consensus       159 -----------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il  215 (295)
T 2clq_A          159 -----------------------SGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTI  215 (295)
T ss_dssp             -----------------------TCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHH
T ss_pred             -----------------------CCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHH
Confidence                                   35699999999975432   234567899999999997644  88999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|..||....      .............                                       ....++..
T Consensus       216 ~~l~~g~~pf~~~~------~~~~~~~~~~~~~---------------------------------------~~~~~~~~  250 (295)
T 2clq_A          216 IEMATGKPPFYELG------EPQAAMFKVGMFK---------------------------------------VHPEIPES  250 (295)
T ss_dssp             HHHHHTSCTTGGGS------SHHHHHHHHHHHC---------------------------------------CCCCCCTT
T ss_pred             HHHHHCCCCccCCC------chhHHHHhhcccc---------------------------------------cccccccc
Confidence            99999999995321      1111100000000                                       01123445


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .+..+.+||.+||+.||.+|||+.++|+||||+....
T Consensus       251 ~~~~~~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~  287 (295)
T 2clq_A          251 MSAEAKAFILKCFEPDPDKRACANDLLVDEFLKVSSK  287 (295)
T ss_dssp             SCHHHHHHHHHTTCSSTTTSCCHHHHHTSGGGCC---
T ss_pred             CCHHHHHHHHHHccCChhhCCCHHHHhcChhhhhccc
Confidence            6788999999999999999999999999999986543

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=2.1e-43  Score=348.52  Aligned_cols=248  Identities=19%  Similarity=0.325  Sum_probs=200.9

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +..++|++++.||+|+||+||+|.+. ++..||||+++........+.+|+++++++      .||||+++++++.    
T Consensus        21 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~----   89 (283)
T 3gen_A           21 IDPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMNL------SHEKLVQLYGVCT----   89 (283)
T ss_dssp             CCGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHHTC------CCTTBCCEEEEEC----
T ss_pred             CCHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCCCHHHHHHHHHHHhcC------CCCCEeeEEEEEe----
Confidence            34679999999999999999999875 678899999988776678889999999999      6888999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .....|+||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~Nili~~------------  155 (283)
T 3gen_A           90 KQRPIFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESK-QFLHRDLAARNCLVND------------  155 (283)
T ss_dssp             SSSSEEEEECCCTTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCSGGGEEECT------------
T ss_pred             cCCCeEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCCccceEEEcC------------
Confidence            457899999999 899999997533 3499999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (283)
T 3gen_A          156 --------------------------------------------------------------------------------  155 (283)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                              ++.++|+|||++.....    ......+|+.|+|||++.+..++.++|||||||++
T Consensus       156 ------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l  211 (283)
T 3gen_A          156 ------------------------QGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLM  211 (283)
T ss_dssp             ------------------------TSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHH
Confidence                                    45799999999975432    23344567889999999988899999999999999


Q ss_pred             HHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |+|++ |..||....      .......+....                                         ....+.
T Consensus       212 ~~l~t~g~~p~~~~~------~~~~~~~~~~~~-----------------------------------------~~~~~~  244 (283)
T 3gen_A          212 WEIYSLGKMPYERFT------NSETAEHIAQGL-----------------------------------------RLYRPH  244 (283)
T ss_dssp             HHHHTTTCCTTTTSC------HHHHHHHHHTTC-----------------------------------------CCCCCT
T ss_pred             HHHHhCCCCCccccC------hhHHHHHHhccc-----------------------------------------CCCCCC
Confidence            99998 999996433      111111111100                                         011223


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..++.+.+||.+||+.||.+|||+.++|+|
T Consensus       245 ~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  274 (283)
T 3gen_A          245 LASEKVYTIMYSCWHEKADERPTFKILLSN  274 (283)
T ss_dssp             TCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence            446789999999999999999999999986

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.9e-43  Score=349.56  Aligned_cols=249  Identities=21%  Similarity=0.316  Sum_probs=208.2

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +..++|++.++||+|+||+||+|.+..++..||+|++.......+.+.+|+.+++++      .||||+++++++.    
T Consensus        10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~----   79 (288)
T 3kfa_A           10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLVQLLGVCT----   79 (288)
T ss_dssp             CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHC------CCTTBCCEEEEEC----
T ss_pred             ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEc----
Confidence            346899999999999999999999999999999999988776678899999999999      6888999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .....|+||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus        80 ~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dikp~Nil~~~------------  146 (288)
T 3kfa_A           80 REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLVGE------------  146 (288)
T ss_dssp             SSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH-TCCCSCCSGGGEEECG------------
T ss_pred             cCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC-CccCCCCCcceEEEcC------------
Confidence            456799999999 79999999876666699999999999999999999998 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (288)
T 3kfa_A          147 --------------------------------------------------------------------------------  146 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                              ++.++|+|||++......    .....+|+.|+|||++.+..++.++|||||||++
T Consensus       147 ------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  202 (288)
T 3kfa_A          147 ------------------------NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLL  202 (288)
T ss_dssp             ------------------------GGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHH
Confidence                                    457999999999754322    2334567889999999988999999999999999


Q ss_pred             HHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |+|++ |.+||....      .......+...                                         .....+.
T Consensus       203 ~~ll~~g~~p~~~~~------~~~~~~~~~~~-----------------------------------------~~~~~~~  235 (288)
T 3kfa_A          203 WEIATYGMSPYPGID------LSQVYELLEKD-----------------------------------------YRMERPE  235 (288)
T ss_dssp             HHHHTTSCCSSTTCC------GGGHHHHHHTT-----------------------------------------CCCCCCT
T ss_pred             HHHHhCCCCCCCCCC------HHHHHHHHhcc-----------------------------------------CCCCCCC
Confidence            99999 999996543      11111111100                                         0112234


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ..++.+.+||.+||..||.+|||+.++++
T Consensus       236 ~~~~~l~~li~~~l~~dp~~Rps~~~~~~  264 (288)
T 3kfa_A          236 GCPEKVYELMRACWQWNPSDRPSFAEIHQ  264 (288)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCChhhCcCHHHHHH
Confidence            55788999999999999999999999986

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=4.8e-43  Score=347.75  Aligned_cols=256  Identities=21%  Similarity=0.250  Sum_probs=195.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.+.||+|+||+||+|++..+++.||||++..... ...+.+|+.+++.+.      |++++..+..+..   .+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~------~~~~i~~~~~~~~---~~   77 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQ------GGVGIPTIRWCGA---EG   77 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC----CCCHHHHHHHHHHHT------TSTTCCCEEEEEE---ET
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc-chHHHHHHHHHHHhc------CCCCCCeeeeecC---CC
Confidence            5789999999999999999999999999999998765443 346788999999995      4445555554433   44


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ...++||||++++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||+....             
T Consensus        78 ~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIl~~~~~-------------  142 (296)
T 4hgt_A           78 DYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLMGLGK-------------  142 (296)
T ss_dssp             TEEEEEEECCCCBHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECCGG-------------
T ss_pred             CceEEEEEccCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeeeeccC-------------
Confidence            7899999999999999987433 4599999999999999999999997 999999999999993210             


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (296)
T 4hgt_A          143 --------------------------------------------------------------------------------  142 (296)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------cCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                          ....+||+|||++......          .....||+.|+|||++.+..++.++||||||
T Consensus       143 --------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG  202 (296)
T 4hgt_A          143 --------------------KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLG  202 (296)
T ss_dssp             --------------------GTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHH
T ss_pred             --------------------CCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHH
Confidence                                0457999999999754322          2355789999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|..||.+......   ...+..+....-..|.                                     ...
T Consensus       203 ~il~~l~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~-------------------------------------~~~  242 (296)
T 4hgt_A          203 YVLMYFNLGSLPWQGLKAATK---RQKYERISEKKMSTPI-------------------------------------EVL  242 (296)
T ss_dssp             HHHHHHHHSSCTTSSCCCSSS---SSHHHHHHHHHHHSCH-------------------------------------HHH
T ss_pred             HHHHHHhcCCCCCcccchhhh---hhhhhhhhcccccchh-------------------------------------hhh
Confidence            999999999999976543221   1111111111000000                                     011


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ....++.+.+||.+||+.||.+|||+.++++
T Consensus       243 ~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          243 CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             TTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             hccCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence            1344678999999999999999999999987

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-43  Score=371.04  Aligned_cols=256  Identities=21%  Similarity=0.278  Sum_probs=193.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      .+|.+.++||+|+||+||. ....+++.||||++....  ...+.+|+.+|+.+.     .|||||++++++.    +..
T Consensus        24 ~~y~~~~~LG~G~~G~V~~-~~~~~~~~vAvK~~~~~~--~~~~~~E~~~l~~l~-----~HpnIv~l~~~~~----~~~   91 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVY-RGMFDNRDVAVKRILPEC--FSFADREVQLLRESD-----EHPNVIRYFCTEK----DRQ   91 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEE-EEESSSSEEEEEEECTTT--EEECHHHHHHHHHSC-----CCTTBCCEEEEEE----ETT
T ss_pred             EEEecCCeeecCcCEEEEE-EEEeCCeEEEEEEECHHH--HHHHHHHHHHHHhcc-----CCCCcCeEEEEEe----cCC
Confidence            4699999999999999764 345678999999886543  234678999999884     6899999999988    447


Q ss_pred             EEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCc
Q 045988          122 HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPM  201 (530)
Q Consensus       122 ~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~  201 (530)
                      ..|||||||+++|.+++..... .+.+..+..++.||+.||+|||++ |||||||||+|||+.....             
T Consensus        92 ~~~lv~E~~~g~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlKp~NIll~~~~~-------------  156 (432)
T 3p23_A           92 FQYIAIELCAATLQEYVEQKDF-AHLGLEPITLLQQTTSGLAHLHSL-NIVHRDLKPHNILISMPNA-------------  156 (432)
T ss_dssp             EEEEEEECCSEEHHHHHHSSSC-CCCSSCHHHHHHHHHHHHHHHHHT-TCCCCCCSTTSEEECCCBT-------------
T ss_pred             EEEEEEECCCCCHHHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHC-cCEeCCCCHHHEEEecCCC-------------
Confidence            8999999998899999975432 355556789999999999999997 9999999999999954110             


Q ss_pred             cccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 045988          202 LLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEG  281 (530)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (530)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (432)
T 3p23_A          157 --------------------------------------------------------------------------------  156 (432)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcC---CCCCCcchhHHHHHH
Q 045988          282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLG---SKYSTPADLWSFACI  352 (530)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~---~~~~~~~DiWSlG~i  352 (530)
                                        .....++|+|||+|.....      .....+||+.|+|||++.+   ..++.++|||||||+
T Consensus       157 ------------------~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~i  218 (432)
T 3p23_A          157 ------------------HGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCV  218 (432)
T ss_dssp             ------------------TTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHH
T ss_pred             ------------------CCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHH
Confidence                              0034688999999975432      2345679999999999984   557889999999999


Q ss_pred             HHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          353 CFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       353 l~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      +|+|++ |.+||....       ......   ..+.....                                   .....
T Consensus       219 l~ellt~g~~pf~~~~-------~~~~~~---~~~~~~~~-----------------------------------~~~~~  253 (432)
T 3p23_A          219 FYYVISEGSHPFGKSL-------QRQANI---LLGACSLD-----------------------------------CLHPE  253 (432)
T ss_dssp             HHHHHTTSCBTTBSTT-------THHHHH---HTTCCCCT-----------------------------------TSCTT
T ss_pred             HHHHHcCCCCCcchhh-------HHHHHH---HhccCCcc-----------------------------------ccCcc
Confidence            999999 999995321       111111   11111000                                   00111


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      ...+..+.+||.+||+.||.+|||+.|+|+||||..
T Consensus       254 ~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp~f~~  289 (432)
T 3p23_A          254 KHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWS  289 (432)
T ss_dssp             CHHHHHHHHHHHHHSCSSGGGSCCHHHHHTSTTTCC
T ss_pred             ccccHHHHHHHHHHHhCCHhhCCCHHHHHhCccccC
Confidence            234567889999999999999999999999999974

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=3.5e-43  Score=357.49  Aligned_cols=270  Identities=18%  Similarity=0.214  Sum_probs=199.9

Q ss_pred             ccccCcEee---CCCEEEEEEeccccceEEEEEEeCC---CCeEEEEEEeccccc------------chHHHHHHHHHHH
Q 045988           32 AVRMGDTFK---NGRYVVQSKLGWGHFSTVWLAWDTQ---TSHYVALKVQKSAQH------------YTEAALDEIKILK   93 (530)
Q Consensus        32 ~~~~g~~~~---~~~y~i~~~LG~G~fg~Vy~a~~~~---~~~~vAiK~~~~~~~------------~~~~~~~Ei~il~   93 (530)
                      |+..|..+.   .++|++.+.||+|+||+||+|.+..   ++..||||++.....            ....+.+|+.+++
T Consensus        24 ~l~~g~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~  103 (345)
T 2v62_A           24 PFPEGKVLDDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERK  103 (345)
T ss_dssp             -CCTTCEEECTTSCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cCCCCCeeccccCceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhc
Confidence            566677774   4799999999999999999999987   789999998876432            1122345555555


Q ss_pred             HhhcCCCCCCcceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcee
Q 045988           94 QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIH  173 (530)
Q Consensus        94 ~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvH  173 (530)
                      .+      .||||+++++++..........||||||++++|.+++....  .+++..+..|+.||+.||+|||++ ||+|
T Consensus       104 ~l------~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~-~ivH  174 (345)
T 2v62_A          104 QL------DYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHEN-EYVH  174 (345)
T ss_dssp             TC------SCCCCCCEEEEEEEESSSCEEEEEEEECEEEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHT-TEEC
T ss_pred             cc------cccCcceeecccccccCCCcEEEEEEeccCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CeeC
Confidence            55      78999999999987544568999999999999999986543  599999999999999999999997 9999


Q ss_pred             ccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCC
Q 045988          174 TDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTS  253 (530)
Q Consensus       174 rDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (530)
                      |||||+|||++...                                                                  
T Consensus       175 ~Dlkp~NIll~~~~------------------------------------------------------------------  188 (345)
T 2v62_A          175 GDIKAANLLLGYKN------------------------------------------------------------------  188 (345)
T ss_dssp             SCCSGGGEEEESSS------------------------------------------------------------------
T ss_pred             CCcCHHHEEEccCC------------------------------------------------------------------
Confidence            99999999996510                                                                  


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------cCCC
Q 045988          254 VDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------FTND  323 (530)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------~~~~  323 (530)
                                                                      ...+||+|||++......          ....
T Consensus       189 ------------------------------------------------~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~  220 (345)
T 2v62_A          189 ------------------------------------------------PDQVYLADYGLSYRYCPNGNHKQYQENPRKGH  220 (345)
T ss_dssp             ------------------------------------------------TTSEEECCCTTCEESSGGGCCCCCCCCGGGCS
T ss_pred             ------------------------------------------------CCcEEEEeCCCceecccccccccchhcccccc
Confidence                                                            236999999999653211          2455


Q ss_pred             CCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccc
Q 045988          324 IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF  403 (530)
Q Consensus       324 ~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  403 (530)
                      .||+.|+|||++.+..++.++|||||||++|+|++|..||.....    ................|..+.          
T Consensus       221 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~----~~~~~~~~~~~~~~~~~~~~~----------  286 (345)
T 2v62_A          221 NGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLK----DPVAVQTAKTNLLDELPQSVL----------  286 (345)
T ss_dssp             CSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTT----CHHHHHHHHHHHHHTTTHHHH----------
T ss_pred             CCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccccc----ccHHHHHHHHhhcccccHHHH----------
Confidence            799999999999999999999999999999999999999953221    111112222222222221110          


Q ss_pred             cccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          404 NRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                             ........+.++.+||.+||..||.+|||+.++++
T Consensus       287 -----------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  321 (345)
T 2v62_A          287 -----------------------KWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKK  321 (345)
T ss_dssp             -----------------------HHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             -----------------------hhccccccHHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence                                   00111245678999999999999999999999987

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=1.4e-42  Score=344.56  Aligned_cols=256  Identities=21%  Similarity=0.253  Sum_probs=199.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.+.||+|+||.||+|++..+++.||||++..... ...+.+|+.+++.+.|      ++++..+..+..   .+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~------~~~i~~~~~~~~---~~   77 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQG------GVGIPTIRWCGA---EG   77 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS-CCHHHHHHHHHHHHTT------STTCCCEEEEEE---ET
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc-hhHHHHHHHHHHHhhc------CCCCCccccccC---CC
Confidence            6899999999999999999999999999999999876543 4568899999999953      444444444433   34


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ...++||||++++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++...             
T Consensus        78 ~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~NIl~~~~~-------------  142 (296)
T 3uzp_A           78 DYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLMGLGK-------------  142 (296)
T ss_dssp             TEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECCGG-------------
T ss_pred             CceEEEEEecCCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHeEEecCC-------------
Confidence            7899999999999999997433 4599999999999999999999997 999999999999994210             


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (296)
T 3uzp_A          143 --------------------------------------------------------------------------------  142 (296)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------cCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                          ....+||+|||++......          .....||+.|+|||++.+..++.++||||||
T Consensus       143 --------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG  202 (296)
T 3uzp_A          143 --------------------KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLG  202 (296)
T ss_dssp             --------------------GTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHH
T ss_pred             --------------------CCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHH
Confidence                                0457999999999754322          2455799999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|..||.......   ....+..+....-..+.                                     ...
T Consensus       203 ~il~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~-------------------------------------~~~  242 (296)
T 3uzp_A          203 YVLMYFNLGSLPWQGLKAAT---KRQKYERISEKKMSTPI-------------------------------------EVL  242 (296)
T ss_dssp             HHHHHHHHSSCTTSSCCCSS---SSSHHHHHHHHHHHSCH-------------------------------------HHH
T ss_pred             HHHHHHHhCCCCCCCcCchh---hhhhhhhhcccccCCch-------------------------------------HHH
Confidence            99999999999997644222   11222222111000000                                     011


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ....++.+.+||.+||+.||.+|||+.++++
T Consensus       243 ~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  273 (296)
T 3uzp_A          243 CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             TTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             HhhCCHHHHHHHHHHHhcCcCcCCCHHHHHH
Confidence            2345678999999999999999999999886

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=3.5e-43  Score=350.15  Aligned_cols=251  Identities=25%  Similarity=0.386  Sum_probs=194.9

Q ss_pred             ccccCcEeeCCCEEEE-EEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           32 AVRMGDTFKNGRYVVQ-SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        32 ~~~~g~~~~~~~y~i~-~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      ++..|+.+  ++|.+. +.||+|+||.||+|.+..+++.||||++..    .....+|+.++.++.     .||||++++
T Consensus         9 ~~~~~~~~--~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----~~~~~~e~~~~~~~~-----~h~~i~~~~   77 (299)
T 3m2w_A            9 QIKKNAII--DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRAS-----QCPHIVRIV   77 (299)
T ss_dssp             CCBCSCGG--GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHT-----TSTTBCCEE
T ss_pred             cCcccccc--cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc----cHHHHHHHHHHHHhc-----cCCCchhHH
Confidence            34555555  678887 789999999999999999999999999865    346778999986654     789999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ++|.........+||||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++...  
T Consensus        78 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~~~--  154 (299)
T 3m2w_A           78 DVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSKR--  154 (299)
T ss_dssp             EEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESSSS--
T ss_pred             hhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEecCC--
Confidence            99986433467899999999 78999999876555699999999999999999999997 999999999999995410  


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (299)
T 3m2w_A          155 --------------------------------------------------------------------------------  154 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                     .+..++|+|||++....                   +..|+.++|||||
T Consensus       155 -------------------------------~~~~~kl~Dfg~a~~~~-------------------~~~~~~~~Diwsl  184 (299)
T 3m2w_A          155 -------------------------------PNAILKLTDFGFAKETT-------------------GEKYDKSCDMWSL  184 (299)
T ss_dssp             -------------------------------TTCCEEECCCTTCEECT-------------------TCGGGGHHHHHHH
T ss_pred             -------------------------------CCCcEEEeccccccccc-------------------cccCCchhhHHHH
Confidence                                           03469999999985322                   2457889999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|.+||.........             ...                               ...+......
T Consensus       185 G~il~el~tg~~pf~~~~~~~~~-------------~~~-------------------------------~~~~~~~~~~  220 (299)
T 3m2w_A          185 GVIMYILLCGYPPFYSNHGLAIS-------------PGM-------------------------------KTRIRMGQYE  220 (299)
T ss_dssp             HHHHHHHHHSSCSCCC--------------------CCS-------------------------------CCSSCTTCCS
T ss_pred             HHHHHHHHHCCCCCCCCcchhhh-------------HHH-------------------------------HHHHhhcccc
Confidence            99999999999999643311100             000                               0000000011


Q ss_pred             CC----hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          430 FS----EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       430 ~~----~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ++    ...++++.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       221 ~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~~~~~~~  265 (299)
T 3m2w_A          221 FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTK  265 (299)
T ss_dssp             SCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTGGG
T ss_pred             CCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcChhhccccc
Confidence            11    245788999999999999999999999999999986543

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=3.6e-43  Score=354.77  Aligned_cols=254  Identities=21%  Similarity=0.306  Sum_probs=198.5

Q ss_pred             cccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeE----EEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcce
Q 045988           33 VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHY----VALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCV  106 (530)
Q Consensus        33 ~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~----vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~I  106 (530)
                      ..+.+.++.++|++.++||+|+||+||+|++..+++.    ||+|.+....  .....+.+|+.+++++      .||||
T Consensus         6 ~~~~~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i   79 (327)
T 3poz_A            6 QALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------DNPHV   79 (327)
T ss_dssp             CCSSEECCGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHC------CBTTB
T ss_pred             HHHHhhcCHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhC------CCCCE
Confidence            3566778889999999999999999999999888765    4777665432  3456788999999999      78889


Q ss_pred             eEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          107 VKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       107 v~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      +++++++...     ..++||||+ +++|.+++.... ..+++..+..|+.||+.||+|||++ ||+||||||+|||++.
T Consensus        80 v~~~~~~~~~-----~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~Dikp~NIll~~  152 (327)
T 3poz_A           80 CRLLGICLTS-----TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLVKT  152 (327)
T ss_dssp             CCEEEEEESS-----SEEEEEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEE
T ss_pred             eEEEEEEecC-----CeEEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhC-CeeCCCCChheEEECC
Confidence            9999999842     378899999 899999987533 4599999999999999999999997 9999999999999966


Q ss_pred             ccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q 045988          186 MIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVED  265 (530)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (327)
T 3poz_A          153 --------------------------------------------------------------------------------  152 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCC
Q 045988          266 QQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKY  340 (530)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~  340 (530)
                                                          ++.+||+|||+++.....     .....||+.|+|||++.+..|
T Consensus       153 ------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  196 (327)
T 3poz_A          153 ------------------------------------PQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIY  196 (327)
T ss_dssp             ------------------------------------TTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCC
T ss_pred             ------------------------------------CCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCC
Confidence                                                567999999999754322     223456889999999999999


Q ss_pred             CCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          341 STPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       341 ~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      +.++|||||||++|+|++ |..||.+...      .. +..+....                                  
T Consensus       197 ~~~~Di~slG~il~ellt~g~~p~~~~~~------~~-~~~~~~~~----------------------------------  235 (327)
T 3poz_A          197 THQSDVWSYGVTVWELMTFGSKPYDGIPA------SE-ISSILEKG----------------------------------  235 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCCG------GG-HHHHHHTT----------------------------------
T ss_pred             CchhhhhhhHHHHHHHHhcCCCCccCCCH------HH-HHHHHHcC----------------------------------
Confidence            999999999999999999 9999965431      11 11111100                                  


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                            .....+...+.++.+||.+||+.||.+|||+.|++++
T Consensus       236 ------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  272 (327)
T 3poz_A          236 ------ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             ------CCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHH
T ss_pred             ------CCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence                  0112234556789999999999999999999999976

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=1.3e-43  Score=349.65  Aligned_cols=254  Identities=21%  Similarity=0.244  Sum_probs=208.2

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ++..+ .++|++.+.||+|+||.||+|.+..+++.||+|++....   +.+.+|+++++++      .||||+++++++.
T Consensus         5 ~~~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~l~~l------~h~~i~~~~~~~~   74 (284)
T 2a19_B            5 VDKRF-GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKL------DHVNIVHYNGCWD   74 (284)
T ss_dssp             CCHHH-HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS---GGGHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             ccchh-ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc---HHHHHHHHHHHhC------CCCCEEEEeeeEe
Confidence            44555 578999999999999999999999999999999987653   4677899999999      7888999999886


Q ss_pred             ecC------------CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcE
Q 045988          115 HSG------------PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENV  181 (530)
Q Consensus       115 ~~~------------~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NI  181 (530)
                      ...            .....+++||||+ +++|.+++.......+++..+..++.||+.||.|||++ ||+||||||+||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dlkp~Ni  153 (284)
T 2a19_B           75 GFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK-KLINRDLKPSNI  153 (284)
T ss_dssp             EEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGE
T ss_pred             ccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCCHHHE
Confidence            411            1245689999999 77999999876556799999999999999999999997 999999999999


Q ss_pred             EEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 045988          182 LLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGD  261 (530)
Q Consensus       182 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (530)
                      |++.                                                                            
T Consensus       154 l~~~----------------------------------------------------------------------------  157 (284)
T 2a19_B          154 FLVD----------------------------------------------------------------------------  157 (284)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EEcC----------------------------------------------------------------------------
Confidence            9966                                                                            


Q ss_pred             CcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCC
Q 045988          262 SVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                              ++.++|+|||++.....  ......||+.|+|||++.+..
T Consensus       158 ----------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  197 (284)
T 2a19_B          158 ----------------------------------------TKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQD  197 (284)
T ss_dssp             ----------------------------------------TTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSC
T ss_pred             ----------------------------------------CCCEEECcchhheeccccccccccCCcccccChhhhccCC
Confidence                                                    46799999999876432  234567999999999999989


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      ++.++|||||||++|+|++|..||..         ..   .....+                                  
T Consensus       198 ~~~~~Di~slG~il~~l~~~~~~~~~---------~~---~~~~~~----------------------------------  231 (284)
T 2a19_B          198 YGKEVDLYALGLILAELLHVCDTAFE---------TS---KFFTDL----------------------------------  231 (284)
T ss_dssp             CCTHHHHHHHHHHHHHHHSCCSSHHH---------HH---HHHHHH----------------------------------
T ss_pred             CcchhhhHHHHHHHHHHHhcCCcchh---------HH---HHHHHh----------------------------------
Confidence            99999999999999999999988731         00   000000                                  


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                            ....++...+..+.+||.+||..||.+|||+.|+++|.|.-.
T Consensus       232 ------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~  273 (284)
T 2a19_B          232 ------RDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK  273 (284)
T ss_dssp             ------HTTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHT
T ss_pred             ------hcccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence                  000122345678899999999999999999999999987643

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-43  Score=356.90  Aligned_cols=264  Identities=14%  Similarity=0.180  Sum_probs=203.0

Q ss_pred             ccccCcEee---CCCEEEEEEeccccceEEEEEEeCCC--------CeEEEEEEecccccchHHHHHHHHHHHHhhcCCC
Q 045988           32 AVRMGDTFK---NGRYVVQSKLGWGHFSTVWLAWDTQT--------SHYVALKVQKSAQHYTEAALDEIKILKQIAEGDP  100 (530)
Q Consensus        32 ~~~~g~~~~---~~~y~i~~~LG~G~fg~Vy~a~~~~~--------~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~  100 (530)
                      ++..|+.+.   .++|++.+.||+|+||.||+|++..+        ++.||||++...    ..+.+|+++++++     
T Consensus        29 ~l~~g~~i~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----~~~~~E~~~l~~l-----   99 (352)
T 2jii_A           29 ALPTGTVLTDKSGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----GRLFNEQNFFQRA-----   99 (352)
T ss_dssp             CCCTTCEEECTTSCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT----STHHHHHHHHHHH-----
T ss_pred             hCCCCceeecccCCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----chHHHHHHHHHHh-----
Confidence            567788774   47999999999999999999999874        889999998764    4678999999999     


Q ss_pred             CCCcceeE---------------ecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Q 045988          101 DDKKCVVK---------------LLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHL  165 (530)
Q Consensus       101 ~~h~~Iv~---------------~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~L  165 (530)
                       .||||++               +++++..   .+...||||||++++|.+++.......+++..+..++.||+.||+||
T Consensus       100 -~h~niv~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~L  175 (352)
T 2jii_A          100 -AKPLQVNKWKKLYSTPLLAIPTCMGFGVH---QDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFL  175 (352)
T ss_dssp             -CCHHHHHHHHHHTTCTTCSCCCCCEEEEE---TTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHH
T ss_pred             -cccchhhhhhhhccCCccCccchhhcccc---CCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence             6777776               4555543   24789999999999999999865445699999999999999999999


Q ss_pred             HhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCC
Q 045988          166 HRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSK  245 (530)
Q Consensus       166 H~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (530)
                      |++ ||+||||||+|||++...                                                          
T Consensus       176 H~~-~ivH~Dikp~NIl~~~~~----------------------------------------------------------  196 (352)
T 2jii_A          176 HEN-EYVHGNVTAENIFVDPED----------------------------------------------------------  196 (352)
T ss_dssp             HHT-TCBCSCCCGGGEEEETTE----------------------------------------------------------
T ss_pred             HhC-CccCCCCCHHHEEEcCCC----------------------------------------------------------
Confidence            997 999999999999996510                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------
Q 045988          246 PSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------  319 (530)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------  319 (530)
                                                                              ...++|+|||++......      
T Consensus       197 --------------------------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~  220 (352)
T 2jii_A          197 --------------------------------------------------------QSQVTLAGYGFAFRYCPSGKHVAY  220 (352)
T ss_dssp             --------------------------------------------------------EEEEEECCGGGCBCSSGGGCCCCC
T ss_pred             --------------------------------------------------------CceEEEecCcceeeccCCCccccc
Confidence                                                                    127999999999653321      


Q ss_pred             ----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHH-HhCCCchhhhc
Q 045988          320 ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMME-LLGMMPRKIAF  394 (530)
Q Consensus       320 ----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~-~~g~~p~~~~~  394 (530)
                          .....||+.|+|||++.+..++.++|||||||++|+|++|..||.....     ....+..... .....+. +. 
T Consensus       221 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-----~~~~~~~~~~~~~~~~~~-~~-  293 (352)
T 2jii_A          221 VEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLP-----NTEDIMKQKQKFVDKPGP-FV-  293 (352)
T ss_dssp             CTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTT-----CHHHHHHHHHHHHHSCCC-EE-
T ss_pred             cccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCc-----CHHHHHHHHHhccCChhh-hh-
Confidence                2345799999999999998999999999999999999999999964321     1122222211 1111100 00 


Q ss_pred             CCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          395 GGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                                     .........+..+.+||.+||..||.+|||+.++++
T Consensus       294 -------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          294 -------------------------------GPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             -------------------------------CTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             -------------------------------hhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHH
Confidence                                           000011234688999999999999999999999986

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=3.9e-43  Score=348.86  Aligned_cols=265  Identities=20%  Similarity=0.265  Sum_probs=202.3

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEE----eCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAW----DTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~----~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      .+..++|+++++||+|+||+||+|+    +..+++.||||++.... .....+.+|+.+|+++      .||||++++++
T Consensus         6 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~   79 (295)
T 3ugc_A            6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL------QHDNIVKYKGV   79 (295)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTC------CCTTBCCEEEE
T ss_pred             cCCHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEE
Confidence            3457899999999999999999998    66789999999887643 3346778999999999      78899999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +...  ....+++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.      
T Consensus        80 ~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dikp~Nil~~~------  149 (295)
T 3ugc_A           80 CYSA--GRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK-RYIHRDLATRNILVEN------  149 (295)
T ss_dssp             ECHH--HHTSCEEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE------
T ss_pred             EecC--CCCceEEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCHhhEEEcC------
Confidence            8754  335689999999 889999997543 3489999999999999999999997 9999999999999966      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (295)
T 3ugc_A          150 --------------------------------------------------------------------------------  149 (295)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcch
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                    ++.+||+|||++......      .....+|..|+|||++.+..++.++|
T Consensus       150 ------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  199 (295)
T 3ugc_A          150 ------------------------------ENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASD  199 (295)
T ss_dssp             ------------------------------TTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHH
T ss_pred             ------------------------------CCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHH
Confidence                                          467999999999754322      23345677899999999989999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh-
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL-  424 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  424 (530)
                      ||||||++|+|++|..||....           .......+..+......                      ....... 
T Consensus       200 i~slG~~l~~l~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~----------------------~~~~~~~~  246 (295)
T 3ugc_A          200 VWSFGVVLYELFTYIEKSKSPP-----------AEFMRMIGNDKQGQMIV----------------------FHLIELLK  246 (295)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSHH-----------HHHHHHHCTTCCTHHHH----------------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCCCh-----------HHHHhhhcCccccchhH----------------------HHHHHHHh
Confidence            9999999999999999984211           11111222111000000                      0000000 


Q ss_pred             -hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          425 -IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       425 -~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                       ......+...++++.+||.+||+.||.+|||+.|+++
T Consensus       247 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          247 NNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence             0112334567789999999999999999999999986

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=6.6e-43  Score=366.53  Aligned_cols=273  Identities=23%  Similarity=0.318  Sum_probs=195.7

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +.+.+ .+.|.+.+.||+|+||+||.+. ..+|+.||||++....  .+.+.+|+.+|+++.     .|||||++++++.
T Consensus         9 ~~~~l-~~~~~~~~~LG~G~~g~V~~~~-~~~g~~vAvK~~~~~~--~~~~~~E~~~l~~l~-----~HpnIv~~~~~~~   79 (434)
T 2rio_A            9 FEQSL-KNLVVSEKILGYGSSGTVVFQG-SFQGRPVAVKRMLIDF--CDIALMEIKLLTESD-----DHPNVIRYYCSET   79 (434)
T ss_dssp             CSCSC-SSCEEEEEEEEECSTTCEEEEE-ESSSSEEEEEEEEGGG--HHHHHHHHHHHHHHT-----TSTTBCCEEEEEE
T ss_pred             hhhhh-hheeeccCeEeeCCCeEEEEEE-EECCeEEEEEEEcHHH--HHHHHHHHHHHHhcc-----CCCCcCeEEEEEe
Confidence            34444 5678889999999999998764 5679999999886543  456789999998874     6899999999988


Q ss_pred             ecCCCCcEEEEEEeccCcCHHHHHHhhccCC-----CCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          115 HSGPNGQHVCMVFEYLGENLLTLIKYADYRG-----VPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~-----l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                          ....+|||||||+++|.+++.......     .++..+..++.||+.||+|||++ |||||||||+|||++.....
T Consensus        80 ----~~~~~~lv~E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDLkp~NILl~~~~~~  154 (434)
T 2rio_A           80 ----TDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL-KIIHRDLKPQNILVSTSSRF  154 (434)
T ss_dssp             ----CSSEEEEEECCCSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEECCHHH
T ss_pred             ----cCCeEEEEEecCCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC-CccccCCChHhEEEecCccc
Confidence                557899999999889999997543211     12334578999999999999997 99999999999999652100


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                      ..                                     .                                        
T Consensus       155 ~~-------------------------------------~----------------------------------------  157 (434)
T 2rio_A          155 TA-------------------------------------D----------------------------------------  157 (434)
T ss_dssp             HS-------------------------------------C----------------------------------------
T ss_pred             cc-------------------------------------c----------------------------------------
Confidence            00                                     0                                        


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcC-----
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLG-----  337 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~-----  337 (530)
                                                .........+||+|||++......       ....+||+.|+|||++.+     
T Consensus       158 --------------------------~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  211 (434)
T 2rio_A          158 --------------------------QQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQ  211 (434)
T ss_dssp             --------------------------CTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTS
T ss_pred             --------------------------cccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccc
Confidence                                      000001457999999999764322       234579999999999976     


Q ss_pred             --CCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchh
Q 045988          338 --SKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR  414 (530)
Q Consensus       338 --~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  414 (530)
                        ..++.++|||||||++|+|++ |..||....      . .. ..+....-..+.                        
T Consensus       212 ~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~------~-~~-~~i~~~~~~~~~------------------------  259 (434)
T 2rio_A          212 TKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY------S-RE-SNIIRGIFSLDE------------------------  259 (434)
T ss_dssp             CCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTT------T-HH-HHHHHTCCCCCC------------------------
T ss_pred             cccCcchhhhhHhHHHHHHHHHhCCCCCCCCch------h-hH-HHHhcCCCCccc------------------------
Confidence              568999999999999999999 999995322      1 11 111110000000                        


Q ss_pred             cccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                           .      ........++++.+||.+||+.||.+|||+.|+|+||||..
T Consensus       260 -----~------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp~f~~  301 (434)
T 2rio_A          260 -----M------KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWP  301 (434)
T ss_dssp             -----C------TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSC
T ss_pred             -----c------cccccccchHHHHHHHHHHhhCChhhCCCHHHHHhCCccCC
Confidence                 0      00112345788999999999999999999999999999964

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=8e-43  Score=359.89  Aligned_cols=252  Identities=25%  Similarity=0.360  Sum_probs=203.5

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCC-------CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQ-------TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~-------~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      .+..++|.+.++||+|+||+||+|++..       .+..||||+++...  .....+.+|+++++++.     .||||++
T Consensus        65 ~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hpnIv~  139 (382)
T 3tt0_A           65 ELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-----KHKNIIN  139 (382)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCC
T ss_pred             ccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhc-----CCchhhh
Confidence            4556899999999999999999998753       34689999987653  23466889999999995     6888999


Q ss_pred             ecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcee
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIH  173 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvH  173 (530)
                      +++++.    ....+|+||||+ +++|.+++.....              ..+++..+..|+.||+.||+|||++ ||+|
T Consensus       140 ~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH  214 (382)
T 3tt0_A          140 LLGACT----QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK-KCIH  214 (382)
T ss_dssp             EEEEEC----SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred             heeeec----cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC-CEec
Confidence            999998    446799999999 8899999976542              3489999999999999999999997 9999


Q ss_pred             ccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCC
Q 045988          174 TDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTS  253 (530)
Q Consensus       174 rDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (530)
                      |||||+||||+.                                                                    
T Consensus       215 ~Dlkp~NIll~~--------------------------------------------------------------------  226 (382)
T 3tt0_A          215 RDLAARNVLVTE--------------------------------------------------------------------  226 (382)
T ss_dssp             SCCCGGGEEECT--------------------------------------------------------------------
T ss_pred             CCCCcceEEEcC--------------------------------------------------------------------
Confidence            999999999954                                                                    


Q ss_pred             CCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCC
Q 045988          254 VDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQ  328 (530)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~  328 (530)
                                                                      ++.+||+|||++.....     ......+|+.
T Consensus       227 ------------------------------------------------~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~  258 (382)
T 3tt0_A          227 ------------------------------------------------DNVMKIADFGLARDIHHIDYYKKTTNGRLPVK  258 (382)
T ss_dssp             ------------------------------------------------TCCEEECSCSCCCCSSCCCTTCCCTTCCCGGG
T ss_pred             ------------------------------------------------CCcEEEcccCcccccccccccccccCCCCCcc
Confidence                                                            45799999999975432     2334457889


Q ss_pred             ccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccC
Q 045988          329 YRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG  407 (530)
Q Consensus       329 y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  407 (530)
                      |+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+...                       
T Consensus       259 y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~------~~~~~~~~~~~-----------------------  309 (382)
T 3tt0_A          259 WMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP------VEELFKLLKEG-----------------------  309 (382)
T ss_dssp             GSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHTT-----------------------
T ss_pred             eeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcC-----------------------
Confidence            999999999999999999999999999999 999996432      11111111000                       


Q ss_pred             ccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                        .....+...++++.+||.+||..||.+|||+.|++++
T Consensus       310 ------------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  346 (382)
T 3tt0_A          310 ------------------HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  346 (382)
T ss_dssp             ------------------CCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------CCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                              0112234557889999999999999999999999986

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=3.3e-44  Score=388.73  Aligned_cols=296  Identities=25%  Similarity=0.300  Sum_probs=207.0

Q ss_pred             CCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCc
Q 045988           27 RGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKK  104 (530)
Q Consensus        27 ~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~  104 (530)
                      .|||+|...|..+  ++|++.++||+|+||+||+|.+..+|+.||||++...  ....+.+.+|+.+++++      .||
T Consensus         1 GGG~~p~~pg~~~--grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L------~Hp   72 (676)
T 3qa8_A            1 GGGRSPSLPTQTC--GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL------NHP   72 (676)
T ss_dssp             ------------------CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHC------CBT
T ss_pred             CCCCCCCCCCCCC--CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhC------CCC
Confidence            4789999999987  8999999999999999999999999999999988754  23356688999999999      788


Q ss_pred             ceeEecceeeecC--CCCcEEEEEEecc-CcCHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          105 CVVKLLDHFKHSG--PNGQHVCMVFEYL-GENLLTLIKYADY-RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       105 ~Iv~~~~~~~~~~--~~~~~~~lVmE~~-~~~L~~~i~~~~~-~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                      ||+++++++....  ..+...|+||||| +++|.+++..... ..+++..++.++.||+.||+|||++ ||+||||||+|
T Consensus        73 nIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~-gIVHrDLKP~N  151 (676)
T 3qa8_A           73 NVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN-RIIHRDLKPEN  151 (676)
T ss_dssp             TBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT-TBCCCCCCSTT
T ss_pred             CCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCCHHH
Confidence            8999999876421  1256789999999 8999999975432 2589999999999999999999997 99999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      ||++....                                                                        
T Consensus       152 ILl~~~g~------------------------------------------------------------------------  159 (676)
T 3qa8_A          152 IVLQPGPQ------------------------------------------------------------------------  159 (676)
T ss_dssp             EEEECCSS------------------------------------------------------------------------
T ss_pred             eEeecCCC------------------------------------------------------------------------
Confidence            99965210                                                                        


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCC
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~  338 (530)
                                                               ...++|+|||.+.....  ......||+.|+|||++.+.
T Consensus       160 -----------------------------------------~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~  198 (676)
T 3qa8_A          160 -----------------------------------------RLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQK  198 (676)
T ss_dssp             -----------------------------------------SCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCS
T ss_pred             -----------------------------------------ceeEEEcccccccccccccccccccCCcccCChHHhccC
Confidence                                                     24589999999976433  23456899999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccccc-ccCccccchhccc
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFN-RHGDLRHIRRLRF  417 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  417 (530)
                      .++.++|||||||++|+|++|..||.+...         ..   ...+......    ......+. ..+...       
T Consensus       199 ~~s~ksDIwSLGviLyeLltG~~Pf~~~~~---------~~---~~~~~i~~~~----~~~~~~~~~l~g~~~-------  255 (676)
T 3qa8_A          199 KYTVTVDYWSFGTLAFECITGFRPFLPNWQ---------PV---QWHGKVREKS----NEHIVVYDDLTGAVK-------  255 (676)
T ss_dssp             CCSTTHHHHHHHHHHHHHHSSCSSCCSSCH---------HH---HSSTTCC----------CCSCCCCSSSCC-------
T ss_pred             CCCchhHHHHHHHHHHHHHHCCCCCCcccc---------hh---hhhhhhhccc----chhhhhhhhhccccc-------
Confidence            999999999999999999999999964210         00   0000000000    00000000 000000       


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                        +.........+....++.+.+||.+||.+||.+|||+.|+|+||||+.-.
T Consensus       256 --~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~  305 (676)
T 3qa8_A          256 --FSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALD  305 (676)
T ss_dssp             --CCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHH
T ss_pred             --cccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHH
Confidence              00111111234556788999999999999999999999999999997643

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=2.1e-43  Score=356.15  Aligned_cols=253  Identities=21%  Similarity=0.261  Sum_probs=200.3

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeE----EEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCccee
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHY----VALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVV  107 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~----vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv  107 (530)
                      .+++.++.++|++.++||+|+||+||+|++..+++.    ||+|++....  .....+.+|+.+++.+      .||||+
T Consensus         5 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv   78 (325)
T 3kex_A            5 VLARIFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSL------DHAHIV   78 (325)
T ss_dssp             CCCCBCCTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTC------CCTTBC
T ss_pred             HHHhhcCHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcC------CCCCcC
Confidence            457778889999999999999999999999888765    7777664332  2345667899999888      788999


Q ss_pred             EecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          108 KLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       108 ~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      ++++++..     ...++||||+ +++|.+++... ...+++..+..|+.||+.||+|||++ ||+||||||+|||++. 
T Consensus        79 ~~~~~~~~-----~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dikp~Nil~~~-  150 (325)
T 3kex_A           79 RLLGLCPG-----SSLQLVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLEEH-GMVHRNLAARNVLLKS-  150 (325)
T ss_dssp             CEEEEECB-----SSEEEEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHHHT-TCCCSCCSSTTEEESS-
T ss_pred             eEEEEEcC-----CccEEEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHHhC-CCCCCccchheEEECC-
Confidence            99998863     4689999999 89999998743 23489999999999999999999997 9999999999999954 


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (325)
T 3kex_A          151 --------------------------------------------------------------------------------  150 (325)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCC
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                         ++.+||+|||++......     .....||+.|+|||++.+..++
T Consensus       151 -----------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  195 (325)
T 3kex_A          151 -----------------------------------PSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYT  195 (325)
T ss_dssp             -----------------------------------SSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCC
T ss_pred             -----------------------------------CCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCC
Confidence                                               467999999999764322     2345678899999999988999


Q ss_pred             CcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 TPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 ~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      .++|||||||++|+|++ |..||.+...      ......+...                                    
T Consensus       196 ~~~Di~slG~~l~el~~~g~~p~~~~~~------~~~~~~~~~~------------------------------------  233 (325)
T 3kex_A          196 HQSDVWSYGVTVWELMTFGAEPYAGLRL------AEVPDLLEKG------------------------------------  233 (325)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTSCT------THHHHHHHTT------------------------------------
T ss_pred             hhhHhHHhHHHHHHHHhCCCCCccccCH------HHHHHHHHcC------------------------------------
Confidence            99999999999999999 9999965431      1111111100                                    


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                           .....+...+.++.+||.+||..||.+|||+.|+++|
T Consensus       234 -----~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~  270 (325)
T 3kex_A          234 -----ERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANE  270 (325)
T ss_dssp             -----CBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHH
T ss_pred             -----CCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                 0112233456678899999999999999999999986

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=2e-42  Score=344.59  Aligned_cols=262  Identities=22%  Similarity=0.310  Sum_probs=203.1

Q ss_pred             eCCCEEEEEEeccccceEEEEEE----eCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAW----DTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~----~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ...+|++.++||+|+||.||+|+    +..+++.||+|++....  .....+.+|+.+++++      .||||+++++++
T Consensus        19 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~   92 (302)
T 4e5w_A           19 EKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL------YHENIVKYKGIC   92 (302)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTC------CCTTBCCEEEEE
T ss_pred             hhhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhC------CCCCeeeeeeEE
Confidence            35789999999999999999998    67789999999987543  3346788999999999      788899999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      ...  ....+++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.       
T Consensus        93 ~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~Nil~~~-------  161 (302)
T 4e5w_A           93 TED--GGNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGSR-QYVHRDLAARNVLVES-------  161 (302)
T ss_dssp             EC-----CCEEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE-------
T ss_pred             ecC--CCceEEEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhcC-CcccCCCchheEEEcC-------
Confidence            864  336789999999 889999986443 4499999999999999999999997 9999999999999966       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (302)
T 4e5w_A          162 --------------------------------------------------------------------------------  161 (302)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                   ++.++|+|||++.....      ......||..|+|||++.+..++.++||
T Consensus       162 -----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  212 (302)
T 4e5w_A          162 -----------------------------EHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDV  212 (302)
T ss_dssp             -----------------------------TTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHH
T ss_pred             -----------------------------CCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhH
Confidence                                         46799999999975432      2345568889999999998889999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh--
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL--  424 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  424 (530)
                      |||||++|+|++|..||..           ....+....+........               ..        .....  
T Consensus       213 ~slG~il~~l~~g~~p~~~-----------~~~~~~~~~~~~~~~~~~---------------~~--------~~~~~~~  258 (302)
T 4e5w_A          213 WSFGVTLHELLTYCDSDSS-----------PMALFLKMIGPTHGQMTV---------------TR--------LVNTLKE  258 (302)
T ss_dssp             HHHHHHHHHHHTTTCGGGS-----------HHHHHHHHHCSCCGGGHH---------------HH--------HHHHHHT
T ss_pred             HHHHHHHHHHHHccCCCcc-----------hhhHHhhccCCcccccCH---------------HH--------HHHHHhc
Confidence            9999999999999998731           122222222222111000               00        00000  


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ......+...++.+.+||.+||..||.+|||+.++++
T Consensus       259 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          259 GKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIE  295 (302)
T ss_dssp             TCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            0112344567789999999999999999999999986

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=6.3e-43  Score=352.64  Aligned_cols=261  Identities=23%  Similarity=0.341  Sum_probs=183.0

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc--chHHHHHHHHH-HHHhhcCCCCCCcceeEecceeeec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH--YTEAALDEIKI-LKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~--~~~~~~~Ei~i-l~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ..++|++.+.||+|+||.||+|.+..+|+.||||++.....  ....+.+|+.. ++.+      .||||+++++++.  
T Consensus        20 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~------~h~niv~~~~~~~--   91 (327)
T 3aln_A           20 TAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSS------DCPYIVQFYGALF--   91 (327)
T ss_dssp             CSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSC------CCTTBCCEEEEEE--
T ss_pred             CHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcC------CCCcEeeeeeEEE--
Confidence            45899999999999999999999999999999999876432  23344555553 3333      7999999999998  


Q ss_pred             CCCCcEEEEEEeccCcCHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          117 GPNGQHVCMVFEYLGENLLTLIKYA---DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       117 ~~~~~~~~lVmE~~~~~L~~~i~~~---~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                        .....++||||+.++|.+++...   ....+++..+..++.||+.||.|||++.||+||||||+|||++.        
T Consensus        92 --~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~--------  161 (327)
T 3aln_A           92 --REGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDR--------  161 (327)
T ss_dssp             --CSSEEEEEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEET--------
T ss_pred             --eCCceEEEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcC--------
Confidence              44789999999988998887642   23558999999999999999999998449999999999999965        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (327)
T 3aln_A          162 --------------------------------------------------------------------------------  161 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhh----cCCCCCCcchhH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVL----LGSKYSTPADLW  347 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l----~~~~~~~~~DiW  347 (530)
                                                  ++.+||+|||++......  .....||+.|+|||++    .+..++.++|||
T Consensus       162 ----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~  213 (327)
T 3aln_A          162 ----------------------------SGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVW  213 (327)
T ss_dssp             ----------------------------TTEEEECCCSSSCC------------------------------CCSHHHHH
T ss_pred             ----------------------------CCCEEEccCCCceecccccccccCCCCccccCceeeccccCcCCCCchhhHH
Confidence                                        467999999999754322  2344799999999999    456689999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      ||||++|+|++|..||.......     +.   +.......+.                            .+      .
T Consensus       214 slG~il~~l~~g~~pf~~~~~~~-----~~---~~~~~~~~~~----------------------------~~------~  251 (327)
T 3aln_A          214 SLGITLYELATGRFPYPKWNSVF-----DQ---LTQVVKGDPP----------------------------QL------S  251 (327)
T ss_dssp             HHHHHHHHHHHSCCCSSCC---------------CCCCCSCCC----------------------------CC------C
T ss_pred             HHHHHHHHHHHCCCCCCCcchHH-----HH---HHHHhcCCCC----------------------------CC------C
Confidence            99999999999999996432100     00   0000000000                            00      0


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .......++.+.+||.+||..||.+|||+.++|+||||...
T Consensus       252 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~  292 (327)
T 3aln_A          252 NSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMY  292 (327)
T ss_dssp             CCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhChHHHHh
Confidence            01122456789999999999999999999999999999743

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.7e-43  Score=352.37  Aligned_cols=254  Identities=21%  Similarity=0.288  Sum_probs=198.1

Q ss_pred             cccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEE----EEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcce
Q 045988           33 VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYV----ALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCV  106 (530)
Q Consensus        33 ~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~v----AiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~I  106 (530)
                      ..+.+.+..++|+++++||+|+||+||+|++..+++.|    |+|.+...  ......+.+|+.+++++      .||||
T Consensus         6 ~~~~~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~i   79 (327)
T 3lzb_A            6 QALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------DNPHV   79 (327)
T ss_dssp             --CCEECCTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTC------CBTTB
T ss_pred             hhhhcccCHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhC------CCCCe
Confidence            35677788899999999999999999999998887655    66655432  23456788999999998      78899


Q ss_pred             eEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          107 VKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       107 v~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      +++++++...     ..++||||+ +++|.+++.... ..+++..+..|+.||+.||+|||++ ||+||||||+|||++.
T Consensus        80 v~~~~~~~~~-----~~~~v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIl~~~  152 (327)
T 3lzb_A           80 CRLLGICLTS-----TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLVKT  152 (327)
T ss_dssp             CCCCEEEESS-----SEEEEECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEE
T ss_pred             eEEEEEEecC-----CceEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhC-CCcCCCCCHHHEEEcC
Confidence            9999999842     378899999 899999987543 4599999999999999999999997 9999999999999966


Q ss_pred             ccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q 045988          186 MIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVED  265 (530)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (327)
T 3lzb_A          153 --------------------------------------------------------------------------------  152 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCC
Q 045988          266 QQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKY  340 (530)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~  340 (530)
                                                          ++.+||+|||++......     .....+|+.|+|||++.+..|
T Consensus       153 ------------------------------------~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  196 (327)
T 3lzb_A          153 ------------------------------------PQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIY  196 (327)
T ss_dssp             ------------------------------------TTEEEECCTTC----------------CCCGGGSCHHHHHHCCC
T ss_pred             ------------------------------------CCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCC
Confidence                                                467999999999754322     233456788999999999999


Q ss_pred             CCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCC
Q 045988          341 STPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP  419 (530)
Q Consensus       341 ~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (530)
                      +.++|||||||++|+|++ |.+||.+...      .... .+....                                  
T Consensus       197 ~~~~Di~slG~il~ell~~g~~p~~~~~~------~~~~-~~~~~~----------------------------------  235 (327)
T 3lzb_A          197 THQSDVWSYGVTVWELMTFGSKPYDGIPA------SEIS-SILEKG----------------------------------  235 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCCG------GGHH-HHHHTT----------------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHCCCCCCCCCCH------HHHH-HHHHcC----------------------------------
Confidence            999999999999999999 9999965431      1111 111100                                  


Q ss_pred             chhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                            .....+...+.++.+||.+||..||.+|||+.|+++.
T Consensus       236 ------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  272 (327)
T 3lzb_A          236 ------ERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             ------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------CCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                  0112234567789999999999999999999999973

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=5.1e-43  Score=350.72  Aligned_cols=250  Identities=23%  Similarity=0.365  Sum_probs=202.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..++|.+.+.||+|+||.||+|.+.     .+++.||||++....  ...+.+.+|+++++++      .||||+++++
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~   93 (314)
T 2ivs_A           20 FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQV------NHPHVIKLYG   93 (314)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTC------CCTTBCCEEE
T ss_pred             cchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhC------CCCceeeEEE
Confidence            34689999999999999999999873     456899999987643  2346678899999988      7889999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc----------------------CCCCHHHHHHHHHHHHHHHHHHHhh
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY----------------------RGVPLHMVKEICFHILVGLDHLHRE  168 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~----------------------~~l~~~~~~~i~~qll~aL~~LH~~  168 (530)
                      ++.    .....++||||+ +++|.+++.....                      ..+++..+..++.||+.||+|||++
T Consensus        94 ~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  169 (314)
T 2ivs_A           94 ACS----QDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM  169 (314)
T ss_dssp             EEC----SSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEe----cCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC
Confidence            998    446799999999 7999999976432                      2388999999999999999999997


Q ss_pred             CCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCC
Q 045988          169 LSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSS  248 (530)
Q Consensus       169 ~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (530)
                       ||+||||||+|||++.                                                               
T Consensus       170 -~ivH~dikp~NIli~~---------------------------------------------------------------  185 (314)
T 2ivs_A          170 -KLVHRDLAARNILVAE---------------------------------------------------------------  185 (314)
T ss_dssp             -TEECCCCSGGGEEEET---------------------------------------------------------------
T ss_pred             -CCcccccchheEEEcC---------------------------------------------------------------
Confidence             9999999999999965                                                               


Q ss_pred             CCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCC
Q 045988          249 PDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTND  323 (530)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~  323 (530)
                                                                           ++.++|+|||++......     ....
T Consensus       186 -----------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~  212 (314)
T 2ivs_A          186 -----------------------------------------------------GRKMKISDFGLSRDVYEEDSYVKRSQG  212 (314)
T ss_dssp             -----------------------------------------------------TTEEEECCCTTCEECTTTSCEECSSCC
T ss_pred             -----------------------------------------------------CCCEEEccccccccccccccceeccCC
Confidence                                                                 457999999999754321     2344


Q ss_pred             CCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccc
Q 045988          324 IQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDF  402 (530)
Q Consensus       324 ~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  402 (530)
                      .+|+.|+|||++.+..++.++|||||||++|+|++ |..||.+...      ......+..  +                
T Consensus       213 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~------~~~~~~~~~--~----------------  268 (314)
T 2ivs_A          213 RIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP------ERLFNLLKT--G----------------  268 (314)
T ss_dssp             CSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG------GGHHHHHHT--T----------------
T ss_pred             CCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH------HHHHHHhhc--C----------------
Confidence            67889999999998889999999999999999999 9999965431      111111100  0                


Q ss_pred             ccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          403 FNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                             .....+...++.+.+||.+||..||.+|||+.+++++
T Consensus       269 -----------------------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~  305 (314)
T 2ivs_A          269 -----------------------HRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKD  305 (314)
T ss_dssp             -----------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------CcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                   0112334567889999999999999999999999875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.5e-42  Score=365.46  Aligned_cols=248  Identities=22%  Similarity=0.300  Sum_probs=202.7

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+..++|++.++||+|+||.||+|.+.  ++.||||+++... ..+.+.+|+.+|+++      .||||+++++++... 
T Consensus       189 ~i~~~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~-~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~-  258 (450)
T 1k9a_A          189 ALNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-TAQAFLAEASVMTQL------RHSNLVQLLGVIVEE-  258 (450)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSCT-TSHHHHHHHHHHHTC------CCTTBCCEEEEEECT-
T ss_pred             ccChHHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCch-HHHHHHHHHHHHHhc------cCCCEEEEEEEEEcC-
Confidence            455689999999999999999999764  7899999998754 467889999999999      788999999998742 


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ...+||||||| +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus       259 --~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~Nill~~-----------  324 (450)
T 1k9a_A          259 --KGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVSE-----------  324 (450)
T ss_dssp             --TSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECT-----------
T ss_pred             --CCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCHhhEEECC-----------
Confidence              34799999999 88999999866555589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (450)
T 1k9a_A          325 --------------------------------------------------------------------------------  324 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                               ++.+||+|||++...........+++.|+|||++.+..++.++|||||||++|+|
T Consensus       325 -------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el  379 (450)
T 1k9a_A          325 -------------------------DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEI  379 (450)
T ss_dssp             -------------------------TSCEEECCCTTCEECC------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHH
T ss_pred             -------------------------CCCEEEeeCCCcccccccccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHH
Confidence                                     4579999999997654444445678999999999999999999999999999999


Q ss_pred             Hh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          357 AT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       357 lt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      ++ |..||......      +....+..  |                                       .....+..++
T Consensus       380 ~t~g~~P~~~~~~~------~~~~~i~~--~---------------------------------------~~~~~p~~~~  412 (450)
T 1k9a_A          380 YSFGRVPYPRIPLK------DVVPRVEK--G---------------------------------------YKMDAPDGCP  412 (450)
T ss_dssp             HTTTCCSSTTSCTT------THHHHHHT--T---------------------------------------CCCCCCTTCC
T ss_pred             HhCCCCCCCCCCHH------HHHHHHHc--C---------------------------------------CCCCCCCcCC
Confidence            98 99999754321      11111110  0                                       0112344567


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +.+.+||.+||..||.+|||+.+++.
T Consensus       413 ~~l~~li~~cl~~dp~~Rpt~~~l~~  438 (450)
T 1k9a_A          413 PAVYDVMKNCWHLDAATRPTFLQLRE  438 (450)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            89999999999999999999999875

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-42  Score=344.81  Aligned_cols=254  Identities=25%  Similarity=0.382  Sum_probs=194.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|++.+.||+|+||+||+|.+  .++.||||++.... ....+.+|+++|+++      .||||+++++++.     
T Consensus         6 ~~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~-~~~~~~~E~~~l~~l------~hp~iv~~~~~~~-----   71 (307)
T 2eva_A            6 DYKEIEVEEVVGRGAFGVVCKAKW--RAKDVAIKQIESES-ERKAFIVELRQLSRV------NHPNIVKLYGACL-----   71 (307)
T ss_dssp             CGGGEEEEEEEECCSSSEEEEEEE--TTEEEEEEECSSTT-HHHHHHHHHHHHHHC------CCTTBCCEEEBCT-----
T ss_pred             CHhHeeeeeEeecCCCceEEEEEE--CCeeEEEEEecChh-HHHHHHHHHHHHhcC------CCCCcCeEEEEEc-----
Confidence            457899999999999999999976  47899999987543 356788999999999      7889999999887     


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHh---hCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADY-RGVPLHMVKEICFHILVGLDHLHR---ELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~-~~l~~~~~~~i~~qll~aL~~LH~---~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                       +..|+||||+ +++|.+++..... ..++...+..++.||+.||+|||+   + ||+||||||+|||++..        
T Consensus        72 -~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~-~ivH~dlkp~NIll~~~--------  141 (307)
T 2eva_A           72 -NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPK-ALIHRDLKPPNLLLVAG--------  141 (307)
T ss_dssp             -TTTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSS-CCCCCCCSGGGEEEETT--------
T ss_pred             -CCcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCC-CeecCCCChhHEEEeCC--------
Confidence             2479999999 8899999974332 237889999999999999999998   7 99999999999999541        


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (307)
T 2eva_A          142 --------------------------------------------------------------------------------  141 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                                 ...+||+|||++...........||+.|+|||++.+..++.++|||||||++|
T Consensus       142 ---------------------------~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~  194 (307)
T 2eva_A          142 ---------------------------GTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILW  194 (307)
T ss_dssp             ---------------------------TTEEEECCCCC------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHH
T ss_pred             ---------------------------CCEEEEcccccccccccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHH
Confidence                                       12379999999977655556668999999999999989999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|..||.....     .  ....+......                                      .........
T Consensus       195 el~~g~~p~~~~~~-----~--~~~~~~~~~~~--------------------------------------~~~~~~~~~  229 (307)
T 2eva_A          195 EVITRRKPFDEIGG-----P--AFRIMWAVHNG--------------------------------------TRPPLIKNL  229 (307)
T ss_dssp             HHHHTCCTTTTTCS-----S--HHHHHHHHHTT--------------------------------------CCCCCBTTC
T ss_pred             HHHHCCCCchhhCc-----c--HHHHHHHHhcC--------------------------------------CCCCccccc
Confidence            99999999964321     1  11111111000                                      001122345


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhc-----CCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLT-----HPWINVGP  469 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~-----hp~f~~~~  469 (530)
                      +..+.+||.+||..||.+|||+.++++     ..+|....
T Consensus       230 ~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~~  269 (307)
T 2eva_A          230 PKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGAD  269 (307)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCTT
T ss_pred             CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCCC
Confidence            678999999999999999999999998     45665443

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=3e-43  Score=355.13  Aligned_cols=269  Identities=22%  Similarity=0.254  Sum_probs=208.2

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEE----eCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAW----DTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~----~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      .+++.|..++|++.++||+|+||.||+|+    +..+++.||||++.... ...+.+.+|+++++++      .||||++
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~   88 (327)
T 3lxl_A           15 QDPTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKAL------HSDFIVK   88 (327)
T ss_dssp             --CCBCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTC------CCTTBCC
T ss_pred             ChhhhhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhc------CCCceeE
Confidence            67788888999999999999999999998    56789999999987653 3345688999999999      7888999


Q ss_pred             ecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      +++++...  ....+|+||||+ +++|.+++.... ..+++..+..|+.||+.||+|||++ ||+||||||+|||++.  
T Consensus        89 ~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dikp~NIl~~~--  162 (327)
T 3lxl_A           89 YRGVSYGP--GRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSR-RCVHRDLAARNILVES--  162 (327)
T ss_dssp             EEEEEECS--SSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE--
T ss_pred             EEEEEecC--CCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCChhhEEECC--
Confidence            99998754  457899999999 899999997543 2499999999999999999999997 9999999999999966  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (327)
T 3lxl_A          163 --------------------------------------------------------------------------------  162 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcCCCCC
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                        ++.++|+|||++.....      ......||+.|+|||++.+..++
T Consensus       163 ----------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  208 (327)
T 3lxl_A          163 ----------------------------------EAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFS  208 (327)
T ss_dssp             ----------------------------------TTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEE
T ss_pred             ----------------------------------CCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCC
Confidence                                              56799999999975432      23445688899999999988899


Q ss_pred             CcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCch
Q 045988          342 TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       342 ~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      .++|||||||++|+|++|..||....        .   ...........               ......        ..
T Consensus       209 ~~~Di~slG~il~~ll~g~~p~~~~~--------~---~~~~~~~~~~~---------------~~~~~~--------~~  254 (327)
T 3lxl_A          209 RQSDVWSFGVVLYELFTYCDKSCSPS--------A---EFLRMMGCERD---------------VPALSR--------LL  254 (327)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCGGGSHH--------H---HHHHHCC-------------------CCHHHH--------HH
T ss_pred             hHHhHHHHHHHHHHHHhCCCCCcccc--------c---hhhhhcccccc---------------cccHHH--------HH
Confidence            99999999999999999999995321        0   00000000000               000000        00


Q ss_pred             hhh--hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          422 KVL--IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       422 ~~~--~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ...  ......+...++.+.+||.+||..||.+|||+.|++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          255 ELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            000  01123345667899999999999999999999999654

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=2.3e-42  Score=345.82  Aligned_cols=252  Identities=24%  Similarity=0.338  Sum_probs=203.2

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEe-----CCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWD-----TQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~-----~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..++|.+.+.||+|+||+||+|++     ..+++.||||+++...  ...+.+.+|+.+++++.     .||||+++++
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~i~~~~~   94 (313)
T 1t46_A           20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-----NHMNIVNLLG   94 (313)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEE
T ss_pred             cChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcc-----cCCCeeeEEE
Confidence            4468999999999999999999984     4578999999987653  23467889999999994     6888999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccC----------------CCCHHHHHHHHHHHHHHHHHHHhhCCceec
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYR----------------GVPLHMVKEICFHILVGLDHLHRELSIIHT  174 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~----------------~l~~~~~~~i~~qll~aL~~LH~~~gIvHr  174 (530)
                      ++.    .....++||||+ +++|.+++......                .+++..+..++.||+.||+|||++ ||+||
T Consensus        95 ~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~  169 (313)
T 1t46_A           95 ACT----IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK-NCIHR  169 (313)
T ss_dssp             EEC----SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCS
T ss_pred             EEe----cCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC-CeecC
Confidence            998    446789999999 88999999764421                489999999999999999999997 99999


Q ss_pred             cCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCC
Q 045988          175 DLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSV  254 (530)
Q Consensus       175 DIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (530)
                      ||||+|||++.                                                                     
T Consensus       170 dlkp~Nil~~~---------------------------------------------------------------------  180 (313)
T 1t46_A          170 DLAARNILLTH---------------------------------------------------------------------  180 (313)
T ss_dssp             CCSGGGEEEET---------------------------------------------------------------------
T ss_pred             CCccceEEEcC---------------------------------------------------------------------
Confidence            99999999965                                                                     


