Citrus Sinensis ID: 046163
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 357 | ||||||
| 224113935 | 674 | predicted protein [Populus trichocarpa] | 0.711 | 0.376 | 0.434 | 4e-47 | |
| 255555035 | 671 | ATP binding protein, putative [Ricinus c | 0.775 | 0.412 | 0.401 | 9e-46 | |
| 42567050 | 1262 | cysteine-rich receptor-like protein kina | 0.649 | 0.183 | 0.418 | 4e-45 | |
| 255555031 | 674 | ATP binding protein, putative [Ricinus c | 0.616 | 0.326 | 0.435 | 4e-45 | |
| 152013452 | 676 | RecName: Full=Cysteine-rich receptor-lik | 0.649 | 0.343 | 0.418 | 4e-45 | |
| 3021268 | 1240 | putative protein [Arabidopsis thaliana] | 0.649 | 0.187 | 0.418 | 4e-45 | |
| 297813907 | 340 | hypothetical protein ARALYDRAFT_911789 [ | 0.770 | 0.808 | 0.373 | 6e-45 | |
| 255555033 | 579 | ATP binding protein, putative [Ricinus c | 0.605 | 0.373 | 0.429 | 7e-44 | |
| 224076400 | 666 | predicted protein [Populus trichocarpa] | 0.719 | 0.385 | 0.388 | 2e-43 | |
| 15234659 | 675 | cysteine-rich receptor-like protein kina | 0.775 | 0.410 | 0.358 | 3e-42 |
| >gi|224113935|ref|XP_002316618.1| predicted protein [Populus trichocarpa] gi|222859683|gb|EEE97230.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 119/274 (43%), Positives = 161/274 (58%), Gaps = 20/274 (7%)
Query: 32 YCSDGMNFTSNSTYQSNLKLLLSTLRSSATHGSSDKFSDGFYNATAGQDPDKVYGLFLCR 91
YC + FT NSTYQ+NL LLLS+L S+AT + + GFYN +AGQDPD VYG+FLCR
Sbjct: 31 YCPNTTTFTRNSTYQANLNLLLSSLSSNATRNNIN----GFYNVSAGQDPDAVYGMFLCR 86
Query: 92 GDVSRETCQDCVNFAISELSKFCPVQKIAVIWYQECLLHYSNYSFLSTVDTSAVVLVPKP 151
GDVS C++CVNFA ++ + CP++K+A+IW+ EC L YSN + STVD + + P
Sbjct: 87 GDVSNSVCRNCVNFAAKDVLERCPIEKVAMIWFDECELRYSNRNIFSTVDQDFTLFMMSP 146
Query: 152 QD---SPNRSFDGGVSNLMNEALSRALRTP---KMFGTAKKDYSDSPTLYGLAQCTQDLS 205
+ P+R F+ V +N+ +RA P K F + +Y+ LY L QCT DLS
Sbjct: 147 NNVTVQPDR-FNQLVETTINDIAARAASAPSGAKKFAVQQVNYTGIQKLYTLVQCTPDLS 205
Query: 206 PDQCRSCLGEAISKLAGCCSIRQGGQVLYPSCITRYELSQFYN--------DTLIASPTP 257
C CL AISKL CC+ +QGG+VL+ SC RYEL +FYN
Sbjct: 206 TPDCSRCLQGAISKLGNCCNRKQGGRVLFASCNFRYELYEFYNATAAAEAAPPPPPVALS 265
Query: 258 APPSPGSERSSKGRGTKAIWIAIGTTIPLFILLV 291
PP+ G E + KG+G + + I IP+ + LV
Sbjct: 266 PPPTSGPE-TRKGKGGVSTVLIIAILIPVTVSLV 298
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555035|ref|XP_002518555.1| ATP binding protein, putative [Ricinus communis] gi|223542400|gb|EEF43942.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|42567050|ref|NP_194047.2| cysteine-rich receptor-like protein kinase 8 [Arabidopsis thaliana] gi|332659317|gb|AEE84717.1| cysteine-rich receptor-like protein kinase 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255555031|ref|XP_002518553.1| ATP binding protein, putative [Ricinus communis] gi|223542398|gb|EEF43940.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|152013452|sp|O65468.2|CRK8_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 8; Short=Cysteine-rich RLK8; Flags: Precursor | Back alignment and taxonomy information |
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| >gi|3021268|emb|CAA18463.1| putative protein [Arabidopsis thaliana] gi|7269163|emb|CAB79271.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297813907|ref|XP_002874837.1| hypothetical protein ARALYDRAFT_911789 [Arabidopsis lyrata subsp. lyrata] gi|297320674|gb|EFH51096.1| hypothetical protein ARALYDRAFT_911789 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|255555033|ref|XP_002518554.1| ATP binding protein, putative [Ricinus communis] gi|223542399|gb|EEF43941.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224076400|ref|XP_002304937.1| predicted protein [Populus trichocarpa] gi|222847901|gb|EEE85448.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|15234659|ref|NP_192429.1| cysteine-rich receptor-like protein kinase 25 [Arabidopsis thaliana] gi|75335771|sp|Q9M0X5.1|CRK25_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 25; Short=Cysteine-rich RLK25; Flags: Precursor gi|7267280|emb|CAB81062.1| receptor protein kinase-like protein [Arabidopsis thaliana] gi|332657090|gb|AEE82490.1| cysteine-rich receptor-like protein kinase 25 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 357 | ||||||