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCc
Q 045988          255 DAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQY  329 (530)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y  329 (530)
                                                                     ++.++|+|||++......     .....||+.|
T Consensus       181 -----------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y  213 (313)
T 1t46_A          181 -----------------------------------------------GRITKICDFGLARDIKNDSNYVVKGNARLPVKW  213 (313)
T ss_dssp             -----------------------------------------------TTEEEECCCGGGSCTTSCTTSEECSSSEECGGG
T ss_pred             -----------------------------------------------CCCEEEccccccccccccccceeccCCCCccee
Confidence                                                           467999999999754332     2334567889


Q ss_pred             cCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCc
Q 045988          330 RCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD  408 (530)
Q Consensus       330 ~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  408 (530)
                      +|||++.+..++.++|||||||++|+|++ |..||.+..      ....+..+.....                      
T Consensus       214 ~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~~~~~~~----------------------  265 (313)
T 1t46_A          214 MAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP------VDSKFYKMIKEGF----------------------  265 (313)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC------SSHHHHHHHHHTC----------------------
T ss_pred             eChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCccc------chhHHHHHhccCC----------------------
Confidence            99999998899999999999999999998 999996543      1112211111100                      


Q ss_pred             cccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          409 LRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                        ....+...+..+.+||.+||..||.+|||+.|++++
T Consensus       266 ------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  301 (313)
T 1t46_A          266 ------------------RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQL  301 (313)
T ss_dssp             ------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------CCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHH
Confidence                              011223456789999999999999999999999974

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=2e-43  Score=349.60  Aligned_cols=254  Identities=19%  Similarity=0.312  Sum_probs=198.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCC-------eEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTS-------HYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~-------~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      +..++|.+.+.||+|+||+||+|++..++       ..||+|++.... ...+.+.+|+.+++++      .||||++++
T Consensus         5 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~   78 (289)
T 4fvq_A            5 IRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL------SHKHLVLNY   78 (289)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTS------CCTTBCCEE
T ss_pred             echhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhC------CCCCEeEEE
Confidence            34689999999999999999999988876       579999986543 4456788999999999      788999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      +++..    ....++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.....
T Consensus        79 ~~~~~----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~~~~~~  152 (289)
T 4fvq_A           79 GVCVC----GDENILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHFLEEN-TLIHGNVCAKNILLIREEDR  152 (289)
T ss_dssp             EEECC----TTCCEEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEEECCBG
T ss_pred             EEEEe----CCCCEEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhhC-CeECCCcCcceEEEecCCcc
Confidence            99984    46789999999 789999997543 3389999999999999999999997 99999999999999762100


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                      .                                                                               
T Consensus       153 ~-------------------------------------------------------------------------------  153 (289)
T 4fvq_A          153 K-------------------------------------------------------------------------------  153 (289)
T ss_dssp             G-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC-CCCCCcchhHH
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG-SKYSTPADLWS  348 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWS  348 (530)
                                                   ......++|+|||++...... ....||+.|+|||++.+ ..++.++||||
T Consensus       154 -----------------------------~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~Diws  203 (289)
T 4fvq_A          154 -----------------------------TGNPPFIKLSDPGISITVLPK-DILQERIPWVPPECIENPKNLNLATDKWS  203 (289)
T ss_dssp             -----------------------------GTBCCEEEECCCCSCTTTSCH-HHHHHTTTTSCHHHHHCGGGCCHHHHHHH
T ss_pred             -----------------------------ccccceeeeccCcccccccCc-cccCCcCcccCHHHhCCCCCCCchhHHHH
Confidence                                         000234999999998654322 22357889999999987 66999999999


Q ss_pred             HHHHHHHHHhCC-CCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          349 FACICFELATGD-VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       349 lG~il~elltG~-~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||++|+|++|. +||....       ......+..                                          ..
T Consensus       204 lG~il~el~~g~~~~~~~~~-------~~~~~~~~~------------------------------------------~~  234 (289)
T 4fvq_A          204 FGTTLWEICSGGDKPLSALD-------SQRKLQFYE------------------------------------------DR  234 (289)
T ss_dssp             HHHHHHHHHTTTCCTTTTSC-------HHHHHHHHH------------------------------------------TT
T ss_pred             HHHHHHHHHcCCCCCccccc-------hHHHHHHhh------------------------------------------cc
Confidence            999999999955 5553211       111111111                                          11


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..++...+.++.+||.+||+.||.+|||+.|+++|
T Consensus       235 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  269 (289)
T 4fvq_A          235 HQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRD  269 (289)
T ss_dssp             CCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            12233345678999999999999999999999986

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=8.3e-43  Score=371.67  Aligned_cols=249  Identities=21%  Similarity=0.313  Sum_probs=207.9

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +...+|++.++||+|+||.||+|.+..++..||||+++......+.+.+|+.+|++|      .|||||++++++.    
T Consensus       217 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hpniv~l~~~~~----  286 (495)
T 1opk_A          217 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLVQLLGVCT----  286 (495)
T ss_dssp             CCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHC------CCTTBCCEEEEEC----
T ss_pred             cCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhc------CCCCEeeEEEEEe----
Confidence            345789999999999999999999999999999999987766678899999999999      7889999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ....+||||||| +++|.+++.......+++..+..|+.||+.||+|||++ |||||||||+||||+.            
T Consensus       287 ~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivHrDlkp~NIll~~------------  353 (495)
T 1opk_A          287 REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-NFIHRNLAARNCLVGE------------  353 (495)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECG------------
T ss_pred             cCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChhhEEECC------------
Confidence            446799999999 89999999865556699999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       354 --------------------------------------------------------------------------------  353 (495)
T 1opk_A          354 --------------------------------------------------------------------------------  353 (495)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                              ++.+||+|||++......    .....+|..|+|||++.+..|+.++|||||||++
T Consensus       354 ------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l  409 (495)
T 1opk_A          354 ------------------------NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLL  409 (495)
T ss_dssp             ------------------------GGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHH
T ss_pred             ------------------------CCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHH
Confidence                                    467999999999764322    2334567789999999988899999999999999


Q ss_pred             HHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |+|++ |..||.+..      .......+...                                         .....+.
T Consensus       410 ~el~t~g~~p~~~~~------~~~~~~~~~~~-----------------------------------------~~~~~~~  442 (495)
T 1opk_A          410 WEIATYGMSPYPGID------LSQVYELLEKD-----------------------------------------YRMERPE  442 (495)
T ss_dssp             HHHHTTSCCSSTTCC------GGGHHHHHHTT-----------------------------------------CCCCCCT
T ss_pred             HHHHhCCCCCCCCCC------HHHHHHHHHcC-----------------------------------------CCCCCCC
Confidence            99999 999996543      11111111000                                         0112334


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+++.+.+||.+||+.||.+|||+.++++
T Consensus       443 ~~~~~l~~li~~cl~~dP~~RPs~~el~~  471 (495)
T 1opk_A          443 GCPEKVYELMRACWQWNPSDRPSFAEIHQ  471 (495)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHcCcChhHCcCHHHHHH
Confidence            56788999999999999999999999987

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=7.4e-43  Score=344.46  Aligned_cols=247  Identities=19%  Similarity=0.302  Sum_probs=191.0

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCC---CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ..++|++.+.||+|+||+||+|.+..+   +..||+|++....  ...+.+.+|+.+++++      .||||+++++++.
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~   86 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF------DHPHIVKLIGVIT   86 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC------CCTTBCCEEEEEC
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCccceEEEEEc
Confidence            368999999999999999999998654   5689999987532  3356678999999988      7889999999975


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .     ...|+||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        87 ~-----~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~--------  151 (281)
T 1mp8_A           87 E-----NPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESK-RFVHRDIAARNVLVSS--------  151 (281)
T ss_dssp             S-----SSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE--------
T ss_pred             c-----CccEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeecccccHHHEEECC--------
Confidence            2     4689999999 789999987532 3589999999999999999999997 9999999999999965        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (281)
T 1mp8_A          152 --------------------------------------------------------------------------------  151 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                  ++.+||+|||++......    .....+|+.|+|||++.+..++.++|||||
T Consensus       152 ----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  203 (281)
T 1mp8_A          152 ----------------------------NDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMF  203 (281)
T ss_dssp             ----------------------------TTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHH
T ss_pred             ----------------------------CCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHH
Confidence                                        457999999999754322    223456789999999998889999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          350 ACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       350 G~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      ||++|+|++ |.+||.+..      ..+.+..+...                                         ...
T Consensus       204 G~~l~ell~~g~~pf~~~~------~~~~~~~i~~~-----------------------------------------~~~  236 (281)
T 1mp8_A          204 GVCMWEILMHGVKPFQGVK------NNDVIGRIENG-----------------------------------------ERL  236 (281)
T ss_dssp             HHHHHHHHTTSCCTTTTCC------GGGHHHHHHTT-----------------------------------------CCC
T ss_pred             HHHHHHHHhcCCCCCCcCC------HHHHHHHHHcC-----------------------------------------CCC
Confidence            999999996 999996543      22222221100                                         011


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..+...++.+.+||.+||..||.+|||+.|++++
T Consensus       237 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  270 (281)
T 1mp8_A          237 PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  270 (281)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            2334567889999999999999999999999874

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.9e-42  Score=338.37  Aligned_cols=247  Identities=19%  Similarity=0.345  Sum_probs=202.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|++.+.||+|+||.||+|.+. ++..||+|++.......+.+.+|+.+++++      .||||+++++++..    
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----   74 (267)
T 3t9t_A            6 DPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKL------SHPKLVQLYGVCLE----   74 (267)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTBCHHHHHHHHHHHHTC------CCTTBCCEEEEECS----
T ss_pred             chhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCCCHHHHHHHHHHHHhC------CCCCEeeEEEEEcc----
Confidence            4578999999999999999999986 678899999988766677889999999998      78899999999984    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ....++||||+ +++|.+++... ...+++..+..++.||+.||.|||++ ||+||||||+|||++.             
T Consensus        75 ~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nili~~-------------  139 (267)
T 3t9t_A           75 QAPICLVTEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEA-CVIHRDLAARNCLVGE-------------  139 (267)
T ss_dssp             SSSCEEEECCCTTCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCCGGGEEECG-------------
T ss_pred             CCCeEEEEeCCCCCcHHHHHhhC-cccCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCchheEEECC-------------
Confidence            46799999999 78999998753 24589999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (267)
T 3t9t_A          140 --------------------------------------------------------------------------------  139 (267)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                             +..++|+|||++.....    ......+|+.|+|||++.+..++.++|||||||++|
T Consensus       140 -----------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  196 (267)
T 3t9t_A          140 -----------------------NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMW  196 (267)
T ss_dssp             -----------------------GGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             -----------------------CCCEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHH
Confidence                                   45799999999975432    233456788999999999888999999999999999


Q ss_pred             HHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +|++ |.+||....      .......+..   ..                                      ....+..
T Consensus       197 ~l~~~g~~p~~~~~------~~~~~~~i~~---~~--------------------------------------~~~~~~~  229 (267)
T 3t9t_A          197 EVFSEGKIPYENRS------NSEVVEDIST---GF--------------------------------------RLYKPRL  229 (267)
T ss_dssp             HHHTTSCCTTTTCC------HHHHHHHHHT---TC--------------------------------------CCCCCTT
T ss_pred             HHhccCCCCCCCCC------HHHHHHHHhc---CC--------------------------------------cCCCCcc
Confidence            9999 899996432      1111111110   00                                      0112234


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      .+..+.+||.+||..||.+|||+.+++++
T Consensus       230 ~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (267)
T 3t9t_A          230 ASTHVYQIMNHCWRERPEDRPAFSRLLRQ  258 (267)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CcHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            56789999999999999999999999874

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=7.4e-43  Score=354.15  Aligned_cols=250  Identities=20%  Similarity=0.337  Sum_probs=201.3

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..++|++.+.||+|+||.||+|++.     .+++.||||+++...  .....+.+|+.+++++      .||||+++++
T Consensus        44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~  117 (343)
T 1luf_A           44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF------DNPNIVKLLG  117 (343)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC------CCTTBCCEEE
T ss_pred             ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhC------CCCCEEEEEE
Confidence            34689999999999999999999987     456999999987643  2346678999999999      7889999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc----------------------CCCCHHHHHHHHHHHHHHHHHHHhh
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY----------------------RGVPLHMVKEICFHILVGLDHLHRE  168 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~----------------------~~l~~~~~~~i~~qll~aL~~LH~~  168 (530)
                      ++.    .....|+||||+ +++|.+++.....                      ..+++..+..++.||+.||.|||++
T Consensus       118 ~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~  193 (343)
T 1luf_A          118 VCA----VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER  193 (343)
T ss_dssp             EEC----SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEc----cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            998    457899999999 8899999976421                      4589999999999999999999997


Q ss_pred             CCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCC
Q 045988          169 LSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSS  248 (530)
Q Consensus       169 ~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (530)
                       ||+||||||+|||++.                                                               
T Consensus       194 -~ivH~Dlkp~NIl~~~---------------------------------------------------------------  209 (343)
T 1luf_A          194 -KFVHRDLATRNCLVGE---------------------------------------------------------------  209 (343)
T ss_dssp             -TCCCSCCSGGGEEECG---------------------------------------------------------------
T ss_pred             -CeecCCCCcceEEECC---------------------------------------------------------------
Confidence             9999999999999955                                                               


Q ss_pred             CCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCC
Q 045988          249 PDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTND  323 (530)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~  323 (530)
                                                                           ++.+||+|||++.....     .....
T Consensus       210 -----------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~  236 (343)
T 1luf_A          210 -----------------------------------------------------NMVVKIADFGLSRNIYSADYYKADGND  236 (343)
T ss_dssp             -----------------------------------------------------GGCEEECCCSCHHHHTGGGCBC----C
T ss_pred             -----------------------------------------------------CCeEEEeecCCCcccccCccccccCCC
Confidence                                                                 46799999999965322     23345


Q ss_pred             CCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccc
Q 045988          324 IQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDF  402 (530)
Q Consensus       324 ~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  402 (530)
                      .||+.|+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+..  +.               
T Consensus       237 ~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~~~~~--~~---------------  293 (343)
T 1luf_A          237 AIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA------HEEVIYYVRD--GN---------------  293 (343)
T ss_dssp             CBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHHHHT--TC---------------
T ss_pred             cccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCC------hHHHHHHHhC--CC---------------
Confidence            67899999999998889999999999999999999 999996432      1111111100  00               


Q ss_pred             ccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          403 FNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                              ....+...+..+.+||.+||..||.+|||+.+++++
T Consensus       294 ------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~  329 (343)
T 1luf_A          294 ------------------------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRI  329 (343)
T ss_dssp             ------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------cCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHH
Confidence                                    012234556789999999999999999999999874

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-42  Score=351.85  Aligned_cols=254  Identities=22%  Similarity=0.322  Sum_probs=201.8

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEe-----CCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWD-----TQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~-----~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .+..++|.+.+.||+|+||.||+|.+     ..++..||||++....  ...+.+.+|+.+|+++.     .||||++++
T Consensus        41 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~  115 (344)
T 1rjb_A           41 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG-----SHENIVNLL  115 (344)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHC-----CCTTBCCEE
T ss_pred             ccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhc-----CCCCeeeEE
Confidence            34468999999999999999999997     3457899999987542  34567889999999994     688899999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc---------------------CCCCHHHHHHHHHHHHHHHHHHHhh
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY---------------------RGVPLHMVKEICFHILVGLDHLHRE  168 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~---------------------~~l~~~~~~~i~~qll~aL~~LH~~  168 (530)
                      +++..    ....|+||||+ +++|.+++.....                     ..+++..+..++.||+.||+|||++
T Consensus       116 ~~~~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~  191 (344)
T 1rjb_A          116 GACTL----SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK  191 (344)
T ss_dssp             EEECS----SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEee----CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99984    46799999999 8899999975432                     2378999999999999999999997


Q ss_pred             CCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCC
Q 045988          169 LSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSS  248 (530)
Q Consensus       169 ~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (530)
                       ||+||||||+|||++.                                                               
T Consensus       192 -~ivH~Dikp~NIll~~---------------------------------------------------------------  207 (344)
T 1rjb_A          192 -SCVHRDLAARNVLVTH---------------------------------------------------------------  207 (344)
T ss_dssp             -TEEETTCSGGGEEEET---------------------------------------------------------------
T ss_pred             -CcccCCCChhhEEEcC---------------------------------------------------------------
Confidence             9999999999999965                                                               


Q ss_pred             CCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCC
Q 045988          249 PDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTND  323 (530)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~  323 (530)
                                                                           ++.++|+|||++......     ....
T Consensus       208 -----------------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~  234 (344)
T 1rjb_A          208 -----------------------------------------------------GKVVKICDFGLARDIMSDSNYVVRGNA  234 (344)
T ss_dssp             -----------------------------------------------------TTEEEECCCGGGSCGGGCTTSEEETTE
T ss_pred             -----------------------------------------------------CCcEEeCCCccCcccccCccceeccCc
Confidence                                                                 467999999999754322     2334


Q ss_pred             CCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccc
Q 045988          324 IQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDF  402 (530)
Q Consensus       324 ~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  402 (530)
                      .||+.|+|||++.+..++.++|||||||++|+|++ |..||.+...      ...+..+... +                
T Consensus       235 ~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~------~~~~~~~~~~-~----------------  291 (344)
T 1rjb_A          235 RLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV------DANFYKLIQN-G----------------  291 (344)
T ss_dssp             EECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC------SHHHHHHHHT-T----------------
T ss_pred             cCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCc------HHHHHHHHhc-C----------------
Confidence            56889999999998899999999999999999998 9999965431      1111111110 0                


Q ss_pred             ccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCC
Q 045988          403 FNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHP  463 (530)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp  463 (530)
                                             .....+...++++.+||.+||..||.+|||+.++++|-
T Consensus       292 -----------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  329 (344)
T 1rjb_A          292 -----------------------FKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  329 (344)
T ss_dssp             -----------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -----------------------CCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence                                   00122334568899999999999999999999999874

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=2.5e-42  Score=346.27  Aligned_cols=256  Identities=24%  Similarity=0.327  Sum_probs=184.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccc--hHHHHHHHH-HHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY--TEAALDEIK-ILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~--~~~~~~Ei~-il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++.+.||+|+||.||+|.+..+|+.||||++......  ......|+. +++.+      .||||+++++++.   
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~i~~~~~~~~---   94 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSH------DCPYIVQCFGTFI---   94 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTT------TCTTBCCEEEEEE---
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhc------CCCceeeEEEEEe---
Confidence            47899999999999999999999999999999998765322  222333333 34444      7899999999998   


Q ss_pred             CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       .....|+||||+++.+..+... ....+++..+..++.||+.||.|||++.||+||||||+|||++.            
T Consensus        95 -~~~~~~lv~e~~~~~~~~l~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~------------  160 (318)
T 2dyl_A           95 -TNTDVFIAMELMGTCAEKLKKR-MQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDE------------  160 (318)
T ss_dssp             -CSSEEEEEECCCSEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECT------------
T ss_pred             -cCCcEEEEEeccCCcHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECC------------
Confidence             4578999999997766665543 34569999999999999999999998229999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (318)
T 2dyl_A          161 --------------------------------------------------------------------------------  160 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhc-----CCCCCCcchhHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLL-----GSKYSTPADLWSFA  350 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~-----~~~~~~~~DiWSlG  350 (530)
                                              ++.++|+|||++.....  ......||+.|+|||++.     +..++.++||||||
T Consensus       161 ------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG  216 (318)
T 2dyl_A          161 ------------------------RGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLG  216 (318)
T ss_dssp             ------------------------TSCEEECCCTTC--------------CCTTCCHHHHC--------CCTHHHHHHHH
T ss_pred             ------------------------CCCEEEEECCCchhccCCccccccCCCccccChhhcccccccccCCccccchhhHH
Confidence                                    45799999999965432  234457899999999995     45689999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|..||....     .....+..+..   ..+.                                    ....
T Consensus       217 ~il~~l~~g~~pf~~~~-----~~~~~~~~~~~---~~~~------------------------------------~~~~  252 (318)
T 2dyl_A          217 ISLVELATGQFPYKNCK-----TDFEVLTKVLQ---EEPP------------------------------------LLPG  252 (318)
T ss_dssp             HHHHHHHHSSCTTTTCC-----SHHHHHHHHHH---SCCC------------------------------------CCCS
T ss_pred             HHHHHHHhCCCCCCCCC-----ccHHHHHHHhc---cCCC------------------------------------CCCc
Confidence            99999999999996422     11222222111   0000                                    0011


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      ....++++.+||.+||..||.+|||+.++|+||||+.
T Consensus       253 ~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~  289 (318)
T 2dyl_A          253 HMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKR  289 (318)
T ss_dssp             SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHH
T ss_pred             cCCCCHHHHHHHHHHccCChhHCcCHHHHhhCHHHHh
Confidence            1235678999999999999999999999999999974

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=2.6e-42  Score=338.32  Aligned_cols=253  Identities=22%  Similarity=0.349  Sum_probs=190.6

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ..++|++.++||+|+||.||+|.+.  ++.||+|+++...     ...+.+.+|+.+++.+      .||||+++++++.
T Consensus         5 ~~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~   76 (271)
T 3dtc_A            5 DFAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAML------KHPNIIALRGVCL   76 (271)
T ss_dssp             CTTSEEEEEEEEEETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHC------CCTTBCCEEEEEC
T ss_pred             chhheeeeeeeccCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhc------CCCCEeeEEEEEe
Confidence            4579999999999999999999864  8999999987543     2246778899999999      7888999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC---ceeccCCCCcEEEeeccCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELS---IIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~g---IvHrDIKp~NILl~~~~~~~  190 (530)
                          .....++||||+ +++|.+++.   ...+++..+..++.||+.||+|||++ |   |+||||||+|||++......
T Consensus        77 ----~~~~~~lv~e~~~~~~L~~~~~---~~~~~~~~~~~i~~~l~~~l~~lH~~-~~~~i~H~dikp~Nil~~~~~~~~  148 (271)
T 3dtc_A           77 ----KEPNLCLVMEFARGGPLNRVLS---GKRIPPDILVNWAVQIARGMNYLHDE-AIVPIIHRDLKSSNILILQKVENG  148 (271)
T ss_dssp             ----CC--CEEEEECCTTEEHHHHHT---SSCCCHHHHHHHHHHHHHHHHHHHHS-SSSCCCCSCCSGGGEEESSCCSSS
T ss_pred             ----cCCceEEEEEcCCCCCHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHhC-CCCceeecCCchHHEEEecccccc
Confidence                446899999999 889988884   34599999999999999999999997 8   99999999999995421100


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                      .                                                                               
T Consensus       149 ~-------------------------------------------------------------------------------  149 (271)
T 3dtc_A          149 D-------------------------------------------------------------------------------  149 (271)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                   .....++|+|||++..... ......||+.|+|||++.+..++.++|||||
T Consensus       150 -----------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  200 (271)
T 3dtc_A          150 -----------------------------LSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSY  200 (271)
T ss_dssp             -----------------------------CSSCCEEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHH
T ss_pred             -----------------------------ccCcceEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHH
Confidence                                         0045799999999975432 2335678999999999999889999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|..||.+..      ....   .......                                     .....
T Consensus       201 G~~l~~l~~g~~p~~~~~------~~~~---~~~~~~~-------------------------------------~~~~~  234 (271)
T 3dtc_A          201 GVLLWELLTGEVPFRGID------GLAV---AYGVAMN-------------------------------------KLALP  234 (271)
T ss_dssp             HHHHHHHHHCCCTTTTSC------HHHH---HHHHHTS-------------------------------------CCCCC
T ss_pred             HHHHHHHHhCCCCCCCCC------HHHH---HHhhhcC-------------------------------------CCCCC
Confidence            999999999999996432      1111   1111000                                     00112


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      .+...++.+.+||.+||..||.+|||+.|+++|
T Consensus       235 ~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  267 (271)
T 3dtc_A          235 IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQ  267 (271)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHH
Confidence            334567889999999999999999999999975

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.7e-43  Score=361.72  Aligned_cols=248  Identities=21%  Similarity=0.347  Sum_probs=200.7

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      +..++|.+.++||+|+||.||+|.+..+++.||||+++...  .....+.+|+++|+++      .||||+++++++.  
T Consensus       111 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~--  182 (377)
T 3cbl_A          111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQY------SHPNIVRLIGVCT--  182 (377)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTC------CCTTBCCEEEEEC--
T ss_pred             EchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhC------CCCCEEEEEEEEe--
Confidence            45679999999999999999999999999999999987542  2235678899999988      7889999999998  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        ....+||||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.          
T Consensus       183 --~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~Nil~~~----------  248 (377)
T 3cbl_A          183 --QKQPIYIVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLESK-CCIHRDLAARNCLVTE----------  248 (377)
T ss_dssp             --SSSSCEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT----------
T ss_pred             --cCCCcEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CcCCcccCHHHEEEcC----------
Confidence              446799999999 899999997543 3489999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (377)
T 3cbl_A          249 --------------------------------------------------------------------------------  248 (377)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc-----CCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF-----TNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                ++.+||+|||++.......     ....+++.|+|||++.+..++.++||||||
T Consensus       249 --------------------------~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG  302 (377)
T 3cbl_A          249 --------------------------KNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFG  302 (377)
T ss_dssp             --------------------------TCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHH
T ss_pred             --------------------------CCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHH
Confidence                                      4579999999997543221     122346789999999988899999999999


Q ss_pred             HHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          351 CICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       351 ~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      |++|||++ |..||....       .......+.. +                                       ....
T Consensus       303 ~il~el~t~g~~p~~~~~-------~~~~~~~~~~-~---------------------------------------~~~~  335 (377)
T 3cbl_A          303 ILLWETFSLGASPYPNLS-------NQQTREFVEK-G---------------------------------------GRLP  335 (377)
T ss_dssp             HHHHHHHTTSCCSSTTSC-------HHHHHHHHHT-T---------------------------------------CCCC
T ss_pred             HHHHHHHhCCCCCCCCCC-------HHHHHHHHHc-C---------------------------------------CCCC
Confidence            99999998 999996432       1111111110 0                                       0112


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+...++.+.+||.+||+.||.+|||+.++++
T Consensus       336 ~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  367 (377)
T 3cbl_A          336 CPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQ  367 (377)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            33445678999999999999999999999985

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.4e-42  Score=343.93  Aligned_cols=252  Identities=23%  Similarity=0.320  Sum_probs=190.9

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----chHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----YTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      ..|..+  ++|++.+.||+|+||.||+|++..+++.||||++.....    ....+.+|+.+++++      .||||+++
T Consensus        28 ~~~~~~--~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~hp~iv~~   99 (309)
T 2h34_A           28 REGTQF--GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRL------QEPHVVPI   99 (309)
T ss_dssp             --------CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTC------CCTTBCCE
T ss_pred             CCCcEe--ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhc------CCCCeeEE
Confidence            445554  799999999999999999999999999999999876532    235678899999888      78899999


Q ss_pred             cceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccC
Q 045988          110 LDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID  188 (530)
Q Consensus       110 ~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~  188 (530)
                      ++++..    ....|+||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.   
T Consensus       100 ~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dlkp~NIl~~~---  169 (309)
T 2h34_A          100 HDFGEI----DGQLYVDMRLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAHAA-GATHRDVKPENILVSA---  169 (309)
T ss_dssp             EEEEEE----TTEEEEEEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT---
T ss_pred             EEEEee----CCeEEEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-cCCcCCCChHHEEEcC---
Confidence            999984    47899999999 78999999754  3599999999999999999999997 9999999999999954   


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (309)
T 2h34_A          170 --------------------------------------------------------------------------------  169 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcc
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPA  344 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~  344 (530)
                                                       ++.++|+|||++......    .....||+.|+|||++.+..++.++
T Consensus       170 ---------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  216 (309)
T 2h34_A          170 ---------------------------------DDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRA  216 (309)
T ss_dssp             ---------------------------------TSCEEECSCCC----------------CCGGGCCGGGTCC----CCC
T ss_pred             ---------------------------------CCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchH
Confidence                                             456999999998654322    3355789999999999998999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      |||||||++|+|++|..||....       ...+....  ....+.                                  
T Consensus       217 Di~slG~il~~l~~g~~pf~~~~-------~~~~~~~~--~~~~~~----------------------------------  253 (309)
T 2h34_A          217 DIYALTCVLYECLTGSPPYQGDQ-------LSVMGAHI--NQAIPR----------------------------------  253 (309)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCSCH-------HHHHHHHH--HSCCCC----------------------------------
T ss_pred             hHHHHHHHHHHHHHCCCCCCCch-------HHHHHHHh--ccCCCC----------------------------------
Confidence            99999999999999999996321       11111111  110000                                  


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCc-CHHHHhc
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRP-TAAQCLT  461 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rp-ta~elL~  461 (530)
                        ....+...+..+.+||.+||..||.+|| +++++++
T Consensus       254 --~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          254 --PSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSA  289 (309)
T ss_dssp             --GGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred             --ccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHH
Confidence              0112345677899999999999999999 7887775

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=350.09  Aligned_cols=252  Identities=22%  Similarity=0.308  Sum_probs=186.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec---
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS---  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~---  116 (530)
                      ..+|++.++||+|+||.||+|++..+++.||||++.... .....+.+|+.+++++.     +||||+++++++...   
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----~h~~iv~~~~~~~~~~~~  101 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLS-----GHPNIVQFCSAASIGKEE  101 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHT-----TSTTBCCEEEEEEECTTT
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhc-----cCCChhhccccccccccc
Confidence            458999999999999999999999999999999875443 33566789999999994     489999999998532   


Q ss_pred             -CCCCcEEEEEEeccCcCHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCC--ceeccCCCCcEEEeeccCCCCC
Q 045988          117 -GPNGQHVCMVFEYLGENLLTLIKYAD-YRGVPLHMVKEICFHILVGLDHLHRELS--IIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       117 -~~~~~~~~lVmE~~~~~L~~~i~~~~-~~~l~~~~~~~i~~qll~aL~~LH~~~g--IvHrDIKp~NILl~~~~~~~~~  192 (530)
                       ......+++||||++++|.+++.... ...+++..+..++.||+.||+|||++ |  |+||||||+|||++.       
T Consensus       102 ~~~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~~~ivH~Dikp~NIl~~~-------  173 (337)
T 3ll6_A          102 SDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ-KPPIIHRDLKVENLLLSN-------  173 (337)
T ss_dssp             STTSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCCCCCGGGCEECT-------
T ss_pred             cccCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC-CCCEEEccCCcccEEECC-------
Confidence             12456799999999999999887533 34599999999999999999999997 9  999999999999954       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (337)
T 3ll6_A          174 --------------------------------------------------------------------------------  173 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---------------cCCCCCCCCccCChhh--
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---------------FTNDIQTRQYRCPEVL--  335 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---------------~~~~~gt~~y~aPE~l--  335 (530)
                                                   ++.+||+|||++......               .....||+.|+|||++  
T Consensus       174 -----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  224 (337)
T 3ll6_A          174 -----------------------------QGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDL  224 (337)
T ss_dssp             -----------------------------TSCEEBCCCTTCBCCSSCC-------------------------------C
T ss_pred             -----------------------------CCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhc
Confidence                                         457999999999754321               1144689999999998  


Q ss_pred             -cCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchh
Q 045988          336 -LGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR  414 (530)
Q Consensus       336 -~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  414 (530)
                       .+..++.++|||||||++|+|++|..||.......         .+....                             
T Consensus       225 ~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~---------~~~~~~-----------------------------  266 (337)
T 3ll6_A          225 YSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR---------IVNGKY-----------------------------  266 (337)
T ss_dssp             CTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------------------C-----------------------------
T ss_pred             cccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH---------hhcCcc-----------------------------
Confidence             46678999999999999999999999995322100         000000                             


Q ss_pred             cccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCC
Q 045988          415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW  464 (530)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~  464 (530)
                                  ........+..+.+||.+||+.||.+|||+.|+++|-+
T Consensus       267 ------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~  304 (337)
T 3ll6_A          267 ------------SIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQ  304 (337)
T ss_dssp             ------------CCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred             ------------cCCcccccchHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence                        00111233456889999999999999999999999854

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-42  Score=350.35  Aligned_cols=278  Identities=19%  Similarity=0.289  Sum_probs=206.1

Q ss_pred             CCCCCCCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCC
Q 045988           21 GTEDYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDP  100 (530)
Q Consensus        21 ~~~~~~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~  100 (530)
                      ....+..+...|+..++.+ .++|++.++||+|+||.||+|.+.  ++.||||++....  .....+|.+++..+.    
T Consensus        17 ~~~~~~~~~~~~~~~~~~~-~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~--~~~~~~e~~~~~~~~----   87 (337)
T 3mdy_A           17 QSQSSGSGSGLPLLVQRTI-AKQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTTE--EASWFRETEIYQTVL----   87 (337)
T ss_dssp             HHHHHCSCSSSCHHHHTTH-HHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGGG--HHHHHHHHHHHTSTT----
T ss_pred             ccccCCCCCCCCccccccc-ccceEEEeEeecCCCeEEEEEEEC--CceEEEEEEeccc--cchhhhHHHHHHHHh----
Confidence            3344566777788888877 679999999999999999999864  8999999986543  344555666655442    


Q ss_pred             CCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC-------Cce
Q 045988          101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHREL-------SII  172 (530)
Q Consensus       101 ~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~-------gIv  172 (530)
                      ..||||+++++++.........+|+||||+ +++|.+++..   ..+++..+..++.||+.||+|||++.       ||+
T Consensus        88 ~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~iv  164 (337)
T 3mdy_A           88 MRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIA  164 (337)
T ss_dssp             CCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEE
T ss_pred             hcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEE
Confidence            279999999999986543447899999999 8899999964   34999999999999999999999731       999


Q ss_pred             eccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCC
Q 045988          173 HTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHT  252 (530)
Q Consensus       173 HrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (530)
                      ||||||+|||++.                                                                   
T Consensus       165 H~Dikp~Nill~~-------------------------------------------------------------------  177 (337)
T 3mdy_A          165 HRDLKSKNILVKK-------------------------------------------------------------------  177 (337)
T ss_dssp             CSCCCGGGEEECT-------------------------------------------------------------------
T ss_pred             ecccchHHEEECC-------------------------------------------------------------------
Confidence            9999999999954                                                                   


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCC
Q 045988          253 SVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQ  325 (530)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~g  325 (530)
                                                                       ++.+||+|||++......       ....+|
T Consensus       178 -------------------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g  208 (337)
T 3mdy_A          178 -------------------------------------------------NGTCCIADLGLAVKFISDTNEVDIPPNTRVG  208 (337)
T ss_dssp             -------------------------------------------------TSCEEECCCTTCEECC---------CCSSCS
T ss_pred             -------------------------------------------------CCCEEEEeCCCceeeccccccccCCCCCCcc
Confidence                                                             457999999999653222       234579


Q ss_pred             CCCccCChhhcCCCCCCc------chhHHHHHHHHHHHhC----------CCCCCCCCCCCCCCChHHHHHHHHHhCCCc
Q 045988          326 TRQYRCPEVLLGSKYSTP------ADLWSFACICFELATG----------DVLFDPHSGDNYDRDEDHLALMMELLGMMP  389 (530)
Q Consensus       326 t~~y~aPE~l~~~~~~~~------~DiWSlG~il~elltG----------~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p  389 (530)
                      |+.|+|||++.+..+...      +|||||||++|+|++|          ..||.......  .....+.......+..+
T Consensus       209 t~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~  286 (337)
T 3mdy_A          209 TKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSD--PSYEDMREIVCIKKLRP  286 (337)
T ss_dssp             CGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS--CCHHHHHHHHTTSCCCC
T ss_pred             CcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCC--CchhhhHHHHhhhccCc
Confidence            999999999988777665      9999999999999999          45553322111  01111111111000000


Q ss_pred             hhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          390 RKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      .                             ..     ........++.+.+||.+||+.||.+|||+.|+++|
T Consensus       287 ~-----------------------------~~-----~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          287 S-----------------------------FP-----NRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             C-----------------------------CC-----GGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             c-----------------------------cc-----ccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence            0                             00     000112557789999999999999999999999985

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=2e-42  Score=346.71  Aligned_cols=252  Identities=25%  Similarity=0.354  Sum_probs=202.1

Q ss_pred             eCCCEEEEEEeccccceEEEEEEe-----CCCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWD-----TQTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~-----~~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..++|++.+.||+|+||+||+|.+     ..+++.||||+++....  ....+.+|+.+++++.     +||||++++++
T Consensus        25 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~~~   99 (316)
T 2xir_A           25 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVVNLLGA   99 (316)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEEE
T ss_pred             chhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcc-----cCCCeeeEEEE
Confidence            468999999999999999999984     45679999999876532  3456789999999995     58999999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLK  177 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIK  177 (530)
                      +...   +..+++||||+ +++|.+++.....              ..+++..+..++.||+.||.|||++ ||+|||||
T Consensus       100 ~~~~---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dik  175 (316)
T 2xir_A          100 CTKP---GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLA  175 (316)
T ss_dssp             ECCT---TSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT-TCCCSCCS
T ss_pred             EecC---CCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC-CcccccCc
Confidence            8753   35689999999 7899999975432              1278999999999999999999997 99999999


Q ss_pred             CCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCC
Q 045988          178 PENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAE  257 (530)
Q Consensus       178 p~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (530)
                      |+|||++.                                                                        
T Consensus       176 p~Nil~~~------------------------------------------------------------------------  183 (316)
T 2xir_A          176 ARNILLSE------------------------------------------------------------------------  183 (316)
T ss_dssp             GGGEEECG------------------------------------------------------------------------
T ss_pred             cceEEECC------------------------------------------------------------------------
Confidence            99999954                                                                        


Q ss_pred             CCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCC
Q 045988          258 PNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCP  332 (530)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aP  332 (530)
                                                                  ++.++|+|||++......     .....||+.|+||
T Consensus       184 --------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  219 (316)
T 2xir_A          184 --------------------------------------------KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  219 (316)
T ss_dssp             --------------------------------------------GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCH
T ss_pred             --------------------------------------------CCCEEECCCccccccccCccceeccCCCcceeecCc
Confidence                                                        467999999999754322     2334578899999


Q ss_pred             hhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcccc
Q 045988          333 EVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH  411 (530)
Q Consensus       333 E~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  411 (530)
                      |++.+..++.++|||||||++|+|++ |..||.+...     .......+...                           
T Consensus       220 E~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~-----~~~~~~~~~~~---------------------------  267 (316)
T 2xir_A          220 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-----DEEFCRRLKEG---------------------------  267 (316)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC-----SHHHHHHHHHT---------------------------
T ss_pred             hhhccccccchhHHHHHHHHHHHHHhCCCCCCcccch-----hHHHHHHhccC---------------------------
Confidence            99999899999999999999999998 9999965431     11111111110                           


Q ss_pred             chhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                    .....+...++.+.+||.+||..||.+|||+.|+++|
T Consensus       268 --------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  304 (316)
T 2xir_A          268 --------------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  304 (316)
T ss_dssp             --------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------ccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                          0012233456789999999999999999999999986

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=9e-42  Score=344.97  Aligned_cols=252  Identities=21%  Similarity=0.295  Sum_probs=202.3

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCC-----eEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTS-----HYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~-----~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..++|.+.+.||+|+||+||+|.+..++     +.||+|++....  ...+.+.+|+.+++++.     .||||+++++
T Consensus        43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~  117 (333)
T 2i1m_A           43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLG-----QHENIVNLLG  117 (333)
T ss_dssp             CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEE
T ss_pred             CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhc-----CCCCeeeEEE
Confidence            44689999999999999999999987765     489999987653  23566889999999994     5888999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhc------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                      ++.    ....+|+||||+ +++|.+++....            ...+++..+..++.||+.||+|||++ ||+||||||
T Consensus       118 ~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp  192 (333)
T 2i1m_A          118 ACT----HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK-NCIHRDVAA  192 (333)
T ss_dssp             EEC----SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSG
T ss_pred             EEe----cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC-CcccCCccc
Confidence            998    446799999999 789999987543            23489999999999999999999997 999999999


Q ss_pred             CcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 045988          179 ENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEP  258 (530)
Q Consensus       179 ~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (530)
                      +|||++.                                                                         
T Consensus       193 ~NIl~~~-------------------------------------------------------------------------  199 (333)
T 2i1m_A          193 RNVLLTN-------------------------------------------------------------------------  199 (333)
T ss_dssp             GGCEEEG-------------------------------------------------------------------------
T ss_pred             ceEEECC-------------------------------------------------------------------------
Confidence            9999965                                                                         


Q ss_pred             CCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCCh
Q 045988          259 NGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPE  333 (530)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE  333 (530)
                                                                 ++.++|+|||++......     .....||+.|+|||
T Consensus       200 -------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  236 (333)
T 2i1m_A          200 -------------------------------------------GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPE  236 (333)
T ss_dssp             -------------------------------------------GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHH
T ss_pred             -------------------------------------------CCeEEECccccccccccccceeecCCCCCCccccCHH
Confidence                                                       467999999999754322     23345688999999


Q ss_pred             hhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccc
Q 045988          334 VLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI  412 (530)
Q Consensus       334 ~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  412 (530)
                      ++.+..++.++|||||||++|+|++ |..||.+..      ....+..+....-                          
T Consensus       237 ~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~~~~~~~~--------------------------  284 (333)
T 2i1m_A          237 SIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGIL------VNSKFYKLVKDGY--------------------------  284 (333)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC------SSHHHHHHHHHTC--------------------------
T ss_pred             HhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccc------hhHHHHHHHhcCC--------------------------
Confidence            9998899999999999999999998 999996543      1122211111100                          


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                    ....+...+..+.+||.+||+.||.+|||+.|++++
T Consensus       285 --------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  320 (333)
T 2i1m_A          285 --------------QMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSF  320 (333)
T ss_dssp             --------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHH
Confidence                          011223446789999999999999999999999873

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=2e-42  Score=347.16  Aligned_cols=255  Identities=22%  Similarity=0.324  Sum_probs=199.7

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc-ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ..++|++.+.||+|+||.||+|.+..+++.||||++... ....+.+.+|+.+++.+      .||||+++++++.....
T Consensus        27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~~  100 (317)
T 2buj_A           27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLF------NHPNILRLVAYCLRERG  100 (317)
T ss_dssp             TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTC------CCTTBCCCCEEEEEEET
T ss_pred             CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhc------CCCCeeeEEEEEEeccC
Confidence            467899999999999999999999999999999987543 33456788999999998      78899999999985544


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                      .....|+||||+ +++|.+++....  ...+++..+..++.||+.||+|||++ ||+||||||+|||++.          
T Consensus       101 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~dlkp~NIl~~~----------  169 (317)
T 2buj_A          101 AKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK-GYAHRDLKPTNILLGD----------  169 (317)
T ss_dssp             TEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECT----------
T ss_pred             CCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEcC----------
Confidence            557899999999 779999987542  34599999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (317)
T 2buj_A          170 --------------------------------------------------------------------------------  169 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------------cCCCCCCCCccCChhhcCCC---C
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------------FTNDIQTRQYRCPEVLLGSK---Y  340 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------------~~~~~gt~~y~aPE~l~~~~---~  340 (530)
                                                ++.++|+|||++......            .....||+.|+|||++.+..   +
T Consensus       170 --------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  223 (317)
T 2buj_A          170 --------------------------EGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVI  223 (317)
T ss_dssp             --------------------------TSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEE
T ss_pred             --------------------------CCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCC
Confidence                                      457999999988643211            12335799999999998654   6


Q ss_pred             CCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          341 STPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       341 ~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      +.++|||||||++|+|++|..||.......     ..+....  ..                                  
T Consensus       224 ~~~~Di~slG~il~el~~g~~p~~~~~~~~-----~~~~~~~--~~----------------------------------  262 (317)
T 2buj_A          224 DERTDVWSLGCVLYAMMFGEGPYDMVFQKG-----DSVALAV--QN----------------------------------  262 (317)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTHHHHHTT-----SCHHHHH--HC----------------------------------
T ss_pred             CchhhHHHHHHHHHHHHhCCCChhhhhccc-----chhhHHh--hc----------------------------------
Confidence            899999999999999999999994211000     0000000  00                                  


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                          ..........+..+.+||.+||..||.+|||+.+++++
T Consensus       263 ----~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  300 (317)
T 2buj_A          263 ----QLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQ  300 (317)
T ss_dssp             ----C--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----cCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHH
Confidence                00011223456789999999999999999999999986

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.1e-42  Score=342.56  Aligned_cols=248  Identities=21%  Similarity=0.297  Sum_probs=193.4

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+..++|++.+.||+|+||+||+|.+  +|+.||+|+++... ..+.+.+|+.+++++      .||||+++++++..  
T Consensus        17 ~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~-~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~--   85 (278)
T 1byg_A           17 ALNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA-TAQAFLAEASVMTQL------RHSNLVQLLGVIVE--   85 (278)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC---HHHHHTHHHHTTC------CCTTBCCEEEEECC--
T ss_pred             cCChhhceEEeEEecCCCceEEEEEE--cCCEEEEEEecchh-HHHHHHHHHHHHHhC------CCCCEeeEEEEEEc--
Confidence            34468999999999999999999976  48999999988654 456788999999988      78889999998764  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ....+|+||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        86 -~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~~-----------  152 (278)
T 1byg_A           86 -EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVSE-----------  152 (278)
T ss_dssp             -C--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECT-----------
T ss_pred             -CCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCcceEEEeC-----------
Confidence             235789999999 77999999765444489999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (278)
T 1byg_A          153 --------------------------------------------------------------------------------  152 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                               ++.++|+|||++...........+++.|+|||++.+..++.++|||||||++|+|
T Consensus       153 -------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  207 (278)
T 1byg_A          153 -------------------------DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEI  207 (278)
T ss_dssp             -------------------------TSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             -------------------------CCcEEEeeccccccccccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHH
Confidence                                     4579999999997665555556789999999999988899999999999999999


Q ss_pred             Hh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          357 AT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       357 lt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      ++ |.+||....      ..+....+..  +                                       .....+...+
T Consensus       208 ~t~g~~p~~~~~------~~~~~~~~~~--~---------------------------------------~~~~~~~~~~  240 (278)
T 1byg_A          208 YSFGRVPYPRIP------LKDVVPRVEK--G---------------------------------------YKMDAPDGCP  240 (278)
T ss_dssp             HTTSCCSCTTSC------GGGHHHHHTT--T---------------------------------------CCCCCCTTCC
T ss_pred             HhCCCCCCCCCC------HHHHHHHHhc--C---------------------------------------CCCCCcccCC
Confidence            98 999996432      1111111100  0                                       0112334567


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +.+.+||.+||..||.+|||+.|+++
T Consensus       241 ~~l~~li~~~l~~~p~~Rps~~~l~~  266 (278)
T 1byg_A          241 PAVYEVMKNCWHLDAAMRPSFLQLRE  266 (278)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHhcCChhhCCCHHHHHH
Confidence            88999999999999999999999986

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=2.8e-42  Score=337.56  Aligned_cols=247  Identities=18%  Similarity=0.235  Sum_probs=196.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ..++|++.++||+|+||+||+|++.  ++.||+|+++...   .....+.+|+.+++++      .||||+++++++...
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~   79 (271)
T 3kmu_A            8 DFKQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIF------SHPNVLPVLGACQSP   79 (271)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEET--TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCC------SCTTEECEEEEECTT
T ss_pred             CHHHhHHHHHhcCCCcceEEEEEEC--CeeEEEEEecccccCHHHHHHHHHHHHHHHhc------CCCchhheEEEEccC
Confidence            4578999999999999999999874  8899999987643   2345677888888877      789999999998854


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--ceeccCCCCcEEEeeccCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELS--IIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~g--IvHrDIKp~NILl~~~~~~~~~~  193 (530)
                        .....++||||+ +++|.+++.......+++..+..++.||+.||+|||++ |  |+||||||+|||++.        
T Consensus        80 --~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~--------  148 (271)
T 3kmu_A           80 --PAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDE--------  148 (271)
T ss_dssp             --TSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEECT--------
T ss_pred             --CCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEEcC--------
Confidence              346889999999 78999999865544689999999999999999999996 9  999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (271)
T 3kmu_A          149 --------------------------------------------------------------------------------  148 (271)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCC---cchhHHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYST---PADLWSFA  350 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~---~~DiWSlG  350 (530)
                                                  ++.++|+|||++...  ......||+.|+|||++.+..++.   ++||||||
T Consensus       149 ----------------------------~~~~~l~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG  198 (271)
T 3kmu_A          149 ----------------------------DMTARISMADVKFSF--QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFA  198 (271)
T ss_dssp             ----------------------------TSCEEEEGGGSCCTT--SCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHH
T ss_pred             ----------------------------CcceeEEeccceeee--cccCccCCccccChhhhccCCCCCCCchhhHHHHH
Confidence                                        455778877776432  234567899999999998876554   79999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|..||....      .......+. ..+.                                       ....
T Consensus       199 ~il~el~~g~~p~~~~~------~~~~~~~~~-~~~~---------------------------------------~~~~  232 (271)
T 3kmu_A          199 VLLWELVTREVPFADLS------NMEIGMKVA-LEGL---------------------------------------RPTI  232 (271)
T ss_dssp             HHHHHHHHCSCTTTTSC------HHHHHHHHH-HSCC---------------------------------------CCCC
T ss_pred             HHHHHHHhCCCCccccC------hHHHHHHHH-hcCC---------------------------------------CCCC
Confidence            99999999999996432      111111111 0000                                       1123


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +...++++.+||.+||+.||.+|||+.|+++
T Consensus       233 ~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (271)
T 3kmu_A          233 PPGISPHVSKLMKICMNEDPAKRPKFDMIVP  263 (271)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            3456788999999999999999999999986

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=2.1e-42  Score=347.85  Aligned_cols=249  Identities=22%  Similarity=0.366  Sum_probs=200.6

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..++|++.+.||+|+||.||+|.+.     .+++.||||++.....  ....+.+|+.+++.+      .||||++++++
T Consensus        23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~   96 (322)
T 1p4o_A           23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF------NCHHVVRLLGV   96 (322)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC------CCTTBCCEEEE
T ss_pred             hhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhc------CCCCEeeeEEE
Confidence            3679999999999999999999876     4678999999875432  334578899999988      78889999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEE
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL  183 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl  183 (530)
                      +.    .....++||||+ +++|.+++.....        ..+++..+..++.||+.||+|||++ ||+||||||+|||+
T Consensus        97 ~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~NIli  171 (322)
T 1p4o_A           97 VS----QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCMV  171 (322)
T ss_dssp             EC----SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT-TCBCSCCSGGGEEE
T ss_pred             Ec----cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC-CCccCCCccceEEE
Confidence            97    456889999999 7899999875431        3478999999999999999999997 99999999999999


Q ss_pred             eeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 045988          184 MSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSV  263 (530)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (530)
                      +.                                                                              
T Consensus       172 ~~------------------------------------------------------------------------------  173 (322)
T 1p4o_A          172 AE------------------------------------------------------------------------------  173 (322)
T ss_dssp             CT------------------------------------------------------------------------------
T ss_pred             cC------------------------------------------------------------------------------
Confidence            54                                                                              


Q ss_pred             ccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCC
Q 045988          264 EDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~  338 (530)
                                                            ++.++|+|||++......     .....||+.|+|||++.+.
T Consensus       174 --------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  215 (322)
T 1p4o_A          174 --------------------------------------DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDG  215 (322)
T ss_dssp             --------------------------------------TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHC
T ss_pred             --------------------------------------CCeEEECcCccccccccccccccccCCCCCCCccChhhhccC
Confidence                                                  457999999999754322     2344678899999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          339 KYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                      .++.++|||||||++|+|++ |..||.+..      .......+..  +.                              
T Consensus       216 ~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~------------------------------  257 (322)
T 1p4o_A          216 VFTTYSDVWSFGVVLWEIATLAEQPYQGLS------NEQVLRFVME--GG------------------------------  257 (322)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTSCCTTTTSC------HHHHHHHHHT--TC------------------------------
T ss_pred             CCCchhhHHHHHHHHHHHHhcCCCccccCC------HHHHHHHHHc--CC------------------------------
Confidence            89999999999999999999 899996432      1111111100  00                              


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                               ....+...+..+.+||.+||..||.+|||+.|+++|
T Consensus       258 ---------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~  293 (322)
T 1p4o_A          258 ---------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  293 (322)
T ss_dssp             ---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                     011234556789999999999999999999999986

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=5.8e-42  Score=362.72  Aligned_cols=255  Identities=19%  Similarity=0.251  Sum_probs=198.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.++||+|+||.||+|++..+++.||||++..... ...+.+|+++++.|.+     +++|..+..++.    ..
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~il~~L~~-----~~~i~~i~~~~~----~~   75 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK-HPQLLYESKIYRILQG-----GTGIPNVRWFGV----EG   75 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS-SCCHHHHHHHHHHTTT-----STTCCCEEEEEE----ET
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc-cHHHHHHHHHHHHhcC-----CCCCCeEEEEEe----eC
Confidence            6899999999999999999999999999999998776543 4467899999999964     334444444444    44


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ...+|||||++++|.+++... ...+++..++.|+.||+.||+|||++ |||||||||+||||....             
T Consensus        76 ~~~~lvme~~g~sL~~ll~~~-~~~l~~~~~~~i~~qi~~aL~yLH~~-gIvHrDIKP~NILl~~~~-------------  140 (483)
T 3sv0_A           76 DYNVLVMDLLGPSLEDLFNFC-SRKLSLKTVLMLADQMINRVEFVHSK-SFLHRDIKPDNFLMGLGR-------------  140 (483)
T ss_dssp             TEEEEEEECCCCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECCGG-------------
T ss_pred             CEEEEEEECCCCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccCcceEEEecCC-------------
Confidence            789999999999999999753 34599999999999999999999997 999999999999994210             


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (483)
T 3sv0_A          141 --------------------------------------------------------------------------------  140 (483)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------cCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                          ..+.+||+|||++......          ....+||+.|+|||++.+..++.++||||||
T Consensus       141 --------------------~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlG  200 (483)
T 3sv0_A          141 --------------------RANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLG  200 (483)
T ss_dssp             --------------------GTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHH
T ss_pred             --------------------CCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHH
Confidence                                0467999999999754322          1256799999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHh-CCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELL-GMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      |+||+|++|..||.+.....   ....+..+.... ....                                      ..
T Consensus       201 vil~elltG~~Pf~~~~~~~---~~~~~~~i~~~~~~~~~--------------------------------------~~  239 (483)
T 3sv0_A          201 YVLMYFLRGSLPWQGLKAGT---KKQKYEKISEKKVATSI--------------------------------------EA  239 (483)
T ss_dssp             HHHHHHHHSSCTTSSCCCSS---HHHHHHHHHHHHHHSCH--------------------------------------HH
T ss_pred             HHHHHHHhCCCCCccccchh---HHHHHHHHhhccccccH--------------------------------------HH
Confidence            99999999999997544211   111121111110 0000                                      01


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +...++.++.+||.+||..||.+||++.+|++
T Consensus       240 l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~  271 (483)
T 3sv0_A          240 LCRGYPTEFASYFHYCRSLRFDDKPDYSYLKR  271 (483)
T ss_dssp             HHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            11234678999999999999999999988765

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=3.6e-42  Score=363.08  Aligned_cols=248  Identities=23%  Similarity=0.405  Sum_probs=203.5

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+..++|++.++||+|+||+||+|.+. ++..||||+++......+.+.+|+++|++|      .|||||++++++..  
T Consensus       184 ~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~l~~~~~~--  254 (454)
T 1qcf_A          184 EIPRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTL------QHDKLVKLHAVVTK--  254 (454)
T ss_dssp             BCCGGGEEEEEEEECCSSEEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHTTC------CCTTBCCEEEEECS--
T ss_pred             eechHHeEEEEEcccCCceEEEEEEEC-CccEEEEEEecCCCccHHHHHHHHHHHhhC------CCCCEeeEEEEEeC--
Confidence            345678999999999999999999875 477899999987766678899999999998      78899999998762  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                         ..+||||||| +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus       255 ---~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~Nill~~-----------  319 (454)
T 1qcf_A          255 ---EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR-NYIHRDLRAANILVSA-----------  319 (454)
T ss_dssp             ---SSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCSGGGEEECT-----------
T ss_pred             ---CccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCCHHHEEECC-----------
Confidence               4689999999 88999999755444589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       320 --------------------------------------------------------------------------------  319 (454)
T 1qcf_A          320 --------------------------------------------------------------------------------  319 (454)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                               ++.+||+|||+++.....    .....+|..|+|||++.+..++.++|||||||+
T Consensus       320 -------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~  374 (454)
T 1qcf_A          320 -------------------------SLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGIL  374 (454)
T ss_dssp             -------------------------TCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             -------------------------CCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHH
Confidence                                     457999999999764321    233456788999999998889999999999999


Q ss_pred             HHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          353 CFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       353 l~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      +|||++ |..||.+.+      ..+....+..  +.                                       ....+
T Consensus       375 l~el~t~g~~P~~~~~------~~~~~~~i~~--~~---------------------------------------~~~~~  407 (454)
T 1qcf_A          375 LMEIVTYGRIPYPGMS------NPEVIRALER--GY---------------------------------------RMPRP  407 (454)
T ss_dssp             HHHHHTTSCCSSTTCC------HHHHHHHHHH--TC---------------------------------------CCCCC
T ss_pred             HHHHHhCCCCCCCCCC------HHHHHHHHHc--CC---------------------------------------CCCCC
Confidence            999999 999996533      1222221111  00                                       01223


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ..+++.+.+||.+||..||.+|||+.+|+.
T Consensus       408 ~~~~~~l~~li~~cl~~dp~~RPt~~~i~~  437 (454)
T 1qcf_A          408 ENCPEELYNIMMRCWKNRPEERPTFEYIQS  437 (454)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHccCChhHCcCHHHHHH
Confidence            455788999999999999999999999976

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=6.1e-42  Score=339.41  Aligned_cols=250  Identities=23%  Similarity=0.360  Sum_probs=188.5

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      .+..++|++.++||+|+||+||+|.+..   .||+|+++...   ...+.+.+|+.+++++      .||||++++++..
T Consensus        20 ei~~~~y~~~~~lG~G~~g~Vy~~~~~~---~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~   90 (289)
T 3og7_A           20 EIPDGQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAPTPQQLQAFKNEVGVLRKT------RHVNILLFMGYST   90 (289)
T ss_dssp             BCCTTSCEEEEEEEECSSEEEEEEESSS---EEEEEEESCSSCCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEC
T ss_pred             ccCccceeeeeEecCCCCeEEEEEEEcC---ceEEEEEeccCCCHHHHHHHHHHHHHHHhC------CCCcEEEEEeecc
Confidence            3447899999999999999999997543   49999987543   2345678899999988      7888999999653


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                           ....++||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        91 -----~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH~~-~i~H~Dlkp~Nil~~~--------  155 (289)
T 3og7_A           91 -----APQLAIVTQWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLHAK-SIIHRDLKSNNIFLHE--------  155 (289)
T ss_dssp             -----SSSCEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEET--------
T ss_pred             -----CCccEEEEEecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhC-CcccccCccceEEECC--------
Confidence                 34689999999 88999988543 34599999999999999999999997 9999999999999965        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (289)
T 3og7_A          156 --------------------------------------------------------------------------------  155 (289)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-----cccCCCCCCCCccCChhhc---CCCCCCcch
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-----KQFTNDIQTRQYRCPEVLL---GSKYSTPAD  345 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-----~~~~~~~gt~~y~aPE~l~---~~~~~~~~D  345 (530)
                                                  ++.++|+|||++....     .......||+.|+|||++.   +..++.++|
T Consensus       156 ----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~D  207 (289)
T 3og7_A          156 ----------------------------DNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSD  207 (289)
T ss_dssp             ----------------------------TTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHH
T ss_pred             ----------------------------CCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccc
Confidence                                        4579999999996432     2234457899999999997   566888999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|+|++|..||....      ....+..+.......+.                                   
T Consensus       208 i~slG~il~el~~g~~p~~~~~------~~~~~~~~~~~~~~~~~-----------------------------------  246 (289)
T 3og7_A          208 VYAFGIVLYELMTGQLPYSNIN------NRDQIIEMVGRGSLSPD-----------------------------------  246 (289)
T ss_dssp             HHHHHHHHHHHHHSSCTTSSCC------CHHHHHHHHHHTSCCCC-----------------------------------
T ss_pred             hHHHHHHHHHHHHCCCCccccc------hHHHHHHHhcccccCcc-----------------------------------
Confidence            9999999999999999996433      23333333222111000                                   


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                       ...+....++.+.+||.+||..||.+|||+.++++
T Consensus       247 -~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~  281 (289)
T 3og7_A          247 -LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILA  281 (289)
T ss_dssp             -TTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -hhhccccCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence             00122345688999999999999999999999986

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=4.4e-42  Score=338.34  Aligned_cols=246  Identities=21%  Similarity=0.386  Sum_probs=200.9

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|++.+.||+|+||.||+|.+. ++..||+|++.......+.+.+|+++++++      .||||+++++++..    
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~----   79 (279)
T 1qpc_A           11 PRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMSPDAFLAEANLMKQL------QHQRLVRLYAVVTQ----   79 (279)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS----
T ss_pred             CHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCcccHHHHHHHHHHHHhC------CCcCcceEEEEEcC----
Confidence            3579999999999999999999865 577899999987766678889999999999      78889999998763    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                       ...++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.             
T Consensus        80 -~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~Nil~~~-------------  144 (279)
T 1qpc_A           80 -EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER-NYIHRDLRAANILVSD-------------  144 (279)
T ss_dssp             -SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT-------------
T ss_pred             -CCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHhhEEEcC-------------
Confidence             3589999999 89999998754433599999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (279)
T 1qpc_A          145 --------------------------------------------------------------------------------  144 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                             ++.++|+|||++......    .....+|+.|+|||++.+..++.++|||||||++|
T Consensus       145 -----------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  201 (279)
T 1qpc_A          145 -----------------------TLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLT  201 (279)
T ss_dssp             -----------------------TSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHH
T ss_pred             -----------------------CCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHH
Confidence                                   457999999999764322    23345688999999998888999999999999999


Q ss_pred             HHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      +|++ |..||.+..      .......+..  +                                       .....+..
T Consensus       202 el~~~g~~p~~~~~------~~~~~~~~~~--~---------------------------------------~~~~~~~~  234 (279)
T 1qpc_A          202 EIVTHGRIPYPGMT------NPEVIQNLER--G---------------------------------------YRMVRPDN  234 (279)
T ss_dssp             HHHTTTCCSSTTCC------HHHHHHHHHT--T---------------------------------------CCCCCCTT
T ss_pred             HHHhCCCCCCcccC------HHHHHHHHhc--c---------------------------------------cCCCCccc
Confidence            9999 999996432      1111111110  0                                       00112334


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .+..+.+||.+||..||.+|||+.++++
T Consensus       235 ~~~~l~~li~~~l~~~p~~Rps~~~l~~  262 (279)
T 1qpc_A          235 CPEELYQLMRLCWKERPEDRPTFDYLRS  262 (279)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ccHHHHHHHHHHhccChhhCCCHHHHHH
Confidence            5688999999999999999999999987

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1e-42  Score=351.22  Aligned_cols=257  Identities=19%  Similarity=0.288  Sum_probs=200.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEE-----eCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAW-----DTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~-----~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..++|++.+.||+|+||.||+|+     +..+++.||||++...  ......+.+|+.+++++      .||||++++++
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~  101 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKF------NHQNIVRCIGV  101 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEE
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhC------CCCCCCeEEEE
Confidence            36899999999999999999998     5567889999998643  23345678899999999      78899999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADY-----RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~-----~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      +..    ....||||||+ +++|.+++.....     ..+++..+..++.||+.||.|||++ ||+||||||+|||++..
T Consensus       102 ~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~-~i~H~dlkp~NIli~~~  176 (327)
T 2yfx_A          102 SLQ----SLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLTCP  176 (327)
T ss_dssp             ECS----SSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESCS
T ss_pred             EcC----CCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC-CeecCcCCHhHEEEecC
Confidence            984    46789999999 8999999976542     3488999999999999999999997 99999999999999541


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                      ..                                                                              
T Consensus       177 ~~------------------------------------------------------------------------------  178 (327)
T 2yfx_A          177 GP------------------------------------------------------------------------------  178 (327)
T ss_dssp             ST------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcCCCCC
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                         ...++|+|||++.....     ......||+.|+|||++.+..++
T Consensus       179 -----------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  223 (327)
T 2yfx_A          179 -----------------------------------GRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFT  223 (327)
T ss_dssp             -----------------------------------TCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCC
T ss_pred             -----------------------------------cceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCC
Confidence                                               34599999999964322     12334678899999999988899


Q ss_pred             CcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 TPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 ~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      .++|||||||++|+|++ |..||....      .......+..  +                                  
T Consensus       224 ~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~~~~--~----------------------------------  261 (327)
T 2yfx_A          224 SKTDTWSFGVLLWEIFSLGYMPYPSKS------NQEVLEFVTS--G----------------------------------  261 (327)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHT--T----------------------------------
T ss_pred             chhhHHHHHHHHHHHHcCCCCCCCCcC------HHHHHHHHhc--C----------------------------------
Confidence            99999999999999998 999996432      1111111110  0                                  


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                           .....+...+..+.+||.+||..||.+|||+.++++|.|+-.
T Consensus       262 -----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~  303 (327)
T 2yfx_A          262 -----GRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  303 (327)
T ss_dssp             -----CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -----CCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHh
Confidence                 001123345678999999999999999999999999998753

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=8.5e-42  Score=336.76  Aligned_cols=247  Identities=19%  Similarity=0.280  Sum_probs=197.4

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCC---CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQ---TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~---~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ..++|.+.+.||+|+||+||+|.+..   ++..||+|++....  ...+.+.+|+.+++++      .||||+++++++.
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~   83 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNL------DHPHIVKLIGIIE   83 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHH------CCTTBCCEEEEEC
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhC------CCCCcceEEEEEc
Confidence            35799999999999999999998654   35679999987642  3456788999999999      7889999999986


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .     ...|+||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        84 ~-----~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~~--------  148 (281)
T 3cc6_A           84 E-----EPTWIIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLESI-NCVHRDIAVRNILVAS--------  148 (281)
T ss_dssp             S-----SSCEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEEEE--------
T ss_pred             C-----CCCEEEEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCccceEEECC--------
Confidence            3     3468999999 789999997533 4489999999999999999999997 9999999999999966        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (281)
T 3cc6_A          149 --------------------------------------------------------------------------------  148 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                  ++.++|+|||++......    .....+|+.|+|||++.+..++.++|||||
T Consensus       149 ----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  200 (281)
T 3cc6_A          149 ----------------------------PECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMF  200 (281)
T ss_dssp             ----------------------------TTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             ----------------------------CCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHH
Confidence                                        467999999999754322    234456889999999998889999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          350 ACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       350 G~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      ||++|+|++ |..||....      .......+...                                         ...
T Consensus       201 G~il~~llt~g~~p~~~~~------~~~~~~~~~~~-----------------------------------------~~~  233 (281)
T 3cc6_A          201 AVCMWEILSFGKQPFFWLE------NKDVIGVLEKG-----------------------------------------DRL  233 (281)
T ss_dssp             HHHHHHHHTTTCCTTTTSC------GGGHHHHHHHT-----------------------------------------CCC
T ss_pred             HHHHHHHHhCCCCCcccCC------hHHHHHHHhcC-----------------------------------------CCC
Confidence            999999998 999996432      11222111110                                         001


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..+...++.+.+||.+||..||.+|||+.|++++
T Consensus       234 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  267 (281)
T 3cc6_A          234 PKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCS  267 (281)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHH
Confidence            1233456789999999999999999999999875

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=5.7e-42  Score=346.85  Aligned_cols=250  Identities=23%  Similarity=0.357  Sum_probs=199.9

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeC-------CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDT-------QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~-------~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      ..++|++.+.||+|+||.||+|.+.       .++..||||+++...  .....+.+|+.+++++.     .||||++++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~  107 (334)
T 2pvf_A           33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----KHKNIINLL  107 (334)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEE
T ss_pred             CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhh-----cCCCEeeEE
Confidence            4689999999999999999999875       457899999987643  23456789999999994     688899999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceecc
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTD  175 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrD  175 (530)
                      +++.    ....+|+||||+ +++|.+++.....              ..+++..+..++.||+.||+|||++ ||+|||
T Consensus       108 ~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~D  182 (334)
T 2pvf_A          108 GACT----QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ-KCIHRD  182 (334)
T ss_dssp             EEEC----SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT-TEECSC
T ss_pred             EEEc----cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC-CeeCCC
Confidence            9998    446899999999 8899999975432              2388999999999999999999997 999999


Q ss_pred             CCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCC
Q 045988          176 LKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVD  255 (530)
Q Consensus       176 IKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (530)
                      |||+|||++.                                                                      
T Consensus       183 lkp~NIll~~----------------------------------------------------------------------  192 (334)
T 2pvf_A          183 LAARNVLVTE----------------------------------------------------------------------  192 (334)
T ss_dssp             CSGGGEEECT----------------------------------------------------------------------
T ss_pred             CccceEEEcC----------------------------------------------------------------------
Confidence            9999999954                                                                      


Q ss_pred             CCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCcc
Q 045988          256 AEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYR  330 (530)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~  330 (530)
                                                                    ++.+||+|||++.....     ......+|+.|+
T Consensus       193 ----------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~  226 (334)
T 2pvf_A          193 ----------------------------------------------NNVMKIADFGLARDINNIDYYKKTTNGRLPVKWM  226 (334)
T ss_dssp             ----------------------------------------------TCCEEECCCTTCEECTTTSSEECCSCCCCCGGGC
T ss_pred             ----------------------------------------------CCCEEEccccccccccccccccccCCCCccccee
Confidence                                                          45799999999975432     233446788999


Q ss_pred             CChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcc
Q 045988          331 CPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDL  409 (530)
Q Consensus       331 aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  409 (530)
                      |||++.+..++.++|||||||++|+|++ |..||.+..      .......+...                         
T Consensus       227 aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~~~~~-------------------------  275 (334)
T 2pvf_A          227 APEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP------VEELFKLLKEG-------------------------  275 (334)
T ss_dssp             CHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHHT-------------------------
T ss_pred             ChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC------HHHHHHHHhcC-------------------------
Confidence            9999998889999999999999999999 999996432      11111111100                         


Q ss_pred             ccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          410 RHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                      .....+...+..+.+||.+||..||.+|||+.|++++
T Consensus       276 ----------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  312 (334)
T 2pvf_A          276 ----------------HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  312 (334)
T ss_dssp             ----------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------------CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                            0012234556789999999999999999999999975

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=3.3e-42  Score=352.99  Aligned_cols=210  Identities=21%  Similarity=0.269  Sum_probs=172.0

Q ss_pred             eCCCEEEEEEeccccceEEEEEE-----eCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAW-----DTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~-----~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ..++|.+.++||+|+||+||+|+     +..+++.||||+++...  ...+.+|+++++++.+.   .|+||+++++++.
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~e~~~~~~l~~~---~~~~iv~~~~~~~  137 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN--PWEFYIGTQLMERLKPS---MQHMFMKFYSAHL  137 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC--HHHHHHHHHHHHHSCGG---GGGGBCCEEEEEE
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC--hhHHHHHHHHHHHhhhh---hhhhhhhhheeee
Confidence            35789999999999999999994     67789999999987653  56778899999988532   5899999999998


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYAD---YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~---~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                          .....||||||| +++|.+++....   ...+++..+..|+.||+.||+|||++ |||||||||+||||+......
T Consensus       138 ----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~-~ivHrDiKp~NIll~~~~~~~  212 (365)
T 3e7e_A          138 ----FQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC-EIIHGDIKPDNFILGNGFLEQ  212 (365)
T ss_dssp             ----CSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCSGGGEEECGGGTCC
T ss_pred             ----cCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC-CeecCCCCHHHEEecccccCc
Confidence                447899999999 899999997532   34599999999999999999999997 999999999999996521000


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                      .                                                                               
T Consensus       213 ~-------------------------------------------------------------------------------  213 (365)
T 3e7e_A          213 D-------------------------------------------------------------------------------  213 (365)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-----cccCCCCCCCCccCChhhcCCCCCCcch
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-----KQFTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-----~~~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                ......+.+||+|||+|....     ......+||+.|+|||++.+..|+.++|
T Consensus       214 --------------------------~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  267 (365)
T 3e7e_A          214 --------------------------DEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQID  267 (365)
T ss_dssp             -------------------------------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHH
T ss_pred             --------------------------ccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCcccc
Confidence                                      000014679999999996432     2346678999999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCC
Q 045988          346 LWSFACICFELATGDVLFD  364 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~  364 (530)
                      ||||||++|+|++|++||.
T Consensus       268 iwslG~il~elltg~~pf~  286 (365)
T 3e7e_A          268 YFGVAATVYCMLFGTYMKV  286 (365)
T ss_dssp             HHHHHHHHHHHHHSSCCCE
T ss_pred             HHHHHHHHHHHHhCCCccc
Confidence            9999999999999999994

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=5.3e-42  Score=361.51  Aligned_cols=254  Identities=24%  Similarity=0.385  Sum_probs=203.2

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +..++|++.++||+|+||.||+|.+.. +..||||+++......+.+.+|+.+|++|      .||||+++++++..   
T Consensus       181 i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~---  250 (452)
T 1fmk_A          181 IPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTMSPEAFLQEAQVMKKL------RHEKLVQLYAVVSE---  250 (452)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS---
T ss_pred             cChhHceeeeeecCCCCeEEEEEEECC-CceEEEEEeccCCCCHHHHHHHHHHHHhC------CCCCEeeEEEEEcC---
Confidence            456789999999999999999999865 46799999987666677899999999999      78889999998863   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                        ..+||||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.            
T Consensus       251 --~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~ivHrDlkp~Nill~~------------  315 (452)
T 1fmk_A          251 --EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILVGE------------  315 (452)
T ss_dssp             --SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECG------------
T ss_pred             --CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChhhEEECC------------
Confidence              4689999999 88999999765545699999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       316 --------------------------------------------------------------------------------  315 (452)
T 1fmk_A          316 --------------------------------------------------------------------------------  315 (452)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                              ++.+||+|||++......    .....+|..|+|||++.+..++.++|||||||++
T Consensus       316 ------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l  371 (452)
T 1fmk_A          316 ------------------------NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILL  371 (452)
T ss_dssp             ------------------------GGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             ------------------------CCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHH
Confidence                                    467999999999754322    2233567889999999988999999999999999


Q ss_pred             HHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |+|++ |..||.+..      ..+.+..+..  |                                       .....+.
T Consensus       372 ~el~t~g~~P~~~~~------~~~~~~~i~~--~---------------------------------------~~~~~~~  404 (452)
T 1fmk_A          372 TELTTKGRVPYPGMV------NREVLDQVER--G---------------------------------------YRMPCPP  404 (452)
T ss_dssp             HHHHTTTCCSSTTCC------HHHHHHHHHT--T---------------------------------------CCCCCCT
T ss_pred             HHHHhCCCCCCCCCC------HHHHHHHHHc--C---------------------------------------CCCCCCC
Confidence            99999 999996433      1122211110  0                                       0012234


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhc--CCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLT--HPWINVG  468 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~--hp~f~~~  468 (530)
                      ..++.+.+||.+||..||.+|||+.++++  ..+|...
T Consensus       405 ~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~  442 (452)
T 1fmk_A          405 ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  442 (452)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccC
Confidence            56788999999999999999999999987  4666544

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.9e-42  Score=338.56  Aligned_cols=249  Identities=21%  Similarity=0.350  Sum_probs=200.3

Q ss_pred             eCCCEEEEE-EeccccceEEEEEEeC--CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           40 KNGRYVVQS-KLGWGHFSTVWLAWDT--QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        40 ~~~~y~i~~-~LG~G~fg~Vy~a~~~--~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ..++|.+.+ .||+|+||.||+|.+.  .++..||||+++...  ...+.+.+|+.+++++      .||||+++++++.
T Consensus         7 ~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~   80 (287)
T 1u59_A            7 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL------DNPYIVRLIGVCQ   80 (287)
T ss_dssp             CGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             cHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhC------CCCCEeEEEEEec
Confidence            457888887 9999999999999864  468899999988642  3456788999999999      7888999999985


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .     ...++||||+ +++|.+++.. ....+++..+..++.||+.||.|||++ ||+||||||+|||++.        
T Consensus        81 ~-----~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nili~~--------  145 (287)
T 1u59_A           81 A-----EALMLVMEMAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEK-NFVHRDLAARNVLLVN--------  145 (287)
T ss_dssp             S-----SSEEEEEECCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEEE--------
T ss_pred             C-----CCcEEEEEeCCCCCHHHHHHh-CCccCCHHHHHHHHHHHHHHHHHHHHC-CEeeCCCchheEEEcC--------
Confidence            2     3589999999 7899998863 234599999999999999999999997 9999999999999965        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (287)
T 1u59_A          146 --------------------------------------------------------------------------------  145 (287)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                  ++.++|+|||++......      .....||+.|+|||++.+..++.++|||
T Consensus       146 ----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  197 (287)
T 1u59_A          146 ----------------------------RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVW  197 (287)
T ss_dssp             ----------------------------TTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHH
T ss_pred             ----------------------------CCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHH
Confidence                                        467999999999754321      2233568899999999888899999999


Q ss_pred             HHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          348 SFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       348 SlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      ||||++|+|++ |..||....      .......+..  +                                       .
T Consensus       198 slG~il~ellt~g~~p~~~~~------~~~~~~~i~~--~---------------------------------------~  230 (287)
T 1u59_A          198 SYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--G---------------------------------------K  230 (287)
T ss_dssp             HHHHHHHHHHTTSCCTTTTCC------THHHHHHHHT--T---------------------------------------C
T ss_pred             HHHHHHHHHHcCCCCCcccCC------HHHHHHHHhc--C---------------------------------------C
Confidence            99999999998 999996433      1222211110  0                                       0


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW  464 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~  464 (530)
                      ...++...++.+.+||.+||..||.+||++.++++|.+
T Consensus       231 ~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~  268 (287)
T 1u59_A          231 RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMR  268 (287)
T ss_dssp             CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence            11234456789999999999999999999999998753

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=5.8e-43  Score=364.60  Aligned_cols=254  Identities=15%  Similarity=0.126  Sum_probs=192.6

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcce-----------
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCV-----------  106 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~I-----------  106 (530)
                      ..|.+.++||+|+||+||+|++..+|+.||||++....    ...+.+.+|+.+++.+.|..   ++..           
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~---~~~~~~~~~~~~~~~  154 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIK---NQKQAKVHLRFIFPF  154 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCC---SHHHHHHHTCBCCCC
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCC---CHHHHHHhcccccch
Confidence            45889999999999999999999999999999987332    23567889999998886521   1111           


Q ss_pred             --eE------ecceeeec-CCCCcEEEEEEeccCcCHHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHhhCCce
Q 045988          107 --VK------LLDHFKHS-GPNGQHVCMVFEYLGENLLTLIKYAD-----YRGVPLHMVKEICFHILVGLDHLHRELSII  172 (530)
Q Consensus       107 --v~------~~~~~~~~-~~~~~~~~lVmE~~~~~L~~~i~~~~-----~~~l~~~~~~~i~~qll~aL~~LH~~~gIv  172 (530)
                        +.      ++.++... .......+++|++++++|.+++....     ...+++..+..++.||+.||+|||++ |||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ii  233 (413)
T 3dzo_A          155 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY-GLV  233 (413)
T ss_dssp             EEEECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             hhcccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC-Ccc
Confidence              11      11111110 00123578999999999999986321     23377788999999999999999997 999


Q ss_pred             eccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCC
Q 045988          173 HTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHT  252 (530)
Q Consensus       173 HrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (530)
                      ||||||+||||+.                                                                   
T Consensus       234 HrDiKp~NILl~~-------------------------------------------------------------------  246 (413)
T 3dzo_A          234 HTYLRPVDIVLDQ-------------------------------------------------------------------  246 (413)
T ss_dssp             CSCCCGGGEEECT-------------------------------------------------------------------
T ss_pred             cCCcccceEEEec-------------------------------------------------------------------
Confidence            9999999999965                                                                   


Q ss_pred             CCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCC
Q 045988          253 SVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCP  332 (530)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aP  332 (530)
                                                                       ++.+||+|||+++.........+| +.|+||
T Consensus       247 -------------------------------------------------~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aP  276 (413)
T 3dzo_A          247 -------------------------------------------------RGGVFLTGFEHLVRDGASAVSPIG-RGFAPP  276 (413)
T ss_dssp             -------------------------------------------------TCCEEECCGGGCEETTEEECCCCC-TTTCCH
T ss_pred             -------------------------------------------------CCeEEEEeccceeecCCccccCCC-CceeCc
Confidence                                                             456999999999876666677788 999999


Q ss_pred             hhh----------cCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccccc
Q 045988          333 EVL----------LGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDF  402 (530)
Q Consensus       333 E~l----------~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  402 (530)
                      |++          .+..|+.++|||||||++|+|++|+.||........                               
T Consensus       277 E~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~-------------------------------  325 (413)
T 3dzo_A          277 ETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGG-------------------------------  325 (413)
T ss_dssp             HHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSC-------------------------------
T ss_pred             hhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhh-------------------------------
Confidence            999          555688899999999999999999999964321100                               


Q ss_pred             ccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          403 FNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                                       ...+    +......++.+.+||.+||+.||.+|||+.++|+||||+..
T Consensus       326 -----------------~~~~----~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~~  370 (413)
T 3dzo_A          326 -----------------SEWI----FRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQL  370 (413)
T ss_dssp             -----------------SGGG----GSSCCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             -----------------HHHH----HhhcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHHHH
Confidence                             0000    01112345789999999999999999999999999999753

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=2e-41  Score=338.89  Aligned_cols=259  Identities=24%  Similarity=0.350  Sum_probs=194.2

Q ss_pred             ccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCccee
Q 045988           32 AVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVV  107 (530)
Q Consensus        32 ~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv  107 (530)
                      ...+|... .++|++.+.||+|+||.||+|.+..+|+.||||++...    ......+.+|+.+++++      .||||+
T Consensus        23 ~~~~~~~~-~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~   95 (310)
T 2wqm_A           23 RPDMGYNT-LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQL------NHPNVI   95 (310)
T ss_dssp             CGGGTTSS-GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTC------CCTTBC
T ss_pred             CCCccccc-ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhC------CCCCEe
Confidence            33445544 57899999999999999999999999999999998753    23346678899999998      788899


Q ss_pred             EecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          108 KLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYAD--YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       108 ~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~--~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                      ++++++..    ....++||||+ +++|.+++....  ...+++..+..++.||+.||.|||++ ||+||||||+|||++
T Consensus        96 ~~~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dl~p~NIl~~  170 (310)
T 2wqm_A           96 KYYASFIE----DNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR-RVMHRDIKPANVFIT  170 (310)
T ss_dssp             CEEEEEEE----TTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC
T ss_pred             eEEEEEEc----CCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC-CeeCCCCcHHHEEEc
Confidence            99999984    47899999999 779999987532  34589999999999999999999997 999999999999995


Q ss_pred             eccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcc
Q 045988          185 SMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVE  264 (530)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (530)
                      .                                                                               
T Consensus       171 ~-------------------------------------------------------------------------------  171 (310)
T 2wqm_A          171 A-------------------------------------------------------------------------------  171 (310)
T ss_dssp             T-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            4                                                                               


Q ss_pred             cccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCC
Q 045988          265 DQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                           ++.++|+|||++......   .....||+.|+|||++.+..++
T Consensus       172 -------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  214 (310)
T 2wqm_A          172 -------------------------------------TGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYN  214 (310)
T ss_dssp             -------------------------------------TSCEEECCC------------------CCSSCCHHHHTTCCCC
T ss_pred             -------------------------------------CCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCC
Confidence                                                 457999999998654322   2345789999999999998999


Q ss_pred             CcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCch
Q 045988          342 TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       342 ~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      .++|||||||++|+|++|..||.+...     ....+........ .+                                
T Consensus       215 ~~~Dv~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~-~~--------------------------------  256 (310)
T 2wqm_A          215 FKSDIWSLGCLLYEMAALQSPFYGDKM-----NLYSLCKKIEQCD-YP--------------------------------  256 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTC---C-----CHHHHHHHHHTTC-SC--------------------------------
T ss_pred             chhhHHHHHHHHHHHHhCCCCCcccch-----hHHHHHHHhhccc-CC--------------------------------
Confidence            999999999999999999999964321     1111111110000 00                                


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                            .......+.++.+||.+||..||.+|||+.+++++
T Consensus       257 ------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~  291 (310)
T 2wqm_A          257 ------PLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDV  291 (310)
T ss_dssp             ------CCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------CCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence                  00113456789999999999999999999999873

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=2.1e-42  Score=350.72  Aligned_cols=274  Identities=19%  Similarity=0.257  Sum_probs=209.0

Q ss_pred             CCCCCCccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCC
Q 045988           24 DYRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        24 ~~~~~~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h  103 (530)
                      ....+...|+.+++.+ .++|++.+.||+|+||+||+|.+  +++.||||++....  ...+.+|++++..+..    .|
T Consensus        25 ~~~~~~~~~~~~~~~~-~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~--~~~~~~e~~~~~~~~l----~h   95 (342)
T 1b6c_B           25 TSGSGSGLPLLVQRTI-ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSRE--ERSWFREAEIYQTVML----RH   95 (342)
T ss_dssp             CTTCCSSSCHHHHHHH-HHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGGG--HHHHHHHHHHHHHSCC----CC
T ss_pred             ccCCCCCCceeecccc-cccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCchh--HHHHHHHHHHHHHhhc----CC
Confidence            3446678888888888 67999999999999999999986  58999999987643  4567789999888421    78


Q ss_pred             cceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH--------hhCCceec
Q 045988          104 KCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH--------RELSIIHT  174 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH--------~~~gIvHr  174 (530)
                      |||+++++++.........+|+||||+ +++|.+++..   ..+++..+..++.||+.||+|||        ++ ||+||
T Consensus        96 ~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~-~ivH~  171 (342)
T 1b6c_B           96 ENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP-AIAHR  171 (342)
T ss_dssp             TTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC-EEECS
T ss_pred             CcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC-CeeeC
Confidence            999999999986543334899999999 7799999964   34899999999999999999999        76 99999


Q ss_pred             cCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCC
Q 045988          175 DLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSV  254 (530)
Q Consensus       175 DIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (530)
                      ||||+|||++.                                                                     
T Consensus       172 Dlkp~NIll~~---------------------------------------------------------------------  182 (342)
T 1b6c_B          172 DLKSKNILVKK---------------------------------------------------------------------  182 (342)
T ss_dssp             CCSGGGEEECT---------------------------------------------------------------------
T ss_pred             CCCHHHEEECC---------------------------------------------------------------------
Confidence            99999999954                                                                     


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-------ccCCCCCCC
Q 045988          255 DAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-------QFTNDIQTR  327 (530)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-------~~~~~~gt~  327 (530)
                                                                     ++.+||+|||++.....       ......||+
T Consensus       183 -----------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~  215 (342)
T 1b6c_B          183 -----------------------------------------------NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTK  215 (342)
T ss_dssp             -----------------------------------------------TSCEEECCCTTCEEEETTTTEEEECCCSCCCCG
T ss_pred             -----------------------------------------------CCCEEEEECCCceeccccccccccccccCCcCc
Confidence                                                           45799999999965432       234557999


Q ss_pred             CccCChhhcCCC------CCCcchhHHHHHHHHHHHhC----------CCCCCCCCCCCCCCChHHHHHHHHHhCCCchh
Q 045988          328 QYRCPEVLLGSK------YSTPADLWSFACICFELATG----------DVLFDPHSGDNYDRDEDHLALMMELLGMMPRK  391 (530)
Q Consensus       328 ~y~aPE~l~~~~------~~~~~DiWSlG~il~elltG----------~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~  391 (530)
                      .|+|||++.+..      ++.++|||||||++|+|++|          ..||........  ....+......-+..+. 
T Consensus       216 ~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~-  292 (342)
T 1b6c_B          216 RYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP--SVEEMRKVVCEQKLRPN-  292 (342)
T ss_dssp             GGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSC--CHHHHHHHHTTSCCCCC-
T ss_pred             ccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcc--cHHHHHHHHHHHHhCCC-
Confidence            999999998753      33689999999999999999          677754332111  11111111100000000 


Q ss_pred             hhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          392 IAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                                  ..    .. ......+..+.+||.+||+.||.+|||+.|+++|
T Consensus       293 ----------------------------~~----~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          293 ----------------------------IP----NR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             ----------------------------CC----GG-GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             ----------------------------Cc----cc-ccchhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence                                        00    00 0123456789999999999999999999999985

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=2e-43  Score=357.88  Aligned_cols=285  Identities=16%  Similarity=0.169  Sum_probs=198.8

Q ss_pred             cccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---------cchHHHHHHHHHHHHhh-----
Q 045988           31 HAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---------HYTEAALDEIKILKQIA-----   96 (530)
Q Consensus        31 ~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---------~~~~~~~~Ei~il~~l~-----   96 (530)
                      .|+.+.+.+..++|++.++||+|+||+||+|++  +|+.||||++....         ...+.+.+|+.+|+.|.     
T Consensus         9 ~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~   86 (336)
T 2vuw_A            9 GPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGE   86 (336)
T ss_dssp             CCBCHHHHSCHHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGC
T ss_pred             CCcchhhhcccccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhcc
Confidence            355555666678999999999999999999987  78999999987643         12377889999999997     


Q ss_pred             ----cCCCC-----------CCcceeEecceeeecCC---------CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHH
Q 045988           97 ----EGDPD-----------DKKCVVKLLDHFKHSGP---------NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMV  151 (530)
Q Consensus        97 ----~~~~~-----------~h~~Iv~~~~~~~~~~~---------~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~  151 (530)
                          |++..           .||||++++++|.....         ....+||||||| ++++.+.+..   ..+++..+
T Consensus        87 ~~~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~  163 (336)
T 2vuw_A           87 VCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATA  163 (336)
T ss_dssp             SSSBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHH
T ss_pred             ccccCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHH
Confidence                22211           16777777777764210         157899999999 7766666532   45899999


Q ss_pred             HHHHHHHHHHHHHHH-hhCCceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcC
Q 045988          152 KEICFHILVGLDHLH-RELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQG  230 (530)
Q Consensus       152 ~~i~~qll~aL~~LH-~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (530)
                      +.|+.||+.||+||| ++ |||||||||+||||+........                                      
T Consensus       164 ~~i~~qi~~aL~~lH~~~-~ivHrDlKp~NILl~~~~~~~~~--------------------------------------  204 (336)
T 2vuw_A          164 KSILHQLTASLAVAEASL-RFEHRDLHWGNVLLKKTSLKKLH--------------------------------------  204 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CCBCSCCCGGGEEEEECSCSEEE--------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhC-CEeECCCCHHHEEEeccCCccee--------------------------------------
Confidence            999999999999999 87 99999999999999763110000                                      


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecC
Q 045988          231 CSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDF  310 (530)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~Df  310 (530)
                                                              .         +.         .............+||+||
T Consensus       205 ----------------------------------------~---------~~---------~~~~~~~~~~~~~vkL~DF  226 (336)
T 2vuw_A          205 ----------------------------------------Y---------TL---------NGKSSTIPSCGLQVSIIDY  226 (336)
T ss_dssp             ----------------------------------------E---------EE---------TTEEEEEECTTEEEEECCC
T ss_pred             ----------------------------------------e---------ec---------cCccccccCCCceEEEeec
Confidence                                                    0         00         0000000001347999999


Q ss_pred             CcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHH-HHHHHhCCCCCCCCCCCCCCCChHHHHHHH-HHhCCC
Q 045988          311 GNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI-CFELATGDVLFDPHSGDNYDRDEDHLALMM-ELLGMM  388 (530)
Q Consensus       311 G~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i-l~elltG~~PF~~~~~~~~~~~~~~l~~i~-~~~g~~  388 (530)
                      |+|+.....  ..+||+.|+|||++.+.. +.++||||||++ .++++.|..||..         ...+..+. .++...
T Consensus       227 G~a~~~~~~--~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~---------~~~~~~~~~~~~~~~  294 (336)
T 2vuw_A          227 TLSRLERDG--IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSN---------VLWLHYLTDKMLKQM  294 (336)
T ss_dssp             TTCBEEETT--EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHH---------HHHHHHHHHHHHHTC
T ss_pred             cccEecCCC--cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcc---------hhhhhHHHHhhhhhh
Confidence            999865432  348999999999998866 889999998877 7889999999931         11111111 110000


Q ss_pred             chhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHh-cCCCCC
Q 045988          389 PRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL-THPWIN  466 (530)
Q Consensus       389 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL-~hp~f~  466 (530)
                              ...                 ..+       ....+...++++.+||.+||++|     ||.|+| +||||+
T Consensus       295 --------~~~-----------------~~~-------~~~~~~~~s~~~~dli~~~L~~d-----sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          295 --------TFK-----------------TKC-------NTPAMKQIKRKIQEFHRTMLNFS-----SATDLLCQHSLFK  336 (336)
T ss_dssp             --------CCS-----------------SCC-------CSHHHHHHHHHHHHHHHHGGGSS-----SHHHHHHHCGGGC
T ss_pred             --------ccC-----------------ccc-------chhhhhhcCHHHHHHHHHHhccC-----CHHHHHhcCCCcC
Confidence                    000                 000       00112356789999999999987     999999 999995

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=5.9e-42  Score=345.64  Aligned_cols=250  Identities=21%  Similarity=0.286  Sum_probs=198.2

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEE--EEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYV--ALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~v--AiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..++|++.+.||+|+||.||+|++..++..+  |+|.++..  ......+.+|+.+++++.     .||||+++++++..
T Consensus        23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~~~~~~   97 (327)
T 1fvr_A           23 DWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HHPNIINLLGACEH   97 (327)
T ss_dssp             CGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCC-----CCTTBCCEEEEEEE
T ss_pred             cHHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhcc-----CCCchhhhceeeee
Confidence            3578999999999999999999999998865  99987653  233456788999998884     68899999999984


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYAD--------------YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~--------------~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                          ...+|+||||+ +++|.+++....              ...+++..++.++.||+.||+|||++ ||+||||||+|
T Consensus        98 ----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~N  172 (327)
T 1fvr_A           98 ----RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARN  172 (327)
T ss_dssp             ----TTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGG
T ss_pred             ----CCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCccce
Confidence                47899999999 889999997543              23589999999999999999999997 99999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      ||++.                                                                           
T Consensus       173 Il~~~---------------------------------------------------------------------------  177 (327)
T 1fvr_A          173 ILVGE---------------------------------------------------------------------------  177 (327)
T ss_dssp             EEECG---------------------------------------------------------------------------
T ss_pred             EEEcC---------------------------------------------------------------------------
Confidence            99954                                                                           


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCC
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~  338 (530)
                                                               ++.++|+|||++.....  ......+|+.|+|||++.+.
T Consensus       178 -----------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  216 (327)
T 1fvr_A          178 -----------------------------------------NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYS  216 (327)
T ss_dssp             -----------------------------------------GGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHC
T ss_pred             -----------------------------------------CCeEEEcccCcCccccccccccCCCCCccccChhhhccc
Confidence                                                     45799999999964322  22344578899999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          339 KYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                      .++.++|||||||++|+|++ |..||.+..      ...    +...+..                              
T Consensus       217 ~~~~~~Di~slG~il~ellt~g~~pf~~~~------~~~----~~~~~~~------------------------------  256 (327)
T 1fvr_A          217 VYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAE----LYEKLPQ------------------------------  256 (327)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHH----HHHHGGG------------------------------
T ss_pred             cCCchhcchHHHHHHHHHHcCCCCCCCCCc------HHH----HHHHhhc------------------------------
Confidence            89999999999999999998 999996432      111    1111000                              


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                             ......+...++.+.+||.+||..||.+|||+.|+++|
T Consensus       257 -------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  294 (327)
T 1fvr_A          257 -------GYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  294 (327)
T ss_dssp             -------TCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------CCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                   00112234567889999999999999999999999986

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=2e-42  Score=348.09  Aligned_cols=264  Identities=22%  Similarity=0.272  Sum_probs=203.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|++.+.||+|+||+||+|++. +++.||||++.... ...+.+.+|+.+++.+      .||||+++++++.    .
T Consensus        38 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~----~  106 (321)
T 2qkw_B           38 TNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSFC------RHPHLVSLIGFCD----E  106 (321)
T ss_dssp             CCCCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCSSHHHHHHHHHHGGGSC------CCTTBCCEEEECC----C
T ss_pred             HhccCccceeecCCCeeEEEEEEC-CCCEEEEEEecccChHHHHHHHHHHHHHHhC------CCCCEeeEEEEEc----C
Confidence            478999999999999999999964 68999999876543 3356788899999888      7889999999998    4


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADY--RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~--~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                      ....++||||+ +++|.+++.....  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus       107 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~ivH~dlkp~Nil~~~-----------  174 (321)
T 2qkw_B          107 RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR-AIIHRDVKSINILLDE-----------  174 (321)
T ss_dssp             TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCSTTEEECT-----------
T ss_pred             CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC-CeecCCCCHHHEEECC-----------
Confidence            57899999999 8899988854332  2489999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (321)
T 2qkw_B          175 --------------------------------------------------------------------------------  174 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                               ++.+||+|||++......     .....||+.|+|||++.+..++.++|||||||
T Consensus       175 -------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~  229 (321)
T 2qkw_B          175 -------------------------NFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGV  229 (321)
T ss_dssp             -------------------------TCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHH
T ss_pred             -------------------------CCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHH
Confidence                                     467999999999753221     23345899999999999888999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|+.||...........   .........                   .+.+.....       ..  ......
T Consensus       230 il~ell~g~~p~~~~~~~~~~~~---~~~~~~~~~-------------------~~~~~~~~~-------~~--~~~~~~  278 (321)
T 2qkw_B          230 VLFEVLCARSAIVQSLPREMVNL---AEWAVESHN-------------------NGQLEQIVD-------PN--LADKIR  278 (321)
T ss_dssp             HHHHHHHCCTTCSCSSSSSCCCH---HHHTHHHHT-------------------TTCCCSSSS-------SS--CTTCSC
T ss_pred             HHHHHHhCCCcccccCcHHHHHH---HHHhhhccc-------------------cccHHHhcC-------hh--hccccC
Confidence            99999999999976543322111   100000000                   000000000       00  001234


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHP  463 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp  463 (530)
                      ...+..+.+||.+||+.||.+|||+.|+++|-
T Consensus       279 ~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  310 (321)
T 2qkw_B          279 PESLRKFGDTAVKCLALSSEDRPSMGDVLWKL  310 (321)
T ss_dssp             HHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            56678899999999999999999999999864

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=8.4e-42  Score=345.51  Aligned_cols=281  Identities=18%  Similarity=0.218  Sum_probs=193.3

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC-
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG-  117 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~-  117 (530)
                      +..++|++.++||+|+||+||+|.+  +++.||||++....  ...+..|.+++..    ....||||+++++.+.... 
T Consensus        10 ~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~--~~~~~~e~~~~~~----~~~~h~~i~~~~~~~~~~~~   81 (336)
T 3g2f_A           10 LDLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFAN--RQNFINEKNIYRV----PLMEHDNIARFIVGDERVTA   81 (336)
T ss_dssp             CCTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGG--HHHHHHHHHHHTS----TTCCCTTBCCEEEEEEEECT
T ss_pred             cChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccc--hhhHHHHHHHHHH----HhccCcchhhheeccccccc
Confidence            4468999999999999999999965  78999999987644  3344445444332    1127999999998665432 


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC---------CceeccCCCCcEEEeecc
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHREL---------SIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~---------gIvHrDIKp~NILl~~~~  187 (530)
                      .....+||||||| +++|.+++...   ..++..+..++.||+.||+|||+ .         ||+||||||+||||+.  
T Consensus        82 ~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~~L~~LH~-~~~~~~~~~~~ivH~Dikp~Nill~~--  155 (336)
T 3g2f_A           82 DGRMEYLLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAHSVTRGLAYLHT-ELPRGDHYKPAISHRDLNSRNVLVKN--  155 (336)
T ss_dssp             TSCEEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHC-CBCCGGGCBCCEECSSCSGGGEEECT--
T ss_pred             CCCceEEEEEecCCCCcHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHh-hhccccccccceeecccccceEEEcC--
Confidence            2345789999999 88999999643   36889999999999999999998 5         9999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (336)
T 3g2f_A          156 --------------------------------------------------------------------------------  155 (336)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----------ccCCCCCCCCccCChhhc
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----------QFTNDIQTRQYRCPEVLL  336 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----------~~~~~~gt~~y~aPE~l~  336 (530)
                                                        ++.+||+|||++.....           .....+||+.|+|||++.
T Consensus       156 ----------------------------------~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  201 (336)
T 3g2f_A          156 ----------------------------------DGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLE  201 (336)
T ss_dssp             ----------------------------------TSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHT
T ss_pred             ----------------------------------CCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhc
Confidence                                              45799999999965321           123457999999999998


Q ss_pred             C-------CCCCCcchhHHHHHHHHHHHhCCCCCCCCCC-CCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCc
Q 045988          337 G-------SKYSTPADLWSFACICFELATGDVLFDPHSG-DNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD  408 (530)
Q Consensus       337 ~-------~~~~~~~DiWSlG~il~elltG~~PF~~~~~-~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  408 (530)
                      +       ..++.++|||||||++|+|++|..||..... ......      +....+..|......             
T Consensus       202 ~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-------------  262 (336)
T 3g2f_A          202 GAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMA------FQTEVGNHPTFEDMQ-------------  262 (336)
T ss_dssp             TCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCT------THHHHCSSCCHHHHH-------------
T ss_pred             CCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHh------hhcccCCCchHHHHH-------------
Confidence            7       3467789999999999999999776643322 111110      011111111100000             


Q ss_pred             cccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHh------cCCCCCCCCC
Q 045988          409 LRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL------THPWINVGPR  470 (530)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL------~hp~f~~~~~  470 (530)
                        ..  .............+......++.+.+||.+||..||.+|||+.|++      .++|-+....
T Consensus       263 --~~--~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~~~  326 (336)
T 3g2f_A          263 --VL--VSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNKSV  326 (336)
T ss_dssp             --HH--HTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC----
T ss_pred             --hh--hcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcccC
Confidence              00  0000000000011112234567899999999999999999999994      4788876543

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=3.2e-42  Score=354.16  Aligned_cols=253  Identities=19%  Similarity=0.286  Sum_probs=192.6

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeC---CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      .+...+..++|.+.+.||+|+||.||+|++.   .++..||||+++...  ...+.+.+|+.+|+++      .||||++
T Consensus        37 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~  110 (373)
T 2qol_A           37 EFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQF------DHPNIIR  110 (373)
T ss_dssp             TTSCBCCGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTC------CCTTBCC
T ss_pred             HHHhhcCHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhC------CCCCCCe
Confidence            4455666789999999999999999999876   457789999987542  3345688999999998      7889999


Q ss_pred             ecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      +++++.    ....++|||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.  
T Consensus       111 ~~~~~~----~~~~~~lv~e~~~~~sL~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~--  182 (373)
T 2qol_A          111 LEGVVT----KSKPVMIVTEYMENGSLDSFLRKH-DAQFTVIQLVGMLRGIASGMKYLSDM-GYVHRDLAARNILINS--  182 (373)
T ss_dssp             EEEEEC----SSSSCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT--
T ss_pred             EEEEEe----eCCceEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCcceEEEcC--
Confidence            999998    446899999999 89999999743 23599999999999999999999997 9999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (373)
T 2qol_A          183 --------------------------------------------------------------------------------  182 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccccc------CCCCCCCCccCChhhcCCCCC
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQF------TNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~------~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                        ++.+||+|||++.......      ....+|+.|+|||++.+..++
T Consensus       183 ----------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  228 (373)
T 2qol_A          183 ----------------------------------NLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT  228 (373)
T ss_dssp             ----------------------------------TCCEEECCC----------------------CTTSCHHHHHHCCCC
T ss_pred             ----------------------------------CCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcC
Confidence                                              4679999999997543221      122346789999999988999


Q ss_pred             CcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 TPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 ~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      .++|||||||++|+|++ |..||...+      .......+...                                    
T Consensus       229 ~~~Dv~SlG~il~ellt~g~~P~~~~~------~~~~~~~i~~~------------------------------------  266 (373)
T 2qol_A          229 SASDVWSYGIVLWEVMSYGERPYWEMS------NQDVIKAVDEG------------------------------------  266 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-CTTTTCC------HHHHHHHHHTT------------------------------------
T ss_pred             chhcHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcC------------------------------------
Confidence            99999999999999998 999995432      11111111000                                    


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                           .....+...+..+.+||.+||+.||.+||++.++++
T Consensus       267 -----~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~  302 (373)
T 2qol_A          267 -----YRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVS  302 (373)
T ss_dssp             -----EECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----CCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHH
Confidence                 001123345678999999999999999999999886

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-41  Score=342.05  Aligned_cols=253  Identities=19%  Similarity=0.293  Sum_probs=195.9

Q ss_pred             cCcEeeCCCEEEEEEeccccceEEEEEEeCCCC----eEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           35 MGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTS----HYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        35 ~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~----~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      +...+...+|.+.+.||+|+||+||+|.+..++    ..||||+++...  .....+.+|+.+++++      .||||++
T Consensus        37 ~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~  110 (333)
T 1mqb_A           37 FTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF------SHHNIIR  110 (333)
T ss_dssp             -CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTC------CCTTBCC
T ss_pred             ccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhC------CCCCCCc
Confidence            334556789999999999999999999876553    569999987543  2345678899999998      7889999


Q ss_pred             ecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      +++++.    .....+|||||+ +++|.+++... ...+++..+..++.||+.||.|||++ ||+||||||+|||++.  
T Consensus       111 ~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIl~~~--  182 (333)
T 1mqb_A          111 LEGVIS----KYKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANM-NYVHRDLAARNILVNS--  182 (333)
T ss_dssp             EEEEEC----SSSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT--
T ss_pred             EEEEEe----cCCCcEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChheEEECC--
Confidence            999998    457899999999 77999998743 34599999999999999999999997 9999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (333)
T 1mqb_A          183 --------------------------------------------------------------------------------  182 (333)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCC
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYS  341 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~  341 (530)
                                                        ++.+||+|||++......      .....+|+.|+|||++.+..++
T Consensus       183 ----------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  228 (333)
T 1mqb_A          183 ----------------------------------NLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFT  228 (333)
T ss_dssp             ----------------------------------TCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCC
T ss_pred             ----------------------------------CCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCC
Confidence                                              457999999999754322      1223457889999999998999


Q ss_pred             CcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCc
Q 045988          342 TPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL  420 (530)
Q Consensus       342 ~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (530)
                      .++|||||||++|+|++ |..||....      .......+..  +                                  
T Consensus       229 ~~~Di~slG~il~ellt~g~~pf~~~~------~~~~~~~~~~--~----------------------------------  266 (333)
T 1mqb_A          229 SASDVWSFGIVMWEVMTYGERPYWELS------NHEVMKAIND--G----------------------------------  266 (333)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHT--T----------------------------------
T ss_pred             chhhhHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHHC--C----------------------------------
Confidence            99999999999999999 999995432      1111111110  0                                  


Q ss_pred             hhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                           .....+...+..+.+||.+||..||.+||++.+++++
T Consensus       267 -----~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  303 (333)
T 1mqb_A          267 -----FRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSI  303 (333)
T ss_dssp             -----CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             -----CcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                 0011233456789999999999999999999999874

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=340.83  Aligned_cols=279  Identities=20%  Similarity=0.253  Sum_probs=200.4

Q ss_pred             CCCCCCccccccCcEe--------eCCCEEEEEEeccccceEEEEEE----eCCCCeEEEEEEecccc-cchHHHHHHHH
Q 045988           24 DYRRGGYHAVRMGDTF--------KNGRYVVQSKLGWGHFSTVWLAW----DTQTSHYVALKVQKSAQ-HYTEAALDEIK   90 (530)
Q Consensus        24 ~~~~~~~~~~~~g~~~--------~~~~y~i~~~LG~G~fg~Vy~a~----~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~   90 (530)
                      .|..+.|+|..++..+        ..++|++++.||+|+||.||+|+    +..+++.||||++.... .....+.+|+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~   94 (326)
T 2w1i_A           15 PTTENLYFQGAMGSAFEDRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIE   94 (326)
T ss_dssp             ----------------------CCCGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHhcccCccccCHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHH
Confidence            3455567777777665        24579999999999999999998    46689999999987643 33467889999


Q ss_pred             HHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC
Q 045988           91 ILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHREL  169 (530)
Q Consensus        91 il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~  169 (530)
                      +++++      .||||+++++++...  ....+++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ 
T Consensus        95 ~l~~l------~h~~iv~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-  164 (326)
T 2w1i_A           95 ILKSL------QHDNIVKYKGVCYSA--GRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK-  164 (326)
T ss_dssp             HHHTC------CCTTBCCEEEEECC------CCEEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHhC------CCCCeeeEEEEEEec--CCCceEEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            99999      688899999998754  335789999999 789999997543 3489999999999999999999997 


Q ss_pred             CceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCC
Q 045988          170 SIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSP  249 (530)
Q Consensus       170 gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (530)
                      ||+||||||+|||++.                                                                
T Consensus       165 ~ivH~dikp~NIli~~----------------------------------------------------------------  180 (326)
T 2w1i_A          165 RYIHRDLATRNILVEN----------------------------------------------------------------  180 (326)
T ss_dssp             TEECSCCCGGGEEEEE----------------------------------------------------------------
T ss_pred             CEeccCCCcceEEEcC----------------------------------------------------------------
Confidence            9999999999999966                                                                


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCC
Q 045988          250 DHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTND  323 (530)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~  323 (530)
                                                                          ++.++|+|||++......      ....
T Consensus       181 ----------------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~  208 (326)
T 2w1i_A          181 ----------------------------------------------------ENRVKIGDFGLTKVLPQDKEYYKVKEPG  208 (326)
T ss_dssp             ----------------------------------------------------TTEEEECCCTTCEECCSSCSEEECSSCC
T ss_pred             ----------------------------------------------------CCcEEEecCcchhhccccccccccccCC
Confidence                                                                467999999999764322      2334


Q ss_pred             CCCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccc
Q 045988          324 IQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF  403 (530)
Q Consensus       324 ~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  403 (530)
                      .++..|+|||++.+..++.++|||||||++|+|++|..||...           ...+....+.........        
T Consensus       209 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~-----------~~~~~~~~~~~~~~~~~~--------  269 (326)
T 2w1i_A          209 ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP-----------PAEFMRMIGNDKQGQMIV--------  269 (326)
T ss_dssp             SCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSH-----------HHHHHHHHCTTCCTHHHH--------
T ss_pred             CCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHhhccccchhhhH--------
Confidence            5778899999999888999999999999999999999998421           111112222111100000        


Q ss_pred             cccCccccchhcccCCchhhhh--hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          404 NRHGDLRHIRRLRFWPLNKVLI--EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                            .        .+...+.  .....+...+.++.+||.+||..||.+|||+.|+++
T Consensus       270 ------~--------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          270 ------F--------HLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL  315 (326)
T ss_dssp             ------H--------HHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ------H--------HHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                  0        0000000  012234556789999999999999999999999985

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=1.8e-41  Score=339.67  Aligned_cols=253  Identities=21%  Similarity=0.320  Sum_probs=192.0

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCC---CCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQ---TSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~---~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ..++|.+.+.||+|+||.||+|.+..   ++..||+|+++...   ...+.+.+|+.+++++      .||||+++++++
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~  105 (313)
T 3brb_A           32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDF------SHPNVIRLLGVC  105 (313)
T ss_dssp             CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTC------CCTTBCCCCEEE
T ss_pred             CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcC------CCCCeeeeeEEE
Confidence            45799999999999999999998765   56799999987543   2345678899999998      788999999999


Q ss_pred             eecCCC-CcEEEEEEecc-CcCHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          114 KHSGPN-GQHVCMVFEYL-GENLLTLIKYA----DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       114 ~~~~~~-~~~~~lVmE~~-~~~L~~~i~~~----~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      ...... ....++||||+ +++|.+++...    ....+++..+..++.||+.||.|||++ ||+||||||+|||++.  
T Consensus       106 ~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dikp~NIli~~--  182 (313)
T 3brb_A          106 IEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR-NFLHRDLAARNCMLRD--  182 (313)
T ss_dssp             EC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSGGGEEECT--
T ss_pred             eeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCcceEEEcC--
Confidence            864211 13569999999 88999998543    224599999999999999999999997 9999999999999954  


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (313)
T 3brb_A          183 --------------------------------------------------------------------------------  182 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCC
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYST  342 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~  342 (530)
                                                        ++.+||+|||++......     .....+++.|+|||++.+..++.
T Consensus       183 ----------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  228 (313)
T 3brb_A          183 ----------------------------------DMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTS  228 (313)
T ss_dssp             ----------------------------------TSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCH
T ss_pred             ----------------------------------CCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccc
Confidence                                              457999999999754321     23345688999999999999999


Q ss_pred             cchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCch
Q 045988          343 PADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       343 ~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      ++|||||||++|+|++ |.+||....      .......+..  +                                   
T Consensus       229 ~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~-----------------------------------  265 (313)
T 3brb_A          229 KSDVWAFGVTMWEIATRGMTPYPGVQ------NHEMYDYLLH--G-----------------------------------  265 (313)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSSTTCC------GGGHHHHHHT--T-----------------------------------
T ss_pred             hhhhHHHHHHHHHHHhcCCCCCccCC------HHHHHHHHHc--C-----------------------------------
Confidence            9999999999999999 999996543      1111111110  0                                   


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                          .....+...++.+.+||.+||..||.+|||+.+++++
T Consensus       266 ----~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  302 (313)
T 3brb_A          266 ----HRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQ  302 (313)
T ss_dssp             ----CCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             ----CCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                0112234556789999999999999999999999875

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=2.5e-41  Score=335.24  Aligned_cols=244  Identities=23%  Similarity=0.350  Sum_probs=194.7

Q ss_pred             CCCEEEEE-EeccccceEEEEEE--eCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           41 NGRYVVQS-KLGWGHFSTVWLAW--DTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        41 ~~~y~i~~-~LG~G~fg~Vy~a~--~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      .++|.+.+ .||+|+||+||+|.  +..+++.||||+++...   ...+.+.+|+++++.+      .||||+++++++.
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~   88 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL------DNPYIVRMIGICE   88 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTC------CCTTBCCEEEEEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhC------CCCCEEEEEEEEC
Confidence            57899998 99999999999994  45678999999987643   2246788999999998      7889999999984


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .     ...++||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.        
T Consensus        89 ~-----~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dikp~Nil~~~--------  152 (291)
T 1xbb_A           89 A-----ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES-NFVHRDLAARNVLLVT--------  152 (291)
T ss_dssp             S-----SSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE--------
T ss_pred             C-----CCcEEEEEeCCCCCHHHHHHhC--cCCCHHHHHHHHHHHHHHHHHHHhC-CeEcCCCCcceEEEeC--------
Confidence            2     4689999999 78999999753  4499999999999999999999997 9999999999999966        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (291)
T 1xbb_A          153 --------------------------------------------------------------------------------  152 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                  ++.++|+|||++......      .....+|+.|+|||++.+..++.++|||
T Consensus       153 ----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  204 (291)
T 1xbb_A          153 ----------------------------QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVW  204 (291)
T ss_dssp             ----------------------------TTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHH
T ss_pred             ----------------------------CCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHH
Confidence                                        467999999999754322      2233567889999999988899999999


Q ss_pred             HHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          348 SFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       348 SlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      ||||++|+|++ |..||....       ...+...... +                                       .
T Consensus       205 slG~il~~l~~~g~~p~~~~~-------~~~~~~~~~~-~---------------------------------------~  237 (291)
T 1xbb_A          205 SFGVLMWEAFSYGQKPYRGMK-------GSEVTAMLEK-G---------------------------------------E  237 (291)
T ss_dssp             HHHHHHHHHHTTTCCSSTTCC-------HHHHHHHHHT-T---------------------------------------C
T ss_pred             HHHHHHHHHHhcCCCCCCCCC-------HHHHHHHHHc-C---------------------------------------C
Confidence            99999999999 999996432       1111111100 0                                       0


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ....+...++.+.+||.+||..||.+||++.++++
T Consensus       238 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  272 (291)
T 1xbb_A          238 RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  272 (291)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            11233456788999999999999999999999986

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=2e-41  Score=364.26  Aligned_cols=253  Identities=24%  Similarity=0.386  Sum_probs=206.3

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +..++|++.++||+|+||.||+|.+.. +..||||+++......+.+.+|+++|++|      .|+|||++++++..   
T Consensus       264 i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~---  333 (535)
T 2h8h_A          264 IPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTMSPEAFLQEAQVMKKL------RHEKLVQLYAVVSE---  333 (535)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETT-TEEEEEEEECTTSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS---
T ss_pred             cchhhhhhheecccCCCeEEEEEEECC-CceEEEEEeCCCCCCHHHHHHHHHHHHhC------CCCCEeeEEEEEee---
Confidence            456789999999999999999999865 46799999987666677899999999999      78889999998863   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                        ..+||||||| +++|.+++.......+++..+..|+.||+.||+|||++ |||||||||+||||+.            
T Consensus       334 --~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~ivHrDlkp~NIll~~------------  398 (535)
T 2h8h_A          334 --EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILVGE------------  398 (535)
T ss_dssp             --SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECG------------
T ss_pred             --ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCHhhEEEcC------------
Confidence              4689999999 88999999765445699999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       399 --------------------------------------------------------------------------------  398 (535)
T 2h8h_A          399 --------------------------------------------------------------------------------  398 (535)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                              +..+||+|||++.....    ......++..|+|||++.+..|+.++|||||||+|
T Consensus       399 ------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l  454 (535)
T 2h8h_A          399 ------------------------NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILL  454 (535)
T ss_dssp             ------------------------GGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             ------------------------CCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHH
Confidence                                    46799999999975432    12344567899999999988899999999999999


Q ss_pred             HHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |+|++ |..||.+..      ..+.+..+..  +                                       .....+.
T Consensus       455 ~el~t~g~~P~~~~~------~~~~~~~i~~--~---------------------------------------~~~~~~~  487 (535)
T 2h8h_A          455 TELTTKGRVPYPGMV------NREVLDQVER--G---------------------------------------YRMPCPP  487 (535)
T ss_dssp             HHHTTTTCCSSTTCC------HHHHHHHHHT--T---------------------------------------CCCCCCT
T ss_pred             HHHHhCCCCCCCCCC------HHHHHHHHHc--C---------------------------------------CCCCCCC
Confidence            99999 999996432      1122211110  0                                       0012234


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcC--CCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTH--PWINV  467 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~h--p~f~~  467 (530)
                      .++..+.+||.+||..||.+|||+.+|++.  .+|..
T Consensus       488 ~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~  524 (535)
T 2h8h_A          488 ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  524 (535)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred             CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence            567889999999999999999999999873  56654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=2.5e-42  Score=347.94  Aligned_cols=268  Identities=20%  Similarity=0.235  Sum_probs=201.2

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|.+.+.||+|+||+||+|++ .+++.||||++....  .....+.+|+.+++.+      .||||+++++++.    
T Consensus        29 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~----   97 (326)
T 3uim_A           29 SDNFSNKNILGRGGFGKVYKGRL-ADGTLVAVKRLKEERTQGGELQFQTEVEMISMA------VHRNLLRLRGFCM----   97 (326)
T ss_dssp             TTSSCSTTEEECCSSSEEEEECC-SSSCCEEEEECCC-----CCCHHHHHHHGGGTC------CCTTBCCCCEEEC----
T ss_pred             hhccccceeEecCCCcEEEEEEe-cCCCEEEEEEeccccCchHHHHHHHHHHHHHhc------cCCCccceEEEEe----
Confidence            57899999999999999999974 468999999987643  2233678899998888      7889999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhC--CceeccCCCCcEEEeeccCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADY--RGVPLHMVKEICFHILVGLDHLHREL--SIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~--~~l~~~~~~~i~~qll~aL~~LH~~~--gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .....++||||+ +++|.+++.....  ..+++..+..++.||+.||+|||++.  ||+||||||+|||++.        
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~--------  169 (326)
T 3uim_A           98 TPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDE--------  169 (326)
T ss_dssp             CSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECT--------
T ss_pred             cCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECC--------
Confidence            446789999999 8899999975433  23899999999999999999999832  9999999999999954        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (326)
T 3uim_A          170 --------------------------------------------------------------------------------  169 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                  ++.++|+|||++.....    ......||+.|+|||++.+..++.++|||||
T Consensus       170 ----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl  221 (326)
T 3uim_A          170 ----------------------------EFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGY  221 (326)
T ss_dssp             ----------------------------TCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHH
T ss_pred             ----------------------------CCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhH
Confidence                                        45799999999975432    2344569999999999988889999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|..||........ ........+...+.                   ...+.....         ......
T Consensus       222 G~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~~~---------~~~~~~  272 (326)
T 3uim_A          222 GVMLLELITGQRAFDLARLAND-DDVMLLDWVKGLLK-------------------EKKLEALVD---------VDLQGN  272 (326)
T ss_dssp             HHHHHHHHHCCCSBCHHHHTTT-SCSBHHHHHTTTTS-------------------SCCSTTSSC---------TTCTTS
T ss_pred             HHHHHHHHhCCCcccccccccc-cchhHHHHHHHHhh-------------------chhhhhhcC---------hhhccc
Confidence            9999999999999952110000 00000000000000                   000000000         000113


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW  464 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~  464 (530)
                      ++...+..+.+||.+||+.||.+|||+.|+++|-+
T Consensus       273 ~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~  307 (326)
T 3uim_A          273 YKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE  307 (326)
T ss_dssp             CCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhc
Confidence            44566788999999999999999999999999854

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=1.7e-41  Score=341.08  Aligned_cols=261  Identities=24%  Similarity=0.311  Sum_probs=198.2

Q ss_pred             eeCCCEEEEEEeccccceEEEEEE----eCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAW----DTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~----~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      +....|+++++||+|+||+||+|.    +..+++.||||+++...  .....+.+|+.+|+++      .||||++++++
T Consensus        28 ~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~  101 (318)
T 3lxp_A           28 FHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL------YHEHIIKYKGC  101 (318)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEE
T ss_pred             ecHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhC------CCcchhhEEEE
Confidence            433345999999999999998875    34578999999988653  3356688999999999      68889999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +...  ....+++||||+ +++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+|||++.      
T Consensus       102 ~~~~--~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~i~~~l~~~l~~LH~~-~ivH~Dikp~Nil~~~------  169 (318)
T 3lxp_A          102 CEDA--GAASLQLVMEYVPLGSLRDYLPR---HSIGLAQLLLFAQQICEGMAYLHAQ-HYIHRDLAARNVLLDN------  169 (318)
T ss_dssp             EEET--TTTEEEEEECCCTTCBHHHHGGG---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT------
T ss_pred             EecC--CCceEEEEEecccCCcHHHHHhh---CCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCchheEEEcC------
Confidence            9864  347899999999 7899999863   3499999999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (318)
T 3lxp_A          170 --------------------------------------------------------------------------------  169 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcch
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                    ++.++|+|||++......      .....||+.|+|||++.+..++.++|
T Consensus       170 ------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  219 (318)
T 3lxp_A          170 ------------------------------DRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASD  219 (318)
T ss_dssp             ------------------------------TCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHH
T ss_pred             ------------------------------CCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHH
Confidence                                          457999999999754322      33456788999999999888999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh-
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL-  424 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  424 (530)
                      ||||||++|+|++|..||....           .......+........                 .      ...... 
T Consensus       220 i~slG~il~~ll~g~~p~~~~~-----------~~~~~~~~~~~~~~~~-----------------~------~~~~~~~  265 (318)
T 3lxp_A          220 VWSFGVTLYELLTHCDSSQSPP-----------TKFLELIGIAQGQMTV-----------------L------RLTELLE  265 (318)
T ss_dssp             HHHHHHHHHHHHTTTCGGGSHH-----------HHHHHHHCSCCHHHHH-----------------H------HHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccccc-----------hhhhhhhcccccchhH-----------------H------HHHHHHh
Confidence            9999999999999999995211           0111111111000000                 0      000000 


Q ss_pred             -hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          425 -IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       425 -~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                       ......+...+..+.+||.+||+.||.+|||+.|+++
T Consensus       266 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~  303 (318)
T 3lxp_A          266 RGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIP  303 (318)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence             0112334566789999999999999999999999985

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=4.9e-41  Score=334.08  Aligned_cols=246  Identities=20%  Similarity=0.263  Sum_probs=192.9

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCC---CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .+|++.++||+|+||+||+|.+..+   ...||+|++....  .....+.+|+.+++++      .||||+++++++.. 
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~-   97 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF------SHPNVLSLLGICLR-   97 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTC------CCTTBCCCCEEECC-
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhC------CCCCEeeeeeEEEc-
Confidence            5799999999999999999987544   3569999887543  2346678999999998      78899999998654 


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        .....++||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.          
T Consensus        98 --~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~-~i~H~dikp~Nil~~~----------  163 (298)
T 3f66_A           98 --SEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLASK-KFVHRDLAARNCMLDE----------  163 (298)
T ss_dssp             --SSSCCEEEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECT----------
T ss_pred             --CCCceEEEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCchheEEECC----------
Confidence              346789999999 77999999642 34589999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (298)
T 3f66_A          164 --------------------------------------------------------------------------------  163 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-------ccCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-------QFTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-------~~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                ++.++|+|||++.....       ......||+.|+|||++.+..++.++||||
T Consensus       164 --------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  217 (298)
T 3f66_A          164 --------------------------KFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWS  217 (298)
T ss_dssp             --------------------------TCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHH
T ss_pred             --------------------------CCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHH
Confidence                                      45799999999965322       233456788999999999889999999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          349 FACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       349 lG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||++|+|++ |.+||.....      .+....+...                                         ..
T Consensus       218 lG~il~~l~~~~~~~~~~~~~------~~~~~~~~~~-----------------------------------------~~  250 (298)
T 3f66_A          218 FGVLLWELMTRGAPPYPDVNT------FDITVYLLQG-----------------------------------------RR  250 (298)
T ss_dssp             HHHHHHHHHTTSCCSSTTSCT------TTHHHHHHTT-----------------------------------------CC
T ss_pred             HHHHHHHHHhCCCCCCccCCH------HHHHHHHhcC-----------------------------------------CC
Confidence            9999999999 6677754331      1111111100                                         00


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ...+...++.+.+||.+||..||.+|||+.|+++
T Consensus       251 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~  284 (298)
T 3f66_A          251 LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS  284 (298)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            1123345678999999999999999999999986

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-40  Score=331.23  Aligned_cols=245  Identities=19%  Similarity=0.271  Sum_probs=193.3

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCC---eEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTS---HYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~---~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .|.+.++||+|+||+||+|.+..++   ..||+|++....  ...+.+.+|+.+++++      .||||+++++++... 
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~-   94 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGL------NHPNVLALIGIMLPP-   94 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTC------CCTTBCCCCEEECCS-
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhC------CCCCeeeEEEEEecC-
Confidence            6888899999999999999875544   489999987543  2346778999999998      788999999999753 


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ....++||||+ +++|.+++.. ....+++..+..++.||+.||+|||++ ||+||||||+|||++.           
T Consensus        95 --~~~~~~v~e~~~~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dikp~Nili~~-----------  159 (298)
T 3pls_A           95 --EGLPHVLLPYMCHGDLLQFIRS-PQRNPTVKDLISFGLQVARGMEYLAEQ-KFVHRDLAARNCMLDE-----------  159 (298)
T ss_dssp             --SSCCEEEECCCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECT-----------
T ss_pred             --CCCcEEEEecccCCCHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCcceEEEcC-----------
Confidence              24458999999 8999999864 234589999999999999999999997 9999999999999954           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (298)
T 3pls_A          160 --------------------------------------------------------------------------------  159 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-------cccCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-------KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-------~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                               ++.++|+|||++....       .......+|+.|+|||++.+..++.++|||||
T Consensus       160 -------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  214 (298)
T 3pls_A          160 -------------------------SFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSF  214 (298)
T ss_dssp             -------------------------TCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHH
T ss_pred             -------------------------CCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhH
Confidence                                     4579999999996432       12344567889999999999999999999999


Q ss_pred             HHHHHHHHhCC-CCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          350 ACICFELATGD-VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       350 G~il~elltG~-~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      ||++|+|++|. +||....      .......+...                                         ...
T Consensus       215 G~il~~l~~g~~~~~~~~~------~~~~~~~~~~~-----------------------------------------~~~  247 (298)
T 3pls_A          215 GVLLWELLTRGAPPYRHID------PFDLTHFLAQG-----------------------------------------RRL  247 (298)
T ss_dssp             HHHHHHHHHTSCCTTTTSC------GGGHHHHHHTT-----------------------------------------CCC
T ss_pred             HHHHHHHhhCCCCCCccCC------HHHHHHHhhcC-----------------------------------------CCC
Confidence            99999999955 4453222      11111111100                                         011


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ..+...++.+.+||.+||..||.+|||+.++++
T Consensus       248 ~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~  280 (298)
T 3pls_A          248 PQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVG  280 (298)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCccchHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            223445678999999999999999999999987

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=2.6e-41  Score=334.60  Aligned_cols=260  Identities=21%  Similarity=0.249  Sum_probs=191.3

Q ss_pred             CCcccccc-CcEeeCCCEEEEEEeccccceEEEEEEeCC-CC--eEEEEEEeccc----ccchHHHHHHHHHHHHhhcCC
Q 045988           28 GGYHAVRM-GDTFKNGRYVVQSKLGWGHFSTVWLAWDTQ-TS--HYVALKVQKSA----QHYTEAALDEIKILKQIAEGD   99 (530)
Q Consensus        28 ~~~~~~~~-g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~-~~--~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~   99 (530)
                      +|.+|... ...+..++|++.+.||+|+||+||+|.+.. ++  ..||||+++..    ....+.+.+|+++++++    
T Consensus         3 ~g~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l----   78 (291)
T 1u46_A            3 AGEGPLQSLTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL----   78 (291)
T ss_dssp             --------CCEECCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHC----
T ss_pred             CCCccccccccccchhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhC----
Confidence            45555433 345567899999999999999999998643 33  47999988753    23356778999999999    


Q ss_pred             CCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       100 ~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                        .||||+++++++...     ..++||||+ +++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||
T Consensus        79 --~h~~i~~~~~~~~~~-----~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp  149 (291)
T 1u46_A           79 --DHRNLIRLYGVVLTP-----PMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESK-RFIHRDLAA  149 (291)
T ss_dssp             --CCTTBCCEEEEECSS-----SCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCG
T ss_pred             --CCCCcccEEEEEccC-----CceeeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHHHhC-CcccCCCch
Confidence              788999999998842     388999999 889999987543 3489999999999999999999997 999999999


Q ss_pred             CcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 045988          179 ENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEP  258 (530)
Q Consensus       179 ~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (530)
                      +|||++.                                                                         
T Consensus       150 ~Nili~~-------------------------------------------------------------------------  156 (291)
T 1u46_A          150 RNLLLAT-------------------------------------------------------------------------  156 (291)
T ss_dssp             GGEEEEE-------------------------------------------------------------------------
T ss_pred             heEEEcC-------------------------------------------------------------------------
Confidence            9999966                                                                         


Q ss_pred             CCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCC
Q 045988          259 NGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCP  332 (530)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aP  332 (530)
                                                                 ++.++|+|||++......      .....+|+.|+||
T Consensus       157 -------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  193 (291)
T 1u46_A          157 -------------------------------------------RDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAP  193 (291)
T ss_dssp             -------------------------------------------TTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCH
T ss_pred             -------------------------------------------CCCEEEccccccccccccccchhhhccCCCCceeeCc
Confidence                                                       457999999999754322      2334678899999


Q ss_pred             hhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCcccc
Q 045988          333 EVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRH  411 (530)
Q Consensus       333 E~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  411 (530)
                      |++.+..++.++|||||||++|+|++ |..||....      ....+..+... +                         
T Consensus       194 E~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~~-~-------------------------  241 (291)
T 1u46_A          194 ESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN------GSQILHKIDKE-G-------------------------  241 (291)
T ss_dssp             HHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHTS-C-------------------------
T ss_pred             hhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCC------HHHHHHHHHcc-C-------------------------
Confidence            99998889999999999999999999 999996432      11111111100 0                         


Q ss_pred             chhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          412 IRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                    .....+...+..+.+||.+||..||.+|||+.+++++
T Consensus       242 --------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  278 (291)
T 1u46_A          242 --------------ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDF  278 (291)
T ss_dssp             --------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------CCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence                          0011233456889999999999999999999999973

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.2e-41  Score=345.68  Aligned_cols=247  Identities=20%  Similarity=0.278  Sum_probs=188.0

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCC---CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ..|.+.++||+|+||+||+|++..+   +..||+|+++...  ...+.+.+|+.+++++      .||||+++++++.. 
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~~~~~~~~-  161 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF------SHPNVLSLLGICLR-  161 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTC------CCTTBCCCCEEECC-
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhC------CCCCcceEEEEEEc-
Confidence            4689999999999999999987543   3578999887533  3356778899999888      78899999998653 


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        .....++||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.          
T Consensus       162 --~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~----------  227 (373)
T 3c1x_A          162 --SEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLASK-KFVHRDLAARNCMLDE----------  227 (373)
T ss_dssp             --CSSCCEEEEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT----------
T ss_pred             --CCCCeEEEEECCCCCCHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHHHC-CEecCccchheEEECC----------
Confidence              235789999999 88999999643 34488999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       228 --------------------------------------------------------------------------------  227 (373)
T 3c1x_A          228 --------------------------------------------------------------------------------  227 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                ++.+||+|||++......       .....+|+.|+|||++.+..++.++||||
T Consensus       228 --------------------------~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwS  281 (373)
T 3c1x_A          228 --------------------------KFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWS  281 (373)
T ss_dssp             --------------------------TCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHH
T ss_pred             --------------------------CCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHH
Confidence                                      467999999999753221       23345788999999999989999999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          349 FACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       349 lG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||++|+|++ |.+||......      +....+..  +.                                       .
T Consensus       282 lG~il~ellt~~~~p~~~~~~~------~~~~~~~~--~~---------------------------------------~  314 (373)
T 3c1x_A          282 FGVLLWELMTRGAPPYPDVNTF------DITVYLLQ--GR---------------------------------------R  314 (373)
T ss_dssp             HHHHHHHHHTTSCCSCTTSCSS------CHHHHHHT--TC---------------------------------------C
T ss_pred             HHHHHHHHHhCcCCCCCCCCHH------HHHHHHHc--CC---------------------------------------C
Confidence            9999999999 78888654321      11111110  00                                       0


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ...+...+..+.+||.+||..||.+|||+.|++++
T Consensus       315 ~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          315 LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            11233456789999999999999999999999874

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.1e-40  Score=333.01  Aligned_cols=256  Identities=24%  Similarity=0.345  Sum_probs=196.1

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .|...++||+|+||+||+|.+  +++.||+|++....     .....+.+|+.+++++      .||||+++++++.   
T Consensus        32 ~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~---  100 (307)
T 2nru_A           32 ISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKC------QHENLVELLGFSS---  100 (307)
T ss_dssp             TTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHC------CCTTBCCEEEEEC---
T ss_pred             ccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhc------CCCCeEEEEEEEe---
Confidence            344568999999999999975  68899999876532     2356788999999999      7888999999998   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYAD-YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~-~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                       .....++||||+ +++|.+++.... ...+++..+..++.||+.||.|||++ ||+||||||+|||++.          
T Consensus       101 -~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dlkp~Nili~~----------  168 (307)
T 2nru_A          101 -DGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN-HHIHRDIKSANILLDE----------  168 (307)
T ss_dssp             -SSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECT----------
T ss_pred             -cCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC-CeecCCCCHHHEEEcC----------
Confidence             446899999999 899999987543 34589999999999999999999997 9999999999999954          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (307)
T 2nru_A          169 --------------------------------------------------------------------------------  168 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                ++.++|+|||++......     .....||+.|+|||++.+ .++.++||||||
T Consensus       169 --------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG  221 (307)
T 2nru_A          169 --------------------------AFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFG  221 (307)
T ss_dssp             --------------------------TCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHH
T ss_pred             --------------------------CCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHH
Confidence                                      457999999998654321     234578999999999876 589999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh-hcc
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE-KYD  429 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  429 (530)
                      |++|+|++|.+||........   ...   +..........                            +...... ...
T Consensus       222 ~il~~l~~g~~p~~~~~~~~~---~~~---~~~~~~~~~~~----------------------------~~~~~~~~~~~  267 (307)
T 2nru_A          222 VVLLEIITGLPAVDEHREPQL---LLD---IKEEIEDEEKT----------------------------IEDYIDKKMND  267 (307)
T ss_dssp             HHHHHHHHCCCSBCTTBSSSB---TTH---HHHHHHTTSCC----------------------------HHHHSCSSCSC
T ss_pred             HHHHHHHHCCCCcccCcchHH---HHH---HHHHhhhhhhh----------------------------hhhhccccccc
Confidence            999999999999975442221   111   11110000000                            0000000 012


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      .+...+..+.+||.+||+.||.+|||+.+++++
T Consensus       268 ~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~  300 (307)
T 2nru_A          268 ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQL  300 (307)
T ss_dssp             CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            334567889999999999999999999999874

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=3e-40  Score=361.36  Aligned_cols=243  Identities=22%  Similarity=0.348  Sum_probs=192.5

Q ss_pred             CCEEEE-EEeccccceEEEEEEe--CCCCeEEEEEEeccccc---chHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           42 GRYVVQ-SKLGWGHFSTVWLAWD--TQTSHYVALKVQKSAQH---YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        42 ~~y~i~-~~LG~G~fg~Vy~a~~--~~~~~~vAiK~~~~~~~---~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ..+.+. ++||+|+||.||+|.+  ..+++.||||+++....   ..+.+.+|+++|++|      .|||||++++++..
T Consensus       368 ~~~~l~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~l~~~~~~  441 (635)
T 4fl3_A          368 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL------DNPYIVRMIGICEA  441 (635)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHC------CCTTBCCEEEEEES
T ss_pred             hhccccCCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEec
Confidence            345554 4899999999999954  56679999999876432   346789999999999      78899999999863


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                           ...+|||||| +++|.+++..  ...+++..+..|+.||+.||+|||++ |||||||||+||||+.         
T Consensus       442 -----~~~~lv~E~~~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~yLH~~-~iiHrDLkp~NILl~~---------  504 (635)
T 4fl3_A          442 -----ESWMLVMEMAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEES-NFVHRDLAARNVLLVT---------  504 (635)
T ss_dssp             -----SSEEEEEECCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE---------
T ss_pred             -----CCEEEEEEccCCCCHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHHHHC-CEeCCCCChHhEEEeC---------
Confidence                 3488999999 8999999964  34599999999999999999999997 9999999999999976         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       505 --------------------------------------------------------------------------------  504 (635)
T 4fl3_A          505 --------------------------------------------------------------------------------  504 (635)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                 ++.+||+|||++......      .....+|+.|+|||++.+..|+.++||||
T Consensus       505 ---------------------------~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwS  557 (635)
T 4fl3_A          505 ---------------------------QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWS  557 (635)
T ss_dssp             ---------------------------TTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHH
T ss_pred             ---------------------------CCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHH
Confidence                                       467999999999754321      23335678899999999989999999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          349 FACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       349 lG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||++|+|++ |..||.+..      .......+..  +                                       ..
T Consensus       558 lGv~l~ellt~G~~Pf~~~~------~~~~~~~i~~--~---------------------------------------~~  590 (635)
T 4fl3_A          558 FGVLMWEAFSYGQKPYRGMK------GSEVTAMLEK--G---------------------------------------ER  590 (635)
T ss_dssp             HHHHHHHHHTTTCCSSTTCC------HHHHHHHHHT--T---------------------------------------CC
T ss_pred             HHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C---------------------------------------CC
Confidence            9999999998 999996543      1111111110  0                                       01


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ...+..+++++.+||.+||..||.+||++.+|++
T Consensus       591 ~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~  624 (635)
T 4fl3_A          591 MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  624 (635)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            1234456789999999999999999999999975

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.4e-40  Score=359.08  Aligned_cols=256  Identities=20%  Similarity=0.350  Sum_probs=200.6

Q ss_pred             eeCCCEEEEE-EeccccceEEEEEEeC--CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           39 FKNGRYVVQS-KLGWGHFSTVWLAWDT--QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        39 ~~~~~y~i~~-~LG~G~fg~Vy~a~~~--~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      +..++|.+.+ +||+|+||.||+|.+.  .++..||||+++...  ...+.+.+|+++|+++      .|||||++++++
T Consensus       332 ~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l------~hpniv~l~~~~  405 (613)
T 2ozo_A          332 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL------DNPYIVRLIGVC  405 (613)
T ss_dssp             CCTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTC------CCTTBCCEEEEE
T ss_pred             ccccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhC------CCCCEeeEEEEe
Confidence            3456777777 8999999999999775  356789999987643  3457789999999998      788999999998


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      ..     ..+||||||| +++|.+++... ...+++..+..|+.||+.||+|||++ |||||||||+||||+.       
T Consensus       406 ~~-----~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~-~iiHrDlkp~NILl~~-------  471 (613)
T 2ozo_A          406 QA-----EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEK-NFVHRNLAARNVLLVN-------  471 (613)
T ss_dssp             ES-----SSEEEEEECCTTCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE-------
T ss_pred             cc-----CCeEEEEEeCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHC-CEEcCcCCHHHEEEcC-------
Confidence            73     3589999999 88999988643 34599999999999999999999997 9999999999999966       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       472 --------------------------------------------------------------------------------  471 (613)
T 2ozo_A          472 --------------------------------------------------------------------------------  471 (613)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                   ++.+||+|||++......      .....+|+.|+|||++.+..|+.++||
T Consensus       472 -----------------------------~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDv  522 (613)
T 2ozo_A          472 -----------------------------RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDV  522 (613)
T ss_dssp             -----------------------------TTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHH
T ss_pred             -----------------------------CCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHH
Confidence                                         567999999999754321      112245688999999998899999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          347 WSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       347 WSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      |||||++|||++ |..||.+..      ..+....+..  |                                       
T Consensus       523 wSlGv~l~ellt~G~~Pf~~~~------~~~~~~~i~~--~---------------------------------------  555 (613)
T 2ozo_A          523 WSYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--G---------------------------------------  555 (613)
T ss_dssp             HHHHHHHHHHHTTSCCTTTTCC------SHHHHHHHHT--T---------------------------------------
T ss_pred             HHHHHHHHHHHHCCCCCCCCCC------HHHHHHHHHc--C---------------------------------------
Confidence            999999999998 999997543      2222221110  0                                       


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHh---cCCCCCCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL---THPWINVGPR  470 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL---~hp~f~~~~~  470 (530)
                      .....+..+++++.+||.+||..||.+||++.+++   ++.|+.....
T Consensus       556 ~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~~  603 (613)
T 2ozo_A          556 KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASK  603 (613)
T ss_dssp             CCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhccc
Confidence            01123445678999999999999999999999874   4666654433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.4e-40  Score=368.06  Aligned_cols=251  Identities=22%  Similarity=0.308  Sum_probs=201.6

Q ss_pred             ccccCcEeeCCCEEEEEEeccccceEEEEEEeCC-CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           32 AVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQ-TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        32 ~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~-~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      ++..|+.+ .++|++.++||+|+||+||+|.+.. +++.||||++....  .....+.+|+.+|+++      .||||++
T Consensus        71 ~~~~g~~~-~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~  143 (681)
T 2pzi_A           71 QLNPGDIV-AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEV------VHPSIVQ  143 (681)
T ss_dssp             SSCTTCEE-TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGC------CCTTBCC
T ss_pred             CCCCCCEe-CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhc------CCCCcCe
Confidence            46788888 7899999999999999999999976 79999999886532  3345678899999888      7899999


Q ss_pred             ecceeeecCCCC-cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeec
Q 045988          109 LLDHFKHSGPNG-QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM  186 (530)
Q Consensus       109 ~~~~~~~~~~~~-~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~  186 (530)
                      ++++|...+..+ ...||||||+ +++|.+++..    .+++..+..|+.||+.||.|||++ |||||||||+|||++. 
T Consensus       144 ~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~-giiHrDlkp~NIll~~-  217 (681)
T 2pzi_A          144 IFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSI-GLVYNDLKPENIMLTE-  217 (681)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECS-
T ss_pred             EeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC-CCeecccChHHeEEeC-
Confidence            999998764322 2379999999 8898877642    599999999999999999999997 9999999999999943 


Q ss_pred             cCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc
Q 045988          187 IDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQ  266 (530)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (530)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (681)
T 2pzi_A          218 --------------------------------------------------------------------------------  217 (681)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          267 QNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                          ..+||+|||++...... ...+||+.|+|||++.+. ++.++||
T Consensus       218 ------------------------------------~~~kl~DFG~a~~~~~~-~~~~gt~~y~aPE~~~~~-~~~~sDi  259 (681)
T 2pzi_A          218 ------------------------------------EQLKLIDLGAVSRINSF-GYLYGTPGFQAPEIVRTG-PTVATDI  259 (681)
T ss_dssp             ------------------------------------SCEEECCCTTCEETTCC-SCCCCCTTTSCTTHHHHC-SCHHHHH
T ss_pred             ------------------------------------CcEEEEecccchhcccC-CccCCCccccCHHHHcCC-CCCceeh
Confidence                                                25899999999765433 566899999999999764 4889999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|.+||.+......                 +.                             ..     
T Consensus       260 ~slG~~l~~l~~g~~~~~~~~~~~~-----------------~~-----------------------------~~-----  288 (681)
T 2pzi_A          260 YTVGRTLAALTLDLPTRNGRYVDGL-----------------PE-----------------------------DD-----  288 (681)
T ss_dssp             HHHHHHHHHHHSCCCEETTEECSSC-----------------CT-----------------------------TC-----
T ss_pred             hhhHHHHHHHHhCCCCCcccccccc-----------------cc-----------------------------cc-----
Confidence            9999999999999999853211100                 00                             00     


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                         .....++.+.+||.+||+.||.+||++.++|.|+|+..
T Consensus       289 ---~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~  326 (681)
T 2pzi_A          289 ---PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGV  326 (681)
T ss_dssp             ---HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             ---cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence               00123467899999999999999999999999999853

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=1.4e-39  Score=322.28  Aligned_cols=140  Identities=21%  Similarity=0.196  Sum_probs=122.1

Q ss_pred             cccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccc----hHHHHHHHHHHHHhhcCCCCCCcce
Q 045988           31 HAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHY----TEAALDEIKILKQIAEGDPDDKKCV  106 (530)
Q Consensus        31 ~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~----~~~~~~Ei~il~~l~~~~~~~h~~I  106 (530)
                      .++..|+.+..++|++.+.||+|+||.||+|++..+++.||||++......    ...+.+|+.++.++      .||||
T Consensus        20 ~~~~~g~~~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l------~hp~i   93 (286)
T 3uqc_A           20 VQLVPGARIANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRI------DKPGV   93 (286)
T ss_dssp             CCCCTTCEETTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTC------CCTTB
T ss_pred             CcCCCCCEEecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcC------CCCCc
Confidence            356889966689999999999999999999999999999999998865332    36788899999888      78899


Q ss_pred             eEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEee
Q 045988          107 VKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS  185 (530)
Q Consensus       107 v~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~  185 (530)
                      +++++++..    ....||||||+ +++|.+++..    +....++..|+.||+.||+|||++ ||+||||||+|||++.
T Consensus        94 v~~~~~~~~----~~~~~lv~e~~~g~~L~~~l~~----~~~~~~~~~i~~ql~~aL~~lH~~-givH~Dikp~NIll~~  164 (286)
T 3uqc_A           94 ARVLDVVHT----RAGGLVVAEWIRGGSLQEVADT----SPSPVGAIRAMQSLAAAADAAHRA-GVALSIDHPSRVRVSI  164 (286)
T ss_dssp             CCEEEEEEE----TTEEEEEEECCCEEEHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEEET
T ss_pred             ceeeEEEEE----CCcEEEEEEecCCCCHHHHHhc----CCChHHHHHHHHHHHHHHHHHHHC-CCccCCCCcccEEEcC
Confidence            999999984    47899999999 8899999842    246667899999999999999997 9999999999999965

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=3e-39  Score=354.69  Aligned_cols=246  Identities=19%  Similarity=0.301  Sum_probs=197.1

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCC---CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      ..++|++.+.||+|+||+||+|.+..+   +..||||+++...  ...+.+.+|+.+|+++      .||||+++++++.
T Consensus       388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~l~~~~~  461 (656)
T 2j0j_A          388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQF------DHPHIVKLIGVIT  461 (656)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEC
T ss_pred             ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEe
Confidence            457899999999999999999998653   5789999877532  3346788999999999      7889999999885


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .     ...|+||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.        
T Consensus       462 ~-----~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDikp~NILl~~--------  526 (656)
T 2j0j_A          462 E-----NPVWIIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAYLESK-RFVHRDIAARNVLVSS--------  526 (656)
T ss_dssp             S-----SSCEEEEECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE--------
T ss_pred             c-----CceEEEEEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CccccccchHhEEEeC--------
Confidence            2     3589999999 899999987533 3489999999999999999999997 9999999999999966        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       527 --------------------------------------------------------------------------------  526 (656)
T 2j0j_A          527 --------------------------------------------------------------------------------  526 (656)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSF  349 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSl  349 (530)
                                                  ++.+||+|||++......    .....+|+.|+|||++.+..++.++|||||
T Consensus       527 ----------------------------~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSl  578 (656)
T 2j0j_A          527 ----------------------------NDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMF  578 (656)
T ss_dssp             ----------------------------TTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             ----------------------------CCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHH
Confidence                                        467999999999764322    223456789999999998899999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhc
Q 045988          350 ACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKY  428 (530)
Q Consensus       350 G~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (530)
                      ||++|+|++ |.+||.+..      ..+.+..+...                                         ...
T Consensus       579 G~il~ellt~g~~Pf~~~~------~~~~~~~i~~~-----------------------------------------~~~  611 (656)
T 2j0j_A          579 GVCMWEILMHGVKPFQGVK------NNDVIGRIENG-----------------------------------------ERL  611 (656)
T ss_dssp             HHHHHHHHTTSCCTTTTCC------HHHHHHHHHHT-----------------------------------------CCC
T ss_pred             HHHHHHHHHcCCCCCCCCC------HHHHHHHHHcC-----------------------------------------CCC
Confidence            999999997 999996433      12222221110                                         011


Q ss_pred             cCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          429 DFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       429 ~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      ..+...++.+.+||.+||..||.+|||+.++++
T Consensus       612 ~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~  644 (656)
T 2j0j_A          612 PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKA  644 (656)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            234456788999999999999999999999986

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=327.05  Aligned_cols=244  Identities=21%  Similarity=0.287  Sum_probs=189.5

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      ..++|++.+.||+|+||.||+|.+..   .||+|+++...   .....+.+|+.+++++      .||||+++++++.. 
T Consensus        31 ~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~-  100 (319)
T 2y4i_B           31 PFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQT------RHENVVLFMGACMS-  100 (319)
T ss_dssp             CCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTC------CCTTBCCCCEEEEC-
T ss_pred             CHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcC------CCCCEeEEEEEEec-
Confidence            35789999999999999999998754   39999887542   2335567899999888      78899999999984 


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                         ...+++||||+ +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||++.          
T Consensus       101 ---~~~~~iv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~-~i~H~dlkp~NIl~~~----------  165 (319)
T 2y4i_B          101 ---PPHLAIITSLCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLHAK-GILHKDLKSKNVFYDN----------  165 (319)
T ss_dssp             ---SSCEEEECBCCCSEEHHHHTTSS-CCCCCSHHHHHHHHHHHHHHHHHHHT-TCCCCCCCSTTEEEC-----------
T ss_pred             ---CCceEEEeecccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCChhhEEEeC----------
Confidence               46799999999 88999998643 23589999999999999999999997 9999999999999942          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (319)
T 2y4i_B          166 --------------------------------------------------------------------------------  165 (319)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--------cccCCCCCCCCccCChhhcC---------C
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--------KQFTNDIQTRQYRCPEVLLG---------S  338 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--------~~~~~~~gt~~y~aPE~l~~---------~  338 (530)
                                                 +.++|+|||++....        .......||+.|+|||++.+         .
T Consensus       166 ---------------------------~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~  218 (319)
T 2y4i_B          166 ---------------------------GKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKL  218 (319)
T ss_dssp             ----------------------------CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCS
T ss_pred             ---------------------------CCEEEeecCCccccccccccccccccccCCCcccccChHHhhhcccccccccc
Confidence                                       358999999976432        12334568999999999974         3


Q ss_pred             CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccC
Q 045988          339 KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (530)
                      .++.++|||||||++|+|++|..||....      .......+.  .+..+.                            
T Consensus       219 ~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~--~~~~~~----------------------------  262 (319)
T 2y4i_B          219 PFSKHSDVFALGTIWYELHAREWPFKTQP------AEAIIWQMG--TGMKPN----------------------------  262 (319)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSSSCC------HHHHHHHHH--TTCCCC----------------------------
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHhc--cCCCCC----------------------------
Confidence            47889999999999999999999996432      111111110  000000                            


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                ......+..+.+||.+||..||.+|||+.++++
T Consensus       263 ----------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  295 (319)
T 2y4i_B          263 ----------LSQIGMGKEISDILLFCWAFEQEERPTFTKLMD  295 (319)
T ss_dssp             ----------CCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHH
T ss_pred             ----------CCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                      011134567899999999999999999999998

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.97  E-value=5.9e-33  Score=299.49  Aligned_cols=185  Identities=22%  Similarity=0.124  Sum_probs=130.1

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEeccc-----------ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-----------QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-----------~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ...++.|++|.+..++....|+.||+|++.+.           ....+.+.+|+++|+++.     .|+||++++++++ 
T Consensus       239 ~~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~~~~i~~~~~~~e-  312 (569)
T 4azs_A          239 QNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPP-----AGFDAPAVLAHGE-  312 (569)
T ss_dssp             ECC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCC-----TTCCCCCEEEEEE-
T ss_pred             hhccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcC-----CCCCeeEEEEEEE-
Confidence            34577888888888888889999999998653           123456889999999984     6899999999999 


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         ++..+||||||| |++|.+++...  ..+++.   .|+.||+.||+|||++ |||||||||+||||+.         
T Consensus       313 ---d~~~~yLVMEyv~G~~L~d~i~~~--~~l~~~---~I~~QIl~AL~ylH~~-GIIHRDIKPeNILL~~---------  374 (569)
T 4azs_A          313 ---NAQSGWLVMEKLPGRLLSDMLAAG--EEIDRE---KILGSLLRSLAALEKQ-GFWHDDVRPWNVMVDA---------  374 (569)
T ss_dssp             ---CSSEEEEEEECCCSEEHHHHHHTT--CCCCHH---HHHHHHHHHHHHHHHT-TCEESCCCGGGEEECT---------
T ss_pred             ---ECCEEEEEEecCCCCcHHHHHHhC--CCCCHH---HHHHHHHHHHHHHHHC-CceeccCchHhEEECC---------
Confidence               557999999999 99999999743  346654   5899999999999997 9999999999999965         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       375 --------------------------------------------------------------------------------  374 (569)
T 4azs_A          375 --------------------------------------------------------------------------------  374 (569)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCCCCCcchhHHHHH
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSKYSTPADLWSFAC  351 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~  351 (530)
                                                 ++.+||+|||+|+.....   ..+.+||+.|+|||++.+ .+..++|+||+|+
T Consensus       375 ---------------------------dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~  426 (569)
T 4azs_A          375 ---------------------------RQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPV  426 (569)
T ss_dssp             ---------------------------TSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC----------------
T ss_pred             ---------------------------CCCEEEeecccCeeCCCCCccccCceechhhccHHHhCC-CCCCccccccccc
Confidence                                       567999999999764332   344579999999999977 4677899999999


Q ss_pred             HHHHHHhCCCCC
Q 045988          352 ICFELATGDVLF  363 (530)
Q Consensus       352 il~elltG~~PF  363 (530)
                      ++|+|.++..+|
T Consensus       427 ~~~~l~~~~~~~  438 (569)
T 4azs_A          427 HPFNLPQPWSNW  438 (569)
T ss_dssp             --CCCCTTHHHH
T ss_pred             chhhhccccchh
Confidence            998887765444

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.93  E-value=1.4e-26  Score=248.24  Aligned_cols=178  Identities=15%  Similarity=0.173  Sum_probs=134.9

Q ss_pred             EEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---------cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           45 VVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        45 ~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      ...++||+|+||+||+|  ...+..+|+|......         ...+.+.+|+++|+++      .||||+++..++..
T Consensus       339 ~~~~~LG~G~fg~Vy~~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l------~h~nIv~~~~~~~~  410 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRD--SYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALV------KDFGIPAPYIFDVD  410 (540)
T ss_dssp             ---------CCEEEEEE--ECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHG------GGGTCCCCCEEEEE
T ss_pred             CCCCEEeeCCCEEEEEE--EECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhc------CCCCcCceEEEEEe
Confidence            45679999999999999  4557888999754321         1134578999999999      67889944444432


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                          ....||||||| +++|.+++..          +..|+.||+.||+|||++ ||+||||||+|||++          
T Consensus       411 ----~~~~~lVmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~-gIiHrDiKp~NILl~----------  465 (540)
T 3en9_A          411 ----LDNKRIMMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKN-DVIHNDLTTSNFIFD----------  465 (540)
T ss_dssp             ----TTTTEEEEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHT-TEECTTCCTTSEEES----------
T ss_pred             ----CCccEEEEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHC-cCccCCCCHHHEEEC----------
Confidence                24569999999 8999998853          568999999999999997 999999999999992          


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       466 --------------------------------------------------------------------------------  465 (540)
T 3en9_A          466 --------------------------------------------------------------------------------  465 (540)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----------cCCCCCCCCccCChhhcC--CCCCC
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----------FTNDIQTRQYRCPEVLLG--SKYST  342 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----------~~~~~gt~~y~aPE~l~~--~~~~~  342 (530)
                                                 . .+||+|||+|+.....          ....+||+.|+|||++..  ..|+.
T Consensus       466 ---------------------------~-~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~  517 (540)
T 3en9_A          466 ---------------------------K-DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKS  517 (540)
T ss_dssp             ---------------------------S-SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             ---------------------------C-eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHH
Confidence                                       2 5899999999765432          135579999999999986  56888


Q ss_pred             cchhHHHHHHHHHHHhCCCCC
Q 045988          343 PADLWSFACICFELATGDVLF  363 (530)
Q Consensus       343 ~~DiWSlG~il~elltG~~PF  363 (530)
                      .+|+||..+-..+.+.++.+|
T Consensus       518 ~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          518 VYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HCTTHHHHHHHHHHHHTCSCC
T ss_pred             HHhHHHHHHHHHHHHHhcccc
Confidence            899999999888888877666

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.90  E-value=4.4e-24  Score=210.28  Aligned_cols=117  Identities=18%  Similarity=0.279  Sum_probs=92.1

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-------------------chHHHHHHHHHHHHhhcCCCCCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-------------------YTEAALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-------------------~~~~~~~Ei~il~~l~~~~~~~h  103 (530)
                      .|.+.+.||+|+||.||+|.+ .+|+.||||+++....                   ....+.+|+.+|+++.       
T Consensus        91 ~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-------  162 (282)
T 1zar_A           91 VDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-------  162 (282)
T ss_dssp             CSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-------
T ss_pred             EEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-------
Confidence            355669999999999999999 8899999999864321                   2456789999999994       


Q ss_pred             cceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEE
Q 045988          104 KCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NIL  182 (530)
                       | +++++++..     ...|+||||+ +++|.+ +.        ......++.||+.||.|||++ ||+||||||+|||
T Consensus       163 -~-~~v~~~~~~-----~~~~lvmE~~~g~~L~~-l~--------~~~~~~i~~qi~~~l~~lH~~-giiHrDlkp~NIL  225 (282)
T 1zar_A          163 -G-LAVPKVYAW-----EGNAVLMELIDAKELYR-VR--------VENPDEVLDMILEEVAKFYHR-GIVHGDLSQYNVL  225 (282)
T ss_dssp             -T-SSSCCEEEE-----ETTEEEEECCCCEEGGG-CC--------CSCHHHHHHHHHHHHHHHHHT-TEECSCCSTTSEE
T ss_pred             -C-CCcCeEEec-----cceEEEEEecCCCcHHH-cc--------hhhHHHHHHHHHHHHHHHHHC-CCEeCCCCHHHEE
Confidence             3 444554432     3569999999 778876 31        123567999999999999997 9999999999999


Q ss_pred             Ee
Q 045988          183 LM  184 (530)
Q Consensus       183 l~  184 (530)
                      ++
T Consensus       226 l~  227 (282)
T 1zar_A          226 VS  227 (282)
T ss_dssp             EE
T ss_pred             EE
Confidence            95

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.83  E-value=1.1e-20  Score=183.55  Aligned_cols=123  Identities=16%  Similarity=0.181  Sum_probs=94.4

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeE--EEEEEecccccc-------------------------hHHHHHHHHHHHHh
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHY--VALKVQKSAQHY-------------------------TEAALDEIKILKQI   95 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~--vAiK~~~~~~~~-------------------------~~~~~~Ei~il~~l   95 (530)
                      -|.+.+.||+|+||.||+|.+..+|+.  ||||+++.....                         ...+.+|+.+|.+|
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999998788999  999987543211                         12578899999999


Q ss_pred             hcCCCCCCcceeEecceeeecCCCCcEEEEEEeccCc------CHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH-hh
Q 045988           96 AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGE------NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLH-RE  168 (530)
Q Consensus        96 ~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~~------~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH-~~  168 (530)
                      .+.+. .+|.++   +.        ...+|||||+++      .|.++...     .++..+..++.||+.||.||| +.
T Consensus       128 ~~~~i-~~p~~~---~~--------~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~  190 (258)
T 1zth_A          128 KEAGV-SVPQPY---TY--------MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEA  190 (258)
T ss_dssp             HHTTC-CCCCEE---EE--------ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTS
T ss_pred             HhCCC-CCCeEE---Ec--------CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHC
Confidence            87642 333333   21        246899999953      66665421     234568899999999999999 86


Q ss_pred             CCceeccCCCCcEEE
Q 045988          169 LSIIHTDLKPENVLL  183 (530)
Q Consensus       169 ~gIvHrDIKp~NILl  183 (530)
                       |||||||||+|||+
T Consensus       191 -givHrDlkp~NILl  204 (258)
T 1zth_A          191 -ELVHADLSEYNIMY  204 (258)
T ss_dssp             -CEECSSCSTTSEEE
T ss_pred             -CEEeCCCCHHHEEE
Confidence             99999999999999

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.72  E-value=6.6e-18  Score=171.13  Aligned_cols=122  Identities=19%  Similarity=0.258  Sum_probs=86.3

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc---------------chH--------HHHHHHHHHHHhhcCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH---------------YTE--------AALDEIKILKQIAEGD   99 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~---------------~~~--------~~~~Ei~il~~l~~~~   99 (530)
                      -|.+.++||+|+||.||+|.+. +|+.||||+++....               ...        ...+|...|.+|.+..
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g  174 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG  174 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4999999999999999999874 699999998764211               001        1235677777775432


Q ss_pred             CCCCcceeEecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       100 ~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                      .    .+...++.        ...+|||||+ |..|..+.        .......++.||+.||.+||++ |||||||||
T Consensus       175 v----~vp~p~~~--------~~~~LVME~i~G~~L~~l~--------~~~~~~~l~~qll~~l~~lH~~-gIVHrDLKp  233 (397)
T 4gyi_A          175 F----PVPEPIAQ--------SRHTIVMSLVDALPMRQVS--------SVPDPASLYADLIALILRLAKH-GLIHGDFNE  233 (397)
T ss_dssp             C----SCCCEEEE--------ETTEEEEECCSCEEGGGCC--------CCSCHHHHHHHHHHHHHHHHHT-TEECSCCST
T ss_pred             C----CCCeeeec--------cCceEEEEecCCccHhhhc--------ccHHHHHHHHHHHHHHHHHHHC-CCcCCCCCH
Confidence            1    01111211        1237999999 66664322        2234567899999999999996 999999999


Q ss_pred             CcEEEeec
Q 045988          179 ENVLLMSM  186 (530)
Q Consensus       179 ~NILl~~~  186 (530)
                      .|||+...
T Consensus       234 ~NILl~~d  241 (397)
T 4gyi_A          234 FNILIREE  241 (397)
T ss_dssp             TSEEEEEE
T ss_pred             HHEEEeCC
Confidence            99999774

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.29  E-value=1.2e-11  Score=119.53  Aligned_cols=108  Identities=14%  Similarity=0.013  Sum_probs=81.2

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      +.|.+...++.|+++.||++..  .+..+++|+..... .....+.+|+.+|+.|..     +..+.++++++..    .
T Consensus        14 ~~~~~~~~~~g~s~~~v~~~~~--~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~-----~~~vP~v~~~~~~----~   82 (263)
T 3tm0_A           14 EKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEG-----KLPVPKVLHFERH----D   82 (263)
T ss_dssp             TTSEEEECCSCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTT-----TSCCCCEEEEEEE----T
T ss_pred             ccceeEeeccCCCCCeEEEEEC--CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhc-----CCCCCeEEEEEec----C
Confidence            5699999999999999999964  36789999876531 224468899999999963     3346677777663    3


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR  167 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~  167 (530)
                      ...|+||||+ |.+|.+.+       .+......++.++..+|..||+
T Consensus        83 ~~~~lv~e~i~G~~l~~~~-------~~~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           83 GWSNLLMSEADGVLCSEEY-------EDEQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             TEEEEEEECCSSEEHHHHC-------CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEecCCeehhhcc-------CCcccHHHHHHHHHHHHHHHhC
Confidence            6789999999 77776542       1122345788899999999998

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.09  E-value=3.4e-10  Score=108.84  Aligned_cols=111  Identities=14%  Similarity=0.047  Sum_probs=72.9

Q ss_pred             ccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           34 RMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        34 ~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .+.+.+  ..|.+....+.|..+.||++.. .+|..|++|+....  ....+.+|+.+++.|.+..    -.+.+++.+.
T Consensus        14 ~l~~~~--~~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~--~~~~~~~E~~~l~~l~~~~----~~vP~~~~~~   84 (264)
T 1nd4_A           14 AWVERL--FGYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG--ALNELQDEAARLSWLATTG----VPCAAVLDVV   84 (264)
T ss_dssp             GGTTTT--TTCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC--TTSCHHHHHHHHHHHHTTT----CCBCCEEEEE
T ss_pred             HHHHhc--CCCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc--cchhhhHHHHHHHHHHhCC----CCCCeEEEec
Confidence            344433  4566655545666799999964 56778999987654  2356789999999997532    1155566666


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR  167 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~  167 (530)
                      ..    +...++||||+ |.+| . ..   .  ..   ...++.++..+|..||+
T Consensus        85 ~~----~~~~~~v~e~i~G~~l-~-~~---~--~~---~~~~~~~l~~~l~~lh~  125 (264)
T 1nd4_A           85 TE----AGRDWLLLGEVPGQDL-L-SS---H--LA---PAEKVSIMADAMRRLHT  125 (264)
T ss_dssp             EC----SSCEEEEEECCSSEET-T-TS---C--CC---HHHHHHHHHHHHHHHTT
T ss_pred             cC----CCCCEEEEEecCCccc-C-cC---c--CC---HhHHHHHHHHHHHHHhC
Confidence            53    35689999999 6665 2 11   1  12   23567777788888886

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.95  E-value=2e-09  Score=109.07  Aligned_cols=111  Identities=11%  Similarity=0.130  Sum_probs=75.9

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEec--ccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCc
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQK--SAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQ  121 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~--~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~  121 (530)
                      -++.|+.|.++.||++...  +..+++|+..  ...  .....+.+|..+++.|...    +..+.+++.++.... ...
T Consensus        42 ~~~~l~~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~----~vpvP~~~~~~~~~~-~~g  114 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTP--GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGT----DVPVAKMYALCEDES-VIG  114 (359)
T ss_dssp             EEEECCC-CCSCEEEEECS--SCEEEEECCCC----------CHHHHHHHHHHHTTS----SSCCCCEEEEECCTT-TTS
T ss_pred             eEEEcCCcccceEEEEEEC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcC----CCCCCcEEEECCCCC-ccC
Confidence            4788999999999999743  4678888776  332  2245678899999999752    234667777665431 113


Q ss_pred             EEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 045988          122 HVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR  167 (530)
Q Consensus       122 ~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~  167 (530)
                      ..|+||||+ |..+.+.    ....++......++.+++.+|+.||+
T Consensus       115 ~~~~vme~v~G~~l~~~----~~~~l~~~~~~~~~~~l~~~La~LH~  157 (359)
T 3dxp_A          115 RAFYIMEFVSGRVLWDQ----SLPGMSPAERTAIYDEMNRVIAAMHT  157 (359)
T ss_dssp             SCEEEEECCCCBCCCCT----TCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEecCCeecCCC----ccccCCHHHHHHHHHHHHHHHHHHhC
Confidence            578999999 5554321    12347788889999999999999997

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.81  E-value=3.4e-09  Score=104.78  Aligned_cols=107  Identities=19%  Similarity=0.134  Sum_probs=70.3

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV  126 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lV  126 (530)
                      ++.++.|.+..||++.     ..+++|+.... .....+.+|..+|+.|........|   +++...... ......|+|
T Consensus        25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~-~~~~~~~~E~~~l~~l~~~~~v~vP---~~~~~~~~~-~~~~~~~~v   94 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS-RGSTNLFNEVNILKRIHNKLPLPIP---EVVFTGMPS-ETYQMSFAG   94 (304)
T ss_dssp             CCEEEECSSEEEEEST-----TSEEEEEESSH-HHHHHHHHHHHHHHHHTTSSSSCCC---CEEEECCCC-SSCSCSCEE
T ss_pred             eEecCCCCcceEEEEC-----CEEEEEecCCc-chHHHHHHHHHHHHHHHhcCCCCCC---ceEeecCCC-CCCCcceEE
Confidence            3458999999999973     35889986543 3356788999999998543222223   333222211 011245889


Q ss_pred             Eecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 045988          127 FEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR  167 (530)
Q Consensus       127 mE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~  167 (530)
                      |+++ |..|.....    ..++..+...++.|+...|+.||+
T Consensus        95 m~~i~G~~l~~~~~----~~l~~~~~~~~~~~l~~~la~LH~  132 (304)
T 3sg8_A           95 FTKIKGVPLTPLLL----NNLPKQSQNQAAKDLARFLSELHS  132 (304)
T ss_dssp             EECCCCEECCHHHH----HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcccCCeECCcccc----ccCCHHHHHHHHHHHHHHHHHHHc
Confidence            9999 666654321    237788888888999999988885

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.34  E-value=4.4e-06  Score=80.51  Aligned_cols=102  Identities=14%  Similarity=0.140  Sum_probs=67.6

Q ss_pred             Eeccccce-EEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEE
Q 045988           49 KLGWGHFS-TVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVF  127 (530)
Q Consensus        49 ~LG~G~fg-~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVm  127 (530)
                      .+..|..+ .||+......+..+.+|+.....  ...+.+|..+|+.|...-     -|.+++.+..+    ....++||
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~~--~~~~~~E~~~l~~l~~~v-----PVP~v~~~~~~----~~~~~lvm   99 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGSV--ANDVTDEMVRLNWLTAFM-----PLPTIKHFIRT----PDDAWLLT   99 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETHH--HHHHHHHHHHHHHHTTTS-----CCCCEEEEEEE----TTEEEEEE
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCCC--HhHHHHHHHHHHHhccCC-----CcCeEEEEEEE----CCeEEEEE
Confidence            44555554 79998877778889999866542  456788999999996421     25666666663    35789999


Q ss_pred             ecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 045988          128 EYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR  167 (530)
Q Consensus       128 E~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~  167 (530)
                      |++ |.++.+.....      ......++.++...|..||+
T Consensus       100 e~l~G~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~  134 (272)
T 4gkh_A          100 TAIPGKTAFQVLEEY------PDSGENIVDALAVFLRRLHS  134 (272)
T ss_dssp             ECCCSEEHHHHHHHC------GGGHHHHHHHHHHHHHHHHT
T ss_pred             EeeCCccccccccCC------HHHHHHHHHHHHHHHHHhcC
Confidence            999 66766654321      12234456666666666664

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.29  E-value=6.9e-06  Score=80.95  Aligned_cols=105  Identities=14%  Similarity=0.097  Sum_probs=65.0

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV  126 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lV  126 (530)
                      ++.++.|....||+.     +..+++|+... ......+.+|..+|+.|.+.....   |.+++.+...   .....++|
T Consensus        24 v~~l~~G~~n~v~~v-----g~~~VlR~~~~-~~~~~~~~~E~~~L~~L~~~~~v~---VP~~~~~~~~---~~g~~~~v   91 (306)
T 3tdw_A           24 VESLGEGFRNYAILV-----NGDWVFRFPKS-QQGADELNKEIQLLPLLVGCVKVN---IPQYVYIGKR---SDGNPFVG   91 (306)
T ss_dssp             EEEEEECSSEEEEEE-----TTTEEEEEESS-HHHHHHHHHHHHHHHHHTTTCSSB---CCCEEEEEEC---TTSCEEEE
T ss_pred             eeecCCCcceeEEEE-----CCEEEEEecCC-chHHHHHHHHHHHHHHHHhcCCCC---CCCeEeeccc---CCCceEEE
Confidence            456788999999998     45688888543 233567889999999997532111   3344444331   23456899


Q ss_pred             Eecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 045988          127 FEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR  167 (530)
Q Consensus       127 mE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~  167 (530)
                      ||++ |..+....    ...++......++.++...|+.||+
T Consensus        92 ~e~i~G~~l~~~~----~~~l~~~~~~~~~~~lg~~La~LH~  129 (306)
T 3tdw_A           92 YRKVQGQILGEDG----MAVLPDDAKDRLALQLAEFMNELSA  129 (306)
T ss_dssp             EECCCSEECHHHH----HTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCeECchhh----hhhCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999 66665421    1124455555555555555555553

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.06  E-value=1.8e-05  Score=80.98  Aligned_cols=78  Identities=17%  Similarity=0.160  Sum_probs=49.3

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEecccc--------cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      -.+.||.|.++.||++....+++.|+||......        ........|.++|+.+....   ...+.+++.+  +  
T Consensus        34 ~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~---~~~vP~~~~~--d--  106 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHV---PHLVPRVFYS--D--  106 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTC---GGGSCCEEEE--E--
T ss_pred             EEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhC---CCCcCeEEEE--c--
Confidence            4678999999999999766667889999754321        12345678999999986431   1123344432  1  


Q ss_pred             CCCcEEEEEEeccCc
Q 045988          118 PNGQHVCMVFEYLGE  132 (530)
Q Consensus       118 ~~~~~~~lVmE~~~~  132 (530)
                        ....++|||++.+
T Consensus       107 --~~~~~lvmE~l~g  119 (397)
T 2olc_A          107 --TEMAVTVMEDLSH  119 (397)
T ss_dssp             --TTTTEEEECCCTT
T ss_pred             --CCccEEEEEeCCC
Confidence              1235799999943

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.93  E-value=2e-05  Score=79.17  Aligned_cols=85  Identities=14%  Similarity=0.071  Sum_probs=54.0

Q ss_pred             EEEEEe-ccccceEEEEEEeC--C----CCeEEEEEEecccc---c-chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           45 VVQSKL-GWGHFSTVWLAWDT--Q----TSHYVALKVQKSAQ---H-YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        45 ~i~~~L-G~G~fg~Vy~a~~~--~----~~~~vAiK~~~~~~---~-~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      ...+.| +.|....+|++...  .    ++..+++|+.....   . ....+.+|..+|+.|.....   ..+.+++.+.
T Consensus        23 ~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~---vpvP~v~~~~   99 (357)
T 3ats_A           23 TVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTD---VPVPRVRWIE   99 (357)
T ss_dssp             EEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCC---SCCCCEEEEE
T ss_pred             EEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCC---CCCCcEEEEc
Confidence            446788 88999999998643  1    26788999866533   1 13567889999999975311   1255555554


Q ss_pred             eecCCCCcEEEEEEecc-CcC
Q 045988          114 KHSGPNGQHVCMVFEYL-GEN  133 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~  133 (530)
                      .... .....|+|||++ |..
T Consensus       100 ~~~~-~~g~~~~v~e~l~G~~  119 (357)
T 3ats_A          100 TTGD-VLGTPFFLMDYVEGVV  119 (357)
T ss_dssp             CSST-TTSSCEEEEECCCCBC
T ss_pred             cCCC-ccCCceEEEEecCCCC
Confidence            4221 113468999999 544

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.87  E-value=0.00017  Score=71.55  Aligned_cols=76  Identities=16%  Similarity=0.226  Sum_probs=43.3

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecc--eeeecCCCCcEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD--HFKHSGPNGQHVC  124 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~--~~~~~~~~~~~~~  124 (530)
                      ++.|+.|..+.||++...  +..+++|+....   ......|..+++.|..... ..|.++...+  .+..   .....+
T Consensus        37 ~~~l~gG~~n~~~~v~~~--~~~~vlk~~~~~---~~~~~~e~~~l~~L~~~g~-~vp~~~~~~~g~~~~~---~~~~~~  107 (346)
T 2q83_A           37 IDVIQGNQMALVWKVHTD--SGAVCLKRIHRP---EKKALFSIFAQDYLAKKGM-NVPGILPNKKGSLYSK---HGSFLF  107 (346)
T ss_dssp             EEECC----CEEEEEEET--TEEEEEEEECSC---HHHHHHHHHHHHHHHHHTC-SSCCBCCCTTSCSCEE---ETTEEE
T ss_pred             eeeccccccCcEEEEEeC--CCCEEEEecCCC---HHHHHHHHHHHHHHHHcCC-CCCceeecCCCCEEEE---ECCEEE
Confidence            456777788999999642  345899988763   2445567888888864331 2333433211  1111   235689


Q ss_pred             EEEeccC
Q 045988          125 MVFEYLG  131 (530)
Q Consensus       125 lVmE~~~  131 (530)
                      +||+|+.
T Consensus       108 ~l~~~i~  114 (346)
T 2q83_A          108 VVYDWIE  114 (346)
T ss_dssp             EEEECCC
T ss_pred             EEEEeec
Confidence            9999993

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.32  E-value=0.00076  Score=69.31  Aligned_cols=76  Identities=17%  Similarity=0.183  Sum_probs=45.5

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEecc-------c-ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKS-------A-QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~-------~-~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      -++.||.|..+.||++..  ++..|+||....       . .........|.+++..+...   ....+.+++.+..   
T Consensus        38 ~i~~l~~G~~n~vyrv~~--~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~---~~~~vP~v~~~~~---  109 (420)
T 2pyw_A           38 VIKEVGDGNLNFVFIVVG--SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNL---SPDHVPEVYHFDR---  109 (420)
T ss_dssp             EEEECCCSSSCEEEEEEC--SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHH---SGGGSCCEEEEET---
T ss_pred             EEEEccCCCcEEEEEEEc--CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhh---CCCCCCeEEEECC---
Confidence            467899999999999953  567899993221       1 11113344566665554321   1123555555431   


Q ss_pred             CCCcEEEEEEecc-Cc
Q 045988          118 PNGQHVCMVFEYL-GE  132 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~  132 (530)
                         ...++|||++ ++
T Consensus       110 ---~~~~lv~e~l~~g  122 (420)
T 2pyw_A          110 ---TMALIGMRYLEPP  122 (420)
T ss_dssp             ---TTTEEEECCCCTT
T ss_pred             ---CccEEEEeecCCc
Confidence               3568999999 65

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.31  E-value=0.00057  Score=66.80  Aligned_cols=69  Identities=17%  Similarity=0.099  Sum_probs=44.6

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEE
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV  126 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lV  126 (530)
                      ++.|+.|....+|++      ..|++|+............+|..+++.+......  |-+   +....      ..-++|
T Consensus        23 i~~l~gG~tN~~~~~------~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~--P~~---~~~~~------~~~~~v   85 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA------GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVS--PEV---LHVDP------ATGVMV   85 (301)
T ss_dssp             CEEEESCSSEEEEEE------TTEEEEEECC----CCCHHHHHHHHHHHHHTTSS--CCE---EEECT------TTCCEE
T ss_pred             eeEcCCcccccccee------eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCC--Cce---EEEEC------CCCEEE
Confidence            678999999999999      4588898765432223346799999988765421  333   33322      224689


Q ss_pred             Eecc-Cc
Q 045988          127 FEYL-GE  132 (530)
Q Consensus       127 mE~~-~~  132 (530)
                      +||+ ++
T Consensus        86 ~e~i~~g   92 (301)
T 3dxq_A           86 TRYIAGA   92 (301)
T ss_dssp             EECCTTC
T ss_pred             EeecCCC
Confidence            9999 55

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.10  E-value=0.0057  Score=59.14  Aligned_cols=78  Identities=8%  Similarity=-0.030  Sum_probs=54.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      +....-++.+|.|..+.||+++. .+|+.|.+|+..... .....+..|...|+.|........|   +++.+-      
T Consensus        14 G~~v~~v~~~g~G~~~~vyrv~l-~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP---~v~~~~------   83 (288)
T 3f7w_A           14 GREVAAVAERGHSHRWHLYRVEL-ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVP---QVAGWD------   83 (288)
T ss_dssp             CCCEEEEEEEEEETTEEEEEEEE-TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSC---CEEEEE------
T ss_pred             CCCeEEEEecCCCCCeEEEEEEE-CCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcc---eEEecc------
Confidence            34566789999999999999974 568889999865433 2234577899999999654332333   333321      


Q ss_pred             CcEEEEEEecc
Q 045988          120 GQHVCMVFEYL  130 (530)
Q Consensus       120 ~~~~~lVmE~~  130 (530)
                        ..++||||+
T Consensus        84 --~~~lv~e~l   92 (288)
T 3f7w_A           84 --DRTLAMEWV   92 (288)
T ss_dssp             --TTEEEEECC
T ss_pred             --CceEEEEee
Confidence              237899998

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.82  E-value=0.0052  Score=62.03  Aligned_cols=72  Identities=13%  Similarity=0.069  Sum_probs=44.2

Q ss_pred             EEEeccccceEEEEEEeCC-------CCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           47 QSKLGWGHFSTVWLAWDTQ-------TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~-------~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ++.|.-|-...+|++....       +++.|.+|+............+|.++++.|.....     ..+++..+.    +
T Consensus        55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv-----~P~ll~~~~----~  125 (379)
T 3feg_A           55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSL-----GPQLYGVFP----E  125 (379)
T ss_dssp             CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTS-----SCCEEEEET----T
T ss_pred             EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCC-----CCeEEEEcC----C
Confidence            4577778888999997642       35789999865433345667799999999976542     244455543    2


Q ss_pred             CcEEEEEEeccC
Q 045988          120 GQHVCMVFEYLG  131 (530)
Q Consensus       120 ~~~~~lVmE~~~  131 (530)
                          .+||||+.
T Consensus       126 ----g~v~e~i~  133 (379)
T 3feg_A          126 ----GRLEQYIP  133 (379)
T ss_dssp             ----EEEEECCS
T ss_pred             ----ccEEEEec
Confidence                28999993

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.75  E-value=0.014  Score=57.19  Aligned_cols=80  Identities=9%  Similarity=0.022  Sum_probs=46.2

Q ss_pred             EEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecc--eeeecCCCCcE
Q 045988           45 VVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD--HFKHSGPNGQH  122 (530)
Q Consensus        45 ~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~--~~~~~~~~~~~  122 (530)
                      .-++.|+.|....||++... +| .+++|+.... .....+..|+.++..|..... .-|.++...+  .+..   ....
T Consensus        25 ~~~~~i~~G~~n~~~~v~~~-~g-~~vlk~~~~~-~~~~~l~~e~~~l~~L~~~g~-~vP~~~~~~~g~~~~~---~~g~   97 (322)
T 2ppq_A           25 TSYKGIAEGVENSNFLLHTT-KD-PLILTLYEKR-VEKNDLPFFLGLMQHLAAKGL-SCPLPLPRKDGELLGE---LSGR   97 (322)
T ss_dssp             EEEEEECC---EEEEEEEES-SC-CEEEEEECC----CCHHHHHHHHHHHHHHTTC-CCCCBCCBTTCCSCEE---ETTE
T ss_pred             eEeeccCCCcccceEEEEeC-Cc-cEEEEEeCCC-CCHHHHHHHHHHHHHHHHCCC-CCCcccCCCCCCEEEE---ECCE
Confidence            34677888999999999643 33 6889987763 123456789999999875432 2233332111  0000   1245


Q ss_pred             EEEEEeccC
Q 045988          123 VCMVFEYLG  131 (530)
Q Consensus       123 ~~lVmE~~~  131 (530)
                      .++||+++.
T Consensus        98 ~~~l~~~l~  106 (322)
T 2ppq_A           98 PAALISFLE  106 (322)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEeCC
Confidence            789999993

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.74  E-value=0.014  Score=57.43  Aligned_cols=77  Identities=14%  Similarity=0.163  Sum_probs=48.3

Q ss_pred             EEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecce---eeecCCCCcEEE
Q 045988           48 SKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH---FKHSGPNGQHVC  124 (530)
Q Consensus        48 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~---~~~~~~~~~~~~  124 (530)
                      ..|+ |....||++.. .+|+.+++|+..........+..|..++..|..... .   +++++..   ....  .+...+
T Consensus        32 ~~l~-g~~n~~y~v~~-~~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~-~---vp~~~~~~g~~~~~--~~g~~~  103 (328)
T 1zyl_A           32 TPLN-SYENRVYQFQD-EDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEV-P---VAAPVAFNGQTLLN--HQGFYF  103 (328)
T ss_dssp             EEEC-CSSSEEEEECC-TTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTC-S---BCCCCCBTTBSCEE--ETTEEE
T ss_pred             Eeec-CcccceEEEEc-CCCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCC-e---ecceeecCCcEEEE--ECCEEE
Confidence            3456 78889998853 346679999987443345677789999999975431 1   3333332   0000  124678


Q ss_pred             EEEeccCc
Q 045988          125 MVFEYLGE  132 (530)
Q Consensus       125 lVmE~~~~  132 (530)
                      +||++++|
T Consensus       104 ~l~~~i~G  111 (328)
T 1zyl_A          104 AVFPSVGG  111 (328)
T ss_dssp             EEEECCCC
T ss_pred             EEEEecCC
Confidence            89999943

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.72  E-value=0.015  Score=59.71  Aligned_cols=72  Identities=19%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             EEEEeccccceEEEEEEeCC-------CCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQ-------TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~-------~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      -++.|+.|....||++....       .+..|++|+.... ...+.+.+|..+++.|.....     ..+++..+.    
T Consensus        77 ~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~-~~~~~li~E~~~l~~L~~~g~-----~P~l~~~~~----  146 (429)
T 1nw1_A           77 RISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP-ETESHLVAESVIFTLLSERHL-----GPKLYGIFS----  146 (429)
T ss_dssp             EEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC-CCHHHHHHHHHHHHHHHHTTS-----SSCEEEEET----
T ss_pred             EEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC-CcHHHHHHHHHHHHHHHhCCC-----CCcEEEEeC----
Confidence            36778889899999997643       2578999988442 112566789999999976442     244455443    


Q ss_pred             CCcEEEEEEeccC
Q 045988          119 NGQHVCMVFEYLG  131 (530)
Q Consensus       119 ~~~~~~lVmE~~~  131 (530)
                      +    .+||||+.
T Consensus       147 ~----g~v~e~l~  155 (429)
T 1nw1_A          147 G----GRLEEYIP  155 (429)
T ss_dssp             T----EEEECCCC
T ss_pred             C----CEEEEEeC
Confidence            1    28899983

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.70  E-value=0.012  Score=60.99  Aligned_cols=72  Identities=13%  Similarity=0.034  Sum_probs=46.7

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      -++.|+.|-...+|++.....+..|++|+............+|..+++.|....     -..+++..+.    +    .+
T Consensus       112 ~i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~g-----l~P~ll~~~~----~----G~  178 (458)
T 2qg7_A          112 EFQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKN-----IAKKIYVFFT----N----GR  178 (458)
T ss_dssp             EEEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSS-----SBCCEEEEET----T----EE
T ss_pred             EEEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcC-----CCCCEEEEeC----C----eE
Confidence            356788899999999986554588999987543222222358999999996533     1345565553    2    25


Q ss_pred             EEecc
Q 045988          126 VFEYL  130 (530)
Q Consensus       126 VmE~~  130 (530)
                      ||||+
T Consensus       179 v~e~I  183 (458)
T 2qg7_A          179 IEEFM  183 (458)
T ss_dssp             EEECC
T ss_pred             EEEee
Confidence            99998

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.67  E-value=0.0066  Score=59.97  Aligned_cols=79  Identities=10%  Similarity=0.003  Sum_probs=39.2

Q ss_pred             EEEeccccceE-EEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           47 QSKLGWGHFST-VWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        47 ~~~LG~G~fg~-Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      ++.|+.|+... +|+... .++..+++|......  ...+..|+.+++.|..... .   +.+++.+-.    ...  ++
T Consensus        23 ~~~l~gg~s~~~~~r~~~-~~~~~~vlk~~~~~~--~~~~~~e~~~l~~L~~~g~-~---vP~v~~~d~----~~g--~l   89 (333)
T 3csv_A           23 RTPLAGDASSRRYQRLRS-PTGAKAVLMDWSPEE--GGDTQPFVDLAQYLRNLDI-S---APEIYAEEH----ARG--LL   89 (333)
T ss_dssp             ECC--------CCEEEEC-TTCCEEEEEECCTTT--TCCSHHHHHHHHHHHHTTC-B---CCCEEEEET----TTT--EE
T ss_pred             eeECCCCCCCceEEEEEc-CCCCeEEEEECCCCC--CccccHHHHHHHHHHhCCC-C---CCceeeecC----CCC--EE
Confidence            34565555444 667753 235667777644322  1345678999988875421 1   334444311    122  68


Q ss_pred             EEecc-CcCHHHHH
Q 045988          126 VFEYL-GENLLTLI  138 (530)
Q Consensus       126 VmE~~-~~~L~~~i  138 (530)
                      |||++ +..+.+.+
T Consensus        90 l~e~l~~~~l~~~l  103 (333)
T 3csv_A           90 LIEDLGDALFTEVI  103 (333)
T ss_dssp             EECCCCSCBHHHHH
T ss_pred             EEeeCCCcchHHHh
Confidence            99999 44554433

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.56  E-value=0.0051  Score=61.81  Aligned_cols=72  Identities=13%  Similarity=0.107  Sum_probs=43.7

Q ss_pred             EEEeccccceEEEEEEeCC--------CCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           47 QSKLGWGHFSTVWLAWDTQ--------TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~--------~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .+.|+.|....+|++....        .+..|++|+.............|..+++.|.....     +.+++..+.    
T Consensus        38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~-----~P~~~~~~~----  108 (369)
T 3c5i_A           38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKI-----APQLLNTFN----  108 (369)
T ss_dssp             EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTS-----SCCEEEEET----
T ss_pred             EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCC-----CCceEEecC----
Confidence            5678888889999997543        13689999876543322234689999999875431     334444331    


Q ss_pred             CCcEEEEEEeccC
Q 045988          119 NGQHVCMVFEYLG  131 (530)
Q Consensus       119 ~~~~~~lVmE~~~  131 (530)
                          -++||||+.
T Consensus       109 ----~~~v~e~i~  117 (369)
T 3c5i_A          109 ----GGRIEEWLY  117 (369)
T ss_dssp             ----TEEEEECCC
T ss_pred             ----CcEEEEEec
Confidence                168999993

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=96.38  E-value=0.025  Score=51.88  Aligned_cols=32  Identities=9%  Similarity=0.201  Sum_probs=26.8

Q ss_pred             CHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Q 045988          133 NLLTLIKYADYRGVPLHMVKEICFHILVGLDHL  165 (530)
Q Consensus       133 ~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~L  165 (530)
                      +|.+++... ..++++++++.+++|.+.+|.-+
T Consensus        34 SL~eIL~~~-~~PlsEEqaWALc~Qc~~~L~~~   65 (229)
T 2yle_A           34 SLEEILRLY-NQPINEEQAWAVCYQCCGSLRAA   65 (229)
T ss_dssp             EHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHhh
Confidence            688888754 45699999999999999998776

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.58  E-value=0.059  Score=52.72  Aligned_cols=96  Identities=19%  Similarity=0.206  Sum_probs=68.5

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEE
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCM  125 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~l  125 (530)
                      -.+.|+.|.+..+|+...  ++..|++|+....  ....+.+|...|+.|....   ...+.+++.+...    ....++
T Consensus        40 ~~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~--~~~~~~~E~~~L~~L~~~~---~v~VP~vl~~~~~----~g~~~l  108 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLIND--EVQTVFVKINERS--YRSMFRAEADQLALLAKTN---SINVPLVYGIGNS----QGHSFL  108 (312)
T ss_dssp             EEEEECCSSSSEEEEEES--SSCEEEEEEEEGG--GHHHHHHHHHHHHHHHHTT---SSBCCCEEEEEEC----SSEEEE
T ss_pred             eeEEeCCccceeeeEEEE--CCCeEEEEeCCcc--cHHHHHHHHHHHHHHHhhC---CCCcceEEEEeec----CCceEE
Confidence            467899999999999964  4667888987643  2566788999999997542   1235566665542    357899


Q ss_pred             EEeccCc-CHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh
Q 045988          126 VFEYLGE-NLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRE  168 (530)
Q Consensus       126 VmE~~~~-~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~  168 (530)
                      |||++.+ .+            +.    ....++..+|+.||+.
T Consensus       109 vme~l~G~~~------------~~----~~~~~lG~~LA~LH~~  136 (312)
T 3jr1_A          109 LLEALNKSKN------------KQ----SSFTIFAEKIAQLHQI  136 (312)
T ss_dssp             EEECCCCCCC------------CT----THHHHHHHHHHHHHHC
T ss_pred             EEEeccCCCC------------Cc----hhHHHHHHHHHHHHcC
Confidence            9999944 32            11    2456788999999984

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=95.29  E-value=0.12  Score=51.08  Aligned_cols=74  Identities=8%  Similarity=0.113  Sum_probs=43.4

Q ss_pred             ccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec--CCCCcEEEEEEe
Q 045988           51 GWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS--GPNGQHVCMVFE  128 (530)
Q Consensus        51 G~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~--~~~~~~~~lVmE  128 (530)
                      |.|....||++.. .+| .|++|+.....     ...|+.+++.|.....   +.|++.+......  ...+...++||+
T Consensus        32 G~g~~N~vy~v~~-~~g-~~vLK~~~~~~-----~~~E~~~l~~L~~~g~---~~vp~pi~~~~G~~~~~~~g~~~~l~~  101 (339)
T 3i1a_A           32 GADTNAFAYQADS-ESK-SYFIKLKYGYH-----DEINLSIIRLLHDSGI---KEIIFPIHTLEAKLFQQLKHFKIIAYP  101 (339)
T ss_dssp             TSCSSCEEEEEEC-SSC-EEEEEEEECSS-----CCHHHHHHHHHHHTTC---CSSCCCCCCTTSCSSEECSSEEEEEEE
T ss_pred             cCccccceEEEEe-CCC-CEEEEEecCcc-----chHHHHHHHHHHhcCC---cccccceecCCCCEEEEECCEEEEEEe
Confidence            4444689999964 345 89999876543     2478888888865431   2233333221000  002367899999


Q ss_pred             cc-CcCH
Q 045988          129 YL-GENL  134 (530)
Q Consensus       129 ~~-~~~L  134 (530)
                      |+ |..+
T Consensus       102 ~i~G~~~  108 (339)
T 3i1a_A          102 FIHAPNG  108 (339)
T ss_dssp             CCCCCBT
T ss_pred             ccCCCcC
Confidence            99 5433

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=94.47  E-value=0.14  Score=52.23  Aligned_cols=75  Identities=8%  Similarity=0.110  Sum_probs=48.9

Q ss_pred             EEEEeccccceEEEEEEeCCC-------CeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQT-------SHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~-------~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      -++.|..|-...+|++.....       +..|++|+............+|..+++.|.....     ..++++.+.    
T Consensus        74 ~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~~gi-----~P~l~~~~~----  144 (424)
T 3mes_A           74 EVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNINI-----APNIIADFP----  144 (424)
T ss_dssp             EEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHHTTS-----SCCEEEEET----
T ss_pred             EEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHhcCC-----CCCEEEEcC----
Confidence            356677788889999976521       5789999876543333345689999999975442     334444332    


Q ss_pred             CCcEEEEEEecc-CcC
Q 045988          119 NGQHVCMVFEYL-GEN  133 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~  133 (530)
                          -++||||+ |..
T Consensus       145 ----~~~I~efI~G~~  156 (424)
T 3mes_A          145 ----EGRIEEFIDGEP  156 (424)
T ss_dssp             ----TEEEEECCCSEE
T ss_pred             ----CCEEEEEeCCcc
Confidence                26889999 533

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=90.91  E-value=1  Score=45.42  Aligned_cols=34  Identities=12%  Similarity=0.070  Sum_probs=23.3

Q ss_pred             CCEEEEEEeccccceEEEEEEeCC-------CCeEEEEEEec
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQ-------TSHYVALKVQK   76 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~-------~~~~vAiK~~~   76 (530)
                      +.++ +++|+-|-.-.+|++....       ....|.+++.-
T Consensus        53 ~~l~-v~~lsGG~SN~~y~v~~~~~~~~~~~~~~~~llRi~g   93 (401)
T 3g15_A           53 DEFH-ISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYG   93 (401)
T ss_dssp             GGCE-EEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEE
T ss_pred             CCEE-EEEeCCccccceEEEEECCCCcccccCCCeEEEEeCC
Confidence            3454 5677778888999997543       23578888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	530
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	5e-39
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	8e-38
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-25
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	6e-14
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	6e-25
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-23
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	9e-25
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-14
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-23
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-19
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-23
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-15
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-23
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-15
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-23
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-15
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	8e-23
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	6e-13
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-22
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-13
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-22
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-20
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-22
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-11
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	3e-22
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	3e-15
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	5e-22
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	8e-09
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-21
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-15
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-21
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-12
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-20
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-11
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-20
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-08
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-20
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-16
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-20
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-12
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-20
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-16
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-20
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-16
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	7e-20
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-08
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-19
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	6e-18
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-13
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-19
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-14
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-19
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	5e-19
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	5e-19
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	7e-05
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-18
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-10
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-18
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-08
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-18
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	3e-18
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-18
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-10
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-18
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-05
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	8e-18
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	6e-17
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-17
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-10
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-17
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-09
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-17
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	5e-05
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-17
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	8e-14
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-17
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-16
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-17
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-10
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-17
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	0.003
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	7e-17
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-07
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	7e-17
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	9e-09
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-16
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-04
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-16
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-16
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-16
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-06
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	6e-16
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-07
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-16
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-08
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	3e-15
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	3e-11
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-15
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-05
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-14
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-05
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-14
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-06
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-13
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-06
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-13
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	3e-06
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-08
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-13
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-04
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-12
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-06
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-12
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-11
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	8e-07
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-11
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-04
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	4e-11
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	4e-07
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-10
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-05
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-10
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	5e-05

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  144 bits (362), Expect = 5e-39
 Identities = 88/208 (42%), Positives = 126/208 (60%)

Query: 282 INKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYS 341
           I+ D K  +            ++ K+ D GNACW  + +TN IQTR+YR PEVLLG+ + 
Sbjct: 148 IHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWG 207

Query: 342 TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRD 401
             AD+WS AC+ FEL TGD LF+P  G +Y +D+DH+A ++ELLG +P  +   G+Y+R 
Sbjct: 208 CGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRT 267

Query: 402 FFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT 461
           FFN  G LR+I +L+FWPL  VL EKY FS+ +A +++DFL P+L   P KR  A   + 
Sbjct: 268 FFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN 327

Query: 462 HPWINVGPRLLEPSMAATQPQDTGGSIS 489
           HPW+     + E  +   +   +G  I 
Sbjct: 328 HPWLKDTLGMEEIRVPDRELYGSGSDIP 355

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  140 bits (353), Expect = 8e-38
 Identities = 85/170 (50%), Positives = 115/170 (67%), Gaps = 5/170 (2%)

Query: 30  YHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEI 89
           YH    G+ +K+ RY++  KLGWGHFSTVWLA D   + +VA+K+ +  + YTEAA DEI
Sbjct: 1   YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEI 60

Query: 90  KILKQIAEGDPD-----DKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYR 144
           K+L+++ + D           ++KLLDHF H GPNG HV MVFE LGENLL LIK  ++R
Sbjct: 61  KLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHR 120

Query: 145 GVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR 194
           G+PL  VK+I   +L+GLD++HR   IIHTD+KPENVL+  +  P    +
Sbjct: 121 GIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQ 170

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 1e-25
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 12/144 (8%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKILKQIAEGDPD 101
            + +  +LG G F  V+ A + +TS   A KV    ++   E  + EI IL         
Sbjct: 13  FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC------ 66

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVG 161
           D   +VKLLD F +      ++ ++ E+     +  +     R +    ++ +C   L  
Sbjct: 67  DHPNIVKLLDAFYYEN----NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA 122

Query: 162 LDHLHRELSIIHTDLKPENVLLMS 185
           L++LH +  IIH DLK  N+L   
Sbjct: 123 LNYLH-DNKIIHRDLKAGNILFTL 145

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 6e-14
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 53/179 (29%)

Query: 297 LLAAVDLKCKLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLG-----SKYSTPADLWS 348
           +L  +D   KL DFG +     T ++  + I T  +  PEV++        Y   AD+WS
Sbjct: 141 ILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWS 200

Query: 349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD 408
                 E+A  +             + + + +++++    P  +A   R+S +F      
Sbjct: 201 LGITLIEMAEIEPPHH---------ELNPMRVLLKIAKSEPPTLAQPSRWSSNF------ 245

Query: 409 LRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV 467
                                          DFL   L+   + R T +Q L HP++ V
Sbjct: 246 ------------------------------KDFLKKCLEKNVDARWTTSQLLQHPFVTV 274

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 6e-25
 Identities = 29/149 (19%), Positives = 65/149 (43%), Gaps = 15/149 (10%)

Query: 40  KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAE 97
           K+  +   S+LG G+   V+      +   +A K+   +         + E+++L +   
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC-- 61

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICF 156
               +   +V     F   G     + +  E++ G +L  ++K      +P  ++ ++  
Sbjct: 62  ----NSPYIVGFYGAFYSDG----EISICMEHMDGGSLDQVLK--KAGRIPEQILGKVSI 111

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            ++ GL +L  +  I+H D+KP N+L+ S
Sbjct: 112 AVIKGLTYLREKHKIMHRDVKPSNILVNS 140

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.0 bits (246), Expect = 2e-23
 Identities = 39/171 (22%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTND-IQTRQYRCPEVLLGSKYSTPADLWSFACICFE 355
           +L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      E
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVE 195

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL 415
           +A G     P      D  E  L    ++ G             R   +   D R    +
Sbjct: 196 MAVGRYPIPPP-----DAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAI 250

Query: 416 RFWPLNKVLIEKYDFSEKDANDMA-DFLVPILDFVPEKRPTAAQCLTHPWI 465
                  V            +    DF+   L   P +R    Q + H +I
Sbjct: 251 FELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFI 301

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 9e-25
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 11/155 (7%)

Query: 37  DTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIA 96
           +   +   V    LG G    V   ++ +T    ALK+ +        A  E+++  + +
Sbjct: 7   NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRAS 62

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEIC 155
                    +V+++D +++     + + +V E L G  L + I+    +        EI 
Sbjct: 63  -----QCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIM 117

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS 190
             I   + +LH  ++I H D+KPEN+L  S    +
Sbjct: 118 KSIGEAIQYLH-SINIAHRDVKPENLLYTSKRPNA 151

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-14
 Identities = 44/213 (20%), Positives = 71/213 (33%), Gaps = 48/213 (22%)

Query: 302 DLKCKLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           +   KL DFG A    ++   T    T  Y  PEVL   KY    D+WS   I + L  G
Sbjct: 150 NAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 209

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              F  + G             + +   M  +I                       R   
Sbjct: 210 YPPFYSNHG-------------LAISPGMKTRI-----------------------RMGQ 233

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAAT 479
                 E  + SE    ++   +  +L   P +R T  + + HPWI      ++ +    
Sbjct: 234 YEFPNPEWSEVSE----EVKMLIRNLLKTEPTQRMTITEFMNHPWI------MQSTKVPQ 283

Query: 480 QPQDTGGSISDKNRREKDEREAMEVRVGNIAID 512
            P  T   + +   R +D +E M   +  + +D
Sbjct: 284 TPLHTSRVLKEDKERWEDVKEEMTSALATMRVD 316

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.2 bits (246), Expect = 1e-23
 Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 9/150 (6%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSH-YVALKV---QKSAQHYTEAALDEIKILKQIA 96
           + +Y   +++G G +  V+ A D +    +VALK    Q   +    + + E+ +L+ + 
Sbjct: 6   DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLE 65

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQ-HVCMVFEYLGENLLTLIKYADYRGVPLHMVKEIC 155
             +  +   VV+L D    S  + +  + +VFE++ ++L T +      GVP   +K++ 
Sbjct: 66  TFEHPN---VVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMM 122

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           F +L GLD LH    ++H DLKP+N+L+ S
Sbjct: 123 FQLLRGLDFLH-SHRVVHRDLKPQNILVTS 151

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 2e-19
 Identities = 43/163 (26%), Positives = 59/163 (36%), Gaps = 21/163 (12%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K                T+ + T  YR PEVLL S Y+TP DLWS  CI  E+     LF
Sbjct: 156 KLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLF 215

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
              S      D D L  +++++G+                      R +   R    +K 
Sbjct: 216 RGSS------DVDQLGKILDVIGL---------------PGEEDWPRDVALPRQAFHSKS 254

Query: 424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
                 F         D L+  L F P KR +A   L+HP+  
Sbjct: 255 AQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQ 297

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (241), Expect = 4e-23
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 14/151 (9%)

Query: 41  NGRYV-VQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIA 96
           +GR++    ++G G F TV+   DT+T+  VA      +K  +   +   +E ++LK + 
Sbjct: 7   DGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL- 65

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEIC 155
                    +V+  D ++ +    + + +V E +    L T +K   ++ + + +++  C
Sbjct: 66  -----QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK--RFKVMKIKVLRSWC 118

Query: 156 FHILVGLDHLHRE-LSIIHTDLKPENVLLMS 185
             IL GL  LH     IIH DLK +N+ +  
Sbjct: 119 RQILKGLQFLHTRTPPIIHRDLKCDNIFITG 149

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (181), Expect = 3e-15
 Identities = 21/170 (12%), Positives = 45/170 (26%), Gaps = 47/170 (27%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQ-TRQYRCPEVLLGSKYSTPADLWSFACICFE 355
            +       K+ D G A      F   +  T ++  PE+    KY    D+++F     E
Sbjct: 146 FITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLE 204

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL 415
           +AT +  +                                     +  N     R +   
Sbjct: 205 MATSEYPYS------------------------------------ECQNAAQIYRRVTSG 228

Query: 416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                         F +    ++ + +   +    ++R +    L H + 
Sbjct: 229 VKPA---------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 269

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (244), Expect = 4e-23
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 14/154 (9%)

Query: 36  GDTFK-NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKIL 92
           G  F    RY   S +G G +  V  A+D      VA+K       Q Y +  L EIKIL
Sbjct: 1   GQVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKIL 60

Query: 93  KQIAEGDPDDKKCVVKLLDHFKH-SGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
            +         + ++ + D  +  +    + V +V   +G +L  L+K    + +    +
Sbjct: 61  LRF------RHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLK---TQHLSNDHI 111

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
               + IL GL ++H   +++H DLKP N+LL +
Sbjct: 112 CYFLYQILRGLKYIH-SANVLHRDLKPSNLLLNT 144

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 2e-15
 Identities = 46/179 (25%), Positives = 67/179 (37%), Gaps = 24/179 (13%)

Query: 295 KELLAAVDLKCKLVDFGNAC------WTYKQFTNDIQTRQYRCPEVLLGSKYSTPA-DLW 347
             LL       K+ DFG A             T  + TR YR PE++L SK  T + D+W
Sbjct: 138 SNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIW 197

Query: 348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHG 407
           S  CI  E+ +   +F            D L  ++ +LG   +          +  N   
Sbjct: 198 SVGCILAEMLSNRPIFPGKH------YLDQLNHILGILGSPSQ----------EDLNCII 241

Query: 408 DLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           +L+    L   P    +     F   D +   D L  +L F P KR    Q L HP++ 
Sbjct: 242 NLKARNYLLSLPHKNKVPWNRLFPNAD-SKALDLLDKMLTFNPHKRIEVEQALAHPYLE 299

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 98.2 bits (244), Expect = 4e-23
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 12/144 (8%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALK-VQKSAQHYTEAALDEIKILKQIAEGDPD 101
            Y +  +LG G F  V    +  T +  A K V    +   E    EI+ +  +      
Sbjct: 27  HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL------ 80

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVG 161
               +V L D F+        + M++E++    L      ++  +      E    +  G
Sbjct: 81  RHPTLVNLHDAFEDDN----EMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKG 136

Query: 162 LDHLHRELSIIHTDLKPENVLLMS 185
           L H+H E + +H DLKPEN++  +
Sbjct: 137 LCHMH-ENNYVHLDLKPENIMFTT 159

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 75.1 bits (184), Expect = 3e-15
 Identities = 41/225 (18%), Positives = 64/225 (28%), Gaps = 49/225 (21%)

Query: 297 LLAAVDLKCKLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
                  + KL+DFG        +       T ++  PEV  G       D+WS   + +
Sbjct: 157 FTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSY 216

Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR 414
            L +G   F   +      D++ L  +      M                          
Sbjct: 217 ILLSGLSPFGGEN------DDETLRNVKSCDWNMDDSA---------------------- 248

Query: 415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEP 474
              +            SE    D  DF+  +L   P  R T  Q L HPW+  G      
Sbjct: 249 ---FS---------GISE----DGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPGRD 292

Query: 475 SMAATQPQDTGGSISDKNRREKDEREAMEVRVGNIAIDGVSKPSR 519
           S   +        I D  + + D        +G I+     +  R
Sbjct: 293 SQIPSSRYT---KIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHR 334

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 97.4 bits (242), Expect = 8e-23
 Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 18/182 (9%)

Query: 12  VSDYTSEDEGTED-YRRGGYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYV 70
           ++DY   D+  ED +++     V +        Y +  +LG G F  V    +  T    
Sbjct: 1   INDY---DKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVF 57

Query: 71  ALKV-QKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEY 129
             K              +EI I+ Q+          ++ L D F+        + ++ E+
Sbjct: 58  VAKFINTPYPLDKYTVKNEISIMNQL------HHPKLINLHDAFEDKY----EMVLILEF 107

Query: 130 L-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMID 188
           L G  L   I   DY+ +    V         GL H+H E SI+H D+KPEN++  +   
Sbjct: 108 LSGGELFDRIAAEDYK-MSEAEVINYMRQACEGLKHMH-EHSIVHLDIKPENIMCETKKA 165

Query: 189 PS 190
            S
Sbjct: 166 SS 167

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 67.8 bits (165), Expect = 6e-13
 Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 46/166 (27%)

Query: 302 DLKCKLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
               K++DFG A      +       T ++  PE++         D+W+   + + L +G
Sbjct: 165 ASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG 224

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              F          D + L  +                                    + 
Sbjct: 225 LSPFAGED------DLETLQNVKRCDWEFDEDA-------------------------FS 253

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                      S     +  DF+  +L   P KR T    L HPW+
Sbjct: 254 ---------SVSP----EAKDFIKNLLQKEPRKRLTVHDALEHPWL 286

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (239), Expect = 1e-22
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 13/144 (9%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
           +Y++   LG G F  V    +T +      K  K           EI IL          
Sbjct: 6   KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA------R 59

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVG 161
            + ++ L + F+        + M+FE++ G ++   I  + +  +    +      +   
Sbjct: 60  HRNILHLHESFESME----ELVMIFEFISGLDIFERINTSAFE-LNEREIVSYVHQVCEA 114

Query: 162 LDHLHRELSIIHTDLKPENVLLMS 185
           L  LH   +I H D++PEN++  +
Sbjct: 115 LQFLH-SHNIGHFDIRPENIIYQT 137

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 2e-13
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 46/166 (27%)

Query: 302 DLKCKLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
               K+++FG A        F       +Y  PEV      ST  D+WS   + + L +G
Sbjct: 140 SSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG 199

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              F   +      ++  +  +M        +                          + 
Sbjct: 200 INPFLAET------NQQIIENIMNAEYTFDEEA-------------------------FK 228

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                    + S     +  DF+  +L    + R TA++ L HPW+
Sbjct: 229 ---------EISI----EAMDFVDRLLVKERKSRMTASEALQHPWL 261

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 2e-22
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 8/199 (4%)

Query: 304 KCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLF 363
           K           T    T  + TR YR PEV+LG  Y    D+WS  CI  E+    +LF
Sbjct: 159 KILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILF 218

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                       D    ++E LG    +     + +   +  +              + +
Sbjct: 219 PGRD------YIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSL 272

Query: 424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQD 483
                + ++  A+   D L  +L   P KR +    L HP+INV     E      Q  D
Sbjct: 273 FPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQIYD 332

Query: 484 TGGSISDKNRREKDEREAM 502
               + ++    ++ +E +
Sbjct: 333 K--QLDEREHTIEEWKELI 349

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 3e-20
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 18/163 (11%)

Query: 30  YHAVRMGDTFKN--GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEA 84
           +++V +GD+      RY     +G G    V  A+D      VA+K        Q + + 
Sbjct: 3   FYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKR 62

Query: 85  ALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP--NGQHVCMVFEYLGENLLTLIKYAD 142
           A  E+ ++K +      + K ++ LL+ F         Q V +V E +  NL  +I+   
Sbjct: 63  AYRELVLMKCV------NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ--- 113

Query: 143 YRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
              +    +  + + +L G+ HLH    IIH DLKP N+++ S
Sbjct: 114 -MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVKS 154

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 95.1 bits (236), Expect = 2e-22
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 23/154 (14%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----------QKSAQHYTEAALDEIKIL 92
            Y  +  LG G  S V       T    A+K+           +  Q   EA L E+ IL
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 93  KQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMV 151
           +++          +++L D ++          +VF+ +    L   +   +   +     
Sbjct: 64  RKV-----SGHPNIIQLKDTYET----NTFFFLVFDLMKKGELFDYLT--EKVTLSEKET 112

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
           ++I   +L  +  LH +L+I+H DLKPEN+LL  
Sbjct: 113 RKIMRALLEVICALH-KLNIVHRDLKPENILLDD 145

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 34/172 (19%), Positives = 52/172 (30%), Gaps = 52/172 (30%)

Query: 302 DLKCKLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGS------KYSTPADLWSFACIC 353
           D+  KL DFG +C     ++      T  Y  PE++  S       Y    D+WS   I 
Sbjct: 146 DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIM 205

Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR 413
           + L  G   F                                             +  +R
Sbjct: 206 YTLLAGSPPFWHRK----------------------------------------QMLMLR 225

Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
            +          E  D+S+     + D +   L   P+KR TA + L HP+ 
Sbjct: 226 MIMSGNYQFGSPEWDDYSD----TVKDLVSRFLVVQPQKRYTAEEALAHPFF 273

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.1 bits (236), Expect = 3e-22
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 16/154 (10%)

Query: 33  VRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-QKSAQHYTEAALDEIKI 91
           V +GD     +Y    K+G G   TV+ A D  T   VA++      Q   E  ++EI +
Sbjct: 13  VSVGD--PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILV 70

Query: 92  LKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMV 151
           +++           +V  LD +         + +V EYL    LT         +    +
Sbjct: 71  MREN------KNPNIVNYLDSYLVGD----ELWVVMEYLAGGSLT--DVVTETCMDEGQI 118

Query: 152 KEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             +C   L  L+ LH    +IH D+K +N+LL  
Sbjct: 119 AAVCRECLQALEFLH-SNQVIHRDIKSDNILLGM 151

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 3e-15
 Identities = 40/189 (21%), Positives = 63/189 (33%), Gaps = 50/189 (26%)

Query: 297 LLAAVDLKCKLVDFGNAC---WTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC 353
           +L  +D   KL DFG          + +  + T  +  PEV+    Y    D+WS   + 
Sbjct: 147 ILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 206

Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR 413
            E+  G+  +          +E+ L  +          IA  G                 
Sbjct: 207 IEMIEGEPPYL---------NENPLRAL--------YLIATNGTP--------------- 234

Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL-- 471
            L+              S        DFL   LD   EKR +A + L H ++ +   L  
Sbjct: 235 ELQNPE---------KLSA----IFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPLSS 281

Query: 472 LEPSMAATQ 480
           L P +AA +
Sbjct: 282 LTPLIAAAK 290

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 93.7 bits (232), Expect = 5e-22
 Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 14/154 (9%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIA 96
           + RY +   LG+G  S V LA D +    VA+KV ++       +      E +    + 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL- 64

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEIC 155
                +   +V + D  +   P G    +V EY+ G  L  ++       +      E+ 
Sbjct: 65  -----NHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH--TEGPMTPKRAIEVI 117

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP 189
                 L+  H +  IIH D+KP N+++ +    
Sbjct: 118 ADACQALNFSH-QNGIIHRDVKPANIMISATNAV 150

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 54.4 bits (130), Expect = 8e-09
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 44/190 (23%)

Query: 278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG 337
            N  I++D K  +          V          ++  +  Q    I T QY  PE   G
Sbjct: 129 QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARG 188

Query: 338 SKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGR 397
                 +D++S  C+ +E+ TG+  F           +  +++                 
Sbjct: 189 DSVDARSDVYSLGCVLYEVLTGEPPFT---------GDSPVSVAY--------------- 224

Query: 398 YSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAA 457
                       +H+R     P            E  + D+   ++  L   PE R   A
Sbjct: 225 ------------QHVREDPIPPS--------ARHEGLSADLDAVVLKALAKNPENRYQTA 264

Query: 458 QCLTHPWINV 467
             +    + V
Sbjct: 265 AEMRADLVRV 274

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 1e-21
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 17/166 (10%)

Query: 27  RGGYHAVRMGDTFKN--GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHY 81
           R G++   +  T       Y     +G G +  V  A D +T   VA+K       ++ +
Sbjct: 1   RSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELF 60

Query: 82  TEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP--NGQHVCMVFEYLGENLLTLIK 139
            + A  E+++LK +        + V+ LLD F       +     +V  ++G +L  L+K
Sbjct: 61  AKRAYRELRLLKHM------RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMK 114

Query: 140 YADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
              +  +    ++ + + +L GL ++H    IIH DLKP N+ +  
Sbjct: 115 ---HEKLGEDRIQFLVYQMLKGLRYIH-AAGIIHRDLKPGNLAVNE 156

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 1e-15
 Identities = 47/202 (23%), Positives = 74/202 (36%), Gaps = 22/202 (10%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGD 360
           D + K++DFG A     + T  + TR YR PEV+L   +Y+   D+WS  CI  E+ TG 
Sbjct: 157 DCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK 216

Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL 420
            LF            D L  +M++ G  P +     +         G     ++      
Sbjct: 217 TLFKGSD------HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKK----DF 266

Query: 421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQ 480
             +L               + L  +L    E+R TA + L HP+        E      +
Sbjct: 267 ASILTNASP-------LAVNLLEKMLVLDAEQRVTAGEALAHPYFE-SLHDTEDEPQVQK 318

Query: 481 PQDTGGSISDKNRREKDEREAM 502
             D   S  D +R   + +   
Sbjct: 319 YDD---SFDDVDRTLDEWKRVT 337

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 3e-21
 Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 16/147 (10%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGD 99
             + +   LG G +  V LA +  T   VA+K+   K A    E    EI I K +    
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML---- 60

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHI 158
             + + VVK   H +     G    +  EY  G  L   I+     G+P    +     +
Sbjct: 61  --NHENVVKFYGHRRE----GNIQYLFLEYCSGGELFDRIE--PDIGMPEPDAQRFFHQL 112

Query: 159 LVGLDHLHRELSIIHTDLKPENVLLMS 185
           + G+ +LH  + I H D+KPEN+LL  
Sbjct: 113 MAGVVYLH-GIGITHRDIKPENLLLDE 138

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (156), Expect = 4e-12
 Identities = 25/171 (14%), Positives = 44/171 (25%), Gaps = 51/171 (29%)

Query: 302 DLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLGSKYSTPA-DLWSFACICFE 355
               K+ DFG A         +       T  Y  PE+L   ++     D+WS   +   
Sbjct: 139 RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTA 198

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL 415
           +  G++ +D  S                                    +   +    +  
Sbjct: 199 MLAGELPWDQPS------------------------------------DSCQEYSDWKEK 222

Query: 416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           + +          +  +K  +     L  IL   P  R T        W N
Sbjct: 223 KTYL---------NPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYN 264

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 1e-20
 Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 16/150 (10%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILK 93
             +Y V   LG G F +V+       +  VA+K                     E+ +LK
Sbjct: 3   ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLK 62

Query: 94  QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKE 153
           +++ G       V++LLD F+          ++ E             +   +   + + 
Sbjct: 63  KVSSGFS----GVIRLLDWFER----PDSFVLILERPEPVQDLFDFITERGALQEELARS 114

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLL 183
             + +L  + H H    ++H D+K EN+L+
Sbjct: 115 FFWQVLEAVRHCH-NCGVLHRDIKDENILI 143

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 1e-11
 Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 56/171 (32%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQ-TRQYRCPEVLLGSKY-STPADLWSFACICF 354
           L+     + KL+DFG+          D   TR Y  PE +   +Y    A +WS   + +
Sbjct: 142 LIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLY 201

Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR 414
           ++                             G +P                         
Sbjct: 202 DMVC---------------------------GDIP------------------------- 209

Query: 415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
             F    +++  +  F ++ +++    +   L   P  RPT  +   HPW+
Sbjct: 210 --FEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWM 258

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.3 bits (223), Expect = 1e-20
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 12/145 (8%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDP 100
             RY +  K+G G F  ++L  D      VA+K++     + +    E KI K +     
Sbjct: 6   GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQ-LHIESKIYKMM----- 59

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILV 160
                +  +          G +  MV E LG +L  L  +   R   L  V  +   ++ 
Sbjct: 60  QGGVGIPTIRWCGAE----GDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMIS 114

Query: 161 GLDHLHRELSIIHTDLKPENVLLMS 185
            ++++H   + IH D+KP+N L+  
Sbjct: 115 RIEYIH-SKNFIHRDVKPDNFLMGL 138

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 17/161 (10%), Positives = 37/161 (22%), Gaps = 43/161 (26%)

Query: 311 GNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDN 370
            +    Y++  N   T +Y      LG + S   DL S   +      G + +       
Sbjct: 161 THQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAAT 220

Query: 371 YDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF 430
                                                     ++       K+       
Sbjct: 221 ----------------------------------------KRQKYERISEKKMSTPIEVL 240

Query: 431 SEKDANDMADFLVPILDFVPEKRPTAA---QCLTHPWINVG 468
            +   ++ A +L        + +P  +   Q   + +   G
Sbjct: 241 CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 281

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (222), Expect = 1e-20
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 14/146 (9%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGD 99
            +    K+G G +  V+ A +  T   VALK        +     A+ EI +LK++    
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL---- 58

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
             +   +VKLLD           + +VFE+L ++L   +  +   G+PL ++K   F +L
Sbjct: 59  --NHPNIVKLLDVIHT----ENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLL 112

Query: 160 VGLDHLHRELSIIHTDLKPENVLLMS 185
            GL   H    ++H DLKP+N+L+ +
Sbjct: 113 QGLAFCHSH-RVLHRDLKPQNLLINT 137

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 2e-16
 Identities = 46/169 (27%), Positives = 64/169 (37%), Gaps = 23/169 (13%)

Query: 302 DLKCKLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFACICFELA 357
           +   KL DFG A       + +T+++ T  YR PE+LLG KY ST  D+WS  CI  E+ 
Sbjct: 138 EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV 197

Query: 358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF 417
           T   LF   S      + D L  +   LG     +  G     D+             + 
Sbjct: 198 TRRALFPGDS------EIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKV 251

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
            P                 D    L  +L + P KR +A   L HP+  
Sbjct: 252 VP-------------PLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQ 287

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.7 bits (222), Expect = 2e-20
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 16/149 (10%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIA 96
              +    ++G G F  V+ A D + S  VA+K      K +    +  + E++ L+++ 
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL- 72

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICF 156
                     ++    +           +V EY   +   L++    + +    +  +  
Sbjct: 73  -----RHPNTIQYRGCYLREH----TAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTH 122

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
             L GL +LH   ++IH D+K  N+LL  
Sbjct: 123 GALQGLAYLH-SHNMIHRDVKAGNILLSE 150

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.0 bits (158), Expect = 4e-12
 Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 53/204 (25%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGS---KYSTPADLWSFACICFELAT 358
               KL DFG+A       +  + T  +  PEV+L     +Y    D+WS    C ELA 
Sbjct: 151 PGLVKLGDFGSASIMAPANSF-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 209

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
                                                        N    L HI +    
Sbjct: 210 RKPPLFNM-------------------------------------NAMSALYHIAQNESP 232

Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAA 478
            L     +   +SE       +F+   L  +P+ RPT+   L H ++    R   P++  
Sbjct: 233 AL-----QSGHWSE----YFRNFVDSCLQKIPQDRPTSEVLLKHRFVL---RERPPTVIM 280

Query: 479 TQPQDTGGSISDKNRREKDEREAM 502
              Q T  ++ + +  +  + + +
Sbjct: 281 DLIQRTKDAVRELDNLQYRKMKKI 304

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 3e-20
 Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 14/159 (8%)

Query: 37  DTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIA 96
           D  +   Y     +G G F  V+ A    +   VA+K     + +      E++I++++ 
Sbjct: 15  DRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKN---RELQIMRKL- 70

Query: 97  EGDPDDKKCVVKLLDHFKHSG--PNGQHVCMVFEYLGENLLTLIKYADYRGVPL--HMVK 152
                D   +V+L   F  SG   +  ++ +V +Y+ E +  + ++       L    VK
Sbjct: 71  -----DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVK 125

Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
              + +   L ++H    I H D+KP+N+LL       K
Sbjct: 126 LYMYQLFRSLAYIH-SFGICHRDIKPQNLLLDPDTAVLK 163

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 2e-16
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 22/165 (13%)

Query: 305 CKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELATGDV 361
            KL DFG+A    +     + I +R YR PE++ G+  Y++  D+WS  C+  EL  G  
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQP 221

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
           +F   S        D L  ++++LG   R+       +   F       H     F P  
Sbjct: 222 IFPGDS------GVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRP-- 273

Query: 422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
                      +   +       +L++ P  R T  +   H + +
Sbjct: 274 -----------RTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 307

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (217), Expect = 5e-20
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 18/148 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEG 98
            + +   LG G F  V+LA + Q+   +ALKV   A             E++I   +   
Sbjct: 7   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL--- 63

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFH 157
                  +++L  +F  +      V ++ EY     +   ++                  
Sbjct: 64  ---RHPNILRLYGYFHDAT----RVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYITE 114

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           +   L + H    +IH D+KPEN+LL S
Sbjct: 115 LANALSYCH-SKRVIHRDIKPENLLLGS 141

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 3e-16
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 49/165 (29%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQ-TRQYRCPEVLLGSKYSTPADLWSFACICFELATGD 360
             + K+ DFG +          +  T  Y  PE++ G  +    DLWS   +C+E   G 
Sbjct: 142 AGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 201

Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL 420
             F+ ++               E                                     
Sbjct: 202 PPFEANT-------------YQET-----------------------------------Y 213

Query: 421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
            ++   ++ F +       D +  +L   P +RP   + L HPWI
Sbjct: 214 KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWI 258

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 87.9 bits (217), Expect = 7e-20
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 12/155 (7%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDP 100
              Y V  ++G G F  ++   +   +  VA+K +           DE +  K +A    
Sbjct: 4   GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-APQLRDEYRTYKLLA---- 58

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILV 160
                +  +    +     G H  +V + LG +L  L+     R   +  V      +L 
Sbjct: 59  -GCTGIPNVYYFGQE----GLHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLA 112

Query: 161 GLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK 195
            +  +H E S+++ D+KP+N L+      + +   
Sbjct: 113 RVQSIH-EKSLVYRDIKPDNFLIGRPNSKNANMIY 146

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 16/104 (15%)

Query: 306 KLVDFGNA----------CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE 355
            +VDFG               Y++  N   T +Y      LG + S   DL +   +   
Sbjct: 146 YVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMY 205

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALM------MELLGMMPRKIA 393
              G + +         +  + +          EL    P +  
Sbjct: 206 FLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFY 249

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (215), Expect = 1e-19
 Identities = 41/179 (22%), Positives = 59/179 (32%), Gaps = 24/179 (13%)

Query: 302 DLKCKLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELA 357
           +   KL DFG A       + +T+ + TR YR PE+L G++ Y    D+W+  CI  EL 
Sbjct: 136 NGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELL 195

Query: 358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF 417
                    S      D D L  + E LG    +         D+              F
Sbjct: 196 LRVPFLPGDS------DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIF 249

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSM 476
                              D+ D +  +  F P  R TA Q L   + +  P       
Sbjct: 250 SAAGD--------------DLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPTPGCQ 294

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 6e-18
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 18/143 (12%)

Query: 49  KLGWGHFSTVWLAWDTQTSHYVALKV------QKSAQHYTEAALDEIKILKQIAEGDPDD 102
            LG G F+TV+ A D  T+  VA+K        ++       AL EIK+L+++       
Sbjct: 5   FLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL------S 58

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
              ++ LLD F H      ++ +VF+++  +L  +IK       P H +K      L GL
Sbjct: 59  HPNIIGLLDAFGHKS----NISLVFDFMETDLEVIIKDNSLVLTPSH-IKAYMLMTLQGL 113

Query: 163 DHLHRELSIIHTDLKPENVLLMS 185
           ++LH+   I+H DLKP N+LL  
Sbjct: 114 EYLHQH-WILHRDLKPNNLLLDE 135

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.4 bits (216), Expect = 1e-19
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGDP 100
            Y  +  LG G FS V LA D +T   VA+K   +K+ +    +  +EI +L +I     
Sbjct: 10  IYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKI----- 64

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHIL 159
                +V L D ++  G    H+ ++ + + G  L   I   +           + F +L
Sbjct: 65  -KHPNIVALDDIYESGG----HLYLIMQLVSGGELFDRIV--EKGFYTERDASRLIFQVL 117

Query: 160 VGLDHLHRELSIIHTDLKPENVLLMSMIDPSK 191
             + +LH +L I+H DLKPEN+L  S+ + SK
Sbjct: 118 DAVKYLH-DLGIVHRDLKPENLLYYSLDEDSK 148

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.5 bits (167), Expect = 2e-13
 Identities = 39/183 (21%), Positives = 53/183 (28%), Gaps = 46/183 (25%)

Query: 302 DLKCKLVDFGNACW--TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           D K  + DFG +         +    T  Y  PEVL    YS   D WS   I + L  G
Sbjct: 146 DSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG 205

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              F                                       F +     +     +W 
Sbjct: 206 YPPFY-------------------------------DENDAKLFEQILKAEYEFDSPYWD 234

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAAT 479
                    D S+       DF+  +++  PEKR T  Q L HPWI     L +    + 
Sbjct: 235 ---------DISD----SAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSV 281

Query: 480 QPQ 482
             Q
Sbjct: 282 SEQ 284

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 2e-19
 Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGDP 100
           Y V   +G G +              +  K        +   +  + E+ +L+++     
Sbjct: 6   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL----- 60

Query: 101 DDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPL--HMVKEICFH 157
                +V+  D           + +V EY  G +L ++I         L    V  +   
Sbjct: 61  -KHPNIVRYYDRIID--RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQ 117

Query: 158 ILVGLDHLHRE----LSIIHTDLKPENVLLMS 185
           + + L   HR      +++H DLKP NV L  
Sbjct: 118 LTLALKECHRRSDGGHTVLHRDLKPANVFLDG 149

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (176), Expect = 1e-14
 Identities = 29/167 (17%), Positives = 52/167 (31%), Gaps = 50/167 (29%)

Query: 302 DLKCKLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT 358
               KL DFG A             + T  Y  PE +    Y+  +D+WS  C+ +EL  
Sbjct: 150 KQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCA 209

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
               F                          +++                   IR  +F 
Sbjct: 210 LMPPFT---------------------AFSQKEL----------------AGKIREGKFR 232

Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
            +       Y +S+    ++ + +  +L+     RP+  + L +P I
Sbjct: 233 RIP------YRYSD----ELNEIITRMLNLKDYHRPSVEEILENPLI 269

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 2e-19
 Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 24/176 (13%)

Query: 302 DLKCKLVDFGNA-------CWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACIC 353
           D   KL DFG A            ++TN + T  YR PE+LLG + Y  P DLW   CI 
Sbjct: 153 DGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIM 212

Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR 413
            E+ T   +   ++      ++  LAL+ +L G +  ++          +    +     
Sbjct: 213 AEMWTRSPIMQGNT------EQHQLALISQLCGSITPEV----------WPNVDNYELYE 256

Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP 469
           +L      K  ++    +        D +  +L   P +R  +   L H +    P
Sbjct: 257 KLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP 312

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 5e-19
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEG 98
            +Y   +K+G G F  V+ A   +T   VALK    +   + +   AL EIKIL+ +   
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
           +  +   + +              + +VF++   +L  L+     +   L  +K +   +
Sbjct: 70  NVVNLIEICR--TKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRVMQML 126

Query: 159 LVGLDHLHRELSIIHTDLKPENVLLMS 185
           L GL ++HR   I+H D+K  NVL+  
Sbjct: 127 LNGLYYIHRN-KILHRDMKAANVLITR 152

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.7 bits (209), Expect = 5e-19
 Identities = 30/145 (20%), Positives = 63/145 (43%), Gaps = 14/145 (9%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
              +  +LG G F  VW+ +    +  VA+K  K      +A L E  ++KQ+       
Sbjct: 14  TLKLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQL------Q 66

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVG 161
            + +V+L           + + ++ EY+   +L+  +K      + ++ + ++   I  G
Sbjct: 67  HQRLVRLYAVVTQ-----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEG 121

Query: 162 LDHLHRELSIIHTDLKPENVLLMSM 186
           +  +  E + IH DL+  N+L+   
Sbjct: 122 MAFIE-ERNYIHRDLRAANILVSDT 145

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 305 CKLVDFGNACW----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGD 360
           CK+ DFG A       Y          ++  PE +    ++  +D+WSF  +  E+ T  
Sbjct: 148 CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 207

Query: 361 VLFDPHS 367
            +  P  
Sbjct: 208 RIPYPGM 214

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (208), Expect = 1e-18
 Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 18/148 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAEG 98
            +     LG G FSTV LA +  TS   A+K+        ++       E  ++ ++   
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL--- 65

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFH 157
              D    VKL   F+        +     Y     LL  I+            +     
Sbjct: 66  ---DHPFFVKLYFTFQDDE----KLYFGLSYAKNGELLKYIR--KIGSFDETCTRFYTAE 116

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMS 185
           I+  L++LH    IIH DLKPEN+LL  
Sbjct: 117 IVSALEYLH-GKGIIHRDLKPENILLNE 143

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 2e-10
 Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 53/169 (31%)

Query: 302 DLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
           D+  ++ DFG A          +  + + T QY  PE+L        +DLW+  CI ++L
Sbjct: 144 DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQL 203

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
             G     P    N   +      +++L    P K                         
Sbjct: 204 VAG---LPPFRAGN---EYLIFQKIIKLEYDFPEKF------------------------ 233

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
            +P  + L+EK                 +L     KR    +   +  +
Sbjct: 234 -FPKARDLVEK-----------------LLVLDATKRLGCEEMEGYGPL 264

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.2 bits (210), Expect = 1e-18
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 15/149 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAEG 98
            + V   +G G F  V+      T    A+K     +   +     AL+E  +L  ++ G
Sbjct: 5   DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFH 157
              D   +V +   F         +  + + + G +L   +    +       ++     
Sbjct: 65  ---DCPFIVCMSYAFHTPD----KLSFILDLMNGGDLHYHLS--QHGVFSEADMRFYAAE 115

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMSM 186
           I++GL+H+H    +++ DLKP N+LL   
Sbjct: 116 IILGLEHMH-NRFVVYRDLKPANILLDEH 143

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 30/168 (17%), Positives = 48/168 (28%), Gaps = 52/168 (30%)

Query: 305 CKLVDFGNACWTYKQFTNDIQ-TRQYRCPEVLL-GSKYSTPADLWSFACICFELATGDVL 362
            ++ D G AC   K+  +    T  Y  PEVL  G  Y + AD +S  C+ F+L  G   
Sbjct: 146 VRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSP 205

Query: 363 FDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK 422
           F  H                                         D   I R+       
Sbjct: 206 FRQHK--------------------------------------TKDKHEIDRMTLTM--- 224

Query: 423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPT-----AAQCLTHPWI 465
                 +  +  + ++   L  +L     +R       A +    P+ 
Sbjct: 225 ----AVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFF 268

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 84.5 bits (208), Expect = 2e-18
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
            Y +  KLG G +S V+ A +   +  V +K+ K  +   +    EIKIL+ +       
Sbjct: 36  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK--KKIKREIKILENL-----RG 88

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
              ++ L D  K   P  +   +VFE++       +    Y+ +  + ++   + IL  L
Sbjct: 89  GPNIITLADIVKD--PVSRTPALVFEHVNNTDFKQL----YQTLTDYDIRFYMYEILKAL 142

Query: 163 DHLHRELSIIHTDLKPENVLLMS 185
           D+ H  + I+H D+KP NV++  
Sbjct: 143 DYCH-SMGIMHRDVKPHNVMIDH 164

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 83.7 bits (206), Expect = 3e-18
 Identities = 33/171 (19%), Positives = 72/171 (42%), Gaps = 13/171 (7%)

Query: 297 LLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACIC 353
           ++     K +L+D+G A + +  +++   + +R ++ PE+L+  + Y    D+WS  C+ 
Sbjct: 161 MIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCML 220

Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR 413
             +      F          + D L  + ++LG       +  +Y+ +   R  D+    
Sbjct: 221 ASMIFRKEPFFHG-----HDNYDQLVRIAKVLGT-EDLYDYIDKYNIELDPRFNDILGRH 274

Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPW 464
             + W        ++  S     +  DFL  +L +  + R TA + + HP+
Sbjct: 275 SRKRWERFVHSENQHLVSP----EALDFLDKLLRYDHQSRLTAREAMEHPY 321

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 3e-18
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
              +   +G G F  V L         VA+K  K+     +A L E  ++ Q+       
Sbjct: 8   ELKLLQTIGKGEFGDVMLGDYRGN--KVAVKCIKN-DATAQAFLAEASVMTQL------R 58

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVG 161
              +V+LL            + +V EY+   +L+  ++      +    + +    +   
Sbjct: 59  HSNLVQLLGVIVEEKG---GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 115

Query: 162 LDHLHRELSIIHTDLKPENVLL 183
           +++L    + +H DL   NVL+
Sbjct: 116 MEYLEGN-NFVHRDLAARNVLV 136

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 23/161 (14%), Positives = 43/161 (26%), Gaps = 46/161 (28%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDV 361
           D   K+ DFG                ++  PE L   K+ST +D+WSF  + +E+ +   
Sbjct: 139 DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSF-- 196

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
                                   G +P    +     +D   R   +    ++      
Sbjct: 197 ------------------------GRVP----YPRIPLKDVVPR---VEKGYKMDAPD-- 223

Query: 422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
                           + + +          RP+  Q    
Sbjct: 224 -------GCPP----AVYEVMKNCWHLDAAMRPSFLQLREQ 253

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.1 bits (202), Expect = 5e-18
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 12/146 (8%)

Query: 39  FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEG 98
            +     ++ KLG G +  V+     + S  VA+K  K      E  L E  ++K+I   
Sbjct: 14  MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI--- 70

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFH 157
                  +V+LL              ++ E++   NLL  ++  + + V   ++  +   
Sbjct: 71  ---KHPNLVQLLGVCTREP----PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQ 123

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           I   +++L +  + IH DL   N L+
Sbjct: 124 ISSAMEYLEK-KNFIHRDLAARNCLV 148

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 50/163 (30%)

Query: 302 DLKCKLVDFGNACW----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA 357
           +   K+ DFG +      TY          ++  PE L  +K+S  +D+W+F  + +E+A
Sbjct: 151 NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 210

Query: 358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF 417
           T  +   P            L+ + ELL    R                           
Sbjct: 211 TYGMSPYP---------GIDLSQVYELLEKDYR--------------------------- 234

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
                      +  E     + + +     + P  RP+ A+  
Sbjct: 235 ----------MERPEGCPEKVYELMRACWQWNPSDRPSFAEIH 267

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 81.5 bits (200), Expect = 8e-18
 Identities = 46/168 (27%), Positives = 66/168 (39%), Gaps = 23/168 (13%)

Query: 302 DLKCKLVDFGNACW---TYKQFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFELA 357
           + + K+ DFG A       +++T++I T  YR P+VL+GS KYST  D+WS  CI  E+ 
Sbjct: 136 EGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMV 195

Query: 358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF 417
            G  LF   S      + D L  +  +LG    K          +         +    F
Sbjct: 196 NGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESF 249

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                         E       D L  +L   P +R TA Q L H + 
Sbjct: 250 LK---------GLDE----SGIDLLSKMLKLDPNQRITAKQALEHAYF 284

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 78.8 bits (193), Expect = 6e-17
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 16/146 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGD 99
           +Y    K+G G +  V+ A +       ALK    +K  +      + EI ILK++    
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKEL---- 57

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
                 +VKL D         + + +VFE+L ++L  L+   +  G+     K     +L
Sbjct: 58  --KHSNIVKLYDVIHT----KKRLVLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLL 110

Query: 160 VGLDHLHRELSIIHTDLKPENVLLMS 185
            G+ + H +  ++H DLKP+N+L+  
Sbjct: 111 NGIAYCH-DRRVLHRDLKPQNLLINR 135

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 2e-17
 Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 20/149 (13%)

Query: 39  FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQI 95
             +G+  V  ++G G F TV+          VA+K+           +A  +E+ +L++ 
Sbjct: 5   IPDGQITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKT 61

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEI 154
                     ++  + +          + +V ++  G +L   +   + +   +  + +I
Sbjct: 62  ------RHVNILLFMGYS-----TAPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDI 109

Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
                 G+D+LH + SIIH DLK  N+ L
Sbjct: 110 ARQTAQGMDYLHAK-SIIHRDLKSNNIFL 137

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 50/169 (29%)

Query: 302 DLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLG---SKYSTPADLWSFACIC 353
           DL  K+ DFG A          QF     +  +  PEV+     + YS  +D+++F  + 
Sbjct: 140 DLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVL 199

Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR 413
           +EL TG + +                                     +  NR   +  + 
Sbjct: 200 YELMTGQLPYS------------------------------------NINNRDQIIFMVG 223

Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
           R    P      +           M   +   L    ++RP   Q L  
Sbjct: 224 RGYLSP------DLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS 266

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 2e-17
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 19/152 (12%)

Query: 42  GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPD 101
              V+Q  +G G F  VW          VA+K+  S +  +     EI     +      
Sbjct: 3   RTIVLQESIGKGRFGEVWRG--KWRGEEVAVKIFSSREERSWFREAEIYQTVML------ 54

Query: 102 DKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILV 160
             + ++  +            + +V +Y    +L   +       V +  + ++      
Sbjct: 55  RHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTAS 111

Query: 161 GLDHLHRE-------LSIIHTDLKPENVLLMS 185
           GL HLH E        +I H DLK +N+L+  
Sbjct: 112 GLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 143

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 2e-09
 Identities = 25/172 (14%), Positives = 47/172 (27%), Gaps = 39/172 (22%)

Query: 302 DLKCKLVDFGNACW-------TYKQFTNDIQTRQYRCPEVLLGS------KYSTPADLWS 348
           +  C + D G A               + + T++Y  PEVL  S      +    AD+++
Sbjct: 144 NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYA 203

Query: 349 FACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD 408
              + +E+A    +   H                                  D       
Sbjct: 204 MGLVFWEIARRCSIGGIHEDYQLPY--------------------------YDLVPSDPS 237

Query: 409 LRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
           +  +R++      +  I     S +    MA  +          R TA +  
Sbjct: 238 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIK 289

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 2e-17
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 49  KLGWGHFSTVWLAWD--TQTSHYVALKV--QKSAQHYTEAALDEIKILKQIAEGDPDDKK 104
           +LG G+F +V        +    VA+KV  Q + +  TE  + E +I+ Q+      D  
Sbjct: 16  ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL------DNP 69

Query: 105 CVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDH 164
            +V+L+   +      + + +V E  G   L          +P+  V E+   + +G+ +
Sbjct: 70  YIVRLIGVCQ-----AEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKY 124

Query: 165 LHRELSIIHTDLKPENVLLMS 185
           L  + + +H DL   NVLL++
Sbjct: 125 LEEK-NFVHRDLAARNVLLVN 144

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 5e-05
 Identities = 21/175 (12%), Positives = 48/175 (27%), Gaps = 55/175 (31%)

Query: 302 DLKCKLVDFGNACW------TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE 355
               K+ DFG +         Y   +      ++  PE +   K+S+ +D+WS+    +E
Sbjct: 145 RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWE 204

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL 415
             +                           G  P    +      +       +   +R+
Sbjct: 205 ALS--------------------------YGQKP----YKKMKGPEVMAF---IEQGKRM 231

Query: 416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAA---QCLTHPWINV 467
              P         +       ++   +     +  E RP      Q +   + ++
Sbjct: 232 ECPP---------ECPP----ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL 273

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 2e-17
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 19/152 (12%)

Query: 41  NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV-------QKSAQHYTEAALDEIKILK 93
           +  Y    +LG G F+ V    +  T    A K                E    E+ ILK
Sbjct: 9   DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 68

Query: 94  QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKE 153
           +I          V+ L + +++       V ++ E +    L     A+   +      E
Sbjct: 69  EI------QHPNVITLHEVYENKT----DVILILELVAGGEL-FDFLAEKESLTEEEATE 117

Query: 154 ICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
               IL G+ +LH  L I H DLKPEN++L+ 
Sbjct: 118 FLKQILNGVYYLH-SLQIAHFDLKPENIMLLD 148

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 8e-14
 Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 46/166 (27%)

Query: 302 DLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
             + K++DFG A       +F N   T ++  PE++        AD+WS   I + L +G
Sbjct: 153 KPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 212

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
              F   +       ++ LA +  +      +                         ++ 
Sbjct: 213 ASPFLGDT------KQETLANVSAVNYEFEDE-------------------------YFS 241

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI 465
                    + S        DF+  +L   P+KR T    L HPWI
Sbjct: 242 ---------NTSA----LAKDFIRRLLVKDPKKRMTIQDSLQHPWI 274

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 2e-17
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 17/167 (10%)

Query: 27  RGGYHAVRMGDTFKN--GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHY 81
           R  ++   +  T      RY   S +G G + +V  A+DT+T   VA+K       +  +
Sbjct: 1   RPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIH 60

Query: 82  TEAALDEIKILKQIAEGDPDDKKCVVKLLDHF--KHSGPNGQHVCMVFEYLGENLLTLIK 139
            +    E+++LK +        + V+ LLD F    S      V +V   +G +L  ++K
Sbjct: 61  AKRTYRELRLLKHM------KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK 114

Query: 140 YADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSM 186
               + +    V+ + + IL GL ++H    IIH DLKP N+ +   
Sbjct: 115 ---CQKLTDDHVQFLIYQILRGLKYIH-SADIIHRDLKPSNLAVNED 157

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 2e-16
 Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 18/180 (10%)

Query: 305 CKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELATGDVLF 363
            K++DFG A  T  + T  + TR YR PE++L    Y+   D+WS  CI  EL TG  LF
Sbjct: 160 LKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLF 219

Query: 364 DPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV 423
                       D L L++ L+G    ++      S    N    L  + ++ F  +   
Sbjct: 220 PGTD------HIDQLKLILRLVGTPGAEL-LKKISSESARNYIQSLTQMPKMNFANVFIG 272

Query: 424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMAATQPQD 483
                           D L  +L    +KR TAAQ L H +        +  +A    Q 
Sbjct: 273 ANP----------LAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDDEPVADPYDQS 322

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.5 bits (198), Expect = 3e-17
 Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEGD 99
           + +   LG G F  V L        Y A+KV K          E   DE  +L  +    
Sbjct: 6   FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV---- 61

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
                 ++++   F+      Q + M+ +Y+    L  +     R  P  + K     + 
Sbjct: 62  --THPFIIRMWGTFQD----AQQIFMIMDYIEGGELFSLLRKSQR-FPNPVAKFYAAEVC 114

Query: 160 VGLDHLHRELSIIHTDLKPENVLL 183
           + L++LH    II+ DLKPEN+LL
Sbjct: 115 LALEYLH-SKDIIYRDLKPENILL 137

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 29/169 (17%), Positives = 43/169 (25%), Gaps = 53/169 (31%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDV 361
           +   K+ DFG A +          T  Y  PEV+    Y+   D WSF  + +E+  G  
Sbjct: 140 NGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYT 199

Query: 362 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN 421
            F                           K                              
Sbjct: 200 PFY---------------------DSNTMKT---------------------------YE 211

Query: 422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKR-----PTAAQCLTHPWI 465
           K+L  +  F      D+ D L  ++     +R             HPW 
Sbjct: 212 KILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWF 260

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 6e-17
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 34/167 (20%)

Query: 43  RYVVQSKLGWGHFSTVWLAWD-----TQTSHYVALKV--QKSAQHYTEAALDEIKILKQI 95
           R      LG G F  V  A       +  +  VA+K+    +     EA + E+K+L  +
Sbjct: 24  RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYL 83

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIK--------------- 139
                 +   +V LL      GP      ++ EY    +LL  ++               
Sbjct: 84  G-----NHMNIVNLLGACTIGGP----TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 134

Query: 140 -YADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
              D   + L  +    + +  G+  L    + IH DL   N+LL  
Sbjct: 135 MEDDELALDLEDLLSFSYQVAKGMAFLA-SKNCIHRDLAARNILLTH 180

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 28/164 (17%), Positives = 43/164 (26%), Gaps = 50/164 (30%)

Query: 302 DLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
               K+ DFG A        Y    N     ++  PE +    Y+  +D+WS+    +EL
Sbjct: 181 GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 240

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
            +                                     G               + +  
Sbjct: 241 FS------------------------------------LGSSPYPGMPVDSKFYKMIKEG 264

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
           F  L           E    +M D +    D  P KRPT  Q +
Sbjct: 265 FRML---------SPEHAPAEMYDIMKTCWDADPLKRPTFKQIV 299

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 7e-17
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 12/141 (8%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
                 ++G G F  V L +       VA+K  +      E  ++E +++ ++       
Sbjct: 6   ELTFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGAMSEEDFIEEAEVMMKL------S 58

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGL 162
              +V+L             +C+VFE++    L+              +  +C  +  G+
Sbjct: 59  HPKLVQLYGVCLEQA----PICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGM 114

Query: 163 DHLHRELSIIHTDLKPENVLL 183
            +L  E  +IH DL   N L+
Sbjct: 115 AYLE-EACVIHRDLAARNCLV 134

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 6e-07
 Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 50/165 (30%)

Query: 302 DLKCKLVDFGNACW----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA 357
           +   K+ DFG   +     Y   T      ++  PEV   S+YS+ +D+WSF  + +E+ 
Sbjct: 137 NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 196

Query: 358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF 417
           +                                     G+   +  +    +  I     
Sbjct: 197 S------------------------------------EGKIPYENRSNSEVVEDISTG-- 218

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
                    +       +  +   +       PE RP  ++ L  
Sbjct: 219 --------FRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ 255

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 7e-17
 Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDD 102
              ++ KLG G F  VW+     T+  VA+K  K      EA L E +++K++       
Sbjct: 18  SLRLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL------R 70

Query: 103 KKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVG 161
            + +V+L           + + +V EY+   +LL  +K    + + L  + ++   I  G
Sbjct: 71  HEKLVQLYAVVSE-----EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASG 125

Query: 162 LDHLHRELSIIHTDLKPENVLL 183
           + ++ R ++ +H DL+  N+L+
Sbjct: 126 MAYVER-MNYVHRDLRAANILV 146

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 9e-09
 Identities = 34/185 (18%), Positives = 59/185 (31%), Gaps = 59/185 (31%)

Query: 302 DLKCKLVDFGNACW----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA 357
           +L CK+ DFG A       Y          ++  PE  L  +++  +D+WSF  +  EL 
Sbjct: 149 NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELT 208

Query: 358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF 417
           T                                ++ + G  +R+  ++   +    R+  
Sbjct: 209 TK------------------------------GRVPYPGMVNREVLDQ---VERGYRMPC 235

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSMA 477
            P         +  E     + D +       PE+RPT                LE    
Sbjct: 236 PP---------ECPE----SLHDLMCQCWRKEPEERPTFEYLQ---------AFLEDYFT 273

Query: 478 ATQPQ 482
           +T+PQ
Sbjct: 274 STEPQ 278

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 2e-16
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 17/149 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHY---VALKVQK--SAQHYTEAALDEIKILKQIAE 97
           R  +   +G G F  V         +    VA+K  K  ++    E  L E   ++Q   
Sbjct: 8   RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF-- 65

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFH 157
               D   +VKL+            V ++ E      L          + L  +    + 
Sbjct: 66  ----DHPHIVKLIGVITE-----NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQ 116

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLLMSM 186
           +   L +L      +H D+   NVL+ S 
Sbjct: 117 LSTALAYLE-SKRFVHRDIAARNVLVSSN 144

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 50/162 (30%)

Query: 305 CKLVDFGNACW----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGD 360
            KL DFG + +    TY + +      ++  PE +   ++++ +D+W F    +E+    
Sbjct: 147 VKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHG 206

Query: 361 VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPL 420
           V   P  G              +++G                      + +  RL   P 
Sbjct: 207 VK--PFQGVK----------NNDVIGR---------------------IENGERLPMPP- 232

Query: 421 NKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
                   +        +   +     + P +RP   +    
Sbjct: 233 --------NCPP----TLYSLMTKCWAYDPSRRPRFTELKAQ 262

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 2e-16
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 15/146 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGD 99
           +Y    K+G G + TV+ A + +T   VALK        +    +AL EI +LK++    
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL---- 58

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
               K +V+L D         + + +VFE+  ++L           +   +VK   F +L
Sbjct: 59  --KHKNIVRLHDVLHS----DKKLTLVFEFCDQDLKKYFDS-CNGDLDPEIVKSFLFQLL 111

Query: 160 VGLDHLHRELSIIHTDLKPENVLLMS 185
            GL   H   +++H DLKP+N+L+  
Sbjct: 112 KGLGFCHSR-NVLHRDLKPQNLLINR 136

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 2e-16
 Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 22/169 (13%)

Query: 302 DLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICFELA 357
           + + KL +FG A       + ++ ++ T  YR P+VL G+K YST  D+WS  CI  ELA
Sbjct: 137 NGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELA 196

Query: 358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF 417
                  P      +  +D L  +  LLG    +         D+             + 
Sbjct: 197 NAGRPLFPG-----NDVDDQLKRIFRLLGTPTEEQWPSMTKLPDY-------------KP 238

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN 466
           +P+        +   K      D L  +L   P +R +A + L HP+ +
Sbjct: 239 YPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFS 287

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 3e-16
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 39/170 (22%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSH-----YVALKV--QKSAQHYTEAALDEIKILKQI 95
                  LG G F  V  A     S       VA+K+  +K+     EA + E+K++ Q+
Sbjct: 38  NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQL 97

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIK--------------- 139
                   + +V LL     SG     + ++FEY    +LL  ++               
Sbjct: 98  G-----SHENIVNLLGACTLSG----PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYEN 148

Query: 140 ------YADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
                   D   +    +    + +  G++ L    S +H DL   NVL+
Sbjct: 149 QKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE-FKSCVHRDLAARNVLV 197

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 50/166 (30%)

Query: 302 DLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
               K+ DFG A        Y    N     ++  PE L    Y+  +D+WS+  + +E+
Sbjct: 200 GKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEI 259

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
            +  V   P+ G   D                                   +   + +  
Sbjct: 260 FSLGVN--PYPGIPVDA----------------------------------NFYKLIQNG 283

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
           F         K D       ++   +     F   KRP+     + 
Sbjct: 284 F---------KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF 320

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 6e-16
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
                +LG G F  V      +  + VA+K+ K      +  ++E K++  +        
Sbjct: 6   LTFLKELGTGQFGVVKYGKW-RGQYDVAIKMIKEGSMSEDEFIEEAKVMMNL------SH 58

Query: 104 KCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLD 163
           + +V+L             + ++ EY+    L               + E+C  +   ++
Sbjct: 59  EKLVQLYGVCTKQR----PIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAME 114

Query: 164 HLHRELSIIHTDLKPENVLLMS 185
           +L  +   +H DL   N L+  
Sbjct: 115 YLESK-QFLHRDLAARNCLVND 135

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 4e-07
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 50/165 (30%)

Query: 302 DLKCKLVDFGNACW----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA 357
               K+ DFG + +     Y          ++  PEVL+ SK+S+ +D+W+F  + +E+ 
Sbjct: 136 QGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIY 195

Query: 358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF 417
           +                                     G+   + F       HI +   
Sbjct: 196 S------------------------------------LGKMPYERFTNSETAEHIAQGLR 219

Query: 418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
                +  E           +   +        ++RPT    L++
Sbjct: 220 LYRPHLASE----------KVYTIMYSCWHEKADERPTFKILLSN 254

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.8 bits (188), Expect = 6e-16
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 16/146 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAEG 98
           ++     LG G F  V L    ++ ++ A+K+    +       E  L+E +IL+ +   
Sbjct: 42  QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV--- 98

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHI 158
              +   +VKL   FK    N     ++    G  + + ++            +     I
Sbjct: 99  ---NFPFLVKLEFSFKD---NSNLYMVMEYVAGGEMFSHLR--RIGRFSEPHARFYAAQI 150

Query: 159 LVGLDHLHRELSIIHTDLKPENVLLM 184
           ++  ++LH  L +I+ DLKPEN+L+ 
Sbjct: 151 VLTFEYLH-SLDLIYRDLKPENLLID 175

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (124), Expect = 6e-08
 Identities = 27/174 (15%), Positives = 46/174 (26%), Gaps = 53/174 (30%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
           LL       ++ DFG A     +      T +   PE++L   Y+   D W+   + +E+
Sbjct: 172 LLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEM 231

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
           A G   F                  +++   +                            
Sbjct: 232 AAGYPPFFADQ-------------PIQIYEKIVS-------------------------- 252

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKR-----PTAAQCLTHPWI 465
                     K  F    ++D+ D L  +L     KR             H W 
Sbjct: 253 ---------GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWF 297

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 3e-15
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 17/145 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEG 98
            +++   LG G F  V+LA   +T+ + A+K  K          E  + E ++L      
Sbjct: 3   DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-- 60

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFH 157
              +   +  +   F+       ++  V EYL G +L+  I+        L         
Sbjct: 61  ---EHPFLTHMFCTFQTKE----NLFFVMEYLNGGDLMYHIQ--SCHKFDLSRATFYAAE 111

Query: 158 ILVGLDHLHRELSIIHTDLKPENVL 182
           I++GL  LH    I++ DLK +N+L
Sbjct: 112 IILGLQFLH-SKGIVYRDLKLDNIL 135

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 3e-11
 Identities = 34/174 (19%), Positives = 52/174 (29%), Gaps = 52/174 (29%)

Query: 297 LLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC 353
           +L   D   K+ DFG          +      T  Y  PE+LLG KY+   D WSF  + 
Sbjct: 134 ILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLL 193

Query: 354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIR 413
           +E+  G   F       + +DE+ L                                   
Sbjct: 194 YEMLIGQSPF-------HGQDEEEL----------------------------------- 211

Query: 414 RLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAA-QCLTHPWIN 466
                  + + ++   +      +  D LV +    PEKR         HP   
Sbjct: 212 ------FHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFR 259

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (181), Expect = 4e-15
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 16/146 (10%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSH---YVALKVQKSA--QHYTEAALDEIKILKQIAE 97
              ++  +G G F  V             +VA+K  KS   +      L E  I+ Q   
Sbjct: 27  CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF-- 84

Query: 98  GDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFH 157
               D   V+ L      S      V ++ E++    L      +     +  +  +   
Sbjct: 85  ----DHPNVIHLEGVVTKST----PVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRG 136

Query: 158 ILVGLDHLHRELSIIHTDLKPENVLL 183
           I  G+ +L   ++ +H DL   N+L+
Sbjct: 137 IAAGMKYLAD-MNYVHRDLAARNILV 161

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 302 DLKCKLVDFGNACW--------TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC 353
           +L CK+ DFG + +        TY          ++  PE +   K+++ +D+WS+  + 
Sbjct: 164 NLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVM 223

Query: 354 FELAT 358
           +E+ +
Sbjct: 224 WEVMS 228

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 2e-14
 Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 19/149 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSH---YVALKVQK----SAQHYTEAALDEIKILKQI 95
              +  KLG G F  V        S     VA+K  K    S     +  + E+  +  +
Sbjct: 9   DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL 68

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEIC 155
                 D + +++L             + MV E      L            L  +    
Sbjct: 69  ------DHRNLIRLYGVVLT-----PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYA 117

Query: 156 FHILVGLDHLHRELSIIHTDLKPENVLLM 184
             +  G+ +L      IH DL   N+LL 
Sbjct: 118 VQVAEGMGYLE-SKRFIHRDLAARNLLLA 145

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 6e-05
 Identities = 32/170 (18%), Positives = 47/170 (27%), Gaps = 51/170 (30%)

Query: 297 LLAAVDLKCKLVDFGNACWTYKQFTNDIQ------TRQYRCPEVLLGSKYSTPADLWSFA 350
           LL A     K+ DFG      +   + +          +  PE L    +S  +D W F 
Sbjct: 142 LLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFG 201

Query: 351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR 410
              +E+ T      P  G N            ++L     KI   G              
Sbjct: 202 VTLWEMFTYGQE--PWIGLN----------GSQIL----HKIDKEG-------------- 231

Query: 411 HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
                          E+    E    D+ + +V      PE RPT     
Sbjct: 232 ---------------ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALR 266

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 18/142 (12%)

Query: 49  KLGWGHFSTVWLAW--DTQTSHYVALKV---QKSAQHYTEAALDEIKILKQIAEGDPDDK 103
           +LG G+F TV   +    +    VA+K+   + +     +  L E  +++Q+      D 
Sbjct: 14  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL------DN 67

Query: 104 KCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLD 163
             +V+++   +      +   +V E      L        R V    + E+   + +G+ 
Sbjct: 68  PYIVRMIGICEA-----ESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSMGMK 121

Query: 164 HLHRELSIIHTDLKPENVLLMS 185
           +L    + +H DL   NVLL++
Sbjct: 122 YLEES-NFVHRDLAARNVLLVT 142

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 55/175 (31%)

Query: 302 DLKCKLVDFGNA------CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE 355
               K+ DFG +         YK  T+     ++  PE +   K+S+ +D+WSF  + +E
Sbjct: 143 QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE 202

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL 415
             +      P+ G              E+  M+ +                         
Sbjct: 203 AFSYGQK--PYRGMK----------GSEVTAMLEKG------------------------ 226

Query: 416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQ---CLTHPWINV 467
                     E+         +M D +     +  E RP  A     L + + +V
Sbjct: 227 ----------ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 271

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 1e-13
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 29/162 (17%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQK----SAQHYTEAALDEIKILKQIAEG 98
               Q  +G G+F  V  A   +    +   +++    +++        E+++L ++   
Sbjct: 11  DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-- 68

Query: 99  DPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIK--------------YADY 143
                  ++ LL   +H G    ++ +  EY    NLL  ++               +  
Sbjct: 69  ---HHPNIINLLGACEHRG----YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 121

Query: 144 RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             +    +      +  G+D+L  +   IH DL   N+L+  
Sbjct: 122 STLSSQQLLHFAADVARGMDYLS-QKQFIHRDLAARNILVGE 162

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 48/163 (29%)

Query: 302 DLKCKLVDFGNA--CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATG 359
           +   K+ DFG +     Y + T      ++   E L  S Y+T +D+WS+  + +E+ + 
Sbjct: 163 NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSL 222

Query: 360 DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWP 419
                P+ G              EL   +P+                             
Sbjct: 223 GGT--PYCGMT----------CAELYEKLPQG---------------------------- 242

Query: 420 LNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
                  + +      +++ D +       P +RP+ AQ L  
Sbjct: 243 ------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS 279

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 2e-13
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 18/153 (11%)

Query: 39  FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKV------QKSAQHYTEAALDEIKIL 92
            K   +     LG G F TV+          V + V      + ++    +  LDE  ++
Sbjct: 6   LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 65

Query: 93  KQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVK 152
             +      D   V +LL     S      V ++ + +    L          +    + 
Sbjct: 66  ASV------DNPHVCRLLGICLTS-----TVQLITQLMPFGCLLDYVREHKDNIGSQYLL 114

Query: 153 EICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
             C  I  G+++L     ++H DL   NVL+ +
Sbjct: 115 NWCVQIAKGMNYLEDR-RLVHRDLAARNVLVKT 146

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 22/166 (13%), Positives = 42/166 (25%), Gaps = 51/166 (30%)

Query: 302 DLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
               K+ DFG A                   ++   E +L   Y+  +D+WS+    +EL
Sbjct: 147 PQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWEL 206

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
            T      P+ G              E+  ++ +                          
Sbjct: 207 MTFGSK--PYDGIP----------ASEISSILEKG------------------------- 229

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
                    E+         D+   +V       + RP   + +  
Sbjct: 230 ---------ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE 266

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 2e-13
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKV----QKSAQHYTEAALDEIKILKQIAEGD 99
           +     LG G F  V L  +  T  Y A+K+       A+      + E ++L+      
Sbjct: 7   FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT---- 62

Query: 100 PDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHIL 159
                 +  L   F+    + +   ++    G  L   +     R       +     I+
Sbjct: 63  --RHPFLTALKYAFQT---HDRLCFVMEYANGGELFFHLS--RERVFTEERARFYGAEIV 115

Query: 160 VGLDHLHRELSIIHTDLKPENVLLMS 185
             L++LH    +++ D+K EN++L  
Sbjct: 116 SALEYLH-SRDVVYRDIKLENLMLDK 140

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 1e-08
 Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 56/172 (32%)

Query: 302 DLKCKLVDFGNA---CWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAT 358
           D   K+ DFG                 T +Y  PEVL  + Y    D W    + +E+  
Sbjct: 141 DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC 200

Query: 359 GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFW 418
           G + F          ++DH  L                                      
Sbjct: 201 GRLPF---------YNQDHERL-------------------------------------- 213

Query: 419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWI 465
               +L+E+  F    + +    L  +L   P++R       A + + H + 
Sbjct: 214 -FELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFF 264

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 3e-13
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 34/167 (20%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSH-------YVALKV--QKSAQHYTEAALDEIKILK 93
           R V+   LG G F  V LA               VA+K+    + +      + E++++K
Sbjct: 14  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 73

Query: 94  QIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGV------ 146
            I        K ++ LL            + ++ EY    NL   ++     G+      
Sbjct: 74  MI-----GKHKNIINLLGACTQ----DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNP 124

Query: 147 --------PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
                       +    + +  G+++L      IH DL   NVL+  
Sbjct: 125 SHNPEEQLSSKDLVSCAYQVARGMEYLA-SKKCIHRDLAARNVLVTE 170

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 32/164 (19%), Positives = 51/164 (31%), Gaps = 51/164 (31%)

Query: 302 DLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
           D   K+ DFG A        YK+ TN     ++  PE L    Y+  +D+WSF  + +E+
Sbjct: 171 DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 230

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
            T                           G  P    + G    + F    +        
Sbjct: 231 FTL--------------------------GGSP----YPGVPVEELFKLLKE-------- 252

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCL 460
                     + D      N++   +      VP +RPT  Q +
Sbjct: 253 --------GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLV 288

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 1e-12
 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 19/149 (12%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ-----HYTEAALDEIKILKQ 94
            + +   LG G +  V+L        T    A+KV K A        TE    E ++L+ 
Sbjct: 25  NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 84

Query: 95  IAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEI 154
           I          +V L   F+        + ++ +Y+    L        R    H V+  
Sbjct: 85  I-----RQSPFLVTLHYAFQTET----KLHLILDYINGGELFTHLSQRER-FTEHEVQIY 134

Query: 155 CFHILVGLDHLHRELSIIHTDLKPENVLL 183
              I++ L+HLH +L II+ D+K EN+LL
Sbjct: 135 VGEIVLALEHLH-KLGIIYRDIKLENILL 162

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 55/176 (31%)

Query: 302 DLKCKLVDFGNACWTYKQFTNDIQTRQ----YRCPEVLLGSK--YSTPADLWSFACICFE 355
           +    L DFG +       T           Y  P+++ G    +    D WS   + +E
Sbjct: 165 NGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYE 224

Query: 356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRL 415
           L TG   F        D +++  A +                                  
Sbjct: 225 LLTGASPFTV------DGEKNSQAEIS--------------------------------- 245

Query: 416 RFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWIN 466
                 ++L  +  + ++ +    D +  +L   P+KR       A +   H +  
Sbjct: 246 -----RRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQ 296

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 63.6 bits (154), Expect = 3e-12
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 44  YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDK 103
             +   +G G  S V+  +         +K  K        +  ++K  +   +      
Sbjct: 2   DAIGKLMGEGKESAVFNCYSE-KFGECVVKFHKVGH----TSFKKVKEKRDYGDLHFSVL 56

Query: 104 KCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLT-LIKYADYRGVPLHMVKEICFHILVGL 162
                  +        G  V  V+ + G  +L  LI   +   V +    E+   IL  +
Sbjct: 57  AIRSARNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEV 116

Query: 163 DHLHRELSIIHTDLKPENVLLMSM 186
              +    I+H DL   NVL+   
Sbjct: 117 AKFYHR-GIVHGDLSQYNVLVSEE 139

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 1e-11
 Identities = 25/146 (17%), Positives = 42/146 (28%), Gaps = 15/146 (10%)

Query: 49  KLGWGHFSTVWLAWDTQTSH---YVALKVQK--SAQHYTEAALDEIKILKQIAEGDPDDK 103
            +G GHF  V+            + A+K     +        L E  I+K          
Sbjct: 34  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF------SH 87

Query: 104 KCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLD 163
             V+ LL     S        +V  Y+    L      +     +  +      +  G+ 
Sbjct: 88  PNVLSLLGICLRSE---GSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMK 144

Query: 164 HLHRELSIIHTDLKPENVLLMSMIDP 189
            L  +   +H DL   N +L      
Sbjct: 145 FLASK-KFVHRDLAARNCMLDEKFTV 169

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 8e-07
 Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 53/168 (31%)

Query: 302 DLKCKLVDFGNACW-------TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF 354
               K+ DFG A         +    T      ++   E L   K++T +D+WSF  + +
Sbjct: 166 KFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLW 225

Query: 355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRR 414
           EL T                                   +    + D        R + +
Sbjct: 226 ELMTRGAPP------------------------------YPDVNTFDITVYLLQGRRLLQ 255

Query: 415 LRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
             + P                + + + ++       E RP+ ++ ++ 
Sbjct: 256 PEYCP----------------DPLYEVMLKCWHPKAEMRPSFSELVSR 287

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 3e-11
 Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 27/159 (16%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKV--QKSAQHYTEAALDEIKILKQI 95
           +  +  +LG G F  V+          +    VA+K   + ++       L+E  ++K+ 
Sbjct: 21  KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF 80

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGV-------- 146
                 +   VV+LL         GQ   ++ E +   +L + ++               
Sbjct: 81  ------NCHHVVRLLGVVSQ----GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPP 130

Query: 147 PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMS 185
            L  + ++   I  G+ +L+     +H DL   N ++  
Sbjct: 131 SLSKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCMVAE 168

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 51/166 (30%)

Query: 302 DLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
           D   K+ DFG          Y++    +   ++  PE L    ++T +D+WSF  + +E+
Sbjct: 169 DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEI 228

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
           AT      P+ G + ++              + R +  GG                    
Sbjct: 229 ATLAEQ--PYQGLSNEQ--------------VLRFVMEGGL------------------- 253

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
                       D  +   + + + +     + P+ RP+  + ++ 
Sbjct: 254 -----------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS 288

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 4e-11
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 41/171 (23%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKV--QKSAQHYTEAALDEIKILKQI 95
                  +G G F  V+ A        +    VA+K+  ++++         E  ++ + 
Sbjct: 14  NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF 73

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGV-------- 146
                 D   +VKLL         G+ +C++FEY+   +L   ++      V        
Sbjct: 74  ------DNPNIVKLLGVCAV----GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDL 123

Query: 147 --------------PLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
                                I   +  G+ +L      +H DL   N L+
Sbjct: 124 STRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-KFVHRDLATRNCLV 173

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 4e-07
 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 302 DLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
           ++  K+ DFG +        YK   ND    ++  PE +  ++Y+T +D+W++  + +E+
Sbjct: 176 NMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEI 235

Query: 357 ATGDVLFDPHSGDNYDR 373
            +      P+ G  ++ 
Sbjct: 236 FSYG--LQPYYGMAHEE 250

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 1e-10
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 17/149 (11%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSH----YVALKV--QKSAQHYTEAALDEIKILKQIA 96
               Q  +G G F  V+      +S      VA+K       +      L E  I+ Q  
Sbjct: 8   CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF- 66

Query: 97  EGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICF 156
                    +++L           + + ++ EY+    L            +  +  +  
Sbjct: 67  -----SHHNIIRLEGVISK----YKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLR 117

Query: 157 HILVGLDHLHRELSIIHTDLKPENVLLMS 185
            I  G+ +L   ++ +H DL   N+L+ S
Sbjct: 118 GIAAGMKYLAN-MNYVHRDLAARNILVNS 145

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 302 DLKCKLVDFGNACW------TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE 355
           +L CK+ DFG +             +      ++  PE +   K+++ +D+WSF  + +E
Sbjct: 146 NLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWE 205

Query: 356 LATGDVLFDPHSGDN 370
           + T          ++
Sbjct: 206 VMTYGERPYWELSNH 220

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 2e-10
 Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 31/163 (19%)

Query: 43  RYVVQSKLGWGHFSTVWLAWDTQTSH-----YVALKV--QKSAQHYTEAALDEIKILKQI 95
           R  +   LG G F  V  A             VA+K+  + +      A + E+KIL   
Sbjct: 14  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH- 72

Query: 96  AEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVP------- 147
                     VV LL         G  + ++ E+    NL T ++      VP       
Sbjct: 73  ----IGHHLNVVNLLGACTKP---GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPED 125

Query: 148 -------LHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLL 183
                  L  +    F +  G++ L      IH DL   N+LL
Sbjct: 126 LYKDFLTLEHLICYSFQVAKGMEFLA-SRKCIHRDLAARNILL 167

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 50/166 (30%)

Query: 302 DLKCKLVDFGNACW-----TYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL 356
               K+ DFG A        Y +  +     ++  PE +    Y+  +D+WSF  + +E+
Sbjct: 170 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 229

Query: 357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR 416
            +      P                +++     R++  G R                   
Sbjct: 230 FSLGASPYPG---------------VKIDEEFCRRLKEGTR------------------- 255

Query: 417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH 462
                          +    +M   ++      P +RPT ++ + H
Sbjct: 256 -----------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 290

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	530
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.91
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.15
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.61
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.54
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	97.07
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	96.25
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.23

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-59  Score=452.30  Aligned_cols=250  Identities=24%  Similarity=0.417  Sum_probs=212.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|++.+.||+|+||+||+|+++.+++.||||++.+.    ......+.+|+++|+++      +|||||+++++|.  
T Consensus         5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~~~~~~~--   76 (263)
T d2j4za1           5 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL------RHPNILRLYGYFH--   76 (263)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC------CCTTBCCEEEEEE--
T ss_pred             hhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhc------CCCCCCeEEEEEE--
Confidence            46899999999999999999999999999999998653    23456788999999999      7899999999999  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        +...+||||||| +++|.+++...  ..+++..++.|+.||+.||+|||++ |||||||||+||||+.          
T Consensus        77 --~~~~~~ivmEy~~~g~L~~~l~~~--~~l~e~~~~~i~~qi~~al~~lH~~-~ivHrDiKp~Nill~~----------  141 (263)
T d2j4za1          77 --DATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSK-RVIHRDIKPENLLLGS----------  141 (263)
T ss_dssp             --CSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT----------
T ss_pred             --ECCEEEEEEeecCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeeeeccccceecC----------
Confidence              457899999999 88999999753  3499999999999999999999997 9999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (263)
T d2j4za1         142 --------------------------------------------------------------------------------  141 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                                ++.+||+|||+|..... .....+||+.|+|||++.+..|+.++|||||||++|
T Consensus       142 --------------------------~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvily  195 (263)
T d2j4za1         142 --------------------------AGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCY  195 (263)
T ss_dssp             --------------------------TSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHH
T ss_pred             --------------------------CCCEeecccceeeecCCCcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHH
Confidence                                      46799999999976433 345568999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|++||.+.+      ....+..+                                          ....+.++...
T Consensus       196 ell~G~~Pf~~~~------~~~~~~~i------------------------------------------~~~~~~~p~~~  227 (263)
T d2j4za1         196 EFLVGKPPFEANT------YQETYKRI------------------------------------------SRVEFTFPDFV  227 (263)
T ss_dssp             HHHHSSCTTCCSS------HHHHHHHH------------------------------------------HTTCCCCCTTS
T ss_pred             HHhcCCCCCCCCC------HHHHHHHH------------------------------------------HcCCCCCCccC
Confidence            9999999996433      11111111                                          11223345566


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      ++++.+||.+||+.||.+|||++|+|+||||+.
T Consensus       228 s~~~~~li~~~L~~dp~~R~t~~eil~hp~~~~  260 (263)
T d2j4za1         228 TEGARDLISRLLKHNPSQRPMLREVLEHPWITA  260 (263)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHHccCCHhHCcCHHHHHcCcCcCC
Confidence            789999999999999999999999999999974

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-57  Score=459.80  Aligned_cols=329  Identities=49%  Similarity=0.907  Sum_probs=275.1

Q ss_pred             ccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCC-----CCc
Q 045988           30 YHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPD-----DKK  104 (530)
Q Consensus        30 ~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~-----~h~  104 (530)
                      |||+.+|+.|.++||+++++||+|+||+||+|+++.+|+.||||++++.....+...+|+++++.+.|.+..     .|+
T Consensus         1 ~~p~~~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~   80 (362)
T d1q8ya_           1 YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGAN   80 (362)
T ss_dssp             CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHT
T ss_pred             CCCCCCCCCccCCcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcC
Confidence            899999999988999999999999999999999999999999999998766677889999999999887643     478


Q ss_pred             ceeEecceeeecCCCCcEEEEEEecc--CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEE
Q 045988          105 CVVKLLDHFKHSGPNGQHVCMVFEYL--GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       105 ~Iv~~~~~~~~~~~~~~~~~lVmE~~--~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NIL  182 (530)
                      |||++++++...+.  ...+++|+++  .++............+++..++.++.||+.||+|||++.||+||||||+|||
T Consensus        81 ~iv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIl  158 (362)
T d1q8ya_          81 HILKLLDHFNHKGP--NGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVL  158 (362)
T ss_dssp             TBCCCCEEEEEEET--TEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEE
T ss_pred             ceEEEEEEeeeccc--cceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHee
Confidence            99999999987643  4455555555  5566666665666679999999999999999999998449999999999999


Q ss_pred             EeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 045988          183 LMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDS  262 (530)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (530)
                      |+......                                                                        
T Consensus       159 l~~~~~~~------------------------------------------------------------------------  166 (362)
T d1q8ya_         159 MEIVDSPE------------------------------------------------------------------------  166 (362)
T ss_dssp             EEEEETTT------------------------------------------------------------------------
T ss_pred             eeccCccc------------------------------------------------------------------------
Confidence            96531100                                                                        


Q ss_pred             cccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCC
Q 045988          263 VEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYST  342 (530)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~  342 (530)
                                                            ....++++|||.|..........+||+.|+|||++.+..|+.
T Consensus       167 --------------------------------------~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  208 (362)
T d1q8ya_         167 --------------------------------------NLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGC  208 (362)
T ss_dssp             --------------------------------------TEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCT
T ss_pred             --------------------------------------ccceeeEeecccccccccccccccccccccChhhccccCCCc
Confidence                                                  024589999999987777777889999999999999999999


Q ss_pred             cchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchh
Q 045988          343 PADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       343 ~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      ++||||+||++++|++|++||.+..........+.+..++..+|..|..++........+|........+.....++...
T Consensus       209 ~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (362)
T d1q8ya_         209 GADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLED  288 (362)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHH
T ss_pred             cccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhh
Confidence            99999999999999999999988776666667888999999999999999888888888888888877777777777788


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      .......+....++++.|||.+||++||.+||||+|||+||||++...
T Consensus       289 ~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~~  336 (362)
T d1q8ya_         289 VLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLG  336 (362)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTT
T ss_pred             hcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCCC
Confidence            888888888899999999999999999999999999999999996543

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-58  Score=448.41  Aligned_cols=253  Identities=26%  Similarity=0.327  Sum_probs=206.1

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|+++++||+|+||+||+|+++.+|+.||||++....  ...+.+.+|+++|++|      +|||||+++++|..   
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l------~HpnIv~~~~~~~~---   74 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML------NHENVVKFYGHRRE---   74 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTC------CCTTBCCEEEEEEE---
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhC------CCCCEeeEeeeecc---
Confidence            368999999999999999999999999999999987543  2345688999999999      78999999999994   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ...+||||||| +++|.+++..  ...+++..++.|+.||+.||+|||++ |||||||||+|||++.            
T Consensus        75 -~~~~~ivmEy~~gg~L~~~l~~--~~~l~e~~~~~i~~qi~~al~ylH~~-~IiHrDiKp~NILl~~------------  138 (271)
T d1nvra_          75 -GNIQYLFLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHGI-GITHRDIKPENLLLDE------------  138 (271)
T ss_dssp             -TTEEEEEEECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECT------------
T ss_pred             -CceeEEEEeccCCCcHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHc-CCccCcccHHHEEECC------------
Confidence             47899999999 8899998853  34599999999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (271)
T d1nvra_         139 --------------------------------------------------------------------------------  138 (271)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-----cccCCCCCCCCccCChhhcCCCC-CCcchhHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-----KQFTNDIQTRQYRCPEVLLGSKY-STPADLWSFAC  351 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-----~~~~~~~gt~~y~aPE~l~~~~~-~~~~DiWSlG~  351 (530)
                                              ++.+||+|||+|....     ......+||+.|+|||++.+..| +.++|||||||
T Consensus       139 ------------------------~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGv  194 (271)
T d1nvra_         139 ------------------------RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGI  194 (271)
T ss_dssp             ------------------------TCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHH
Confidence                                    4579999999997542     22456789999999999998876 67899999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|++||...+.      ..........  ...                                     .....
T Consensus       195 ilyeml~G~~pf~~~~~------~~~~~~~~~~--~~~-------------------------------------~~~~~  229 (271)
T d1nvra_         195 VLTAMLAGELPWDQPSD------SCQEYSDWKE--KKT-------------------------------------YLNPW  229 (271)
T ss_dssp             HHHHHHHSSCSCSSSST------TSHHHHHHHT--TCT-------------------------------------TSTTG
T ss_pred             HHHHHHhCCCCCCCCCh------HHHHHHHHhc--CCC-------------------------------------CCCcc
Confidence            99999999999964431      1111111100  000                                     00112


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      ...++++.+||.+||+.||.+|||++|+|+||||+.
T Consensus       230 ~~~s~~~~~li~~~L~~dP~~R~t~~eil~hpwf~~  265 (271)
T d1nvra_         230 KKIDSAPLALLHKILVENPSARITIPDIKKDRWYNK  265 (271)
T ss_dssp             GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTC
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCc
Confidence            345688999999999999999999999999999985

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-57  Score=449.85  Aligned_cols=254  Identities=27%  Similarity=0.424  Sum_probs=213.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|+++++||+|+||+||+|+++.+|+.||||+++... ...+.+.+|+.+|+++      +|||||+++++|..    
T Consensus        19 ~~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~~~----   88 (293)
T d1yhwa1          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN------KNPNIVNYLDSYLV----   88 (293)
T ss_dssp             TTTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHC------CCTTBCCEEEEEEE----
T ss_pred             ccccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhC------CCCCEeeEeEEEEE----
Confidence            368999999999999999999999999999999987543 3456789999999999      78999999999994    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ..++||||||| +++|.+++..   ..+++..++.|+.||+.||+|||++ |||||||||+|||++.             
T Consensus        89 ~~~~~ivmEy~~gg~L~~~~~~---~~l~~~~~~~i~~qi~~aL~yLH~~-~iiHrDiKp~NILl~~-------------  151 (293)
T d1yhwa1          89 GDELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLGM-------------  151 (293)
T ss_dssp             TTEEEEEEECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT-------------
T ss_pred             CCEEEEEEEecCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHC-CCcccCCcHHHeEECC-------------
Confidence            47899999999 8899988753   3599999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (293)
T d1yhwa1         152 --------------------------------------------------------------------------------  151 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             ++.+||+|||+|+...   ......+||+.|+|||++.+..|+.++|||||||++|+
T Consensus       152 -----------------------~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilye  208 (293)
T d1yhwa1         152 -----------------------DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE  208 (293)
T ss_dssp             -----------------------TCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHH
T ss_pred             -----------------------CCcEeeccchhheeeccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHH
Confidence                                   4679999999997643   23456689999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||.+.+      ....+..+... +.+                                      .+..+..++
T Consensus       209 mltG~~Pf~~~~------~~~~~~~~~~~-~~~--------------------------------------~~~~~~~~s  243 (293)
T d1yhwa1         209 MIEGEPPYLNEN------PLRALYLIATN-GTP--------------------------------------ELQNPEKLS  243 (293)
T ss_dssp             HHHSSCTTTTSC------HHHHHHHHHHH-CSC--------------------------------------CCSSGGGSC
T ss_pred             HhhCCCCCCCCC------HHHHHHHHHhC-CCC--------------------------------------CCCCcccCC
Confidence            999999996432      22222222211 000                                      112234567


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      +++++||.+||+.||.+|||++|+|+||||+...
T Consensus       244 ~~~~~li~~~L~~dP~~R~s~~eil~Hp~~~~~~  277 (293)
T d1yhwa1         244 AIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAK  277 (293)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhcCHhhCCCC
Confidence            8999999999999999999999999999998543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-58  Score=462.12  Aligned_cols=291  Identities=22%  Similarity=0.325  Sum_probs=211.7

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      +++++|+++++||+|+||+||+|+++.+|+.||+|+++..  ......+.+|+.+|++|      +|||||+++++|.  
T Consensus         3 l~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~l~~~~~--   74 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC------NSPYIVGFYGAFY--   74 (322)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGC------CCTTBCCEEEEEE--
T ss_pred             CCccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhC------CCCCCCcEEEEEE--
Confidence            4578999999999999999999999999999999998754  23356788999999998      7899999999999  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        +..++||||||| +++|.+++...  ..+++..++.++.||+.||.|||++.|||||||||+||||+.          
T Consensus        75 --~~~~~~iVmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~----------  140 (322)
T d1s9ja_          75 --SDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNS----------  140 (322)
T ss_dssp             --CSSEEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECT----------
T ss_pred             --ECCEEEEEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECC----------
Confidence              457899999999 88999999754  349999999999999999999996328999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (322)
T d1s9ja_         141 --------------------------------------------------------------------------------  140 (322)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                                ++.+||+|||+|.... ....+.+||+.|+|||++.+..|+.++|||||||++|
T Consensus       141 --------------------------~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~  194 (322)
T d1s9ja_         141 --------------------------RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV  194 (322)
T ss_dssp             --------------------------TCCEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHH
T ss_pred             --------------------------CCCEEEeeCCCccccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHH
Confidence                                      4679999999997643 3345679999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCC---Ccccc-cccccCccccchhcccCCchhhhhhh-cc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGG---RYSRD-FFNRHGDLRHIRRLRFWPLNKVLIEK-YD  429 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  429 (530)
                      ||++|+.||.+.+.     ....+..+....|..........   ..... .............     ...+.... ..
T Consensus       195 ell~G~~Pf~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  264 (322)
T d1s9ja_         195 EMAVGRYPIPPPDA-----KELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFEL-----LDYIVNEPPPK  264 (322)
T ss_dssp             HHHHSSCCSSCCCT-----THHHHHC------------------------------CCCCHHHH-----HHHHHTSCCCC
T ss_pred             HHHHCCCCCCCCCH-----HHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHH-----HhhhhccCCcc
Confidence            99999999976432     22233333333332221110000   00000 0000000000000     00000000 01


Q ss_pred             C-ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          430 F-SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       430 ~-~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      . ....+.++.+||.+||++||.+||||+|+|+||||+.
T Consensus       265 ~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~  303 (322)
T d1s9ja_         265 LPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKR  303 (322)
T ss_dssp             CCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHH
T ss_pred             CccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCc
Confidence            1 1235788999999999999999999999999999985

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-57  Score=440.48  Aligned_cols=259  Identities=22%  Similarity=0.381  Sum_probs=209.9

Q ss_pred             CcEeeCCCE-EEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           36 GDTFKNGRY-VVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        36 g~~~~~~~y-~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      |... +++| ++.++||+|+||+||+|+++.+++.||+|++....   ...+.+.+|+++|++|      +|||||++++
T Consensus         3 g~~~-~gry~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~   75 (270)
T d1t4ha_           3 GMSN-DGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL------QHPNIVRFYD   75 (270)
T ss_dssp             EECT-TSCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTC------CCTTBCCEEE
T ss_pred             CcCC-CCCEEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhC------CCCCeeeEEE
Confidence            3444 5666 78889999999999999999999999999876543   2345678999999998      7899999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--ceeccCCCCcEEEeeccC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELS--IIHTDLKPENVLLMSMID  188 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~g--IvHrDIKp~NILl~~~~~  188 (530)
                      +|.........+||||||| +++|.+++...  ..+++..++.|+.||+.||+|||++ |  ||||||||+||||+..  
T Consensus        76 ~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~~--  150 (270)
T d1t4ha_          76 SWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGP--  150 (270)
T ss_dssp             EEEEESSSCEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESST--
T ss_pred             EEeeccccCCEEEEEEeCCCCCcHHHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeCC--
Confidence            9987654567899999999 88999999754  4599999999999999999999997 8  9999999999999531  


Q ss_pred             CCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 045988          189 PSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQN  268 (530)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (270)
T d1t4ha_         151 --------------------------------------------------------------------------------  150 (270)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-cCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          269 GSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-FTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                       ++.+||+|||+|...... ....+||+.|+|||++.+ .|+.++|||
T Consensus       151 ---------------------------------~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIw  196 (270)
T d1t4ha_         151 ---------------------------------TGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVY  196 (270)
T ss_dssp             ---------------------------------TSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHH
T ss_pred             ---------------------------------CCCEEEeecCcceeccCCccCCcccCccccCHHHhCC-CCCCcCchh
Confidence                                             356999999999764433 345689999999999876 599999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhC-CCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          348 SFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLG-MMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       348 SlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      ||||++|+|++|++||....      ....+..  .+.. ..|.                                    
T Consensus       197 SlGvilyel~~g~~Pf~~~~------~~~~~~~--~i~~~~~~~------------------------------------  232 (270)
T d1t4ha_         197 AFGMCMLEMATSEYPYSECQ------NAAQIYR--RVTSGVKPA------------------------------------  232 (270)
T ss_dssp             HHHHHHHHHHHSSCTTTTCS------SHHHHHH--HHTTTCCCG------------------------------------
T ss_pred             hHHHHHHHHHHCCCCCCCcc------cHHHHHH--HHHcCCCCc------------------------------------
Confidence            99999999999999996432      2222111  1111 1111                                    


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                        .++...++++.+||.+||..||++|||++|+|+||||+
T Consensus       233 --~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~Hp~fk  270 (270)
T d1t4ha_         233 --SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQ  270 (270)
T ss_dssp             --GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC
T ss_pred             --ccCccCCHHHHHHHHHHccCCHhHCcCHHHHhCCcccC
Confidence              12233467899999999999999999999999999996

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-57  Score=447.58  Aligned_cols=251  Identities=27%  Similarity=0.400  Sum_probs=210.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|++++.||+|+||+||+|+++.+|+.||||++.+.    ....+.+.+|+++|++|      +|||||+++++|.  
T Consensus         7 p~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~~~~~--   78 (288)
T d1uu3a_           7 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL------DHPFFVKLYFTFQ--   78 (288)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC------CSTTBCCEEEEEE--
T ss_pred             CCCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHc------CCCCeeEEEEEEE--
Confidence            36799999999999999999999999999999998753    23456788999999999      7899999999998  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        +...+||||||| +++|.+++...  +.+++..++.++.||+.||+|||++ |||||||||+|||++.          
T Consensus        79 --~~~~~~ivmEy~~gg~L~~~~~~~--~~l~e~~~~~~~~qi~~al~ylH~~-~iiHrDiKp~NIll~~----------  143 (288)
T d1uu3a_          79 --DDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGK-GIIHRDLKPENILLNE----------  143 (288)
T ss_dssp             --CSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT----------
T ss_pred             --ECCEEEEEEEccCCCCHHHhhhcc--CCCCHHHHHHHHHHHHHHHHhhccc-cEEcCcCCccccccCC----------
Confidence              457899999999 88999988744  4599999999999999999999997 9999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (288)
T d1uu3a_         144 --------------------------------------------------------------------------------  143 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                ++.+||+|||+|+....     .....+||+.|+|||++.+..|+.++||||||
T Consensus       144 --------------------------~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlG  197 (288)
T d1uu3a_         144 --------------------------DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALG  197 (288)
T ss_dssp             --------------------------TSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHH
T ss_pred             --------------------------CceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhh
Confidence                                      56799999999976432     23456899999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+.+      ....+..                                          +....+.+
T Consensus       198 vilyell~g~~Pf~~~~------~~~~~~~------------------------------------------i~~~~~~~  229 (288)
T d1uu3a_         198 CIIYQLVAGLPPFRAGN------EYLIFQK------------------------------------------IIKLEYDF  229 (288)
T ss_dssp             HHHHHHHHSSCSSCCSS------HHHHHHH------------------------------------------HHTTCCCC
T ss_pred             HHHHHHhhCCCCCCCcC------HHHHHHH------------------------------------------HHcCCCCC
Confidence            99999999999996432      1111111                                          12223345


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHH------HhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQ------CLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~e------lL~hp~f~~~  468 (530)
                      +...++++++||.+||+.||.+|||++|      +++||||+.-
T Consensus       230 p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i  273 (288)
T d1uu3a_         230 PEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESV  273 (288)
T ss_dssp             CTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTC
T ss_pred             CccCCHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCC
Confidence            5667889999999999999999999988      5889999764

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1e-56  Score=454.09  Aligned_cols=260  Identities=25%  Similarity=0.381  Sum_probs=214.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|+++++||+|+||+||+|+++.+|+.||||++.... ...+.+.+|+++|++|      .|||||+++++|..    
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~~~----   94 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL------RHPTLVNLHDAFED----   94 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHT------CCTTBCCEEEEEEE----
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhC------CCCCCCcEEEEEEE----
Confidence            368999999999999999999999999999999887643 3356678999999999      78899999999994    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ...+||||||| +++|.+++... ...+++..++.|+.||+.||+|||++ |||||||||+||||....           
T Consensus        95 ~~~~~ivmE~~~gg~L~~~l~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~-~iiHrDiKp~NIll~~~~-----------  161 (350)
T d1koaa2          95 DNEMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHEN-NYVHLDLKPENIMFTTKR-----------  161 (350)
T ss_dssp             TTEEEEEECCCCSCBHHHHHTCT-TSCBCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSTT-----------
T ss_pred             CCEEEEEEEcCCCCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhc-CCeeeeechhHeeeccCC-----------
Confidence            47899999999 89999988533 33599999999999999999999997 999999999999995310           


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (350)
T d1koaa2         162 --------------------------------------------------------------------------------  161 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                             .+.+||+|||+|......  .....||+.|||||++.+..|+.++|||||||++|+|
T Consensus       162 -----------------------~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyel  218 (350)
T d1koaa2         162 -----------------------SNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYIL  218 (350)
T ss_dssp             -----------------------SCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHH
T ss_pred             -----------------------CCeEEEeecchheecccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHH
Confidence                                   356999999999764432  3456899999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|++||.+.+      ..+.+..+.......+.                                      .....+++
T Consensus       219 l~G~~Pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------------~~~~~~s~  254 (350)
T d1koaa2         219 LSGLSPFGGEN------DDETLRNVKSCDWNMDD--------------------------------------SAFSGISE  254 (350)
T ss_dssp             HHSSCSSCCSS------HHHHHHHHHHTCCCSCC--------------------------------------GGGGGCCH
T ss_pred             HhCCCCCCCCC------HHHHHHHHHhCCCCCCc--------------------------------------ccccCCCH
Confidence            99999996543      23333333222111111                                      11134568


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ++++||.+||++||.+|||++|+|+||||+....
T Consensus       255 ~~~~li~~~L~~dP~~R~t~~eil~hp~~~~~~~  288 (350)
T d1koaa2         255 DGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNA  288 (350)
T ss_dssp             HHHHHHHHHCCSSGGGSCCHHHHHHSTTTSCTTC
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhcCcccCCCCC
Confidence            8999999999999999999999999999997654

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-56  Score=441.02  Aligned_cols=254  Identities=28%  Similarity=0.378  Sum_probs=210.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc-ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      +.|+++++||+|+||+||+|+++.+++.||||++... ....+.+.+|+++|++|      +|||||+++++|..    .
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~~~~~~----~   81 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC------DHPNIVKLLDAFYY----E   81 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHC------CCTTBCCEEEEEEE----T
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEee----C
Confidence            5699999999999999999999999999999998754 34457789999999999      78999999999984    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+||||||| +++|.+++... ...+++..++.|+.||+.||+|||++ |||||||||+|||++.              
T Consensus        82 ~~~~lvmEy~~~g~L~~~~~~~-~~~l~e~~~~~i~~qi~~gL~ylH~~-~ivHrDiKp~NIll~~--------------  145 (288)
T d2jfla1          82 NNLWILIEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHDN-KIIHRDLKAGNILFTL--------------  145 (288)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT--------------
T ss_pred             CeEEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CEEEeecChhheeECC--------------
Confidence            7899999999 88999887643 34599999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (288)
T d2jfla1         146 --------------------------------------------------------------------------------  145 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhc-----CCCCCCcchhHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLL-----GSKYSTPADLWSFAC  351 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~-----~~~~~~~~DiWSlG~  351 (530)
                                            ++.+||+|||+|.....   .....+||+.|+|||++.     +..|+.++|||||||
T Consensus       146 ----------------------~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGv  203 (288)
T d2jfla1         146 ----------------------DGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGI  203 (288)
T ss_dssp             ----------------------TSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHH
T ss_pred             ----------------------CCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHH
Confidence                                  46799999999965432   245678999999999984     456899999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCC
Q 045988          352 ICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFS  431 (530)
Q Consensus       352 il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (530)
                      ++|+|++|.+||.+.+      ..+.+..+..  +..|                                     ....+
T Consensus       204 ilyemltg~~Pf~~~~------~~~~~~~i~~--~~~~-------------------------------------~~~~~  238 (288)
T d2jfla1         204 TLIEMAEIEPPHHELN------PMRVLLKIAK--SEPP-------------------------------------TLAQP  238 (288)
T ss_dssp             HHHHHHHSSCTTTTSC------GGGHHHHHHH--SCCC-------------------------------------CCSSG
T ss_pred             HHHHHhhCCCCCCCCC------HHHHHHHHHc--CCCC-------------------------------------CCCcc
Confidence            9999999999997543      2222222211  0000                                     11223


Q ss_pred             hhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          432 EKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       432 ~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ...++++.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       239 ~~~s~~~~~li~~~L~~dp~~R~t~~ell~hp~~~~~  275 (288)
T d2jfla1         239 SRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVD  275 (288)
T ss_dssp             GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGCCC
T ss_pred             ccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCC
Confidence            4567899999999999999999999999999999853

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-56  Score=450.23  Aligned_cols=299  Identities=27%  Similarity=0.419  Sum_probs=237.8

Q ss_pred             CCCccccccCcE---eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCC
Q 045988           27 RGGYHAVRMGDT---FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDP  100 (530)
Q Consensus        27 ~~~~~~~~~g~~---~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~  100 (530)
                      ++|||+..++.+   + .++|+++++||+|+||+||+|+++.+|+.||||++++..   ...+.+.+|+++|+++     
T Consensus         1 ~~~~~~~~~~~~~~~~-~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l-----   74 (346)
T d1cm8a_           1 RSGFYRQEVTKTAWEV-RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-----   74 (346)
T ss_dssp             CCSBCCEECSSSEECC-BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCcEEEeccCceeec-CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhc-----
Confidence            579999999987   5 689999999999999999999999999999999987542   3345678999999999     


Q ss_pred             CCCcceeEecceeeecCC--CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCC
Q 045988          101 DDKKCVVKLLDHFKHSGP--NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKP  178 (530)
Q Consensus       101 ~~h~~Iv~~~~~~~~~~~--~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp  178 (530)
                       +|||||+++++|...+.  ...++|||||||+.+|..+++.   ..+++..++.++.||+.||+|||++ |||||||||
T Consensus        75 -~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~-~IiHrDiKp  149 (346)
T d1cm8a_          75 -RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAA-GIIHRDLKP  149 (346)
T ss_dssp             -CBTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCG
T ss_pred             -CCCCeeEEEEEeccCccccccceEEEEEecccccHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhC-CCcccccCc
Confidence             78889999999986531  2346899999999888888753   4599999999999999999999997 999999999


Q ss_pred             CcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 045988          179 ENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEP  258 (530)
Q Consensus       179 ~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (530)
                      +|||++.                                                                         
T Consensus       150 ~NIL~~~-------------------------------------------------------------------------  156 (346)
T d1cm8a_         150 GNLAVNE-------------------------------------------------------------------------  156 (346)
T ss_dssp             GGEEECT-------------------------------------------------------------------------
T ss_pred             chhhccc-------------------------------------------------------------------------
Confidence            9999955                                                                         


Q ss_pred             CCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCC
Q 045988          259 NGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~  338 (530)
                                                                 +..+||+|||+|.......+..+||+.|+|||++.+.
T Consensus       157 -------------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~  193 (346)
T d1cm8a_         157 -------------------------------------------DCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNW  193 (346)
T ss_dssp             -------------------------------------------TCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTT
T ss_pred             -------------------------------------------ccccccccccceeccCCccccccccccccCHHHHcCC
Confidence                                                       5679999999999888888889999999999999874


Q ss_pred             -CCCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          339 -KYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       339 -~~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                       .++.++|||||||++|+|++|.+||.+.+      ..+.+..+....+.+|..++............       .... 
T Consensus       194 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-  259 (346)
T d1cm8a_         194 MRYTQTVDIWSVGCIMAEMITGKTLFKGSD------HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYM-------KGLP-  259 (346)
T ss_dssp             TCCCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHH-------HHSC-
T ss_pred             CCCCccchhhcchHHHHHHHHCcCCCCCCC------hHHHHHHHHhccCCCcHHHHhhhcchhhhhhh-------ccCC-
Confidence             47899999999999999999999997654      67888899999999988766433221100000       0000 


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                       .....  .........++++.+||.+||++||.+||||.|||+||||+...
T Consensus       260 -~~~~~--~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~  308 (346)
T d1cm8a_         260 -ELEKK--DFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH  308 (346)
T ss_dssp             -CCCCC--CGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             -ccccc--chHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCC
Confidence             00000  00112335678899999999999999999999999999998754

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-56  Score=445.05  Aligned_cols=258  Identities=29%  Similarity=0.412  Sum_probs=197.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .++|++.+.||+|+||+||+|+++.+|+.||||++.+..  .....+.+|+.+|++|      +|||||+++++|.    
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~l~~~~~----   77 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKI------KHPNIVALDDIYE----   77 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTC------CCTTBCCEEEEEE----
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhC------CCCCCCcEEEEEE----
Confidence            467999999999999999999999999999999987543  2345577899999998      7899999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      +...+||||||| +++|.+++..  ...+++..++.|+.||+.||+|||++ |||||||||+|||+....          
T Consensus        78 ~~~~~~lvmE~~~gg~L~~~l~~--~~~l~e~~~~~~~~qi~~al~ylH~~-~iiHrDiKp~Nil~~~~~----------  144 (307)
T d1a06a_          78 SGGHLYLIMQLVSGGELFDRIVE--KGFYTERDASRLIFQVLDAVKYLHDL-GIVHRDLKPENLLYYSLD----------  144 (307)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHT--CSCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESSSS----------
T ss_pred             ECCEEEEEEeccCCCcHHHhhhc--ccCCCHHHHHHHHHHHHHHHHhhhhc-eeeeEEecccceeecccC----------
Confidence            557899999999 8999999974  34599999999999999999999997 999999999999995411          


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (307)
T d1a06a_         145 --------------------------------------------------------------------------------  144 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                             .++.+||+|||+|....  ......+||+.|+|||++.+..|+.++|||||||++|+
T Consensus       145 -----------------------~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilye  201 (307)
T d1a06a_         145 -----------------------EDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYI  201 (307)
T ss_dssp             -----------------------TTCCEEECCC------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHH
T ss_pred             -----------------------CCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHH
Confidence                                   04579999999997643  22456789999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||.+..      .......+..   ....                                   .........+
T Consensus       202 ll~g~~Pf~~~~------~~~~~~~i~~---~~~~-----------------------------------~~~~~~~~~s  237 (307)
T d1a06a_         202 LLCGYPPFYDEN------DAKLFEQILK---AEYE-----------------------------------FDSPYWDDIS  237 (307)
T ss_dssp             HHHSSCSCCCSS------HHHHHHHHHT---TCCC-----------------------------------CCTTTTTTSC
T ss_pred             HHhCCCCCCCCC------HHHHHHHHhc---cCCC-----------------------------------CCCccccCCC
Confidence            999999996432      1222222111   0000                                   0011234567


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +++.+||.+||+.||.+|||++|+|+||||+..
T Consensus       238 ~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  270 (307)
T d1a06a_         238 DSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGD  270 (307)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHHSTTTTSS
T ss_pred             HHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence            899999999999999999999999999999853

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-56  Score=450.33  Aligned_cols=251  Identities=23%  Similarity=0.374  Sum_probs=215.3

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|++++.||+|+||+||+|+++.+|+.||||++++.    ......+.+|+.+|+++      +|||||+++++|.  
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l------~hp~Iv~l~~~~~--   75 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT------RHPFLTALKYAFQ--   75 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CCTTBCCEEEEEE--
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhC------CCCCEEEEEeeec--
Confidence            46899999999999999999999999999999998754    23456788999999998      7899999999999  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        +...+||||||| +++|..++...  +.+++..++.++.||+.||+|||++ |||||||||+|||++.          
T Consensus        76 --~~~~~~iv~ey~~gg~L~~~~~~~--~~~~e~~~~~~~~qil~al~ylH~~-~iiHRDlKP~NILl~~----------  140 (337)
T d1o6la_          76 --THDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSR-DVVYRDIKLENLMLDK----------  140 (337)
T ss_dssp             --CSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEECT----------
T ss_pred             --cccccccceeccCCCchhhhhhcc--cCCcHHHHHHHHHHHhhhhhhhhhc-CccccccCHHHeEecC----------
Confidence              558999999999 89999998753  4599999999999999999999997 9999999999999965          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (337)
T d1o6la_         141 --------------------------------------------------------------------------------  140 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI  352 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~i  352 (530)
                                                ++.+||+|||+|+...   ......+||+.|+|||++.+..|+.++|||||||+
T Consensus       141 --------------------------~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvi  194 (337)
T d1o6la_         141 --------------------------DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVV  194 (337)
T ss_dssp             --------------------------TSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHH
T ss_pred             --------------------------CCCEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhH
Confidence                                      5679999999997543   23456789999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          353 CFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       353 l~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      +|+|++|.+||.+.+       ...+.                                         ..+....+.++.
T Consensus       195 lyeml~G~~pf~~~~-------~~~~~-----------------------------------------~~i~~~~~~~p~  226 (337)
T d1o6la_         195 MYEMMCGRLPFYNQD-------HERLF-----------------------------------------ELILMEEIRFPR  226 (337)
T ss_dssp             HHHHHHSSCSSCCSS-------HHHHH-----------------------------------------HHHHHCCCCCCT
T ss_pred             HHHHHHCCCCCCCcC-------HHHHH-----------------------------------------HHHhcCCCCCCc
Confidence            999999999996543       11111                                         122223345566


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      ..++++++||.+||++||.+|++     +.|+++||||+.-
T Consensus       227 ~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~i  267 (337)
T d1o6la_         227 TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI  267 (337)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             cCCHHHHHHHHhhccCCchhhcccccccHHHHHcCcccccC
Confidence            77899999999999999999994     9999999999763

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-56  Score=442.58  Aligned_cols=283  Identities=30%  Similarity=0.434  Sum_probs=220.8

Q ss_pred             EEEEeccccceEEEEEEeCCCCeEEEEEEeccccc------chHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           46 VQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        46 i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .+++||+|+||+||+|+++.+|+.||||+++....      ....+.+|+.+|+++      +|||||+++++|.    .
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l------~hpnIv~~~~~~~----~   71 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL------SHPNIIGLLDAFG----H   71 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHC------CCTTBCCEEEEEC----C
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhC------CCCCEeEEEeeec----c
Confidence            47899999999999999999999999999875422      234678999999999      7889999999998    4


Q ss_pred             CcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       120 ~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..++|||||||.+++...+.. ....+++..++.|++||+.||+|||++ |||||||||+|||++.              
T Consensus        72 ~~~~~ivmE~~~~~~~~~~~~-~~~~l~~~~~~~~~~qil~aL~~lH~~-~iiHrDiKp~NIli~~--------------  135 (299)
T d1ua2a_          72 KSNISLVFDFMETDLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQH-WILHRDLKPNNLLLDE--------------  135 (299)
T ss_dssp             TTCCEEEEECCSEEHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT--------------
T ss_pred             CCceeehhhhhcchHHhhhhh-cccCCCHHHHHHHHHHHHHHHHHhhcc-ceecccCCcceEEecC--------------
Confidence            578999999996555554432 334599999999999999999999997 9999999999999955              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (299)
T d1ua2a_         136 --------------------------------------------------------------------------------  135 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~e  355 (530)
                                            ++.+||+|||+|.....   .....+||+.|+|||++.+. .|+.++|||||||++|+
T Consensus       136 ----------------------~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~e  193 (299)
T d1ua2a_         136 ----------------------NGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAE  193 (299)
T ss_dssp             ----------------------TCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHH
T ss_pred             ----------------------CCccccccCccccccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHH
Confidence                                  56799999999976433   23456899999999998754 58999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||.+.+      ..+++..|.+.+|.++...+.......... ......      ..++.       ......+
T Consensus       194 l~~g~~pf~~~~------~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~-------~~~~~~s  253 (299)
T d1ua2a_         194 LLLRVPFLPGDS------DLDQLTRIFETLGTPTEEQWPDMCSLPDYV-TFKSFP------GIPLH-------HIFSAAG  253 (299)
T ss_dssp             HHHSSCSSCCSS------HHHHHHHHHHHHCCCCTTTSSSTTSSTTCC-CCCCCC------CCCHH-------HHCTTCC
T ss_pred             HHhCcCCCCCCC------HHHHHHHHHHhcCCCChhhccchhccchhh-hhccCC------CCChH-------HhcccCC
Confidence            999999997654      678899999999988776553322111110 000000      00000       1123456


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCCCCCCc
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRLLEPSM  476 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~~~  476 (530)
                      +++.+||.+||++||++||||+|+|+||||+..|.+.+++.
T Consensus       254 ~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~p~p~~~~~  294 (299)
T d1ua2a_         254 DDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPTPGCQ  294 (299)
T ss_dssp             HHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCCCCSSS
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhCCHhhCCCCCCCCCCC
Confidence            88999999999999999999999999999998876554443

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-56  Score=437.78  Aligned_cols=259  Identities=27%  Similarity=0.404  Sum_probs=212.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-------cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-------HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-------~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .++|+++++||+|+||+||+|+++.+|+.||||++++..       ...+.+.+|+.+|++|      +|||||+++++|
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~   82 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI------QHPNVITLHEVY   82 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHC------CCTTBCCEEEEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhC------CCCCCCcEEEEE
Confidence            468999999999999999999999999999999986532       2346788999999999      789999999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      .    +...+||||||| +++|.+++...  ..+++..++.++.||+.||+|||++ |||||||||+|||++.....   
T Consensus        83 ~----~~~~~~iv~E~~~gg~L~~~i~~~--~~l~~~~~~~~~~qi~~al~yLH~~-~ivHrDiKp~Nill~~~~~~---  152 (293)
T d1jksa_          83 E----NKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSL-QIAHFDLKPENIMLLDRNVP---  152 (293)
T ss_dssp             E----CSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESCSSSS---
T ss_pred             E----ECCEEEEEEEcCCCccccchhccc--cccchhHHHHHHHHHHHHHHhhhhc-ceeecccccceEEEecCCCc---
Confidence            8    557999999999 89999999754  3599999999999999999999997 99999999999999552100   


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (293)
T d1jksa_         153 --------------------------------------------------------------------------------  152 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                                   ...+||+|||+|....  .......||+.|+|||++.+..|+.++||||||
T Consensus       153 -----------------------------~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlG  203 (293)
T d1jksa_         153 -----------------------------KPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIG  203 (293)
T ss_dssp             -----------------------------SCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHH
T ss_pred             -----------------------------ccceEecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhh
Confidence                                         2469999999997643  335567899999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|+|++|.+||.+.+      ..+.+..+...-...+.                                      ..
T Consensus       204 vilyell~g~~Pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------------~~  239 (293)
T d1jksa_         204 VITYILLSGASPFLGDT------KQETLANVSAVNYEFED--------------------------------------EY  239 (293)
T ss_dssp             HHHHHHHHSSCSSCCSS------HHHHHHHHHTTCCCCCH--------------------------------------HH
T ss_pred             HHHHHHHcCCCCCCCCC------HHHHHHHHHhcCCCCCc--------------------------------------hh
Confidence            99999999999996543      22222222211111111                                      01


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +...++++.+||.+||+.||.+|||++|+|+||||+..
T Consensus       240 ~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  277 (293)
T d1jksa_         240 FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPK  277 (293)
T ss_dssp             HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTCC-
T ss_pred             cCCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCC
Confidence            12456789999999999999999999999999999854

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-56  Score=445.93  Aligned_cols=250  Identities=26%  Similarity=0.428  Sum_probs=215.4

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|+++++||+|+||+||+|+++.+|+.||||++++.    ....+.+.+|+.+|+++      +|||||+++++|.   
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~~---   74 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV------THPFIIRMWGTFQ---   74 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CBTTBCCEEEEEE---
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhc------cCcChhheeeeEe---
Confidence            5799999999999999999999999999999998753    23456788999999998      7899999999999   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       +...+|+||||| +++|..++...  ..+++..++.++.||+.||+|||++ |||||||||+||||+.           
T Consensus        75 -~~~~~~ivmE~~~gg~l~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~iiHrDiKp~NILl~~-----------  139 (316)
T d1fota_          75 -DAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSK-DIIYRDLKPENILLDK-----------  139 (316)
T ss_dssp             -CSSEEEEEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECT-----------
T ss_pred             -eCCeeeeEeeecCCcccccccccc--ccccccHHHHHHHHHHHhhhhhccC-cEEccccCchheeEcC-----------
Confidence             557999999999 88888888643  3489999999999999999999997 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (316)
T d1fota_         140 --------------------------------------------------------------------------------  139 (316)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                               ++.+||+|||+|..........+||+.|+|||++.+..|+.++|||||||++|+|
T Consensus       140 -------------------------~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyem  194 (316)
T d1fota_         140 -------------------------NGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEM  194 (316)
T ss_dssp             -------------------------TSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHH
T ss_pred             -------------------------CCCEEEecCccceEeccccccccCcccccCHHHHcCCCCCchhhccccchhHHHH
Confidence                                     5679999999998877777788999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|++||.+.+      ....+..                                          +......++...++
T Consensus       195 ltG~~Pf~~~~------~~~~~~~------------------------------------------i~~~~~~~p~~~s~  226 (316)
T d1fota_         195 LAGYTPFYDSN------TMKTYEK------------------------------------------ILNAELRFPPFFNE  226 (316)
T ss_dssp             HHSSCTTCCSS------HHHHHHH------------------------------------------HHHCCCCCCTTSCH
T ss_pred             HhCCCCCCCcC------HHHHHHH------------------------------------------HHcCCCCCCCCCCH
Confidence            99999996432      1111111                                          22223344556778


Q ss_pred             HHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      ++.+||.+||..||.+|+     |++++|+||||+.-
T Consensus       227 ~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i  263 (316)
T d1fota_         227 DVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEV  263 (316)
T ss_dssp             HHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSC
T ss_pred             HHHHHHHHHhhhCHHhccccchhhHHHHHcCcccccC
Confidence            999999999999999996     99999999999864

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-56  Score=438.07  Aligned_cols=253  Identities=22%  Similarity=0.380  Sum_probs=198.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .++|++++.||+|+||+||+|+++.+|+.||||++....   ...+.+.+|+++|+++      +|||||++++++.+. 
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~~~~-   75 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL------KHPNIVRYYDRIIDR-   75 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSC------CCTTBCCEEEEEEC--
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHC------CCCCEeeEEEEEEeC-
Confidence            368999999999999999999999999999999987543   2345678899999888      789999999998753 


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCC-----ceeccCCCCcEEEeeccCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELS-----IIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~g-----IvHrDIKp~NILl~~~~~~  189 (530)
                       ....+||||||| +++|.+++...  ....+++..++.++.||+.||+|||++ |     ||||||||+||||+.    
T Consensus        76 -~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~-~~~~~~IiHrDiKp~NIll~~----  149 (269)
T d2java1          76 -TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR-SDGGHTVLHRDLKPANVFLDG----  149 (269)
T ss_dssp             ----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHH-CC---------CCGGGEEECT----
T ss_pred             -CCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCCCCEEeCcCchhhcCcCC----
Confidence             346789999999 89999998653  234599999999999999999999986 6     999999999999965    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (269)
T d2java1         150 --------------------------------------------------------------------------------  149 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                      ++.+||+|||+|.....   .....+||+.|+|||++.+..|+.++||
T Consensus       150 --------------------------------~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DI  197 (269)
T d2java1         150 --------------------------------KQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDI  197 (269)
T ss_dssp             --------------------------------TSCEEECCHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHH
T ss_pred             --------------------------------CCcEEEeeccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHH
Confidence                                            56799999999976432   2345789999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|.+||.+.+      ..+....+..  +..                                      
T Consensus       198 wSlGvilyel~tg~~Pf~~~~------~~~~~~~i~~--~~~--------------------------------------  231 (269)
T d2java1         198 WSLGCLLYELCALMPPFTAFS------QKELAGKIRE--GKF--------------------------------------  231 (269)
T ss_dssp             HHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHH--TCC--------------------------------------
T ss_pred             HhhCHHHHHHhhCCCCCCCCC------HHHHHHHHHc--CCC--------------------------------------
Confidence            999999999999999996433      1121211111  000                                      


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWI  465 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f  465 (530)
                       ...+...++++.+||.+||+.||.+|||++|+|+|||+
T Consensus       232 -~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         232 -RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             -CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             -CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHhCCcC
Confidence             12334567889999999999999999999999999996

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=2.4e-56  Score=451.71  Aligned_cols=259  Identities=23%  Similarity=0.350  Sum_probs=213.6

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc-cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ-HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~-~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|+++++||+|+||+||+|+++.+|+.||||+++... .....+.+|+.+|++|      +|||||+++++|.    +
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l------~HpnIv~~~~~~~----~   97 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQL------HHPKLINLHDAFE----D   97 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTC------CSTTBCCEEEEEE----C
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhC------CCCCCCcEEEEEE----E
Confidence            368999999999999999999999999999999987653 3345678899999998      7899999999999    5


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ...+||||||| +++|.+++... ...+++.+++.|+.||+.||+|||++ |||||||||+||||+...           
T Consensus        98 ~~~~~ivmE~~~gg~L~~~~~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~-~iiHRDiKp~NILl~~~~-----------  164 (352)
T d1koba_          98 KYEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEH-SIVHLDIKPENIMCETKK-----------  164 (352)
T ss_dssp             SSEEEEEEECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSTT-----------
T ss_pred             CCEEEEEEEcCCCChHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CeeecccccccccccccC-----------
Confidence            57999999999 89998877532 33599999999999999999999997 999999999999995310           


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (352)
T d1koba_         165 --------------------------------------------------------------------------------  164 (352)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                             .+.+||+|||+|......  .....||+.|+|||++.+..|+.++|||||||++|+|
T Consensus       165 -----------------------~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyel  221 (352)
T d1koba_         165 -----------------------ASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVL  221 (352)
T ss_dssp             -----------------------CCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred             -----------------------CCeEEEeecccceecCCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHH
Confidence                                   457999999999765432  3446799999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHH
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAN  436 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (530)
                      ++|.+||.+.+      ....+..+.......|.                                      ......++
T Consensus       222 ltG~~Pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------------~~~~~~s~  257 (352)
T d1koba_         222 LSGLSPFAGED------DLETLQNVKRCDWEFDE--------------------------------------DAFSSVSP  257 (352)
T ss_dssp             HHSCCSSCCSS------HHHHHHHHHHCCCCCCS--------------------------------------STTTTSCH
T ss_pred             HhCCCCCCCCC------HHHHHHHHHhCCCCCCc--------------------------------------ccccCCCH
Confidence            99999996543      23333333221111111                                      12235678


Q ss_pred             HHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          437 DMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       437 ~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      ++.+||.+||++||.+|||+.|+|+||||+...
T Consensus       258 ~~~~li~~~L~~dp~~R~s~~eil~Hp~~~~~~  290 (352)
T d1koba_         258 EAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDH  290 (352)
T ss_dssp             HHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhcCHhhCCCc
Confidence            999999999999999999999999999998643

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-55  Score=438.14  Aligned_cols=284  Identities=31%  Similarity=0.502  Sum_probs=226.4

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|+++++||+|+||+||+|.++.+|+.||||+++...   .....+.+|+++|+++      +|||||+++++|..   
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l------~Hp~Iv~~~~~~~~---   72 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL------NHPNIVKLLDVIHT---   72 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTC------CCTTBCCEEEEEEE---
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhC------CCCcEEEecccccc---
Confidence            58999999999999999999999999999999986543   2356788999999998      78999999999994   


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                       ...+|||||||++++..++......++++..++.++.||+.||+|||++ |||||||||+|||++.             
T Consensus        73 -~~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~-~IiHrDiKpeNIl~~~-------------  137 (298)
T d1gz8a_          73 -ENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH-RVLHRDLKPQNLLINT-------------  137 (298)
T ss_dssp             -TTEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT-------------
T ss_pred             -ccceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcC-CEEccccCchheeecc-------------
Confidence             4789999999988888887766667799999999999999999999997 9999999999999954             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (298)
T d1gz8a_         138 --------------------------------------------------------------------------------  137 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc---ccCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK---QFTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~---~~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il~  354 (530)
                                             +..+||+|||.|.....   .....+||+.|+|||++.... ++.++|||||||++|
T Consensus       138 -----------------------~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily  194 (298)
T d1gz8a_         138 -----------------------EGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFA  194 (298)
T ss_dssp             -----------------------TSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred             -----------------------cCcceeccCCcceeccCCcccceeecccceeeehhhhccccCCCccccccccchhhh
Confidence                                   45789999999976432   345568999999999988766 478999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|++||.+.+      ..+.+..+....|.+.+..+........+......         ... ...   .......
T Consensus       195 ~m~~G~~Pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~---~~~~~~~  255 (298)
T d1gz8a_         195 EMVTRRALFPGDS------EIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPK---------WAR-QDF---SKVVPPL  255 (298)
T ss_dssp             HHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCC---------CCC-CCH---HHHSTTC
T ss_pred             HHhhCCCCCCCCC------HHHHHHHHHHhcCCCchhhcccccccccccccccc---------ccc-cch---hhhccCC
Confidence            9999999997544      56788888888887765544322111111000000         000 000   0112245


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPRL  471 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~~  471 (530)
                      +.++.+||.+||++||.+|||++|+|+||||+.-+.+
T Consensus       256 s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~~p  292 (298)
T d1gz8a_         256 DEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKP  292 (298)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCCC
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhCCHhhccCCCC
Confidence            6789999999999999999999999999999876554

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-55  Score=436.68  Aligned_cols=286  Identities=30%  Similarity=0.468  Sum_probs=229.4

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCC-CeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQT-SHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~-~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      +++|+++++||+|+||+||+|++..+ ++.||||+++...   .....+.+|+.+|+.|...   +|||||+++++|...
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~---~HpnIv~~~~~~~~~   82 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF---EHPNVVRLFDVCTVS   82 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHT---CCTTBCCEEEEEEEE
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhc---CCCCcceeeeeeccc
Confidence            57999999999999999999999765 7889999886532   2344677899999888643   699999999998753


Q ss_pred             C-CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 G-PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~-~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                      . ....+++++||||.+++..+........+++..++.++.||+.||+|||++ |||||||||+|||++.          
T Consensus        83 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-~ivHrDiKp~NILi~~----------  151 (305)
T d1blxa_          83 RTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILVTS----------  151 (305)
T ss_dssp             ECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT----------
T ss_pred             ccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CEEecCCCccEEEEcC----------
Confidence            2 234689999999977766666656667799999999999999999999997 9999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (305)
T d1blxa_         152 --------------------------------------------------------------------------------  151 (305)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                                .+.+||+|||++....  ......+||+.|+|||++.+.+|+.++|||||||++
T Consensus       152 --------------------------~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il  205 (305)
T d1blxa_         152 --------------------------SGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIF  205 (305)
T ss_dssp             --------------------------TCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred             --------------------------CCCeeecchhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHH
Confidence                                      4679999999986543  335677899999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccc-cccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRD-FFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |||++|.+||.+.+      ..+.+..+...+|.++...+........ .+....                ......+..
T Consensus       206 ~ell~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~  263 (305)
T d1blxa_         206 AEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKS----------------AQPIEKFVT  263 (305)
T ss_dssp             HHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCC----------------CCCGGGTCC
T ss_pred             HHHHHCCCCCCCCC------HHHHHHHHHHhhCCCchhcccccccchhhhhcccc----------------ccchhhccc
Confidence            99999999997654      6788899999999877655432221111 100000                000112344


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ..++.+.+||.+||++||.+||||+|+|+||||+.-
T Consensus       264 ~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i  299 (305)
T d1blxa_         264 DIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDL  299 (305)
T ss_dssp             SCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTC
T ss_pred             cCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCc
Confidence            567889999999999999999999999999999854

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-55  Score=448.36  Aligned_cols=308  Identities=27%  Similarity=0.425  Sum_probs=229.3

Q ss_pred             CccccccCcE-e-eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCC
Q 045988           29 GYHAVRMGDT-F-KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDK  103 (530)
Q Consensus        29 ~~~~~~~g~~-~-~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h  103 (530)
                      .||||.+|+. + ..++|+++++||+|+||+||+|+++.+|+.||||++....   .....+.+|+.+|+++      +|
T Consensus         2 ~~~~~~~~~~~f~i~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l------~h   75 (355)
T d2b1pa1           2 QFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV------NH   75 (355)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHC------CC
T ss_pred             CCEEEEeCCcceeecCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhc------CC
Confidence            5899999994 3 1378999999999999999999999999999999987543   2345678999999998      78


Q ss_pred             cceeEecceeeecCC--CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcE
Q 045988          104 KCVVKLLDHFKHSGP--NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENV  181 (530)
Q Consensus       104 ~~Iv~~~~~~~~~~~--~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NI  181 (530)
                      ||||+++++|...+.  ...++|+|||||.+++...+.    ..+++..++.++.||+.||+|||++ ||+||||||+||
T Consensus        76 pnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~----~~~~~~~i~~~~~qil~gl~~LH~~-giiHrDlKP~Ni  150 (355)
T d2b1pa1          76 KNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNI  150 (355)
T ss_dssp             TTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGE
T ss_pred             CCeeEEEEEEecccccccCceeEEEEeccchHHHHhhh----cCCCHHHHHHHHHHHHHHHHHhhhc-ccccccCCcccc
Confidence            899999999976542  457999999999888877663    3489999999999999999999997 999999999999


Q ss_pred             EEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 045988          182 LLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGD  261 (530)
Q Consensus       182 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (530)
                      |+..                                                                            
T Consensus       151 l~~~----------------------------------------------------------------------------  154 (355)
T d2b1pa1         151 VVKS----------------------------------------------------------------------------  154 (355)
T ss_dssp             EECT----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            9954                                                                            


Q ss_pred             CcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCC
Q 045988          262 SVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                              +..++++|||.+.....  ..+..+||+.|+|||++.+..
T Consensus       155 ----------------------------------------~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~  194 (355)
T d2b1pa1         155 ----------------------------------------DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  194 (355)
T ss_dssp             ----------------------------------------TCCEEECCCCC---------------CCTTCCHHHHTTCC
T ss_pred             ----------------------------------------ccceeeechhhhhccccccccccccccccccChhhhcCCC
Confidence                                                    45689999999865432  345667999999999999999


Q ss_pred             CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccc-ccccccCccccchhcccC
Q 045988          340 YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSR-DFFNRHGDLRHIRRLRFW  418 (530)
Q Consensus       340 ~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  418 (530)
                      |+.++||||+||++|+|++|.+||.+.+      ....+..+...++.++.+.+....... .++...............
T Consensus       195 ~~~~~DiwSlG~~l~ell~g~~pF~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (355)
T d2b1pa1         195 YKENVDIWSVGCIMGEMVRHKILFPGRD------YIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLF  268 (355)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHS
T ss_pred             CCCCcccccccchHHHHhhCCCCCCCCC------HHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCcccccccccccc
Confidence            9999999999999999999999997654      677788888888887776664433211 111111100000000000


Q ss_pred             CchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          419 PLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                       ...............++++.+||++||++||++||||+|||+||||+....
T Consensus       269 -~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~~  319 (355)
T d2b1pa1         269 -PDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYD  319 (355)
T ss_dssp             -CGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGCC
T ss_pred             -ccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCCC
Confidence             000000001112345788999999999999999999999999999997543

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-56  Score=449.04  Aligned_cols=251  Identities=24%  Similarity=0.349  Sum_probs=215.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|+++++||+|+||+||+|+++.+|+.||||++.+.    ....+.+.+|+++|+.+      +|||||+++++|.  
T Consensus        40 ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~~~~~~~--  111 (350)
T d1rdqe_          40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV------NFPFLVKLEFSFK--  111 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC------CCTTBCCEEEEEE--
T ss_pred             ccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHc------CCCcEeecccccc--
Confidence            36899999999999999999999999999999998753    23456788999999998      7899999999998  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        ....+++||||+ +++|..++...  ..+++..++.|+.||+.||.|||++ |||||||||+||||+.          
T Consensus       112 --~~~~~~~v~e~~~~g~l~~~l~~~--~~l~e~~~~~i~~qi~~aL~yLH~~-~iiHRDIKP~NILl~~----------  176 (350)
T d1rdqe_         112 --DNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSL-DLIYRDLKPENLLIDQ----------  176 (350)
T ss_dssp             --CSSEEEEEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT----------
T ss_pred             --cccccccccccccccchhhhHhhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecCcCCHHHcccCC----------
Confidence              457899999999 89999988754  3599999999999999999999997 9999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (350)
T d1rdqe_         177 --------------------------------------------------------------------------------  176 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                                ++.+||+|||+|+.........+||+.|||||++.+..|+.++|||||||++|+
T Consensus       177 --------------------------~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilye  230 (350)
T d1rdqe_         177 --------------------------QGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYE  230 (350)
T ss_dssp             --------------------------TSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             --------------------------CCCEEeeeceeeeecccccccccCccccCCHHHHcCCCCCccccccchhHHHHH
Confidence                                      467999999999887777777899999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      |++|.+||.+.+      ....+..+                                          ....+.++...+
T Consensus       231 mltG~~Pf~~~~------~~~~~~~i------------------------------------------~~~~~~~p~~~s  262 (350)
T d1rdqe_         231 MAAGYPPFFADQ------PIQIYEKI------------------------------------------VSGKVRFPSHFS  262 (350)
T ss_dssp             HHHSSCSSCCSS------HHHHHHHH------------------------------------------HHCCCCCCTTCC
T ss_pred             HHhCCCCCCCcC------HHHHHHHH------------------------------------------hcCCCCCCccCC
Confidence            999999996432      12222211                                          222233455678


Q ss_pred             HHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          436 NDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      +++.+||++||+.||.+|+     |++|||+||||+.-
T Consensus       263 ~~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~  300 (350)
T d1rdqe_         263 SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT  300 (350)
T ss_dssp             HHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTC
T ss_pred             HHHHHHHHHHhhhCHHhccccccccHHHHHcCccccCC
Confidence            8999999999999999995     99999999999864

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-55  Score=441.37  Aligned_cols=258  Identities=22%  Similarity=0.357  Sum_probs=214.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++++.||+|+||+||+|+++.+++.||||+++........+.+|+++|+++      +|||||+++++|.+    .
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l------~HpnIv~~~~~~~~----~   73 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA------RHRNILHLHESFES----M   73 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHS------CCTTBCCEEEEEEE----T
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhC------CCCCCCeEEEEEEE----C
Confidence            4789999999999999999999999999999999988766667788999999999      78899999999994    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      .++||||||| +++|.+++.... ..+++.+++.|+.||+.||+|||++ ||+||||||+|||++...            
T Consensus        74 ~~~~lvmE~~~gg~L~~~i~~~~-~~l~e~~~~~i~~qi~~al~yLH~~-~iiHrDlKp~NIll~~~~------------  139 (321)
T d1tkia_          74 EELVMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSH-NIGHFDIRPENIIYQTRR------------  139 (321)
T ss_dssp             TEEEEEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSSS------------
T ss_pred             CEEEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHc-CCCcccccccceeecCCC------------
Confidence            7899999999 889999986432 3499999999999999999999997 999999999999995410            


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (321)
T d1tkia_         140 --------------------------------------------------------------------------------  139 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELA  357 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ell  357 (530)
                                            ...+||+|||++.....  .....+||+.|+|||++.+..|+.++|||||||++|+|+
T Consensus       140 ----------------------~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll  197 (321)
T d1tkia_         140 ----------------------SSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLL  197 (321)
T ss_dssp             ----------------------CCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHH
T ss_pred             ----------------------ceEEEEcccchhhccccCCcccccccccccccchhccCCCCCchhhcccHHHHHHHHH
Confidence                                  34699999999976432  234457899999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcHHH
Q 045988          358 TGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDAND  437 (530)
Q Consensus       358 tG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (530)
                      +|.+||.+.+      ..+.+..+.+..-..+...                                      ...++++
T Consensus       198 ~G~~Pf~~~~------~~~~~~~i~~~~~~~~~~~--------------------------------------~~~~s~~  233 (321)
T d1tkia_         198 SGINPFLAET------NQQIIENIMNAEYTFDEEA--------------------------------------FKEISIE  233 (321)
T ss_dssp             HSSCTTCCSS------HHHHHHHHHHTCCCCCHHH--------------------------------------HTTSCHH
T ss_pred             hCCCCCCCCC------HHHHHHHHHhCCCCCChhh--------------------------------------ccCCCHH
Confidence            9999996543      2333333332211111111                                      1235678


Q ss_pred             HHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          438 MADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       438 ~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      +++||.+||+.||.+|||++|+|+||||+..
T Consensus       234 ~~~li~~~L~~dp~~R~s~~eil~hp~~~~~  264 (321)
T d1tkia_         234 AMDFVDRLLVKERKSRMTASEALQHPWLKQK  264 (321)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred             HHHHHHHHccCChhHCcCHHHHhcCHhhccC
Confidence            9999999999999999999999999999864

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-55  Score=443.56  Aligned_cols=263  Identities=27%  Similarity=0.367  Sum_probs=211.9

Q ss_pred             CCCEEEEE-EeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           41 NGRYVVQS-KLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        41 ~~~y~i~~-~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      .++|.+++ .||+|+||+||+|+++.+++.||||+++.    .....+|+.++.++.     +|||||+++++|.+....
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~----~~~~~~E~~~~~~~~-----~hpnIv~l~~~~~~~~~~   80 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRAS-----QCPHIVRIVDVYENLYAG   80 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHT-----TSTTBCCEEEEEEEEETT
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC----cHHHHHHHHHHHHhc-----CCCCCCeEEEEEeecccC
Confidence            36899876 59999999999999999999999999875    346778999987764     799999999999865445


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      ..++||||||| +|+|.+++.......+++.+++.|+.||+.||+|||++ ||+||||||+|||++....          
T Consensus        81 ~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~-~iiHRDiKp~NIll~~~~~----------  149 (335)
T d2ozaa1          81 RKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSKRP----------  149 (335)
T ss_dssp             EEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESCSST----------
T ss_pred             CCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCccccccccccccccccc----------
Confidence            67899999999 88999999865555699999999999999999999997 9999999999999954210          


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (335)
T d2ozaa1         150 --------------------------------------------------------------------------------  149 (335)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                             ...+||+|||+|+...  ......+||+.|+|||++.+..|+.++|||||||++|+|
T Consensus       150 -----------------------~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~l  206 (335)
T d2ozaa1         150 -----------------------NAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYIL  206 (335)
T ss_dssp             -----------------------TCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHH
T ss_pred             -----------------------cccccccccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHH
Confidence                                   3569999999997543  334567899999999999998999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC----Ch
Q 045988          357 ATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF----SE  432 (530)
Q Consensus       357 ltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  432 (530)
                      ++|.+||.+.+...      ....+...                                      +....+.+    ..
T Consensus       207 ltg~~Pf~~~~~~~------~~~~~~~~--------------------------------------i~~~~~~~~~~~~~  242 (335)
T d2ozaa1         207 LCGYPPFYSNHGLA------ISPGMKTR--------------------------------------IRMGQYEFPNPEWS  242 (335)
T ss_dssp             TTSSCSCEETTCC--------------C--------------------------------------CCSCSSSCCTTHHH
T ss_pred             hhCCCCCCCCCHHH------HHHHHHHH--------------------------------------HhcCCCCCCCcccc
Confidence            99999997544211      11111000                                      00000111    12


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                      ..++++.+||.+||++||.+|||+.|+|+||||.....
T Consensus       243 ~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~~  280 (335)
T d2ozaa1         243 EVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTK  280 (335)
T ss_dssp             HSCHHHHHHHHHHSCSSTTTSCCHHHHHHSHHHHTTTS
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHHcCHHhhCCCC
Confidence            45788999999999999999999999999999976543

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.1e-55  Score=435.88  Aligned_cols=251  Identities=24%  Similarity=0.343  Sum_probs=204.5

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+|+++++||+|+||+||+|+++.+|+.||||++....    ...+.+.+|+.+|++|      +|||||+++++|..  
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~~~~~~~~--   86 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL------RHPNTIQYRGCYLR--   86 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEEE--
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHC------CCCCEeeEEEEEEE--
Confidence            36999999999999999999999999999999987543    2235678999999998      78999999999984  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                        ...+||||||| +++|..++.  ....+++..++.|+.||+.||.|||++ |||||||||+||||+.           
T Consensus        87 --~~~~~iv~E~~~~g~l~~~~~--~~~~l~e~~~~~i~~qi~~aL~yLH~~-~iiHrDiKp~NILl~~-----------  150 (309)
T d1u5ra_          87 --EHTAWLVMEYCLGSASDLLEV--HKKPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILLSE-----------  150 (309)
T ss_dssp             --TTEEEEEEECCSEEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGEEEET-----------
T ss_pred             --CCEEEEEEEecCCCchHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeccCCCcceEEECC-----------
Confidence              47899999999 555554443  234599999999999999999999997 9999999999999965           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (309)
T d1u5ra_         151 --------------------------------------------------------------------------------  150 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcC---CCCCCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLG---SKYSTPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~---~~~~~~~DiWSlG~il  353 (530)
                                               ++.+||+|||+|..... ....+||+.|+|||++.+   ..|+.++|||||||++
T Consensus       151 -------------------------~~~~Kl~DFG~a~~~~~-~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvil  204 (309)
T d1u5ra_         151 -------------------------PGLVKLGDFGSASIMAP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITC  204 (309)
T ss_dssp             -------------------------TTEEEECCCTTCBSSSS-BCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHH
T ss_pred             -------------------------CCCEEEeecccccccCC-CCccccCccccCHHHHhccCCCCcCchhhhhhHHHHH
Confidence                                     56799999999976543 345789999999999964   3589999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||.+.+      ....+..+..  +..|                                      ...+..
T Consensus       205 yel~~g~~Pf~~~~------~~~~~~~i~~--~~~~--------------------------------------~~~~~~  238 (309)
T d1u5ra_         205 IELAERKPPLFNMN------AMSALYHIAQ--NESP--------------------------------------ALQSGH  238 (309)
T ss_dssp             HHHHHSSCTTTTSC------HHHHHHHHHH--SCCC--------------------------------------CCSCTT
T ss_pred             HHHHHCCCCCCCCC------HHHHHHHHHh--CCCC--------------------------------------CCCCCC
Confidence            99999999996432      2222222111  1000                                      011234


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .++++.+||.+||+.||.+|||++|+|+||||...
T Consensus       239 ~s~~~~~li~~~L~~dP~~Rpt~~ell~Hp~~~~~  273 (309)
T d1u5ra_         239 WSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRE  273 (309)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSC
T ss_pred             CCHHHHHHHHHHCcCChhHCcCHHHHHhCHHhcCC
Confidence            56889999999999999999999999999999754

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-54  Score=438.41  Aligned_cols=257  Identities=22%  Similarity=0.362  Sum_probs=209.9

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHS  116 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~  116 (530)
                      .++|+++++||+|+||+||+|+++.+|+.||||++.+..    .....+.+|..+++.+.+.   +|||||+++++|.  
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~---~hpnIv~l~~~~~--   77 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG---DCPFIVCMSYAFH--   77 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSS---CCTTBCCEEEEEE--
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcC---CCCcEEEEEEEEE--
Confidence            478999999999999999999999999999999986532    2234456676666666543   6999999999999  


Q ss_pred             CCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCC
Q 045988          117 GPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRK  195 (530)
Q Consensus       117 ~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~  195 (530)
                        ....+||||||| +++|.+++...  ..+++..++.|+.||+.||+|||++ |||||||||+||||+.          
T Consensus        78 --~~~~~~ivmE~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~ylH~~-~iiHrDlKP~NILl~~----------  142 (364)
T d1omwa3          78 --TPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNR-FVVYRDLKPANILLDE----------  142 (364)
T ss_dssp             --CSSEEEEEECCCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECS----------
T ss_pred             --ECCEEEEEEEecCCCcHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHC-CccceeeccceeEEcC----------
Confidence              457899999999 89999999754  4589999999999999999999997 9999999999999955          


Q ss_pred             CCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 045988          196 SGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNE  275 (530)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (364)
T d1omwa3         143 --------------------------------------------------------------------------------  142 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHH
Q 045988          276 ATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACIC  353 (530)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il  353 (530)
                                                ++.+||+|||+|+.... .....+||+.|+|||++.+ ..|+.++|||||||+|
T Consensus       143 --------------------------~g~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvil  196 (364)
T d1omwa3         143 --------------------------HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCML  196 (364)
T ss_dssp             --------------------------SSCEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHH
T ss_pred             --------------------------CCcEEEeeeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHH
Confidence                                      56799999999976543 3456689999999999974 5699999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|.+||.+.+...      .. .+...                                      +......++..
T Consensus       197 yemltG~~Pf~~~~~~~------~~-~~~~~--------------------------------------~~~~~~~~~~~  231 (364)
T d1omwa3         197 FKLLRGHSPFRQHKTKD------KH-EIDRM--------------------------------------TLTMAVELPDS  231 (364)
T ss_dssp             HHHHHSSCSSCSSCSSC------HH-HHHHH--------------------------------------SSSCCCCCCSS
T ss_pred             HHHHhCCCCCCCCCHHH------HH-HHHHh--------------------------------------cccCCCCCCCC
Confidence            99999999997543211      11 11111                                      11112234456


Q ss_pred             cHHHHHHHHhhccCcCCCCCcC-----HHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPT-----AAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpt-----a~elL~hp~f~~~  468 (530)
                      .++++.+||.+||+.||.+|||     |+|+|+||||+.-
T Consensus       232 ~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i  271 (364)
T d1omwa3         232 FSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSL  271 (364)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTC
T ss_pred             CCHHHHHHHHHHcccCHHHhCCCcccCHHHHHcCccccCC
Confidence            7789999999999999999999     8999999999863

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-55  Score=427.85  Aligned_cols=248  Identities=23%  Similarity=0.416  Sum_probs=206.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-------chHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-------YTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .++|++.++||+|+||+||+|+++.+|+.||||++++...       ....+.+|+.+|+++.+    .|||||+++++|
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~----~h~nIv~~~~~~   78 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS----GFSGVIRLLDWF   78 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCS----SSCSBCCEEEEE
T ss_pred             CCeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhcc----CCCCccEEEEEE
Confidence            5799999999999999999999999999999998875421       12346789999999964    589999999999


Q ss_pred             eecCCCCcEEEEEEecc-C-cCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-G-ENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~-~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      .    +...+|+||||+ + +++.+++...  ..+++..++.|+.||+.||+|||++ |||||||||+|||++.+     
T Consensus        79 ~----~~~~~~lv~e~~~~~~~l~~~~~~~--~~l~e~~~~~~~~qi~~al~~lH~~-~iiHrDiKp~NIll~~~-----  146 (273)
T d1xwsa_          79 E----RPDSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNC-GVLHRDIKDENILIDLN-----  146 (273)
T ss_dssp             E----CSSEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEETT-----
T ss_pred             e----eCCeEEEEEEeccCcchHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCccccCcccceEEecC-----
Confidence            8    457899999999 4 5777777643  4599999999999999999999997 99999999999999641     


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (273)
T d1xwsa_         147 --------------------------------------------------------------------------------  146 (273)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-ccCCCCCCCCccCChhhcCCCC-CCcchhHHH
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-QFTNDIQTRQYRCPEVLLGSKY-STPADLWSF  349 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~-~~~~DiWSl  349 (530)
                                                    ...+||+|||+|..... ..+..+||+.|+|||++.+..+ +.++|||||
T Consensus       147 ------------------------------~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSl  196 (273)
T d1xwsa_         147 ------------------------------RGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSL  196 (273)
T ss_dssp             ------------------------------TTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHH
T ss_pred             ------------------------------CCeEEECccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccc
Confidence                                          35799999999976433 3466789999999999987665 677999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          350 ACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       350 G~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      ||++|+|++|++||.+.         .   .                                          +......
T Consensus       197 Gvilyell~g~~Pf~~~---------~---~------------------------------------------i~~~~~~  222 (273)
T d1xwsa_         197 GILLYDMVCGDIPFEHD---------E---E------------------------------------------IIRGQVF  222 (273)
T ss_dssp             HHHHHHHHHSSCSCCSH---------H---H------------------------------------------HHHCCCC
T ss_pred             eeeehhHhhCCCCCCCc---------h---H------------------------------------------HhhcccC
Confidence            99999999999999531         1   0                                          1111122


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      ++...++++.+||.+||.+||.+|||++|+|+||||+.-
T Consensus       223 ~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~  261 (273)
T d1xwsa_         223 FRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDV  261 (273)
T ss_dssp             CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred             CCCCCCHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence            344567899999999999999999999999999999853

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=4.5e-54  Score=420.99  Aligned_cols=255  Identities=25%  Similarity=0.385  Sum_probs=210.0

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc----------chHHHHHHHHHHHHhhcCCCCCCcceeEec
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH----------YTEAALDEIKILKQIAEGDPDDKKCVVKLL  110 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~----------~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~  110 (530)
                      .++|++.+.||+|+||+||+|+++.+|+.||||++.+...          ..+.+.+|+.+|++|.     .|||||+++
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----~hpnIv~~~   76 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS-----GHPNIIQLK   76 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHT-----TCTTBCCEE
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEEE
Confidence            4789999999999999999999999999999999875421          2346789999999994     489999999


Q ss_pred             ceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCC
Q 045988          111 DHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDP  189 (530)
Q Consensus       111 ~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~  189 (530)
                      ++|.    +..++||||||| +++|.+++...  ..+++..++.|+.||+.||+|||++ |||||||||+|||++.    
T Consensus        77 ~~~~----~~~~~~ivmE~~~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~Nill~~----  145 (277)
T d1phka_          77 DTYE----TNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKL-NIVHRDLKPENILLDD----  145 (277)
T ss_dssp             EEEE----CSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT----
T ss_pred             eecc----cCcceEEEEEcCCCchHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHc-CCcccccccceEEEcC----
Confidence            9999    558999999999 88999999753  4599999999999999999999997 9999999999999954    


Q ss_pred             CCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 045988          190 SKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNG  269 (530)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (277)
T d1phka_         146 --------------------------------------------------------------------------------  145 (277)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc--ccCCCCCCCCccCChhhcC------CCCC
Q 045988          270 SLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK--QFTNDIQTRQYRCPEVLLG------SKYS  341 (530)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~--~~~~~~gt~~y~aPE~l~~------~~~~  341 (530)
                                                      ++.+||+|||+++....  .....+||+.|+|||++.+      ..|+
T Consensus       146 --------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~  193 (277)
T d1phka_         146 --------------------------------DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYG  193 (277)
T ss_dssp             --------------------------------TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBC
T ss_pred             --------------------------------CCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCC
Confidence                                            56799999999976533  3456789999999999862      3478


Q ss_pred             CcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCch
Q 045988          342 TPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLN  421 (530)
Q Consensus       342 ~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (530)
                      .++||||+||++|+|++|.+||.+.+      .......+...--..                                 
T Consensus       194 ~~~DiwslGvilyeml~g~~Pf~~~~------~~~~~~~i~~~~~~~---------------------------------  234 (277)
T d1phka_         194 KEVDMWSTGVIMYTLLAGSPPFWHRK------QMLMLRMIMSGNYQF---------------------------------  234 (277)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCC---------------------------------
T ss_pred             chheEcccchhhhhhccCCCCCCCCC------HHHHHHHHHhCCCCC---------------------------------
Confidence            99999999999999999999997543      222222222110000                                 


Q ss_pred             hhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          422 KVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                           ........++++++||.+||+.||.+|||++|||+||||++
T Consensus       235 -----~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~~  275 (277)
T d1phka_         235 -----GSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQ  275 (277)
T ss_dssp             -----CTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCT
T ss_pred             -----CCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHHHH
Confidence                 00112356789999999999999999999999999999985

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-55  Score=434.94  Aligned_cols=251  Identities=26%  Similarity=0.427  Sum_probs=210.7

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      ++|+++++||+|+||+||+|+++.+|+.||||++++.    ....+.+.+|+.++.+..     +|||||+++++|.   
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~-----~hp~Iv~~~~~~~---   73 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-----EHPFLTHMFCTFQ---   73 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHT-----TCTTBCCEEEEEE---
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhC-----CCCcEEEEEEEEc---
Confidence            5799999999999999999999999999999998753    234556778888776432     7999999999999   


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ++..+||||||| +|+|.+++...  ..+++..++.++.||+.||+|||++ |||||||||+|||++.           
T Consensus        74 -~~~~~yivmEy~~~g~L~~~i~~~--~~~~e~~~~~~~~qi~~al~ylH~~-~iiHrDikp~NiL~~~-----------  138 (320)
T d1xjda_          74 -TKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSK-GIVYRDLKLDNILLDK-----------  138 (320)
T ss_dssp             -CSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEECT-----------
T ss_pred             -cCCceeEEEeecCCCcHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCcccceeecC-----------
Confidence             557899999999 88999999743  3499999999999999999999997 9999999999999965           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (320)
T d1xjda_         139 --------------------------------------------------------------------------------  138 (320)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc---cccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY---KQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                               .+.+||+|||+|+...   ......+||+.|+|||++.+..|+.++|||||||++
T Consensus       139 -------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil  193 (320)
T d1xjda_         139 -------------------------DGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLL  193 (320)
T ss_dssp             -------------------------TSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHH
T ss_pred             -------------------------CCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHH
Confidence                                     4679999999997533   234556899999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|+.||.+.+      ....+..                                          +....+.++..
T Consensus       194 yemltG~~PF~~~~------~~~~~~~------------------------------------------i~~~~~~~p~~  225 (320)
T d1xjda_         194 YEMLIGQSPFHGQD------EEELFHS------------------------------------------IRMDNPFYPRW  225 (320)
T ss_dssp             HHHHHSSCSSCCSS------HHHHHHH------------------------------------------HHHCCCCCCTT
T ss_pred             HHHHhCCCCCCCCC------HHHHHHH------------------------------------------HHcCCCCCCcc
Confidence            99999999997543      1122211                                          11222344556


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHH-HHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAA-QCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~-elL~hp~f~~~  468 (530)
                      .++++.+||.+||+.||.+|||+. |+++||||+.-
T Consensus       226 ~s~~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~~  261 (320)
T d1xjda_         226 LEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREI  261 (320)
T ss_dssp             SCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTC
T ss_pred             CCHHHHHHHHHhcccCCCCCcCHHHHHHhCchhccC
Confidence            788999999999999999999995 89999999863

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-53  Score=432.76  Aligned_cols=281  Identities=25%  Similarity=0.391  Sum_probs=223.0

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC--CCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG--PNG  120 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~--~~~  120 (530)
                      +|+.+++||+|+||+||+|+++.+|+.||||++.....   ...+|+++|++|      +|||||+++++|...+  .+.
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~---~~~~Ei~il~~l------~h~niv~~~~~~~~~~~~~~~   91 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---FKNRELQIMRKL------DHCNIVRLRYFFYSSGEKKDE   91 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS---SCCHHHHHHHHC------CCTTBCCEEEEEEEC--CCSC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch---HHHHHHHHHHhc------CCCCCCcEEEEEEecCccCCc
Confidence            79999999999999999999999999999999876543   334799999999      7889999999997643  244


Q ss_pred             cEEEEEEeccCcCHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYA--DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~--~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      .++|||||||++++...+...  ....+++..++.|++||+.||+|||++ |||||||||+||||+..            
T Consensus        92 ~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~-~IiHrDiKp~NILl~~~------------  158 (350)
T d1q5ka_          92 VYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF-GICHRDIKPQNLLLDPD------------  158 (350)
T ss_dssp             CEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECTT------------
T ss_pred             eEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc-CCcccCCCcceEEEecC------------
Confidence            678999999987776665432  334599999999999999999999997 99999999999999541            


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (350)
T d1q5ka_         159 --------------------------------------------------------------------------------  158 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcC-CCCCCcchhHHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLG-SKYSTPADLWSFACICFE  355 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiWSlG~il~e  355 (530)
                                             ...+||+|||++....  ......+||+.|+|||++.+ ..|+.++|||||||++||
T Consensus       159 -----------------------~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~e  215 (350)
T d1q5ka_         159 -----------------------TAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAE  215 (350)
T ss_dssp             -----------------------TCCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHH
T ss_pred             -----------------------CCceeEecccchhhccCCcccccccccccccChHHhhcccCCCcceeecccceEEEe
Confidence                                   2368999999997543  33556789999999999876 468999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcc--cccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          356 LATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYS--RDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       356 lltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |++|.+||...+      ..+++..+...+|.++.+.+......  ...+....         ..+..      -.....
T Consensus       216 l~~g~~pf~~~~------~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~------~~~~~~  274 (350)
T d1q5ka_         216 LLLGQPIFPGDS------GVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIK---------AHPWT------KVFRPR  274 (350)
T ss_dssp             HHHTSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCC---------CCCGG------GTSCTT
T ss_pred             hhhCCCCCCCCC------HHHHHHHHHHHhCCChHHhhhhhccchhhccccccc---------cCchh------hhcccC
Confidence            999999997544      67888999999999887665322111  01110000         00000      012234


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                      .++++.+||.+||++||.+||||.|+|+||||++..
T Consensus       275 ~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         275 TPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             SCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence            578899999999999999999999999999998653

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.7e-53  Score=419.82  Aligned_cols=278  Identities=29%  Similarity=0.428  Sum_probs=217.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|+++++||+|+||+||+|+++ +|+.||||+++...   .....+.+|+.+|+++      +|||||+++++|.    
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~~~~~~~----   70 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKEL------KHSNIVKLYDVIH----   70 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGC------CCTTBCCEEEEEE----
T ss_pred             CCceeccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhC------CCCcEEeeeeecc----
Confidence            69999999999999999999985 78999999986542   3356788999999998      7889999999999    


Q ss_pred             CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       119 ~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                      .....++|||++++++...+.. ....+++..++.|+.||+.||+|||++ |||||||||+|||++.             
T Consensus        71 ~~~~~~i~~e~~~~~~~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~-~IvHrDiKp~NIll~~-------------  135 (286)
T d1ob3a_          71 TKKRLVLVFEHLDQDLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCHDR-RVLHRDLKPQNLLINR-------------  135 (286)
T ss_dssp             CSSCEEEEEECCSEEHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT-------------
T ss_pred             cCCceeEEEEeehhhhHHHHHh-hcCCcchhhhHHHHHHHHHHHHHhccC-cEEecCCCCceeeEcC-------------
Confidence            4578999999996666666643 345699999999999999999999997 9999999999999955             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (286)
T d1ob3a_         136 --------------------------------------------------------------------------------  135 (286)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCC-CCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGS-KYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~-~~~~~~DiWSlG~il~  354 (530)
                                             ++.+||+|||.|......   ....+|++.|+|||++.+. .++.++|||||||++|
T Consensus       136 -----------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~  192 (286)
T d1ob3a_         136 -----------------------EGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFA  192 (286)
T ss_dssp             -----------------------TSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHH
T ss_pred             -----------------------CCCEEecccccceecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHH
Confidence                                   567999999999764332   3445789999999999865 4799999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          355 ELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       355 elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      +|++|++||.+.+      ..+++..+...+|.++...+........+......           ...  .....+....
T Consensus       193 el~~G~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~  253 (286)
T d1ob3a_         193 EMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTV-----------YEP--LPWESFLKGL  253 (286)
T ss_dssp             HHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCC-----------CCC--CCGGGTCCSC
T ss_pred             HHHHCCCCCCCCC------HHHHHHHHHHhhCCCChhhccchhhhhhccccccc-----------ccC--cchhhhcccC
Confidence            9999999997544      57788888888888776554322111111000000           000  0011233456


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      ++++.|||.+||++||++|||++|+|+||||++
T Consensus       254 s~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         254 DESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence            788999999999999999999999999999974

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-53  Score=427.52  Aligned_cols=299  Identities=28%  Similarity=0.422  Sum_probs=231.5

Q ss_pred             CCCccccccCcEee--CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCC
Q 045988           27 RGGYHAVRMGDTFK--NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPD  101 (530)
Q Consensus        27 ~~~~~~~~~g~~~~--~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~  101 (530)
                      +++|+.+.++.++.  .++|+++++||+|+||+||+|+++.+|+.||||++++..   .....+.+|+++|++|      
T Consensus         1 ~~~~~~~~~~~~~~~~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l------   74 (348)
T d2gfsa1           1 RPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM------   74 (348)
T ss_dssp             CCCEEEEECSSSEEEEETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHC------
T ss_pred             CCCcEEEecCCccccCCCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhc------
Confidence            46788888866443  479999999999999999999999999999999987643   2345678999999999      


Q ss_pred             CCcceeEecceeeecC--CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCC
Q 045988          102 DKKCVVKLLDHFKHSG--PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPE  179 (530)
Q Consensus       102 ~h~~Iv~~~~~~~~~~--~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~  179 (530)
                      .|||||+++++|....  .+....+++|++++++|.+++..   +.+++..++.++.||+.||+|||++ |||||||||+
T Consensus        75 ~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH~~-giiHrDiKp~  150 (348)
T d2gfsa1          75 KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPS  150 (348)
T ss_dssp             CCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGG
T ss_pred             CCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHHhC-CCcccccCCc
Confidence            7888999999987542  12344566555559999998853   4599999999999999999999997 9999999999


Q ss_pred             cEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCC
Q 045988          180 NVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPN  259 (530)
Q Consensus       180 NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (530)
                      |||++.                                                                          
T Consensus       151 NILi~~--------------------------------------------------------------------------  156 (348)
T d2gfsa1         151 NLAVNE--------------------------------------------------------------------------  156 (348)
T ss_dssp             GEEECT--------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            999955                                                                          


Q ss_pred             CCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCC
Q 045988          260 GDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSK  339 (530)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~  339 (530)
                                                                ++.+|++|||.|...........||+.|+|||++.+..
T Consensus       157 ------------------------------------------~~~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~  194 (348)
T d2gfsa1         157 ------------------------------------------DCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWM  194 (348)
T ss_dssp             ------------------------------------------TCCEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCS
T ss_pred             ------------------------------------------cccccccccchhcccCcccccccccccccCchhhcCCc
Confidence                                                      46799999999988877778889999999999988765


Q ss_pred             -CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccc--ccccccCccccchhcc
Q 045988          340 -YSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSR--DFFNRHGDLRHIRRLR  416 (530)
Q Consensus       340 -~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~  416 (530)
                       ++.++|||||||++|+|++|.+||.+.+      .......+....+..+..+........  .+.........     
T Consensus       195 ~~~~~~DiwSlGv~l~~ll~g~~pF~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  263 (348)
T d2gfsa1         195 HYNQTVDIWSVGCIMAELLTGRTLFPGTD------HIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPK-----  263 (348)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCC-----
T ss_pred             cCCcccchhhhhHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCC-----
Confidence             6899999999999999999999997654      667778888888887766553222110  00000000000     


Q ss_pred             cCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                       ..+.       ......++++++||.+||++||.+||||+|+|+||||++...
T Consensus       264 -~~~~-------~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~  309 (348)
T d2gfsa1         264 -MNFA-------NVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  309 (348)
T ss_dssp             -CCHH-------HHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             -cchh-------hhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCC
Confidence             0000       011245788999999999999999999999999999997543

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-53  Score=421.27  Aligned_cols=288  Identities=27%  Similarity=0.401  Sum_probs=219.0

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC-
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG-  117 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~-  117 (530)
                      ++|+++++||+|+||+||+|+++.+|+.||||++...   ......+.+|+.+|+++      +||||+++++++.... 
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l------~h~nii~~~~~~~~~~~   83 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL------KHENVVNLIEICRTKAS   83 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHC------CCTTBCCEEEEEEC---
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHh------cCCCccceEeeeecccc
Confidence            7999999999999999999999999999999987654   23456788999999999      7888999999986531 


Q ss_pred             ---CCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          118 ---PNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       118 ---~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                         ....++|+|||||++++...+.. ....+++..++.+++||+.||+|||++ |||||||||+|||++.         
T Consensus        84 ~~~~~~~~~~iv~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~qil~~l~~lH~~-~ivHrDlKp~NILl~~---------  152 (318)
T d3blha1          84 PYNRCKGSIYLVFDFCEHDLAGLLSN-VLVKFTLSEIKRVMQMLLNGLYYIHRN-KILHRDMKAANVLITR---------  152 (318)
T ss_dssp             -------CEEEEEECCCEEHHHHHTC-TTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECT---------
T ss_pred             cccccCceEEEEEeccCCCccchhhh-cccccccHHHHHHHHHHHHHHHHhccC-CEEecCcCchheeecC---------
Confidence               12357899999997777666543 334599999999999999999999997 9999999999999955         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (318)
T d3blha1         153 --------------------------------------------------------------------------------  152 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc-------cccCCCCCCCCccCChhhcCC-CCCCcchh
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY-------KQFTNDIQTRQYRCPEVLLGS-KYSTPADL  346 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~-------~~~~~~~gt~~y~aPE~l~~~-~~~~~~Di  346 (530)
                                                 ++.+||+|||++....       ......+||+.|+|||++.+. .|+.++||
T Consensus       153 ---------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~Di  205 (318)
T d3blha1         153 ---------------------------DGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDL  205 (318)
T ss_dssp             ---------------------------TSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHH
T ss_pred             ---------------------------CCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHc
Confidence                                       4679999999996432       123445799999999999865 68999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|++||.+..      +...+..+...++..+...+........+. ........    .......+. 
T Consensus       206 wSlGvil~el~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~-  273 (318)
T d3blha1         206 WGAGCIMAEMWTRSPIMQGNT------EQHQLALISQLCGSITPEVWPNVDNYELYE-KLELVKGQ----KRKVKDRLK-  273 (318)
T ss_dssp             HHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTCCCC--------CCSSC----CBCHHHHHH-
T ss_pred             ccCCceeeeHhhCCCCCCCCC------HHHHHHHHHHhcCCCChhhccccchhhhhh-hhcccccc----cccchhhhc-
Confidence            999999999999999997543      678888899999988776543322111110 00000000    000011110 


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGP  469 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~  469 (530)
                          ....+++++|||.+||++||++||||+|+|+||||+..|
T Consensus       274 ----~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~p  312 (318)
T d3blha1         274 ----AYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP  312 (318)
T ss_dssp             ----HHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSSS
T ss_pred             ----cccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhccCC
Confidence                112356788999999999999999999999999999654

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1.3e-52  Score=421.69  Aligned_cols=294  Identities=23%  Similarity=0.359  Sum_probs=223.3

Q ss_pred             CccccccCcEeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeE
Q 045988           29 GYHAVRMGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVK  108 (530)
Q Consensus        29 ~~~~~~~g~~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~  108 (530)
                      ..+++..+.   .++|+++++||+|+||+||+|+++.+|+.||||+++...  ...+.+|+.+|+++.     .||||++
T Consensus        25 ~~~~~~~~~---~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~Ei~il~~l~-----~hpnIv~   94 (328)
T d3bqca1          25 ESHVVEWGN---QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--KKKIKREIKILENLR-----GGPNIIT   94 (328)
T ss_dssp             GGCCCCCCC---GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC--HHHHHHHHHHHHHHT-----TSTTBCC
T ss_pred             hhcccCCCC---CcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH--HHHHHHHHHHHHhcc-----CCCCCcE
Confidence            456666664   468999999999999999999999999999999987643  567889999999995     5899999


Q ss_pred             ecceeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeecc
Q 045988          109 LLDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMI  187 (530)
Q Consensus       109 ~~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~  187 (530)
                      ++++|...  ....+++||||| +++|..+.     +.+++..++.++.||+.||+|||++ |||||||||+||||+.. 
T Consensus        95 ~~~~~~~~--~~~~~~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~-gIvHrDiKp~NILi~~~-  165 (328)
T d3bqca1          95 LADIVKDP--VSRTPALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSM-GIMHRDVKPHNVMIDHE-  165 (328)
T ss_dssp             EEEEEECT--TTCSEEEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEETT-
T ss_pred             EEEEEEec--CCCceeEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhc-ccccccccccceEEcCC-
Confidence            99999854  446799999999 67775542     3599999999999999999999997 99999999999999641 


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 045988          188 DPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQ  267 (530)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (530)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (328)
T d3bqca1         166 --------------------------------------------------------------------------------  165 (328)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc--cccCCCCCCCCccCChhhcCCC-CCCcc
Q 045988          268 NGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY--KQFTNDIQTRQYRCPEVLLGSK-YSTPA  344 (530)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~--~~~~~~~gt~~y~aPE~l~~~~-~~~~~  344 (530)
                                                        ...++|+|||+|....  ......+||+.|+|||++.+.. |+.++
T Consensus       166 ----------------------------------~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~  211 (328)
T d3bqca1         166 ----------------------------------HRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSL  211 (328)
T ss_dssp             ----------------------------------TTEEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHH
T ss_pred             ----------------------------------CCeeeecccccceeccCCCcccccccCccccCcccccCCCCCCccc
Confidence                                              2358999999997643  3456678999999999988754 89999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhc-CCC-cccccccccCccccchhcccCCchh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAF-GGR-YSRDFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      |||||||++|+|++|..||....     ...++...+...+|.+....+. ... .....+..........     ....
T Consensus       212 DiwslG~~l~e~~~g~~pf~~~~-----~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  281 (328)
T d3bqca1         212 DMWSLGCMLASMIFRKEPFFHGH-----DNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRK-----RWER  281 (328)
T ss_dssp             HHHHHHHHHHHHHHTCSSSSCCS-----SHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCC-----CGGG
T ss_pred             chhhhhhhhHHhccCCCCCCCCc-----hhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhccccccc-----chhh
Confidence            99999999999999999996432     2456677777777754332221 110 0000111000000000     0000


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINV  467 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~  467 (530)
                      .  .........+++++|||++||++||.+||||+|||+||||+.
T Consensus       282 ~--~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~  324 (328)
T d3bqca1         282 F--VHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYT  324 (328)
T ss_dssp             G--CCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTT
T ss_pred             c--ccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCC
Confidence            0  001122345788999999999999999999999999999985

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-52  Score=418.97  Aligned_cols=290  Identities=27%  Similarity=0.419  Sum_probs=219.9

Q ss_pred             CcEee-CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           36 GDTFK-NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        36 g~~~~-~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      |+.+. +.+|+++++||+|+||+||+|+++.+|+.||||++.+..  ...+.+.+|+.+|++|      +||||++++++
T Consensus         1 ~~~~~i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l------~hp~iv~~~~~   74 (345)
T d1pmea_           1 GQVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRF------RHENIIGINDI   74 (345)
T ss_dssp             CCCCCCCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHC------CCTTBCCCCEE
T ss_pred             CCccCcCCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHc------CCCCCCcEEEE
Confidence            34442 368999999999999999999999999999999987543  3345778999999999      78889999999


Q ss_pred             eeecCC-CCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGP-NGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~-~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +....- ...++||+|++++++|.+++..   ..+++..++.++.||+.||+|||++ |||||||||+||||+.      
T Consensus        75 ~~~~~~~~~~~~~l~~~~~~g~L~~~l~~---~~l~~~~i~~i~~qil~al~yLH~~-~iiHRDIKp~NILl~~------  144 (345)
T d1pmea_          75 IRAPTIEQMKDVYLVTHLMGADLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSA-NVLHRDLKPSNLLLNT------  144 (345)
T ss_dssp             ECCSSTTTCCCEEEEEECCCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECT------
T ss_pred             EeeccccccceEEEEEeecCCchhhhhhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CCcCCCCCcceEEECC------
Confidence            875421 2245777777779999999964   3599999999999999999999997 9999999999999954      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (345)
T d1pmea_         145 --------------------------------------------------------------------------------  144 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc------ccCCCCCCCCccCChhhcC-CCCCCcc
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK------QFTNDIQTRQYRCPEVLLG-SKYSTPA  344 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~------~~~~~~gt~~y~aPE~l~~-~~~~~~~  344 (530)
                                                    ++.+||+|||+|.....      .....+||+.|+|||++.. ..|+.++
T Consensus       145 ------------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~  194 (345)
T d1pmea_         145 ------------------------------TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSI  194 (345)
T ss_dssp             ------------------------------TCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHH
T ss_pred             ------------------------------CCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchh
Confidence                                          46799999999965322      2355679999999999854 4589999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCccc--ccccccCccccchhcccCCchh
Q 045988          345 DLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSR--DFFNRHGDLRHIRRLRFWPLNK  422 (530)
Q Consensus       345 DiWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  422 (530)
                      ||||+||++|+|++|.+||.+.+      ..+....+...++.+............  .++....      .....++. 
T Consensus       195 DiwSlG~il~eml~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-  261 (345)
T d1pmea_         195 DIWSVGCILAEMLSNRPIFPGKH------YLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLP------HKNKVPWN-  261 (345)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSC------CCCCCCHH-
T ss_pred             hhhccCceehHHhhCCCCCCCCC------HHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCC------ccCCCCHH-
Confidence            99999999999999999997544      566777777777776655432221100  0000000      00000000 


Q ss_pred             hhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCCCC
Q 045988          423 VLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWINVGPR  470 (530)
Q Consensus       423 ~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~~~  470 (530)
                            ......++++++||.+||++||.+||||+|+|+||||+....
T Consensus       262 ------~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~~  303 (345)
T d1pmea_         262 ------RLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYD  303 (345)
T ss_dssp             ------HHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTCC
T ss_pred             ------HhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccCCC
Confidence                  112245678999999999999999999999999999997654

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.2e-52  Score=408.70  Aligned_cols=259  Identities=24%  Similarity=0.332  Sum_probs=202.0

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc----cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      .| .++|++.+.||+|+||+||+|++..+|+.||||+++...    .....+.+|+++|+.+      +|||||++++++
T Consensus         4 ~l-~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~------~hpniv~~~~~~   76 (277)
T d1o6ya_           4 HL-SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL------NHPAIVAVYDTG   76 (277)
T ss_dssp             EE-TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTC------CCTTBCCEEEEE
T ss_pred             Cc-cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhc------CCCCCCccccee
Confidence            34 678999999999999999999999999999999987542    2345678999999988      789999999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      .........+||||||| +++|..++...  +.+++.+++.|+.||+.||+|||++ |||||||||+|||++.       
T Consensus        77 ~~~~~~~~~~~lvmE~~~g~~L~~~~~~~--~~l~~~~~~~i~~qi~~al~~lH~~-~iiHrDiKP~NIll~~-------  146 (277)
T d1o6ya_          77 EAETPAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQN-GIIHRDVKPANIMISA-------  146 (277)
T ss_dssp             EEECSSSEEEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEET-------
T ss_pred             eeccCCCceEEEEEECCCCCEehhhhccc--CCCCHHHHHHHHHHHHHHHHHHHhC-CccCccccCcccccCc-------
Confidence            98765567899999999 88999888643  4599999999999999999999997 9999999999999965       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (277)
T d1o6ya_         147 --------------------------------------------------------------------------------  146 (277)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccc------cccCCCCCCCCccCChhhcCCCCCCcchh
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTY------KQFTNDIQTRQYRCPEVLLGSKYSTPADL  346 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~------~~~~~~~gt~~y~aPE~l~~~~~~~~~Di  346 (530)
                                                   +..++|+|||.+....      ......+||+.|+|||++.+..|+.++||
T Consensus       147 -----------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~Di  197 (277)
T d1o6ya_         147 -----------------------------TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDV  197 (277)
T ss_dssp             -----------------------------TSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHH
T ss_pred             -----------------------------cccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceec
Confidence                                         4568999999886432      12445689999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||++|+|++|.+||.+.+      ....+..+...-..++                                     
T Consensus       198 wSlGvilyelltG~~Pf~~~~------~~~~~~~~~~~~~~~~-------------------------------------  234 (277)
T d1o6ya_         198 YSLGCVLYEVLTGEPPFTGDS------PVSVAYQHVREDPIPP-------------------------------------  234 (277)
T ss_dssp             HHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHCCCCCG-------------------------------------
T ss_pred             ccchHHHHHHHhCCCCCCCcC------HHHHHHHHHhcCCCCC-------------------------------------
Confidence            999999999999999996433      1222222211100000                                     


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTHPWIN  466 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~  466 (530)
                       .......++++.+||.+||++||.+||+..+.|.|+|++
T Consensus       235 -~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r  273 (277)
T d1o6ya_         235 -SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR  273 (277)
T ss_dssp             -GGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             -chhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHH
Confidence             012235678899999999999999999555555567654

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-52  Score=410.18  Aligned_cols=250  Identities=22%  Similarity=0.318  Sum_probs=208.7

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +..++|++.++||+|+||+||+|+++.+++.||||+++......+.+.+|+++|++|      +|||||+++++|.    
T Consensus        14 i~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~~----   83 (287)
T d1opja_          14 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLVQLLGVCT----   83 (287)
T ss_dssp             CCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHC------CCTTBCCEEEEEC----
T ss_pred             ecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhC------CCCCEecCCccEe----
Confidence            345789999999999999999999999999999999988777778899999999999      7899999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      ++..++|||||| +|+|.+++.......+++..+..|+.||+.||+|||++ |||||||||+||||+.            
T Consensus        84 ~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~-~iiHrDlKp~NILl~~------------  150 (287)
T d1opja_          84 REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLVGE------------  150 (287)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECG------------
T ss_pred             eCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC-CcccCccccCeEEECC------------
Confidence            457899999999 89999999766666799999999999999999999997 9999999999999965            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (287)
T d1opja_         151 --------------------------------------------------------------------------------  150 (287)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                              ++.+||+|||+|+.....    .....||+.|+|||++.+..|+.++|||||||++
T Consensus       151 ------------------------~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l  206 (287)
T d1opja_         151 ------------------------NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLL  206 (287)
T ss_dssp             ------------------------GGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHH
T ss_pred             ------------------------CCcEEEccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHH
Confidence                                    567999999999764322    2334578999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |||++|..||....      +...+..++.. +                                       .....+..
T Consensus       207 ~ell~~~~p~~~~~------~~~~~~~~i~~-~---------------------------------------~~~~~~~~  240 (287)
T d1opja_         207 WEIATYGMSPYPGI------DLSQVYELLEK-D---------------------------------------YRMERPEG  240 (287)
T ss_dssp             HHHHTTSCCSSTTC------CHHHHHHHHHT-T---------------------------------------CCCCCCTT
T ss_pred             HHHHhCCCCCCCcc------hHHHHHHHHhc-C---------------------------------------CCCCCCcc
Confidence            99999776653221      22222211110 0                                       01123445


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .++++.+||.+||+.||.+|||++|+++
T Consensus       241 ~~~~l~~li~~cl~~dP~~Rps~~ei~~  268 (287)
T d1opja_         241 CPEKVYELMRACWQWNPSDRPSFAEIHQ  268 (287)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             chHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            6789999999999999999999999976

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-51  Score=405.97  Aligned_cols=280  Identities=29%  Similarity=0.420  Sum_probs=219.8

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ++|+++++||+|+||+||+|+++.+++.||||+++...   .....+.+|+.+|+.+      .|||||+++++|.    
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l------~h~niv~~~~~~~----   71 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL------KHKNIVRLHDVLH----   71 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTC------CCTTBCCEEEEEE----
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhc------CcCCEEeeccccc----
Confidence            68999999999999999999999999999999986543   3356778999999988      7889999999998    


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                      .....++||+++ +++|..++.  ..+.+++..++.++.|++.||+|||++ |||||||||+|||++.            
T Consensus        72 ~~~~~~iv~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~q~~~aL~~lH~~-~IvHrDiKP~NIli~~------------  136 (292)
T d1unla_          72 SDKKLTLVFEFCDQDLKKYFDS--CNGDLDPEIVKSFLFQLLKGLGFCHSR-NVLHRDLKPQNLLINR------------  136 (292)
T ss_dssp             CSSEEEEEEECCSEEHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECT------------
T ss_pred             cccceeEEeeeccccccccccc--cccccchhHHHHHHHHHHHHHHHhhcC-CEeeecccCccccccc------------
Confidence            457899999999 666655554  345699999999999999999999997 9999999999999954            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (292)
T d1unla_         137 --------------------------------------------------------------------------------  136 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc---cCCCCCCCCccCChhhcCCC-CCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ---FTNDIQTRQYRCPEVLLGSK-YSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~---~~~~~gt~~y~aPE~l~~~~-~~~~~DiWSlG~il  353 (530)
                                              ...+||+|||.|......   .....+++.|+|||++.+.. ++.++|||||||++
T Consensus       137 ------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il  192 (292)
T d1unla_         137 ------------------------NGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIF  192 (292)
T ss_dssp             ------------------------TCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHH
T ss_pred             ------------------------CCceeeeecchhhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccchHH
Confidence                                    456999999999765432   34456788999999998765 69999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |+|++|..||....     ...+.+..+....+.++...+........+..             .+..............
T Consensus       193 ~ell~g~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~  254 (292)
T d1unla_         193 AELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKP-------------YPMYPATTSLVNVVPK  254 (292)
T ss_dssp             HHHTTTSCCSCCCS-----SHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCC-------------CCCCCTTCCCTTTSTT
T ss_pred             HHHhhCCCCCCCCC-----CHHHHHHHHHhhcCCCChhhhhhhhhcccccc-------------cccccccchhhhcccc
Confidence            99999999874322     25567777888888776554322111111100             0001111112233445


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhcCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLTHPWINVG  468 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~hp~f~~~  468 (530)
                      .++.+.+||.+||++||.+||||+|+|+||||++-
T Consensus       255 ~s~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~~  289 (292)
T d1unla_         255 LNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDF  289 (292)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGSSC
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhcChhhcCC
Confidence            67889999999999999999999999999999863

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-52  Score=405.34  Aligned_cols=251  Identities=20%  Similarity=0.373  Sum_probs=205.5

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCC
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPN  119 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~  119 (530)
                      ..++|++.++||+|+||+||+|+++ +++.||||+++......+.+.+|+.+|+++      +|||||++++++..    
T Consensus        11 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~~~g~~~~----   79 (272)
T d1qpca_          11 PRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMSPDAFLAEANLMKQL------QHQRLVRLYAVVTQ----   79 (272)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS----
T ss_pred             CHHHeEEeEEEecCCCcEEEEEEEC-CCCEEEEEEEccCcCCHHHHHHHHHHHHhC------CCCCEeEEEeeecc----
Confidence            3578999999999999999999975 678999999988777778899999999999      78899999998753    


Q ss_pred             CcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCC
Q 045988          120 GQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGP  198 (530)
Q Consensus       120 ~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~  198 (530)
                       ..+||||||| +|+|.+++.......+++..+..|+.||+.||+|||++ ||+||||||+||||+.             
T Consensus        80 -~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~-~ivHrDiKp~NIll~~-------------  144 (272)
T d1qpca_          80 -EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER-NYIHRDLRAANILVSD-------------  144 (272)
T ss_dssp             -SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECT-------------
T ss_pred             -CCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCccchhheeeec-------------
Confidence             3579999999 89999887655555699999999999999999999997 9999999999999965             


Q ss_pred             CCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 045988          199 PPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATS  278 (530)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (272)
T d1qpca_         145 --------------------------------------------------------------------------------  144 (272)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHH
Q 045988          279 NEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICF  354 (530)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~  354 (530)
                                             ++.+||+|||+|+....    ......||+.|+|||++.+..|+.++|||||||++|
T Consensus       145 -----------------------~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~  201 (272)
T d1qpca_         145 -----------------------TLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLT  201 (272)
T ss_dssp             -----------------------TSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHH
T ss_pred             -----------------------ccceeeccccceEEccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHH
Confidence                                   56799999999976432    234567899999999999888999999999999999


Q ss_pred             HHHhCC-CCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          355 ELATGD-VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       355 elltG~-~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      ||+||. +||...+      ..+.+..+..  |                                       .....+..
T Consensus       202 ellt~~~~~~~~~~------~~~~~~~i~~--~---------------------------------------~~~~~p~~  234 (272)
T d1qpca_         202 EIVTHGRIPYPGMT------NPEVIQNLER--G---------------------------------------YRMVRPDN  234 (272)
T ss_dssp             HHHTTTCCSSTTCC------HHHHHHHHHT--T---------------------------------------CCCCCCTT
T ss_pred             HHHhCCCCCCCCCC------HHHHHHHHHh--c---------------------------------------CCCCCccc
Confidence            999965 5553221      1111111110  0                                       01123345


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhc--CCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLT--HPWIN  466 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~--hp~f~  466 (530)
                      .++++.+||.+||+.||++|||++|+++  |+||+
T Consensus       235 ~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         235 CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence            6788999999999999999999999998  88886

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-51  Score=397.21  Aligned_cols=248  Identities=20%  Similarity=0.363  Sum_probs=195.8

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +...+|++.++||+|+||+||+|++. +++.||||+++......+.+.+|+++++++      +|||||++++++..   
T Consensus         2 idp~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l------~HpnIv~~~g~~~~---   71 (263)
T d1sm2a_           2 IDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKL------SHPKLVQLYGVCLE---   71 (263)
T ss_dssp             BCCSCEEEEEEEECCSSCCEEEEEET-TTEEEEEEECCSSSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS---
T ss_pred             CChHHcEEEEEEeeCCCeEEEEEEEC-CCCEEEEEEECCCcCcHHHHHHHHHHHHhc------CCCCcccccceecc---
Confidence            34578999999999999999999875 577899999988777778899999999999      78899999999984   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ...++|||||| +++|.+++... ...+++..+..|+.||+.||+|||++ +|+||||||+|||++.            
T Consensus        72 -~~~~~lv~E~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qia~gl~~lH~~-~iiHrDlKp~Nill~~------------  136 (263)
T d1sm2a_          72 -QAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEA-CVIHRDLAARNCLVGE------------  136 (263)
T ss_dssp             -SSSCEEEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCTTCSGGGEEECG------------
T ss_pred             -CCceEEEEEecCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHhhhcc-ceeecccchhheeecC------------
Confidence             46799999999 89999988643 34589999999999999999999997 9999999999999965            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (263)
T d1sm2a_         137 --------------------------------------------------------------------------------  136 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                              ++.+||+|||+|+.....    .....||+.|+|||++.+..|+.++|||||||++
T Consensus       137 ------------------------~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil  192 (263)
T d1sm2a_         137 ------------------------NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLM  192 (263)
T ss_dssp             ------------------------GGCEEECSCC------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             ------------------------CCCeEecccchheeccCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHH
Confidence                                    567999999999754322    2345789999999999999999999999999999


Q ss_pred             HHHHhC-CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCCh
Q 045988          354 FELATG-DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSE  432 (530)
Q Consensus       354 ~elltG-~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (530)
                      |||+++ .+||...+      ....+..+..  |.                                       ....+.
T Consensus       193 ~el~t~~~~~~~~~~------~~~~~~~i~~--~~---------------------------------------~~~~p~  225 (263)
T d1sm2a_         193 WEVFSEGKIPYENRS------NSEVVEDIST--GF---------------------------------------RLYKPR  225 (263)
T ss_dssp             HHHHTTSCCTTCSCC------HHHHHHHHHH--TC---------------------------------------CCCCCT
T ss_pred             HHHHHCCCCCCCCCC------HHHHHHHHHh--cC---------------------------------------CCCCcc
Confidence            999995 56664322      1122222111  00                                       112234


Q ss_pred             hcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          433 KDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       433 ~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ..++++.+||.+||+.||.+|||++|+|+|
T Consensus       226 ~~~~~l~~li~~cl~~~p~~Rps~~~il~~  255 (263)
T d1sm2a_         226 LASTHVYQIMNHCWKERPEDRPAFSRLLRQ  255 (263)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ccCHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence            456789999999999999999999999986

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-51  Score=400.05  Aligned_cols=250  Identities=24%  Similarity=0.368  Sum_probs=196.6

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc---ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA---QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~---~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +..++|++.++||+|+||+||+|+..   ..||||+++..   ....+.+.+|+.+|+++      +|||||++++++..
T Consensus         5 i~~~~~~~~~~lG~G~fg~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~~~~~~~~   75 (276)
T d1uwha_           5 IPDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT------RHVNILLFMGYSTA   75 (276)
T ss_dssp             CCTTCCCCCSEEEECSSCEEEEEESS---SEEEEEECCCSSCCTTHHHHHHHHHHHHTTC------CCTTBCCEEEEECS
T ss_pred             cccccEEEEEEEeeCCCcEEEEEEEC---CEEEEEEEEcccCCHHHHHHHHHHHHHHHhC------CCCCEeeeeEEEec
Confidence            45678999999999999999999743   35999998754   23356788999999998      78999999997642


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCC
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPR  194 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~  194 (530)
                           ..++|||||| +++|.+++.... ..+++..+..|+.||+.||+|||++ |||||||||+||||+.         
T Consensus        76 -----~~~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~-~ivHrDlKp~NiLl~~---------  139 (276)
T d1uwha_          76 -----PQLAIVTQWCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQGMDYLHAK-SIIHRDLKSNNIFLHE---------  139 (276)
T ss_dssp             -----SSCEEEEECCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEET---------
T ss_pred             -----cEEEEEEecCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHhcC-CEeccccCHHHEEEcC---------
Confidence                 4589999999 899999986433 4599999999999999999999997 9999999999999965         


Q ss_pred             CCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 045988          195 KSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKN  274 (530)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (530)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (276)
T d1uwha_         140 --------------------------------------------------------------------------------  139 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCCCCCCccCChhhcCC---CCCCcchh
Q 045988          275 EATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDIQTRQYRCPEVLLGS---KYSTPADL  346 (530)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~gt~~y~aPE~l~~~---~~~~~~Di  346 (530)
                                                 ++.+||+|||+|.....     ......||+.|+|||++.+.   .|+.++||
T Consensus       140 ---------------------------~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDi  192 (276)
T d1uwha_         140 ---------------------------DLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDV  192 (276)
T ss_dssp             ---------------------------TSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHH
T ss_pred             ---------------------------CCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhh
Confidence                                       56799999999965432     23456799999999999743   58999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          347 WSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       347 WSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      |||||+||||++|+.||.+.+      ....+..+....-..|.                                    
T Consensus       193 wS~Gv~l~el~tg~~Pf~~~~------~~~~~~~~~~~~~~~p~------------------------------------  230 (276)
T d1uwha_         193 YAFGIVLYELMTGQLPYSNIN------NRDQIIFMVGRGYLSPD------------------------------------  230 (276)
T ss_dssp             HHHHHHHHHHHHSSCTTTTCC------CHHHHHHHHHHTSCCCC------------------------------------
T ss_pred             hhhHHHHHHHHHCCCCCCCCC------hHHHHHHHHhcCCCCCc------------------------------------
Confidence            999999999999999996543      23333322221111100                                    


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ....+..+++++.+||.+||..||.+|||+.|+++|
T Consensus       231 ~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~  266 (276)
T d1uwha_         231 LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS  266 (276)
T ss_dssp             GGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             chhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            012334567889999999999999999999999986

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-50  Score=406.71  Aligned_cols=252  Identities=22%  Similarity=0.321  Sum_probs=202.8

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCC-----eEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTS-----HYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~-----~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..++|++.++||+|+||+||+|++..++     ..||+|++...  ......+.+|+.+|+++.     +|||||++++
T Consensus        34 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~HpnIv~l~~  108 (325)
T d1rjba_          34 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG-----SHENIVNLLG  108 (325)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHC-----CCTTBCCEEE
T ss_pred             CCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhc-----CCCcEeEEEE
Confidence            34578999999999999999999986554     47999987643  334567889999999984     6899999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc---------------------CCCCHHHHHHHHHHHHHHHHHHHhhC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY---------------------RGVPLHMVKEICFHILVGLDHLHREL  169 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~---------------------~~l~~~~~~~i~~qll~aL~~LH~~~  169 (530)
                      ++.    ....+||||||| +|+|.+++.....                     ..+++..++.|+.||+.||+|||++ 
T Consensus       109 ~~~----~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~-  183 (325)
T d1rjba_         109 ACT----LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK-  183 (325)
T ss_dssp             EEC----SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             EEe----eCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC-
Confidence            998    446899999999 9999999975432                     2488999999999999999999997 


Q ss_pred             CceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCC
Q 045988          170 SIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSP  249 (530)
Q Consensus       170 gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (530)
                      |||||||||+|||++.                                                                
T Consensus       184 ~IiHRDlKp~Nill~~----------------------------------------------------------------  199 (325)
T d1rjba_         184 SCVHRDLAARNVLVTH----------------------------------------------------------------  199 (325)
T ss_dssp             TEEETTCSGGGEEEET----------------------------------------------------------------
T ss_pred             CeeeccCchhcccccc----------------------------------------------------------------
Confidence            9999999999999965                                                                


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCC
Q 045988          250 DHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDI  324 (530)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~  324 (530)
                                                                          ++.+||+|||+|+.....     .....
T Consensus       200 ----------------------------------------------------~~~~Kl~DFGla~~~~~~~~~~~~~~~~  227 (325)
T d1rjba_         200 ----------------------------------------------------GKVVKICDFGLARDIMSDSNYVVRGNAR  227 (325)
T ss_dssp             ----------------------------------------------------TTEEEECCCGGGSCGGGCTTSEEETTEE
T ss_pred             ----------------------------------------------------CCeEEEeeccccccccCCCceeeecccc
Confidence                                                                567999999999764332     23456


Q ss_pred             CCCCccCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccc
Q 045988          325 QTRQYRCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF  403 (530)
Q Consensus       325 gt~~y~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  403 (530)
                      ||+.|+|||++.+..|+.++|||||||++|||++ |.+||.+.+      ....+..++.. +                 
T Consensus       228 gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~------~~~~~~~~~~~-~-----------------  283 (325)
T d1rjba_         228 LPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP------VDANFYKLIQN-G-----------------  283 (325)
T ss_dssp             ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC------CSHHHHHHHHT-T-----------------
T ss_pred             CCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCC------HHHHHHHHHhc-C-----------------
Confidence            7999999999999999999999999999999997 899997543      12222222110 0                 


Q ss_pred             cccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          404 NRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                            ..+..+...++++.+||.+||+.||.+|||++||++|
T Consensus       284 ----------------------~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  320 (325)
T d1rjba_         284 ----------------------FKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF  320 (325)
T ss_dssp             ----------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------------------CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                  0112344567899999999999999999999999986

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-50  Score=396.48  Aligned_cols=256  Identities=23%  Similarity=0.366  Sum_probs=205.0

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +..++|++.+.||+|+||+||+|+++.+ +.||||+++......+.+.+|+.+|+++      +|||||++++++..   
T Consensus        14 i~~~~~~i~~~iG~G~fg~Vy~~~~~~~-~~vAiK~l~~~~~~~~~~~~E~~~l~~l------~h~nIv~~~g~~~~---   83 (285)
T d1fmka3          14 IPRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMSPEAFLQEAQVMKKL------RHEKLVQLYAVVSE---   83 (285)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTT-EEEEEEECCTTSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS---
T ss_pred             cCHHHEEEeeEEeeCCCeEEEEEEECCC-CEEEEEEECcccCCHHHHHHHHHHHHhc------ccCCEeEEEEEEec---
Confidence            4467899999999999999999998655 5699999988777778899999999999      78889999998853   


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                        +.+++||||| +|+|..++.......+++.++..|+.||+.||+|||++ ||+||||||+||||+.            
T Consensus        84 --~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~-~ivH~DlKp~NIll~~------------  148 (285)
T d1fmka3          84 --EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILVGE------------  148 (285)
T ss_dssp             --SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECG------------
T ss_pred             --CCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh-heecccccceEEEECC------------
Confidence              3478999999 88999888766656699999999999999999999997 9999999999999965            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (285)
T d1fmka3         149 --------------------------------------------------------------------------------  148 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACIC  353 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il  353 (530)
                                              ++.+||+|||+|+.....    .....||+.|+|||++....++.++|||||||++
T Consensus       149 ------------------------~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil  204 (285)
T d1fmka3         149 ------------------------NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILL  204 (285)
T ss_dssp             ------------------------GGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             ------------------------CCcEEEcccchhhhccCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHH
Confidence                                    567999999999754322    3445789999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChh
Q 045988          354 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEK  433 (530)
Q Consensus       354 ~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (530)
                      |||++|..||....     .....+..+..  +                                       .....+..
T Consensus       205 ~el~t~~~p~~~~~-----~~~~~~~~i~~--~---------------------------------------~~~~~~~~  238 (285)
T d1fmka3         205 TELTTKGRVPYPGM-----VNREVLDQVER--G---------------------------------------YRMPCPPE  238 (285)
T ss_dssp             HHHHTTTCCSSTTC-----CHHHHHHHHHT--T---------------------------------------CCCCCCTT
T ss_pred             HHHHhCCCCCCCCC-----CHHHHHHHHHh--c---------------------------------------CCCCCCcc
Confidence            99999655543211     01222222110  0                                       01123455


Q ss_pred             cHHHHHHHHhhccCcCCCCCcCHHHHhc--CCCCCCCC
Q 045988          434 DANDMADFLVPILDFVPEKRPTAAQCLT--HPWINVGP  469 (530)
Q Consensus       434 ~~~~~~dLl~~mL~~dP~~Rpta~elL~--hp~f~~~~  469 (530)
                      +++++.+||.+||+.||++|||+++|++  |+||+...
T Consensus       239 ~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~  276 (285)
T d1fmka3         239 CPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  276 (285)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred             cCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCCC
Confidence            6788999999999999999999999998  89998643

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-50  Score=392.32  Aligned_cols=246  Identities=19%  Similarity=0.332  Sum_probs=204.7

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      .++|++.++||+|+||+||+|+++ +++.||||++++.....+.+.+|+.+++++      +|||||++++++..    .
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l------~HpnIv~~~g~~~~----~   71 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMNL------SHEKLVQLYGVCTK----Q   71 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEET-TTEEEEEEEEESSSSCHHHHHHHHHHHHTC------CCTTBCCEEEEECC----S
T ss_pred             hHHCEEeEEEecCCCeEEEEEEEC-CCCEEEEEEECcCcCCHHHHHHHHHHHHhc------CCCceeeEEEEEee----C
Confidence            468999999999999999999974 788999999998777788899999999999      78899999999984    4


Q ss_pred             cEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPP  199 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~  199 (530)
                      ..+++||||+ +|+|..++.... ..+++..+..|+.||+.||+|||++ ||+||||||+|||++.              
T Consensus        72 ~~~~iv~Ey~~~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~~LH~~-~iiH~dlk~~Nill~~--------------  135 (258)
T d1k2pa_          72 RPIFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESK-QFLHRDLAARNCLVND--------------  135 (258)
T ss_dssp             SSEEEEEECCTTEEHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHT-TBCCSCCSGGGEEECT--------------
T ss_pred             CceEEEEEccCCCcHHHhhhccc-cCCcHHHHHHHHHHHHHHHHHHhhc-CcccccccceeEEEcC--------------
Confidence            6799999999 788888876433 4589999999999999999999997 9999999999999965              


Q ss_pred             CccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccc
Q 045988          200 PMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSN  279 (530)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (530)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (258)
T d1k2pa_         136 --------------------------------------------------------------------------------  135 (258)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc----cCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHH
Q 045988          280 EGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ----FTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFE  355 (530)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~e  355 (530)
                                            +..+||+|||+|+.....    .....||+.|+|||++.+..|+.++|||||||++||
T Consensus       136 ----------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~e  193 (258)
T d1k2pa_         136 ----------------------QGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWE  193 (258)
T ss_dssp             ----------------------TCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             ----------------------CCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHh
Confidence                                  467999999999754322    334568999999999999999999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhc
Q 045988          356 LAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKD  434 (530)
Q Consensus       356 llt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (530)
                      |+| |+.||.+.+      ..+....+..  |                                       .....+...
T Consensus       194 l~t~g~~Pf~~~~------~~~~~~~i~~--~---------------------------------------~~~~~p~~~  226 (258)
T d1k2pa_         194 IYSLGKMPYERFT------NSETAEHIAQ--G---------------------------------------LRLYRPHLA  226 (258)
T ss_dssp             HHTTSCCTTTTSC------HHHHHHHHHT--T---------------------------------------CCCCCCTTC
T ss_pred             HHhcCCCCCCCCC------HHHHHHHHHh--C---------------------------------------CCCCCcccc
Confidence            998 899996543      2222221111  0                                       011223455


Q ss_pred             HHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          435 ANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       435 ~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ++.+.+||.+||+.||.+|||+.|+|+|
T Consensus       227 ~~~l~~li~~cl~~dP~~RPt~~eil~~  254 (258)
T d1k2pa_         227 SEKVYTIMYSCWHEKADERPTFKILLSN  254 (258)
T ss_dssp             CHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             cHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence            6789999999999999999999999987

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-50  Score=402.40  Aligned_cols=256  Identities=25%  Similarity=0.371  Sum_probs=207.5

Q ss_pred             CCCEEEEEEeccccceEEEEEEeC---CCCeEEEEEEecccc-----cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDT---QTSHYVALKVQKSAQ-----HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~---~~~~~vAiK~~~~~~-----~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      .++|+++++||+|+||+||+|++.   .+|+.||||++++..     ...+.+.+|+++|+++.     +||||++++++
T Consensus        23 l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~-----h~pnIv~~~~~   97 (322)
T d1vzoa_          23 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-----QSPFLVTLHYA   97 (322)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHH-----TCTTBCCEEEE
T ss_pred             hhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhcc-----CCCeEEEeeee
Confidence            368999999999999999999874   468999999986532     23567789999999996     35789999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +.+    ...+++||||| +++|.+++....  .+++..++.++.||+.||+|||++ |||||||||+|||++.      
T Consensus        98 ~~~----~~~~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~lH~~-~ivHrDiKp~Nill~~------  164 (322)
T d1vzoa_          98 FQT----ETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKL-GIIYRDIKLENILLDS------  164 (322)
T ss_dssp             EEE----TTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECT------
T ss_pred             ecc----CCceeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHhhcC-CEEeccCCccceeecC------
Confidence            984    47899999999 899999987544  488999999999999999999997 9999999999999965      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (322)
T d1vzoa_         165 --------------------------------------------------------------------------------  164 (322)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCC--CCCcch
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSK--YSTPAD  345 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~--~~~~~D  345 (530)
                                                    ++.++|+|||+|.....    ......|++.|+|||.+.+..  ++.++|
T Consensus       165 ------------------------------~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksD  214 (322)
T d1vzoa_         165 ------------------------------NGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVD  214 (322)
T ss_dssp             ------------------------------TSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHH
T ss_pred             ------------------------------CCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhh
Confidence                                          46799999999965322    234457899999999997653  688999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||+||+|++|..||.+.+...   ....   +..                                      ....
T Consensus       215 IWSlG~iLyelltG~~PF~~~~~~~---~~~~---i~~--------------------------------------~~~~  250 (322)
T d1vzoa_         215 WWSLGVLMYELLTGASPFTVDGEKN---SQAE---ISR--------------------------------------RILK  250 (322)
T ss_dssp             HHHHHHHHHHHHHSSCTTSCTTSCC---CHHH---HHH--------------------------------------HHHH
T ss_pred             hHHHHHHHHHHHhCCCCCCCCCHHH---HHHH---HHH--------------------------------------hccc
Confidence            9999999999999999997654322   1111   111                                      1111


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCc-----CHHHHhcCCCCCCC
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRP-----TAAQCLTHPWINVG  468 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rp-----ta~elL~hp~f~~~  468 (530)
                      ....++...++++.+||.+||++||.+||     |++|+|+||||+.-
T Consensus       251 ~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i  298 (322)
T d1vzoa_         251 SEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKI  298 (322)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTC
T ss_pred             CCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCC
Confidence            12234556788999999999999999999     58999999999863

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-50  Score=397.36  Aligned_cols=252  Identities=21%  Similarity=0.348  Sum_probs=203.3

Q ss_pred             eCCCEEEEEE-eccccceEEEEEEeCC--CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           40 KNGRYVVQSK-LGWGHFSTVWLAWDTQ--TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        40 ~~~~y~i~~~-LG~G~fg~Vy~a~~~~--~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +.++|.+.+. ||+|+||+||+|.++.  ++..||||+++...  ...+.+.+|+++|+++      +|||||++++++.
T Consensus         6 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~g~~~   79 (285)
T d1u59a_           6 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL------DNPYIVRLIGVCQ   79 (285)
T ss_dssp             CGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             cccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhC------CCCCEeeEeeeec
Confidence            4567999884 9999999999998754  45689999987543  3356788999999999      7899999999986


Q ss_pred             ecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCC
Q 045988          115 HSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDP  193 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~  193 (530)
                      .     +.+||||||| +++|.+++... ...+++..+..|+.||+.||+|||++ |||||||||+||||+.        
T Consensus        80 ~-----~~~~lvmE~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~gL~ylH~~-~iiHrDlKp~Nill~~--------  144 (285)
T d1u59a_          80 A-----EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEK-NFVHRDLAARNVLLVN--------  144 (285)
T ss_dssp             S-----SSEEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEEE--------
T ss_pred             c-----CeEEEEEEeCCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCcCchhheeecc--------
Confidence            3     3589999999 88999987532 34599999999999999999999997 9999999999999976        


Q ss_pred             CCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 045988          194 RKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIK  273 (530)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (530)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (285)
T d1u59a_         145 --------------------------------------------------------------------------------  144 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhH
Q 045988          274 NEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLW  347 (530)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiW  347 (530)
                                                  ++.+||+|||+|+.....      .....||+.|+|||++.+..|+.++|||
T Consensus       145 ----------------------------~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVw  196 (285)
T d1u59a_         145 ----------------------------RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVW  196 (285)
T ss_dssp             ----------------------------TTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHH
T ss_pred             ----------------------------CCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhh
Confidence                                        567999999999754321      2345689999999999988999999999


Q ss_pred             HHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhh
Q 045988          348 SFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIE  426 (530)
Q Consensus       348 SlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (530)
                      ||||++|||++ |.+||.+.+      ..+.+..+..  |.                                       
T Consensus       197 S~Gv~l~E~lt~G~~Pf~~~~------~~~~~~~i~~--~~---------------------------------------  229 (285)
T d1u59a_         197 SYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--GK---------------------------------------  229 (285)
T ss_dssp             HHHHHHHHHHTTSCCTTTTCC------THHHHHHHHT--TC---------------------------------------
T ss_pred             cchHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CC---------------------------------------
Confidence            99999999998 999996543      2222222210  10                                       


Q ss_pred             hccCChhcHHHHHHHHhhccCcCCCCCcCHHHH---hcCCCCCC
Q 045988          427 KYDFSEKDANDMADFLVPILDFVPEKRPTAAQC---LTHPWINV  467 (530)
Q Consensus       427 ~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~el---L~hp~f~~  467 (530)
                      ....+..+++++.+||.+||..||++|||+.+|   |+|+|++.
T Consensus       230 ~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~~  273 (285)
T d1u59a_         230 RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  273 (285)
T ss_dssp             CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence            113445667899999999999999999999888   67888853

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-50  Score=398.21  Aligned_cols=249  Identities=18%  Similarity=0.306  Sum_probs=192.0

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCCe---EEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTSH---YVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~---~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      +..++|++.++||+|+||+||+|+++.+++   .||||.+....  ...+.+.+|+++|++|      +|||||++++++
T Consensus        23 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~l~g~~   96 (299)
T d1jpaa_          23 IDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF------DHPNVIHLEGVV   96 (299)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEE
T ss_pred             hChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC------CCCCCccEEEEE
Confidence            445789999999999999999999887654   68999876542  3345788999999998      789999999999


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      .    ....+||||||| +++|.+++... ...+++.++..|+.||+.||+|||++ |||||||||+||||+.       
T Consensus        97 ~----~~~~~~iv~Ey~~~g~L~~~~~~~-~~~l~~~~~~~i~~qia~gl~yLH~~-~iiHrDlKp~NILl~~-------  163 (299)
T d1jpaa_          97 T----KSTPVMIITEFMENGSLDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLADM-NYVHRDLAARNILVNS-------  163 (299)
T ss_dssp             C----SSSSCEEEEECCTTEEHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT-------
T ss_pred             e----eCCEEEEEEEecCCCcceeeeccc-cCCCCHHHHHHHHHHHHHHHHHHhhC-CCccCccccceEEECC-------
Confidence            8    446799999999 88999887643 34589999999999999999999997 9999999999999965       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (299)
T d1jpaa_         164 --------------------------------------------------------------------------------  163 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--------cCCCCCCCCccCChhhcCCCCCCcc
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--------FTNDIQTRQYRCPEVLLGSKYSTPA  344 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--------~~~~~gt~~y~aPE~l~~~~~~~~~  344 (530)
                                                   ++.+||+|||+|+.....        .....||+.|+|||++.+..|+.++
T Consensus       164 -----------------------------~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~s  214 (299)
T d1jpaa_         164 -----------------------------NLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSAS  214 (299)
T ss_dssp             -----------------------------TCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHH
T ss_pred             -----------------------------CCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCccc
Confidence                                         567999999999754322        1224578999999999999999999


Q ss_pred             hhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhh
Q 045988          345 DLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       345 DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      |||||||++|||+| |.+||.+.+      ..+.+..+..  +                                     
T Consensus       215 DvwS~Gvvl~el~t~g~~Pf~~~~------~~~~~~~i~~--~-------------------------------------  249 (299)
T d1jpaa_         215 DVWSYGIVMWEVMSYGERPYWDMT------NQDVINAIEQ--D-------------------------------------  249 (299)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHT--T-------------------------------------
T ss_pred             ccccchHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C-------------------------------------
Confidence            99999999999998 899996443      1222221110  0                                     


Q ss_pred             hhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       424 ~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                        .....+...++.+.+||.+||+.||.+|||+.|++++
T Consensus       250 --~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~  286 (299)
T d1jpaa_         250 --YRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNT  286 (299)
T ss_dssp             --CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             --CCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence              0112334567889999999999999999999998875

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-50  Score=393.66  Aligned_cols=246  Identities=22%  Similarity=0.361  Sum_probs=193.9

Q ss_pred             EEEE-EEeccccceEEEEEEeC--CCCeEEEEEEecccc---cchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           44 YVVQ-SKLGWGHFSTVWLAWDT--QTSHYVALKVQKSAQ---HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        44 y~i~-~~LG~G~fg~Vy~a~~~--~~~~~vAiK~~~~~~---~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      +.+. ++||+|+||+||+|.+.  .+++.||||+++...   ...+.+.+|+++|++|      +|||||++++++..  
T Consensus         8 ~~le~k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~g~~~~--   79 (277)
T d1xbba_           8 LTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL------DNPYIVRMIGICEA--   79 (277)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTC------CCTTBCCEEEEEES--
T ss_pred             CeecCCCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhC------CCCCCceEEEEecc--
Confidence            4443 47999999999999754  456899999986542   2346788999999999      78999999999863  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                         +..+|||||| +|+|.+++..  ...+++..+..|+.||+.||+|||++ |||||||||+||||+.           
T Consensus        80 ---~~~~lvmE~~~~g~L~~~l~~--~~~l~~~~~~~i~~qi~~gl~ylH~~-~iiHrDlKp~Nill~~-----------  142 (277)
T d1xbba_          80 ---ESWMLVMEMAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEES-NFVHRDLAARNVLLVT-----------  142 (277)
T ss_dssp             ---SSEEEEEECCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE-----------
T ss_pred             ---CCEEEEEEcCCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhHHhC-CcccCCCcchhhcccc-----------
Confidence               3478999999 8999999874  34599999999999999999999997 9999999999999976           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (277)
T d1xbba_         143 --------------------------------------------------------------------------------  142 (277)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                               ++.+||+|||+|+.....      .....||+.|+|||++.+..|+.++||||||
T Consensus       143 -------------------------~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~G  197 (277)
T d1xbba_         143 -------------------------QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFG  197 (277)
T ss_dssp             -------------------------TTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHH
T ss_pred             -------------------------cCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccch
Confidence                                     567999999999753321      2345789999999999998999999999999


Q ss_pred             HHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          351 CICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       351 ~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      |++|||++ |.+||.+.+      ..+....+..  |                                       ....
T Consensus       198 v~l~ellt~g~~Pf~~~~------~~~~~~~i~~--~---------------------------------------~~~~  230 (277)
T d1xbba_         198 VLMWEAFSYGQKPYRGMK------GSEVTAMLEK--G---------------------------------------ERMG  230 (277)
T ss_dssp             HHHHHHHTTTCCSSTTCC------HHHHHHHHHT--T---------------------------------------CCCC
T ss_pred             hhhhHHhhCCCCCCCCCC------HHHHHHHHHc--C---------------------------------------CCCC
Confidence            99999998 899996433      1111111110  0                                       0123


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHH---hcCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQC---LTHPWIN  466 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~el---L~hp~f~  466 (530)
                      .+..+++++.+||.+||+.||.+|||++++   |+|+|+.
T Consensus       231 ~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  270 (277)
T d1xbba_         231 CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  270 (277)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHHhh
Confidence            345567899999999999999999999998   5676653

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-49  Score=392.60  Aligned_cols=249  Identities=21%  Similarity=0.310  Sum_probs=197.3

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCe----EEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSH----YVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~----~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      .++..+|+++++||+|+||+||+|.+..+|+    .||+|.++..  ....+.+.+|+.+|+++      +|||||++++
T Consensus         5 ~~k~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~l~g   78 (317)
T d1xkka_           5 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------DNPHVCRLLG   78 (317)
T ss_dssp             ECCTTTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHC------CCTTBCCEEE
T ss_pred             cCCHHHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhC------CCCCEeeEEE
Confidence            4566789999999999999999999988875    5788877543  23456789999999999      7889999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ++..     ...++||||+ +++|.+++... ...+++..++.|+.||+.||+|||++ |||||||||+||||+.     
T Consensus        79 ~~~~-----~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~yLH~~-~iiHrDlKp~NIll~~-----  146 (317)
T d1xkka_          79 ICLT-----STVQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLVKT-----  146 (317)
T ss_dssp             EEES-----SSEEEEEECCTTCBHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEE-----
T ss_pred             EEec-----CCeeEEEEeccCCccccccccc-ccCCCHHHHHHHHHHHHHHHHHHHHc-CcccCcchhhcceeCC-----
Confidence            9974     2467777888 89999887653 34599999999999999999999997 9999999999999976     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (317)
T d1xkka_         147 --------------------------------------------------------------------------------  146 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcCCCCCCcch
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                     ++.+||+|||+|+.....     .....||+.|+|||++.+..|+.++|
T Consensus       147 -------------------------------~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sD  195 (317)
T d1xkka_         147 -------------------------------PQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSD  195 (317)
T ss_dssp             -------------------------------TTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHH
T ss_pred             -------------------------------CCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhh
Confidence                                           567999999999764322     23346899999999999999999999


Q ss_pred             hHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhh
Q 045988          346 LWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVL  424 (530)
Q Consensus       346 iWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (530)
                      ||||||++|||+| |.+||.+.+      .......+. . |                                      
T Consensus       196 vwS~Gvil~el~t~g~~p~~~~~------~~~~~~~i~-~-~--------------------------------------  229 (317)
T d1xkka_         196 VWSYGVTVWELMTFGSKPYDGIP------ASEISSILE-K-G--------------------------------------  229 (317)
T ss_dssp             HHHHHHHHHHHHTTSCCTTTTSC------GGGHHHHHH-H-T--------------------------------------
T ss_pred             hhhHHHHHHHHHHCCCCCCCCCC------HHHHHHHHH-c-C--------------------------------------
Confidence            9999999999998 899996543      111111111 1 0                                      


Q ss_pred             hhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          425 IEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       425 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                       .....+...++.+.+||.+||+.||.+|||+.|++.|
T Consensus       230 -~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  266 (317)
T d1xkka_         230 -ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  266 (317)
T ss_dssp             -CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -CCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHH
Confidence             0122345567889999999999999999999999988

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-49  Score=387.17  Aligned_cols=248  Identities=19%  Similarity=0.316  Sum_probs=193.2

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCC---CeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEeccee
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQT---SHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHF  113 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~---~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~  113 (530)
                      +..++|++.+.||+|+||+||+|++..+   +..||||+++...  ...+.+.+|+.+|+++      +|||||++++++
T Consensus         4 i~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~l~~~~   77 (273)
T d1mp8a_           4 IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF------DHPHIVKLIGVI   77 (273)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC------CCTTBCCEEEEE
T ss_pred             cCHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEE
Confidence            3357899999999999999999988654   4679999886532  3356788999999999      789999999998


Q ss_pred             eecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCC
Q 045988          114 KHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKD  192 (530)
Q Consensus       114 ~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~  192 (530)
                      ..     ..+||||||| +++|.+++.. ....+++..++.++.||+.||.|||++ |||||||||+|||++.       
T Consensus        78 ~~-----~~~~iv~E~~~~g~l~~~~~~-~~~~l~~~~~~~~~~qi~~gl~ylH~~-~iiHrDlKp~NIll~~-------  143 (273)
T d1mp8a_          78 TE-----NPVWIIMELCTLGELRSFLQV-RKYSLDLASLILYAYQLSTALAYLESK-RFVHRDIAARNVLVSS-------  143 (273)
T ss_dssp             CS-----SSCEEEEECCTTEEHHHHHHH-TTTTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE-------
T ss_pred             ec-----CeEEEEEEeccCCcHHhhhhc-cCCCCCHHHHHHHHHHHHHHhhhhccc-CeeccccchhheeecC-------
Confidence            63     4689999999 8899887754 334599999999999999999999997 9999999999999976       


Q ss_pred             CCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 045988          193 PRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLI  272 (530)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (273)
T d1mp8a_         144 --------------------------------------------------------------------------------  143 (273)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc----ccCCCCCCCCccCChhhcCCCCCCcchhHH
Q 045988          273 KNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----QFTNDIQTRQYRCPEVLLGSKYSTPADLWS  348 (530)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----~~~~~~gt~~y~aPE~l~~~~~~~~~DiWS  348 (530)
                                                   ++.+||+|||+|+....    ......||+.|+|||++.+..|+.++||||
T Consensus       144 -----------------------------~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwS  194 (273)
T d1mp8a_         144 -----------------------------NDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWM  194 (273)
T ss_dssp             -----------------------------TTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHH
T ss_pred             -----------------------------CCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCCCcccccc
Confidence                                         56799999999976432    233456899999999999999999999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhh
Q 045988          349 FACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEK  427 (530)
Q Consensus       349 lG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (530)
                      |||++|||++ |.+||...+      ..+.+..+..  |                                       ..
T Consensus       195 lGvil~e~lt~g~~P~~~~~------~~~~~~~i~~--~---------------------------------------~~  227 (273)
T d1mp8a_         195 FGVCMWEILMHGVKPFQGVK------NNDVIGRIEN--G---------------------------------------ER  227 (273)
T ss_dssp             HHHHHHHHHTTSCCTTTTCC------GGGHHHHHHT--T---------------------------------------CC
T ss_pred             chHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--C---------------------------------------CC
Confidence            9999999998 899996543      2222222110  0                                       01


Q ss_pred             ccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          428 YDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       428 ~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      ...+..+++.+.+||.+||..||.+|||+.||++|
T Consensus       228 ~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         228 LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            23445677899999999999999999999999976

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-49  Score=389.05  Aligned_cols=253  Identities=24%  Similarity=0.346  Sum_probs=194.3

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      |..++|++.++||+|+||+||+|++..     +++.||||+++...  ...+.+.+|..++.++.     +|+|||.+++
T Consensus        10 i~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~-----~h~~iv~~~~   84 (299)
T d1ywna1          10 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVVNLLG   84 (299)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHC-----CCTTBCCEEE
T ss_pred             ccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhc-----CCCeEEEeee
Confidence            345789999999999999999998654     45899999987543  33456778888888885     6889999998


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDL  176 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDI  176 (530)
                      ++..   .+..+++||||| +++|.+++.....              ..+++..+..|+.||+.||+|||++ |||||||
T Consensus        85 ~~~~---~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~-~ivHrDl  160 (299)
T d1ywna1          85 ACTK---PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDL  160 (299)
T ss_dssp             EECS---TTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT-TCCCSCC
T ss_pred             eecc---CCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC-CCcCCcC
Confidence            8764   346789999999 8999999975432              2488999999999999999999997 9999999


Q ss_pred             CCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCC
Q 045988          177 KPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDA  256 (530)
Q Consensus       177 Kp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (530)
                      ||+||||+.                                                                       
T Consensus       161 Kp~NILl~~-----------------------------------------------------------------------  169 (299)
T d1ywna1         161 AARNILLSE-----------------------------------------------------------------------  169 (299)
T ss_dssp             CGGGEEECG-----------------------------------------------------------------------
T ss_pred             CccceeECC-----------------------------------------------------------------------
Confidence            999999965                                                                       


Q ss_pred             CCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccC
Q 045988          257 EPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRC  331 (530)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~a  331 (530)
                                                                   ++.+||+|||+|+.....     ....+||+.|+|
T Consensus       170 ---------------------------------------------~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~A  204 (299)
T d1ywna1         170 ---------------------------------------------KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA  204 (299)
T ss_dssp             ---------------------------------------------GGCEEECC------CCSCTTSCCTTSCCCGGGGCC
T ss_pred             ---------------------------------------------CCcEEEccCcchhhccccccccccCceeeCccccc
Confidence                                                         567999999999753321     334579999999


Q ss_pred             ChhhcCCCCCCcchhHHHHHHHHHHHhC-CCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccc
Q 045988          332 PEVLLGSKYSTPADLWSFACICFELATG-DVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLR  410 (530)
Q Consensus       332 PE~l~~~~~~~~~DiWSlG~il~elltG-~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  410 (530)
                      ||++.+..|+.++|||||||++|||++| .+||.+..      ....+...+.. |.                       
T Consensus       205 PE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~------~~~~~~~~~~~-~~-----------------------  254 (299)
T d1ywna1         205 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK------IDEEFCRRLKE-GT-----------------------  254 (299)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------CSHHHHHHHHH-TC-----------------------
T ss_pred             hhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCC------HHHHHHHHHhc-CC-----------------------
Confidence            9999999999999999999999999986 56786433      11222221111 00                       


Q ss_pred             cchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          411 HIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                                      .+..+...++++.+||.+||+.||.+|||++|+++|
T Consensus       255 ----------------~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         255 ----------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             ----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------------CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                            112344567889999999999999999999999987

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-49  Score=386.39  Aligned_cols=249  Identities=20%  Similarity=0.282  Sum_probs=196.5

Q ss_pred             EeeCCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecC
Q 045988           38 TFKNGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSG  117 (530)
Q Consensus        38 ~~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~  117 (530)
                      .+..++|+++++||+|+||.||+|+.  .|..||||+++... ..+.+.+|+++|+++      +|||||++++++..  
T Consensus         3 ~i~~~~~~~~~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~~~-~~~~~~~E~~~l~~l------~HpnIv~~~g~~~~--   71 (262)
T d1byga_           3 ALNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA-TAQAFLAEASVMTQL------RHSNLVQLLGVIVE--   71 (262)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC---HHHHHTHHHHTTC------CCTTBCCEEEEECC--
T ss_pred             ccCHHHeEEeEEEecCCCeEEEEEEE--CCeEEEEEEECcHH-HHHHHHHHHHHHHhC------CCCCEeeEEEEEEe--
Confidence            45567899999999999999999986  47899999997654 467789999999998      78999999998864  


Q ss_pred             CCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCC
Q 045988          118 PNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKS  196 (530)
Q Consensus       118 ~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~  196 (530)
                       ....+||||||+ +++|.+++.......+++..+..|+.||+.||+|||++ +||||||||+|||++.           
T Consensus        72 -~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~-~ivH~dlkp~Nil~~~-----------  138 (262)
T d1byga_          72 -EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVSE-----------  138 (262)
T ss_dssp             -C--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECT-----------
T ss_pred             -cCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccC-ceeccccchHhheecC-----------
Confidence             234689999999 99999999765544589999999999999999999997 9999999999999955           


Q ss_pred             CCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 045988          197 GPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEA  276 (530)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (530)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (262)
T d1byga_         139 --------------------------------------------------------------------------------  138 (262)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccccCCCCCCCCccCChhhcCCCCCCcchhHHHHHHHHHH
Q 045988          277 TSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFEL  356 (530)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG~il~el  356 (530)
                                               ++.+||+|||+++..........+|..|+|||++.+..|+.++|||||||++|||
T Consensus       139 -------------------------~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el  193 (262)
T d1byga_         139 -------------------------DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEI  193 (262)
T ss_dssp             -------------------------TSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             -------------------------CCCEeecccccceecCCCCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHH
Confidence                                     5679999999998766666667889999999999988999999999999999999


Q ss_pred             Hh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccCChhcH
Q 045988          357 AT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDA  435 (530)
Q Consensus       357 lt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (530)
                      ++ |.+||...+      ..+....+.+                                         .....++...+
T Consensus       194 ~t~~~~p~~~~~------~~~~~~~i~~-----------------------------------------~~~~~~~~~~~  226 (262)
T d1byga_         194 YSFGRVPYPRIP------LKDVVPRVEK-----------------------------------------GYKMDAPDGCP  226 (262)
T ss_dssp             HTTSCCSCTTSC------GGGHHHHHTT-----------------------------------------TCCCCCCTTCC
T ss_pred             HHCCCCCCCCCC------HHHHHHHHHc-----------------------------------------CCCCCCCccCC
Confidence            98 788886433      1111111100                                         01123455667


Q ss_pred             HHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          436 NDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       436 ~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      +.+.+||.+||+.||.+|||+.+++++
T Consensus       227 ~~~~~li~~cl~~dP~~Rps~~~l~~~  253 (262)
T d1byga_         227 PAVYEVMKNCWHLDAAMRPSFLQLREQ  253 (262)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            899999999999999999999999874

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-48  Score=378.47  Aligned_cols=249  Identities=18%  Similarity=0.266  Sum_probs=191.6

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCC----eEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTS----HYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~----~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      +....|++.++||+|+||+||+|..+.++    ..||||+++...  .....+.+|+++|++|      +|||||+++++
T Consensus         4 i~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l------~H~nIv~~~g~   77 (283)
T d1mqba_           4 IHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF------SHHNIIRLEGV   77 (283)
T ss_dssp             CCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTC------CCTTBCCEEEE
T ss_pred             CCHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhc------CCCCEeeeeEE
Confidence            44568999999999999999999877654    579999886543  2345678999999999      78899999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSK  191 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~  191 (530)
                      +.    .....++||||| ++++.+++.. ....+++..+..++.||+.||+|||++ |||||||||+||||+.      
T Consensus        78 ~~----~~~~~~~v~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~i~~gl~~lH~~-~iiHrDlKp~NILl~~------  145 (283)
T d1mqba_          78 IS----KYKPMMIITEYMENGALDKFLRE-KDGEFSVLQLVGMLRGIAAGMKYLANM-NYVHRDLAARNILVNS------  145 (283)
T ss_dssp             EC----SSSSEEEEEECCTTEEHHHHHHH-TTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECT------
T ss_pred             Ee----cCCceEEEEEecccCcchhhhhc-ccccccHHHHHHHHHHHHHhhhhcccc-ccccCccccceEEECC------
Confidence            98    446799999999 7778777654 334599999999999999999999997 9999999999999965      


Q ss_pred             CCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 045988          192 DPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSL  271 (530)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (530)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (283)
T d1mqba_         146 --------------------------------------------------------------------------------  145 (283)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcch
Q 045988          272 IKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPAD  345 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~D  345 (530)
                                                    ++.+||+|||+|+.....      .....||+.|+|||++.+..|+.++|
T Consensus       146 ------------------------------~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sD  195 (283)
T d1mqba_         146 ------------------------------NLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASD  195 (283)
T ss_dssp             ------------------------------TCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHH
T ss_pred             ------------------------------CCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCccc
Confidence                                          567999999999754321      22346899999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhh
Q 045988          346 LWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLI  425 (530)
Q Consensus       346 iWSlG~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      ||||||++|||++|..||....     .....+..+..  |                                       
T Consensus       196 I~S~Gvil~el~t~~~~~~~~~-----~~~~~~~~i~~--~---------------------------------------  229 (283)
T d1mqba_         196 VWSFGIVMWEVMTYGERPYWEL-----SNHEVMKAIND--G---------------------------------------  229 (283)
T ss_dssp             HHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHT--T---------------------------------------
T ss_pred             ccccHHHHHHHHhCCCCccccC-----CHHHHHHHHhc--c---------------------------------------
Confidence            9999999999999665553221     01111111110  0                                       


Q ss_pred             hhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          426 EKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       426 ~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      .....+...+..+.+||.+||+.||.+|||+.||++
T Consensus       230 ~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         230 FRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHH
Confidence            011234456788999999999999999999999987

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5e-48  Score=383.06  Aligned_cols=262  Identities=21%  Similarity=0.248  Sum_probs=200.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      +++|+++++||+|+||+||+|++..+|+.||||++..... ...+.+|+++++.+.|     |++|+.+..++.    .+
T Consensus         6 g~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~i~~~l~~-----~~~i~~~~~~~~----~~   75 (299)
T d1ckia_           6 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQG-----GVGIPTIRWCGA----EG   75 (299)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT-SCCHHHHHHHHHHSTT-----STTCCCEEEEEE----ET
T ss_pred             CCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc-CHHHHHHHHHHHHccC-----CCcccEEEEEEe----cC
Confidence            4689999999999999999999999999999998876543 4567889999999953     334555555555    44


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ...++||||++++|...+... ...+++..+..++.||+.||+|||++ |||||||||+|||+....             
T Consensus        76 ~~~~ivme~~~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~iiHrDiKp~NIl~~~~~-------------  140 (299)
T d1ckia_          76 DYNVMVMELLGPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLMGLGK-------------  140 (299)
T ss_dssp             TEEEEEEECCCCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECCGG-------------
T ss_pred             CEEEEEEEEcCCchhhhhhhc-cCCCcHHHHHHHHHHHHHHHHHHHHC-CeeeccCCHhhccccccC-------------
Confidence            789999999999988877643 34599999999999999999999997 999999999999985411             


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (299)
T d1ckia_         141 --------------------------------------------------------------------------------  140 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc----------ccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----------QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----------~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                          ....++|+|||+|+....          .....+||+.|+|||++.+..|+.++||||||
T Consensus       141 --------------------~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  200 (299)
T d1ckia_         141 --------------------KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLG  200 (299)
T ss_dssp             --------------------GTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHH
T ss_pred             --------------------CCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecC
Confidence                                034699999999976432          12455799999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHH-HhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMME-LLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~-~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      |++|||++|.+||...........   ...... .+..+                                      ...
T Consensus       201 ~~l~el~tg~~P~~~~~~~~~~~~---~~~~~~~~~~~~--------------------------------------~~~  239 (299)
T d1ckia_         201 YVLMYFNLGSLPWQGLKAATKRQK---YERISEKKMSTP--------------------------------------IEV  239 (299)
T ss_dssp             HHHHHHHHSSCTTCCCC----------HHHHHHHHHHSC--------------------------------------HHH
T ss_pred             HHHHHHHhCCCcccccchHHHHHH---HHHhhcccCCCC--------------------------------------hhH
Confidence            999999999999976543221111   111000 00000                                      001


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHH---HHhcCCCCCCC
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAA---QCLTHPWINVG  468 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~---elL~hp~f~~~  468 (530)
                      .....++++.+||.+||..||.+||++.   ++|+|+|.+.+
T Consensus       240 ~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~~~  281 (299)
T d1ckia_         240 LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  281 (299)
T ss_dssp             HTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             hccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHHHcC
Confidence            1234568899999999999999999976   55788877544

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-48  Score=375.99  Aligned_cols=248  Identities=21%  Similarity=0.259  Sum_probs=190.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCC-C--eEEEEEEeccc----ccchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQT-S--HYVALKVQKSA----QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~-~--~~vAiK~~~~~----~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..++|++++.||+|+||+||+|+...+ +  ..||||++++.    ....+.+.+|+.+|+++      +|||||++++
T Consensus         5 i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l------~H~nIv~~~g   78 (273)
T d1u46a_           5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL------DHRNLIRLYG   78 (273)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHC------CCTTBCCEEE
T ss_pred             EchHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhC------CCCCEEEEEE
Confidence            4457899999999999999999986433 3  47999988753    23346788999999999      7899999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCC
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ++..     ...++||||| +++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+||||+.     
T Consensus        79 ~~~~-----~~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~-~iiHrDikp~NIll~~-----  146 (273)
T d1u46a_          79 VVLT-----PPMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESK-RFIHRDLAARNLLLAT-----  146 (273)
T ss_dssp             EECS-----SSCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEEE-----
T ss_pred             EEee-----cchheeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHHHHHhhhC-CEeeeeecHHHhcccc-----
Confidence            9973     3578999999 889988776543 3499999999999999999999997 9999999999999976     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (273)
T d1u46a_         147 --------------------------------------------------------------------------------  146 (273)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc------cCCCCCCCCccCChhhcCCCCCCcc
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ------FTNDIQTRQYRCPEVLLGSKYSTPA  344 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~  344 (530)
                                                     +..+||+|||++......      .....||..|+|||++.+..|+.++
T Consensus       147 -------------------------------~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~  195 (273)
T d1u46a_         147 -------------------------------RDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHAS  195 (273)
T ss_dssp             -------------------------------TTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHH
T ss_pred             -------------------------------ccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcch
Confidence                                           567999999999764322      2344678899999999999999999


Q ss_pred             hhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhh
Q 045988          345 DLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKV  423 (530)
Q Consensus       345 DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (530)
                      |||||||++|||++ |.+||.+.+      ..+.+..+.+ -+                                     
T Consensus       196 Di~S~Gvil~emlt~G~~Pf~~~~------~~~~~~~i~~-~~-------------------------------------  231 (273)
T d1u46a_         196 DTWMFGVTLWEMFTYGQEPWIGLN------GSQILHKIDK-EG-------------------------------------  231 (273)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHT-SC-------------------------------------
T ss_pred             hhhhhHHHHHHHHhCCCCCCCCcC------HHHHHHHHHh-CC-------------------------------------
Confidence            99999999999998 899996443      2222222211 00                                     


Q ss_pred             hhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          424 LIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       424 ~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                        ..+..+...++.+.+||.+||+.||.+|||+.||++
T Consensus       232 --~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~  267 (273)
T d1u46a_         232 --ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRD  267 (273)
T ss_dssp             --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --CCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence              011233456788999999999999999999999874

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-47  Score=378.06  Aligned_cols=250  Identities=25%  Similarity=0.360  Sum_probs=197.3

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCCCC-------eEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEe
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQTS-------HYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKL  109 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~~~-------~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~  109 (530)
                      +..++|+++++||+|+||.||+|++..++       ..||||+++....  ....+.+|..++.++.     +|||||++
T Consensus        10 i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~-----~HpnIv~~   84 (299)
T d1fgka_          10 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-----KHKNIINL   84 (299)
T ss_dssp             CCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCE
T ss_pred             ccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhc-----CCCeEEec
Confidence            34679999999999999999999876543       5799999876543  3466788999998884     68999999


Q ss_pred             cceeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceec
Q 045988          110 LDHFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------------RGVPLHMVKEICFHILVGLDHLHRELSIIHT  174 (530)
Q Consensus       110 ~~~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHr  174 (530)
                      ++++.+    ...+++||||| +|+|.+++.....              ..+++.++..++.||+.||+|||++ |||||
T Consensus        85 ~~~~~~----~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~-~ivHr  159 (299)
T d1fgka_          85 LGACTQ----DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK-KCIHR  159 (299)
T ss_dssp             EEEECS----SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCS
T ss_pred             cccccc----CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC-CEEee
Confidence            999984    46899999999 9999999975432              3489999999999999999999997 99999


Q ss_pred             cCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCC
Q 045988          175 DLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSV  254 (530)
Q Consensus       175 DIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (530)
                      ||||+|||++.                                                                     
T Consensus       160 DiKp~NiLl~~---------------------------------------------------------------------  170 (299)
T d1fgka_         160 DLAARNVLVTE---------------------------------------------------------------------  170 (299)
T ss_dssp             CCSGGGEEECT---------------------------------------------------------------------
T ss_pred             eecccceeecC---------------------------------------------------------------------
Confidence            99999999955                                                                     


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCc
Q 045988          255 DAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQY  329 (530)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y  329 (530)
                                                                     ++.+||+|||+++.....     .....||+.|
T Consensus       171 -----------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y  203 (299)
T d1fgka_         171 -----------------------------------------------DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKW  203 (299)
T ss_dssp             -----------------------------------------------TCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGG
T ss_pred             -----------------------------------------------CCCeEeccchhhccccccccccccccCCCChhh
Confidence                                                           467999999999764332     2345689999


Q ss_pred             cCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCc
Q 045988          330 RCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD  408 (530)
Q Consensus       330 ~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  408 (530)
                      +|||++.+..|+.++|||||||++|||++ |.+||...+       ...+...+.. |.                     
T Consensus       204 ~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~-------~~~~~~~i~~-~~---------------------  254 (299)
T d1fgka_         204 MAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP-------VEELFKLLKE-GH---------------------  254 (299)
T ss_dssp             SCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-------HHHHHHHHHT-TC---------------------
T ss_pred             hhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCC-------HHHHHHHHHc-CC---------------------
Confidence            99999999999999999999999999998 789996432       2222111110 10                     


Q ss_pred             cccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          409 LRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                        .+..+...++++.+||.+||+.||.+|||+.|||+
T Consensus       255 ------------------~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~  289 (299)
T d1fgka_         255 ------------------RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE  289 (299)
T ss_dssp             ------------------CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------------------CCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHH
Confidence                              11234456788999999999999999999999986

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.4e-46  Score=371.30  Aligned_cols=257  Identities=18%  Similarity=0.233  Sum_probs=202.1

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      +++|+++++||+|+||+||+|++..+|+.||||++..... ...+.+|+++++.|.     +|+||+.+++++.    .+
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~e~~~~~~l~-----~~~~i~~~~~~~~----~~   73 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-APQLRDEYRTYKLLA-----GCTGIPNVYYFGQ----EG   73 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-SCCHHHHHHHHHHTT-----TCTTCCCEEEEEE----ET
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC-cHHHHHHHHHHHHhc-----CCCCCCEEEEEee----cC
Confidence            7899999999999999999999999999999998866433 456788999999996     4577888888887    45


Q ss_pred             cEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCCCCC
Q 045988          121 QHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSGPPP  200 (530)
Q Consensus       121 ~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~  200 (530)
                      ...++|||||+++|.+++... ...++...+..++.|++.||+|||++ |||||||||+|||++.....           
T Consensus        74 ~~~~~vme~~~~~l~~~~~~~-~~~~~~~~~~~i~~q~~~~l~~lH~~-giiHrDiKp~Nili~~~~~~-----------  140 (293)
T d1csna_          74 LHNVLVIDLLGPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEK-SLVYRDIKPDNFLIGRPNSK-----------  140 (293)
T ss_dssp             TEEEEEEECCCCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECCSSST-----------
T ss_pred             CccEEEEEecCCCHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHC-CceeccCCccceeecCcccc-----------
Confidence            789999999999999988643 34599999999999999999999997 99999999999999542100           


Q ss_pred             ccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc
Q 045988          201 MLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEATSNE  280 (530)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (530)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (293)
T d1csna_         141 --------------------------------------------------------------------------------  140 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCchhhhhhhhhcccceEEecCCccccccc----------ccCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          281 GINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK----------QFTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~----------~~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                          ....++|+|||+|+....          .....+||+.|||||++.+..|+.++||||||
T Consensus       141 --------------------~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG  200 (293)
T d1csna_         141 --------------------NANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALG  200 (293)
T ss_dssp             --------------------TTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHH
T ss_pred             --------------------cCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhh
Confidence                                035699999999975322          13356799999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHH-hCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhcc
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMEL-LGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYD  429 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~-~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (530)
                      |++|+|++|.+||.+.....   .......+... ...++.                                      .
T Consensus       201 ~~l~elltg~~Pf~~~~~~~---~~~~~~~i~~~~~~~~~~--------------------------------------~  239 (293)
T d1csna_         201 HVFMYFLRGSLPWQGLKAAT---NKQKYERIGEKKQSTPLR--------------------------------------E  239 (293)
T ss_dssp             HHHHHHHHSSCTTSSCCSCC---HHHHHHHHHHHHHHSCHH--------------------------------------H
T ss_pred             HHHHHHHhCCCcCCCccchh---HHHHHHHHHhccCCCChH--------------------------------------H
Confidence            99999999999997544221   11112222111 000000                                      1


Q ss_pred             CChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          430 FSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       430 ~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                      +....++++.+|+..|+..+|.+||+.+.+.+
T Consensus       240 l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~  271 (293)
T d1csna_         240 LCAGFPEEFYKYMHYARNLAFDATPDYDYLQG  271 (293)
T ss_dssp             HTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence            12345678999999999999999998766544

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.4e-47  Score=378.24  Aligned_cols=248  Identities=20%  Similarity=0.327  Sum_probs=198.6

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecce
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLDH  112 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~  112 (530)
                      ..++|+++++||+|+||+||+|+.+     .+++.||||+++...  .....+.+|+.+|+++      +||||++++++
T Consensus        11 p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l------~h~niv~~~~~   84 (301)
T d1lufa_          11 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF------DNPNIVKLLGV   84 (301)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC------CCTTBCCEEEE
T ss_pred             CHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhc------CCCCcccceee
Confidence            3568999999999999999999865     356899999987543  2346789999999999      78899999999


Q ss_pred             eeecCCCCcEEEEEEecc-CcCHHHHHHhhc----------------------cCCCCHHHHHHHHHHHHHHHHHHHhhC
Q 045988          113 FKHSGPNGQHVCMVFEYL-GENLLTLIKYAD----------------------YRGVPLHMVKEICFHILVGLDHLHREL  169 (530)
Q Consensus       113 ~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~----------------------~~~l~~~~~~~i~~qll~aL~~LH~~~  169 (530)
                      +.    .....++||||+ +++|.+++....                      ...+++..+..|+.||+.||+|||++ 
T Consensus        85 ~~----~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~-  159 (301)
T d1lufa_          85 CA----VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-  159 (301)
T ss_dssp             EC----SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             ec----cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC-
Confidence            98    457899999999 899999986432                      12378899999999999999999997 


Q ss_pred             CceeccCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCC
Q 045988          170 SIIHTDLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSP  249 (530)
Q Consensus       170 gIvHrDIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (530)
                      |||||||||+||||+.                                                                
T Consensus       160 ~ivHrDlKp~NILld~----------------------------------------------------------------  175 (301)
T d1lufa_         160 KFVHRDLATRNCLVGE----------------------------------------------------------------  175 (301)
T ss_dssp             TCCCSCCSGGGEEECG----------------------------------------------------------------
T ss_pred             CeEeeEEcccceEECC----------------------------------------------------------------
Confidence            9999999999999965                                                                


Q ss_pred             CCCCCCCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-----ccCCCC
Q 045988          250 DHTSVDAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-----QFTNDI  324 (530)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-----~~~~~~  324 (530)
                                                                          ++.+||+|||+|.....     ..+...
T Consensus       176 ----------------------------------------------------~~~~Kl~DFGls~~~~~~~~~~~~~~~~  203 (301)
T d1lufa_         176 ----------------------------------------------------NMVVKIADFGLSRNIYSADYYKADGNDA  203 (301)
T ss_dssp             ----------------------------------------------------GGCEEECCCSCHHHHTGGGCBC----CC
T ss_pred             ----------------------------------------------------CCcEEEccchhheeccCCccccccCCCC
Confidence                                                                56799999999964322     234557


Q ss_pred             CCCCccCChhhcCCCCCCcchhHHHHHHHHHHHhCC-CCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccc
Q 045988          325 QTRQYRCPEVLLGSKYSTPADLWSFACICFELATGD-VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFF  403 (530)
Q Consensus       325 gt~~y~aPE~l~~~~~~~~~DiWSlG~il~elltG~-~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  403 (530)
                      ||+.|+|||++.+..|+.++|||||||++|||++|. +||.+..      ..+.+..+..  |.                
T Consensus       204 ~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~------~~e~~~~v~~--~~----------------  259 (301)
T d1lufa_         204 IPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA------HEEVIYYVRD--GN----------------  259 (301)
T ss_dssp             BCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHHHHT--TC----------------
T ss_pred             cCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCC------HHHHHHHHHc--CC----------------
Confidence            899999999999999999999999999999999995 6775432      1222221110  00                


Q ss_pred             cccCccccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          404 NRHGDLRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                             ....+..+++++.+||.+||+.||.+|||+.||++
T Consensus       260 -----------------------~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~  294 (301)
T d1lufa_         260 -----------------------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHR  294 (301)
T ss_dssp             -----------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----------------------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                                   11234556788999999999999999999999965

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-46  Score=373.91  Aligned_cols=251  Identities=25%  Similarity=0.359  Sum_probs=202.8

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeC-----CCCeEEEEEEecccc--cchHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDT-----QTSHYVALKVQKSAQ--HYTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~-----~~~~~vAiK~~~~~~--~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      +..++|++.++||+|+||.||+|+..     .+++.||||+++...  .....+.+|+.+++++.     +|||||++++
T Consensus        20 ~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~-----~HpnIv~~~g   94 (311)
T d1t46a_          20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-----NHMNIVNLLG   94 (311)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEE
T ss_pred             CCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhcc-----CCCCEEEEEE
Confidence            44579999999999999999999853     467899999987643  33456789999999984     6999999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc----------------CCCCHHHHHHHHHHHHHHHHHHHhhCCceec
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY----------------RGVPLHMVKEICFHILVGLDHLHRELSIIHT  174 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~----------------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHr  174 (530)
                      ++.    +...++|||||| +++|.+++.....                ..+++..+..|+.||+.||+|||++ |||||
T Consensus        95 ~~~----~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~-~ivHr  169 (311)
T d1t46a_          95 ACT----IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK-NCIHR  169 (311)
T ss_dssp             EEC----SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCS
T ss_pred             EEe----eCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC-Ceeec
Confidence            998    456799999999 8999999865431                2488999999999999999999997 99999


Q ss_pred             cCCCCcEEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCC
Q 045988          175 DLKPENVLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSV  254 (530)
Q Consensus       175 DIKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (530)
                      ||||+|||++.                                                                     
T Consensus       170 DLKp~NIl~~~---------------------------------------------------------------------  180 (311)
T d1t46a_         170 DLAARNILLTH---------------------------------------------------------------------  180 (311)
T ss_dssp             CCSGGGEEEET---------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            99999999965                                                                     


Q ss_pred             CCCCCCCCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCc
Q 045988          255 DAEPNGDSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQY  329 (530)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y  329 (530)
                                                                     ...++++|||.++.....     .....||+.|
T Consensus       181 -----------------------------------------------~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y  213 (311)
T d1t46a_         181 -----------------------------------------------GRITKICDFGLARDIKNDSNYVVKGNARLPVKW  213 (311)
T ss_dssp             -----------------------------------------------TTEEEECCCGGGSCTTSCTTSEECSSSEECGGG
T ss_pred             -----------------------------------------------cCcccccccchheeccCCCcceEeeecccChHH
Confidence                                                           567999999999764322     3445789999


Q ss_pred             cCChhhcCCCCCCcchhHHHHHHHHHHHh-CCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCc
Q 045988          330 RCPEVLLGSKYSTPADLWSFACICFELAT-GDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGD  408 (530)
Q Consensus       330 ~aPE~l~~~~~~~~~DiWSlG~il~ellt-G~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  408 (530)
                      +|||++.+..++.++|||||||++|||++ |.+||...+      ....+..++.. |.                     
T Consensus       214 ~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~------~~~~~~~~i~~-~~---------------------  265 (311)
T d1t46a_         214 MAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP------VDSKFYKMIKE-GF---------------------  265 (311)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC------SSHHHHHHHHH-TC---------------------
T ss_pred             cCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCC------HHHHHHHHHhc-CC---------------------
Confidence            99999999899999999999999999998 666665433      22223222211 00                     


Q ss_pred             cccchhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc
Q 045988          409 LRHIRRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT  461 (530)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~  461 (530)
                                        ....+...++.+.+||.+||++||.+|||+.|||+
T Consensus       266 ------------------~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         266 ------------------RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             ------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------------------CCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                              11223445788999999999999999999999986

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-47  Score=378.58  Aligned_cols=250  Identities=20%  Similarity=0.260  Sum_probs=198.2

Q ss_pred             eCCCEEEEEEeccccceEEEEEEeCCCCeE--EEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeee
Q 045988           40 KNGRYVVQSKLGWGHFSTVWLAWDTQTSHY--VALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKH  115 (530)
Q Consensus        40 ~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~--vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~  115 (530)
                      +-++|++.++||+|+||+||+|+++.+|..  ||||.++..  ....+.+.+|+++|.++.     +|||||++++++..
T Consensus         8 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~-----~HpnIv~~~~~~~~   82 (309)
T d1fvra_           8 DWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HHPNIINLLGACEH   82 (309)
T ss_dssp             CGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCC-----CCTTBCCEEEEEEE
T ss_pred             CHHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhcc-----CCCCEeeEEEEEec
Confidence            347899999999999999999999888864  677766533  234567899999999884     58999999999984


Q ss_pred             cCCCCcEEEEEEecc-CcCHHHHHHhh--------------ccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCc
Q 045988          116 SGPNGQHVCMVFEYL-GENLLTLIKYA--------------DYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPEN  180 (530)
Q Consensus       116 ~~~~~~~~~lVmE~~-~~~L~~~i~~~--------------~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~N  180 (530)
                          +..++|||||| +|+|.+++...              ....+++..+..++.||+.||.|||++ |||||||||+|
T Consensus        83 ----~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~-~iiHrDlkp~N  157 (309)
T d1fvra_          83 ----RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARN  157 (309)
T ss_dssp             ----TTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGG
T ss_pred             ----CCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC-Cccccccccce
Confidence                47899999999 89999998643              224589999999999999999999997 99999999999


Q ss_pred             EEEeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 045988          181 VLLMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNG  260 (530)
Q Consensus       181 ILl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (530)
                      ||++.                                                                           
T Consensus       158 IL~~~---------------------------------------------------------------------------  162 (309)
T d1fvra_         158 ILVGE---------------------------------------------------------------------------  162 (309)
T ss_dssp             EEECG---------------------------------------------------------------------------
T ss_pred             EEEcC---------------------------------------------------------------------------
Confidence            99965                                                                           


Q ss_pred             CCcccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc--cCCCCCCCCccCChhhcCC
Q 045988          261 DSVEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ--FTNDIQTRQYRCPEVLLGS  338 (530)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~--~~~~~gt~~y~aPE~l~~~  338 (530)
                                                               +..+||+|||+|+.....  .....||+.|+|||.+.+.
T Consensus       163 -----------------------------------------~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~  201 (309)
T d1fvra_         163 -----------------------------------------NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYS  201 (309)
T ss_dssp             -----------------------------------------GGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHC
T ss_pred             -----------------------------------------CCceEEccccccccccccccccceecCCcccchHHhccC
Confidence                                                     567999999999764433  2345689999999999998


Q ss_pred             CCCCcchhHHHHHHHHHHHhCC-CCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhccc
Q 045988          339 KYSTPADLWSFACICFELATGD-VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRF  417 (530)
Q Consensus       339 ~~~~~~DiWSlG~il~elltG~-~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (530)
                      .|+.++|||||||++|||++|. +||...+       ...+  +..+..                               
T Consensus       202 ~~~~~sDvwSfGvil~ell~~~~~p~~~~~-------~~~~--~~~i~~-------------------------------  241 (309)
T d1fvra_         202 VYTTNSDVWSYGVLLWEIVSLGGTPYCGMT-------CAEL--YEKLPQ-------------------------------  241 (309)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTSCCTTTTCC-------HHHH--HHHGGG-------------------------------
T ss_pred             CCCccceeehhHHHHHHHHhcCCCCCCCCC-------HHHH--HHHHHh-------------------------------
Confidence            9999999999999999999975 5675322       1111  111100                               


Q ss_pred             CCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          418 WPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                             ...+..+...++++.+||.+||+.||++|||+.|||+|
T Consensus       242 -------~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         242 -------GYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  279 (309)
T ss_dssp             -------TCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------cCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                   01123445677899999999999999999999999987

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-46  Score=372.10  Aligned_cols=262  Identities=20%  Similarity=0.250  Sum_probs=190.8

Q ss_pred             CCCEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHH--HHhhcCCCCCCcceeEecceeeecCC
Q 045988           41 NGRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKIL--KQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        41 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il--~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      ..+|.+.++||+|+||+||+|+.  +|+.||||+++....  ....+|.+++  ..+      +|||||++++++...+.
T Consensus         2 ~~~~~l~~~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~~~--~~~~~e~ei~~~~~~------~HpnIv~~~~~~~~~~~   71 (303)
T d1vjya_           2 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE--RSWFREAEIYQTVML------RHENILGFIAADNKDNG   71 (303)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEE--TTEEEEEEEECGGGH--HHHHHHHHHHTSTTC------CCTTBCCEEEEEEEECS
T ss_pred             CcEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccch--hHHHHHHHHHHHhhC------CCCcCcceEEEEEeCCC
Confidence            35799999999999999999975  689999999876543  3444554444  333      79999999999987765


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-------hCCceeccCCCCcEEEeeccCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHR-------ELSIIHTDLKPENVLLMSMIDPS  190 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~-------~~gIvHrDIKp~NILl~~~~~~~  190 (530)
                      ....+||||||| +++|.++++..   .+++..+..++.|++.||+|||+       ..|||||||||+||||+.     
T Consensus        72 ~~~~~~lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~-----  143 (303)
T d1vjya_          72 TWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK-----  143 (303)
T ss_dssp             SSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECT-----
T ss_pred             cceEEEEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcC-----
Confidence            556899999999 88999999743   48999999999999999999996       139999999999999955     


Q ss_pred             CCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 045988          191 KDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGS  270 (530)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (530)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (303)
T d1vjya_         144 --------------------------------------------------------------------------------  143 (303)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccCCCCCchhhhhhhhhcccceEEecCCccccccc-------ccCCCCCCCCccCChhhcCCC----
Q 045988          271 LIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYK-------QFTNDIQTRQYRCPEVLLGSK----  339 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~-------~~~~~~gt~~y~aPE~l~~~~----  339 (530)
                                                     ++.+||+|||++.....       .....+||+.|+|||++.+..    
T Consensus       144 -------------------------------~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  192 (303)
T d1vjya_         144 -------------------------------NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKH  192 (303)
T ss_dssp             -------------------------------TSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTC
T ss_pred             -------------------------------CCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccC
Confidence                                           56799999999965422       134568999999999987643    


Q ss_pred             --CCCcchhHHHHHHHHHHHhCCCCCCCCCCCCCCCC-----hHHHHHHHHHhCCCchhhhcCCCcccccccccCccccc
Q 045988          340 --YSTPADLWSFACICFELATGDVLFDPHSGDNYDRD-----EDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHI  412 (530)
Q Consensus       340 --~~~~~DiWSlG~il~elltG~~PF~~~~~~~~~~~-----~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  412 (530)
                        ++.++|||||||+||||++|.+||...........     ......+....-..                        
T Consensus       193 ~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  248 (303)
T d1vjya_         193 FESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ------------------------  248 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS------------------------
T ss_pred             CCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhcc------------------------
Confidence              56789999999999999999998864432211000     00111111110000                        


Q ss_pred             hhcccCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          413 RRLRFWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                         .   ..+..... ..+......+.+|+.+||+.||.+|||+.||+++
T Consensus       249 ---~---~~p~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~  291 (303)
T d1vjya_         249 ---K---LRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             ---C---CCCCCCGG-GGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             ---c---cCCCCCcc-cCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence               0   00000000 0012234568899999999999999999999863

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-46  Score=373.04  Aligned_cols=255  Identities=22%  Similarity=0.352  Sum_probs=204.1

Q ss_pred             eeCCCEEEEEEeccccceEEEEEEeCC-----CCeEEEEEEeccccc--chHHHHHHHHHHHHhhcCCCCCCcceeEecc
Q 045988           39 FKNGRYVVQSKLGWGHFSTVWLAWDTQ-----TSHYVALKVQKSAQH--YTEAALDEIKILKQIAEGDPDDKKCVVKLLD  111 (530)
Q Consensus        39 ~~~~~y~i~~~LG~G~fg~Vy~a~~~~-----~~~~vAiK~~~~~~~--~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~  111 (530)
                      |..++|++.++||+|+||+||+|.++.     +++.||||+++....  ....+.+|+.+++++      +|||||++++
T Consensus        17 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l------~h~nIv~~~~   90 (308)
T d1p4oa_          17 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF------NCHHVVRLLG   90 (308)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC------CCTTBCCEEE
T ss_pred             ecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHc------CCCCEeeeee
Confidence            335799999999999999999998753     468999999876432  234578999999998      7889999999


Q ss_pred             eeeecCCCCcEEEEEEecc-CcCHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEE
Q 045988          112 HFKHSGPNGQHVCMVFEYL-GENLLTLIKYADY--------RGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVL  182 (530)
Q Consensus       112 ~~~~~~~~~~~~~lVmE~~-~~~L~~~i~~~~~--------~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NIL  182 (530)
                      ++.    .....++||||| +|+|.+++.....        ..++...+..++.||+.||.|||++ +||||||||+|||
T Consensus        91 ~~~----~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~-~ivHrDlk~~NiL  165 (308)
T d1p4oa_          91 VVS----QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCM  165 (308)
T ss_dssp             EEC----SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT-TCBCSCCSGGGEE
T ss_pred             EEe----cCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC-CeeeceEcCCcee
Confidence            998    446899999999 9999998864321        2368899999999999999999997 9999999999999


Q ss_pred             EeeccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 045988          183 LMSMIDPSKDPRKSGPPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDS  262 (530)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (530)
                      |+.                                                                             
T Consensus       166 ld~-----------------------------------------------------------------------------  168 (308)
T d1p4oa_         166 VAE-----------------------------------------------------------------------------  168 (308)
T ss_dssp             ECT-----------------------------------------------------------------------------
T ss_pred             ecC-----------------------------------------------------------------------------
Confidence            965                                                                             


Q ss_pred             cccccccccccccccccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-----cCCCCCCCCccCChhhcC
Q 045988          263 VEDQQNGSLIKNEATSNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-----FTNDIQTRQYRCPEVLLG  337 (530)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-----~~~~~gt~~y~aPE~l~~  337 (530)
                                                             +..+||+|||+|......     .....||+.|+|||.+.+
T Consensus       169 ---------------------------------------~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~  209 (308)
T d1p4oa_         169 ---------------------------------------DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKD  209 (308)
T ss_dssp             ---------------------------------------TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHH
T ss_pred             ---------------------------------------CceEEEeecccceeccCCcceeeccceecccccCCHHHHcc
Confidence                                                   567999999999754322     344468999999999999


Q ss_pred             CCCCCcchhHHHHHHHHHHHhCC-CCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcc
Q 045988          338 SKYSTPADLWSFACICFELATGD-VLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLR  416 (530)
Q Consensus       338 ~~~~~~~DiWSlG~il~elltG~-~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (530)
                      ..|+.++|||||||++|||++|. +||.+.+      ....+..+.+  |                              
T Consensus       210 ~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~------~~~~~~~i~~--~------------------------------  251 (308)
T d1p4oa_         210 GVFTTYSDVWSFGVVLWEIATLAEQPYQGLS------NEQVLRFVME--G------------------------------  251 (308)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC------HHHHHHHHHT--T------------------------------
T ss_pred             CCCCcccccccHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHh--C------------------------------
Confidence            99999999999999999999984 7785432      2222222211  0                              


Q ss_pred             cCCchhhhhhhccCChhcHHHHHHHHhhccCcCCCCCcCHHHHhc------CCCCCC
Q 045988          417 FWPLNKVLIEKYDFSEKDANDMADFLVPILDFVPEKRPTAAQCLT------HPWINV  467 (530)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~------hp~f~~  467 (530)
                               .....+...++.+.+||.+||+.||.+|||+.||++      +|+|++
T Consensus       252 ---------~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         252 ---------GLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             ---------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHH
T ss_pred             ---------CCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCcC
Confidence                     011233456788999999999999999999999998      677653

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-45  Score=364.16  Aligned_cols=246  Identities=21%  Similarity=0.276  Sum_probs=192.5

Q ss_pred             EEEEEEeccccceEEEEEEeCCCC---eEEEEEEeccc--ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTS---HYVALKVQKSA--QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~---~~vAiK~~~~~--~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      +.+.++||+|+||+||+|++..++   ..||||.++..  ....+.+.+|+++|++|      .|||||++++++...  
T Consensus        29 ~~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~~~g~~~~~--  100 (311)
T d1r0pa_          29 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF------SHPNVLSLLGICLRS--  100 (311)
T ss_dssp             EEEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTC------CCTTBCCCCEEEEET--
T ss_pred             eccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC------CCCCEeEEeEEEEec--
Confidence            344688999999999999986653   46999988643  33456789999999999      789999999997642  


Q ss_pred             CCcEEEEEEecc-CcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEeeccCCCCCCCCCC
Q 045988          119 NGQHVCMVFEYL-GENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLMSMIDPSKDPRKSG  197 (530)
Q Consensus       119 ~~~~~~lVmE~~-~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~~~~~~~~~~~~~~  197 (530)
                       ....++||||| +++|.+++... ...++...+..++.||+.||.|||++ +|+||||||+||||+.            
T Consensus       101 -~~~~~lv~E~~~~g~l~~~~~~~-~~~~~~~~~~~i~~qia~gL~~lH~~-~iiHrDLK~~NILl~~------------  165 (311)
T d1r0pa_         101 -EGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLASK-KFVHRDLAARNCMLDE------------  165 (311)
T ss_dssp             -TTEEEEEEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECT------------
T ss_pred             -CCceEEEEEEeecCchhhhhccc-cccchHHHHHHHHHHHHHhhhhhccc-CcccCCccHHhEeECC------------
Confidence             35799999999 88998887643 34478889999999999999999997 9999999999999955            


Q ss_pred             CCCccccccccccCCCchhHHHHHHHHHhhhcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 045988          198 PPPMLLTKKDKLVLDPSNQKKKIKKKAKKAAQGCSSNEACEENESDSKPSSPDHTSVDAEPNGDSVEDQQNGSLIKNEAT  277 (530)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (530)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (311)
T d1r0pa_         166 --------------------------------------------------------------------------------  165 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCCchhhhhhhhhcccceEEecCCcccccccc-------cCCCCCCCCccCChhhcCCCCCCcchhHHHH
Q 045988          278 SNEGINKDCKRPSRSRRKELLAAVDLKCKLVDFGNACWTYKQ-------FTNDIQTRQYRCPEVLLGSKYSTPADLWSFA  350 (530)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DfG~a~~~~~~-------~~~~~gt~~y~aPE~l~~~~~~~~~DiWSlG  350 (530)
                                              ...+||+|||+++.....       .....||+.|+|||++....++.++||||||
T Consensus       166 ------------------------~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfG  221 (311)
T d1r0pa_         166 ------------------------KFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFG  221 (311)
T ss_dssp             ------------------------TCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHH
T ss_pred             ------------------------CCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhH
Confidence                                    467999999999753221       2335689999999999988999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCChHHHHHHHHHhCCCchhhhcCCCcccccccccCccccchhcccCCchhhhhhhccC
Q 045988          351 CICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIAFGGRYSRDFFNRHGDLRHIRRLRFWPLNKVLIEKYDF  430 (530)
Q Consensus       351 ~il~elltG~~PF~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (530)
                      |++|||++|..||.....     ..+....+.  -|.                                       ....
T Consensus       222 ivl~El~t~~~p~~~~~~-----~~~~~~~i~--~g~---------------------------------------~~~~  255 (311)
T d1r0pa_         222 VLLWELMTRGAPPYPDVN-----TFDITVYLL--QGR---------------------------------------RLLQ  255 (311)
T ss_dssp             HHHHHHHTTSCCSCC-----------CHHHHH--TTC---------------------------------------CCCC
T ss_pred             HHHHHHHHCCCCCCCCCC-----HHHHHHHHH--cCC---------------------------------------CCCC
Confidence            999999998888753221     111111110  010                                       1123


Q ss_pred             ChhcHHHHHHHHhhccCcCCCCCcCHHHHhcC
Q 045988          431 SEKDANDMADFLVPILDFVPEKRPTAAQCLTH  462 (530)
Q Consensus       431 ~~~~~~~~~dLl~~mL~~dP~~Rpta~elL~h  462 (530)
                      +...++.+.+||.+||+.||.+|||+.|+++|
T Consensus       256 p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~  287 (311)
T d1r0pa_         256 PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  287 (311)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             cccCcHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            34556889999999999999999999999998

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=2.5e-25  Score=204.06  Aligned_cols=118  Identities=20%  Similarity=0.241  Sum_probs=89.1

Q ss_pred             EEEEEEeccccceEEEEEEeCCCCeEEEEEEeccccc-------------------chHHHHHHHHHHHHhhcCCCCCCc
Q 045988           44 YVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQH-------------------YTEAALDEIKILKQIAEGDPDDKK  104 (530)
Q Consensus        44 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~-------------------~~~~~~~Ei~il~~l~~~~~~~h~  104 (530)
                      +.+.++||+|+||+||+|++. +|+.||||+++....                   ......+|..++.++      .|.
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~-~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~   74 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL------QGL   74 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET-TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT------TTS
T ss_pred             chhCCEeeeCcceEEEEEECC-CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHc------cCC
Confidence            468999999999999999874 689999998653210                   112334577888887      566


Q ss_pred             ceeEecceeeecCCCCcEEEEEEeccCcCHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCceeccCCCCcEEEe
Q 045988          105 CVVKLLDHFKHSGPNGQHVCMVFEYLGENLLTLIKYADYRGVPLHMVKEICFHILVGLDHLHRELSIIHTDLKPENVLLM  184 (530)
Q Consensus       105 ~Iv~~~~~~~~~~~~~~~~~lVmE~~~~~L~~~i~~~~~~~l~~~~~~~i~~qll~aL~~LH~~~gIvHrDIKp~NILl~  184 (530)
                      +++..+++..        .++||||+++...        ..++...+..++.||+.||+|||++ ||+||||||+|||++
T Consensus        75 ~v~~~~~~~~--------~~lvme~~~~~~~--------~~l~~~~~~~i~~ql~~~l~~lH~~-giiHrDiKP~NILv~  137 (191)
T d1zara2          75 AVPKVYAWEG--------NAVLMELIDAKEL--------YRVRVENPDEVLDMILEEVAKFYHR-GIVHGDLSQYNVLVS  137 (191)
T ss_dssp             SSCCEEEEET--------TEEEEECCCCEEG--------GGCCCSCHHHHHHHHHHHHHHHHHT-TEECSCCSTTSEEEE
T ss_pred             CcceEEEecC--------CEEEEEeeccccc--------cchhhHHHHHHHHHHHHHHHHHhhC-CEEEccCChhheeee
Confidence            6777665432        3799999955321        1255566788999999999999997 999999999999995


Q ss_pred             e
Q 045988          185 S  185 (530)
Q Consensus       185 ~  185 (530)
                      .
T Consensus       138 ~  138 (191)
T d1zara2         138 E  138 (191)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.15  E-value=6.2e-06  Score=76.70  Aligned_cols=84  Identities=13%  Similarity=0.015  Sum_probs=56.2

Q ss_pred             CCEEEEEEeccccceEEEEEEeCCCCeEEEEEEeccc-ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCC
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA-QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNG  120 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~-~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~  120 (530)
                      ..|++.+..+-++.+.||+..  .++..+.||+.... ......+.+|..++..|....     -+.+++.+..    .+
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~--~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~v-----pvP~vl~~~~----~~   82 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLV--GENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKL-----PVPKVLHFER----HD   82 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEE--CSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTS-----CCCCEEEEEE----ET
T ss_pred             hceEEEEcCCCCCCCcEEEEE--eCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccC-----CCCcEEEEEe----cC
Confidence            567777776656668999984  45556778876543 333456788999998885322     1455565555    33


Q ss_pred             cEEEEEEecc-CcCHHH
Q 045988          121 QHVCMVFEYL-GENLLT  136 (530)
Q Consensus       121 ~~~~lVmE~~-~~~L~~  136 (530)
                      ...++||+++ |..+.+
T Consensus        83 ~~~~lv~~~l~G~~~~~   99 (263)
T d1j7la_          83 GWSNLLMSEADGVLCSE   99 (263)
T ss_dssp             TEEEEEEECCSSEEHHH
T ss_pred             CceEEEEEecccccccc
Confidence            6789999999 656544

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.61  E-value=9.8e-05  Score=72.88  Aligned_cols=76  Identities=17%  Similarity=0.141  Sum_probs=47.9

Q ss_pred             EEEeccccceEEEEEEeCCCCeEEEEEEeccc--------ccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCC
Q 045988           47 QSKLGWGHFSTVWLAWDTQTSHYVALKVQKSA--------QHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGP  118 (530)
Q Consensus        47 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~--------~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~  118 (530)
                      .+.||.|....||++.+..+++.|++|.-...        .....+...|.++|+.+....   ...+.+++.+-     
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~---p~~vP~v~~~d-----  102 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHV---PHLVPRVFYSD-----  102 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTC---GGGSCCEEEEE-----
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhC---CCCcceEEEEc-----
Confidence            56799999999999988777889999953321        123345677999998876422   12344554432     


Q ss_pred             CCcEEEEEEeccC
Q 045988          119 NGQHVCMVFEYLG  131 (530)
Q Consensus       119 ~~~~~~lVmE~~~  131 (530)
                       ....++|||+++
T Consensus       103 -~~~~~lvmE~L~  114 (392)
T d2pula1         103 -TEMAVTVMEDLS  114 (392)
T ss_dssp             -TTTTEEEECCCT
T ss_pred             -CCCCEEEEeccC
Confidence             134578999993

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.54  E-value=0.00011  Score=67.53  Aligned_cols=76  Identities=17%  Similarity=0.152  Sum_probs=50.2

Q ss_pred             EEeccccc-eEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEE
Q 045988           48 SKLGWGHF-STVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMV  126 (530)
Q Consensus        48 ~~LG~G~f-g~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lV  126 (530)
                      +.+..|.. +.||++.. .++..+.+|+.....  ...+..|..+|+.|.....    .+.+++.+..    +....++|
T Consensus        16 ~~~~~G~s~~~v~r~~~-~~~~~~vlK~~~~~~--~~~l~~E~~~l~~L~~~gv----pvP~v~~~~~----~~~~~~~v   84 (255)
T d1nd4a_          16 AQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSGA--LNELQDEAARLSWLATTGV----PCAAVLDVVT----EAGRDWLL   84 (255)
T ss_dssp             EECSCTTSSCEEEEEEC-TTSCCEEEEEECSCT--TSCHHHHHHHHHHHHTTTC----CBCCEEEEEE----CSSCEEEE
T ss_pred             EEcCCcccCCeEEEEEe-CCCCEEEEEeCCccC--HhHHHHHHHHHHHHHhcCC----CCCceeeecc----cccceEEE
Confidence            34555554 68999874 456678889866543  3457789999998875432    2555565554    33578999


Q ss_pred             Eecc-CcCH
Q 045988          127 FEYL-GENL  134 (530)
Q Consensus       127 mE~~-~~~L  134 (530)
                      |+++ |.++
T Consensus        85 ~~~i~G~~~   93 (255)
T d1nd4a_          85 LGEVPGQDL   93 (255)
T ss_dssp             EECCSSEET
T ss_pred             EEeeecccc
Confidence            9999 5443

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0015  Score=62.26  Aligned_cols=72  Identities=14%  Similarity=0.169  Sum_probs=46.5

Q ss_pred             eEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceeeecCCCCcEEEEEEeccC
Q 045988           56 STVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLG  131 (530)
Q Consensus        56 g~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~~~~~~~~~~~lVmE~~~  131 (530)
                      -.||++.. .+|..|++|+........+.+..|+..+..|...... .+..+..-+-....  .+...+.|+++++
T Consensus        36 N~vy~v~~-~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gip-v~~p~~~~g~~~~~--~~~~~~~l~~~~~  107 (325)
T d1zyla1          36 NRVYQFQD-EDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVP-VAAPVAFNGQTLLN--HQGFYFAVFPSVG  107 (325)
T ss_dssp             SEEEEECC-TTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCS-BCCCCCBTTBSCEE--ETTEEEEEEECCC
T ss_pred             ceeEEEEc-CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCC-CCCceecCCCeeee--eeeEEEEEEeecC
Confidence            58999964 5688899999887655567788999999999765421 11112211111101  2356788899884

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.25  E-value=0.012  Score=55.28  Aligned_cols=54  Identities=9%  Similarity=0.041  Sum_probs=34.7

Q ss_pred             CEEEEEEeccccceEEEEEEeCCCCeEEEEEEecccccchHHHHHHHHHHHHhhcCC
Q 045988           43 RYVVQSKLGWGHFSTVWLAWDTQTSHYVALKVQKSAQHYTEAALDEIKILKQIAEGD   99 (530)
Q Consensus        43 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~   99 (530)
                      ...-.+.|..|---+.|++... +| .|++|++.... ....+..|+++|..|....
T Consensus        19 ~~~~~~~i~~G~~N~ny~v~t~-~g-~yVLri~~~~~-~~~~l~~~~~~l~~L~~~g   72 (316)
T d2ppqa1          19 SLTSYKGIAEGVENSNFLLHTT-KD-PLILTLYEKRV-EKNDLPFFLGLMQHLAAKG   72 (316)
T ss_dssp             CEEEEEEECC---EEEEEEEES-SC-CEEEEEECC----CCHHHHHHHHHHHHHHTT
T ss_pred             CceEeecCCCCcccCeEEEEEC-CC-cEEEEEcCCCC-CHHHHHHHHHHHHhhhhcc
Confidence            4455677888888889998643 34 48999986532 2456677889999987654

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.23  E-value=0.0073  Score=58.90  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=51.7

Q ss_pred             CCEEEEEEeccccceEEEEEEeCC-------CCeEEEEEEecccccchHHHHHHHHHHHHhhcCCCCCCcceeEecceee
Q 045988           42 GRYVVQSKLGWGHFSTVWLAWDTQ-------TSHYVALKVQKSAQHYTEAALDEIKILKQIAEGDPDDKKCVVKLLDHFK  114 (530)
Q Consensus        42 ~~y~i~~~LG~G~fg~Vy~a~~~~-------~~~~vAiK~~~~~~~~~~~~~~Ei~il~~l~~~~~~~h~~Iv~~~~~~~  114 (530)
                      +.++ +++|+-|-.-.+|++....       ..+.|.+++.-... ......+|..+++.+...+.     ..+++.+|.
T Consensus        43 ~~l~-v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~-~~idr~~E~~i~~~ls~~gl-----~Pkll~~~~  115 (395)
T d1nw1a_          43 EHLR-ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE-TESHLVAESVIFTLLSERHL-----GPKLYGIFS  115 (395)
T ss_dssp             GGEE-EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC-CHHHHHHHHHHHHHHHHTTS-----SSCEEEEET
T ss_pred             cceE-EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcc-hhhHHHHHHHHHHHHHhCCC-----CCeEEEEcC
Confidence            3455 4678889999999998643       34678888876433 34456789999999975432     345666654


Q ss_pred             ecCCCCcEEEEEEeccC
Q 045988          115 HSGPNGQHVCMVFEYLG  131 (530)
Q Consensus       115 ~~~~~~~~~~lVmE~~~  131 (530)
                          +    .+||||+.
T Consensus       116 ----~----g~I~efi~  124 (395)
T d1nw1a_         116 ----G----GRLEEYIP  124 (395)
T ss_dssp             ----T----EEEECCCC
T ss_pred             ----C----ceEEEEec
Confidence                1    57899983