| TAIR|locus:2121676 | 669 | CRK10 "cysteine-rich RLK (RECE | 0.719 | 0.384 | 0.378 | 1.2e-51 | |
| TAIR|locus:2121651 | 676 | CRK8 "cysteine-rich RLK (RECEP | 0.616 | 0.325 | 0.423 | 4.2e-51 | |
| TAIR|locus:2121636 | 659 | CRK7 "cysteine-rich RLK (RECEP | 0.722 | 0.391 | 0.377 | 5.1e-51 | |
| TAIR|locus:2121686 | 645 | CRK19 "cysteine-rich RLK (RECE | 0.719 | 0.398 | 0.391 | 1.2e-47 | |
| TAIR|locus:2115728 | 675 | CRK25 "cysteine-rich RLK (RECE | 0.619 | 0.327 | 0.394 | 1e-45 | |
| TAIR|locus:2121626 | 830 | CRK23 "cysteine-rich RLK (RECE | 0.616 | 0.265 | 0.393 | 8e-45 | |
| TAIR|locus:2077147 | 676 | CRK4 "cysteine-rich RLK (RECEP | 0.593 | 0.313 | 0.436 | 1.7e-43 | |
| TAIR|locus:2121666 | 265 | EP1 "AT4G23170" [Arabidopsis t | 0.616 | 0.830 | 0.410 | 2e-40 | |
| TAIR|locus:2141762 | 665 | CRK26 "cysteine-rich RLK (RECE | 0.605 | 0.324 | 0.347 | 2.2e-37 | |
| TAIR|locus:2141201 | 679 | CRK29 "cysteine-rich RLK (RECE | 0.700 | 0.368 | 0.317 | 7.4e-35 |
| TAIR|locus:2121676 CRK10 "cysteine-rich RLK (RECEPTOR-like protein kinase) 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 448 (162.8 bits), Expect = 1.2e-51, Sum P(2) = 1.2e-51
Identities = 104/275 (37%), Positives = 159/275 (57%)
Query: 25 NPWRMGYYCSDGMNFTSNSTYQSNLKLLLSTLRSSATHGSSDKFSDGFYNATAGQDPDKV 84
+P + + C + N+TSNSTY +NLK LL++L S+ + S +S GF NAT GQ PD+V
Sbjct: 36 DPTYVYHTCQNTANYTSNSTYNNNLKTLLASL--SSRNAS---YSTGFQNATVGQAPDRV 90
Query: 85 YGLFLCRGDVSRETCQDCVNFAISELSKFCPVQKIAVIWYQECLLHYSNYSFLSTVDTSA 144
GLF CRGDVS E C+ CV+FA+++ CP QK A ++Y EC+L YSN + LST+ T+
Sbjct: 91 TGLFNCRGDVSTEVCRRCVSFAVNDTLTRCPNQKEATLYYDECVLRYSNQNILSTLITTG 150
Query: 145 VVLVPKPQDSPNRSFDGGVSNL----MNEALSRALRTPKMFGTAKKDYSDSPTLYGLAQC 200
V++ ++ + D +S+L +N+A + AL + K FGT K +++ + YGL QC
Sbjct: 151 GVILVNTRNVTSNQLDL-LSDLVLPTLNQAATVALNSSKKFGTRKNNFTALQSFYGLVQC 209
Query: 201 TQDLSPDQCRSCLGEAISKLAGCCSIRQGGQVLYPSCITRYELSQFYNDTLIXX-----X 255
T DL+ C CL I+++ + R G +++ PSC +RYE+ FY ++ +
Sbjct: 210 TPDLTRQDCSRCLQLVINQIP---TDRIGARIINPSCTSRYEIYAFYTESAVPPPPPPPS 266
Query: 256 XXXXXXXGSERSSKGRGTKAIWIAIGTTIPLFILL 290
RS K +K + IAI I + +LL
Sbjct: 267 ISTPPVSAPPRSGKDGNSKVLVIAIVVPIIVAVLL 301
|
|
| TAIR|locus:2121651 CRK8 "cysteine-rich RLK (RECEPTOR-like protein kinase) 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121636 CRK7 "cysteine-rich RLK (RECEPTOR-like protein kinase) 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121686 CRK19 "cysteine-rich RLK (RECEPTOR-like protein kinase) 19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2115728 CRK25 "cysteine-rich RLK (RECEPTOR-like protein kinase) 25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121626 CRK23 "cysteine-rich RLK (RECEPTOR-like protein kinase) 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2077147 CRK4 "cysteine-rich RLK (RECEPTOR-like protein kinase) 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121666 EP1 "AT4G23170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2141762 CRK26 "cysteine-rich RLK (RECEPTOR-like protein kinase) 26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2141201 CRK29 "cysteine-rich RLK (RECEPTOR-like protein kinase) 29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.00110243 | hypothetical protein (675 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 357 | |||
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 3e-31 | |
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 6e-19 | |
| pfam11883 | 48 | pfam11883, DUF3403, Domain of unknown function (DU | 1e-06 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-31
Identities = 46/103 (44%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 34 SDGMNFTSNSTYQSNLKLLLSTLRSSATHGSSDKFSDGFYNATAGQDPDKVYGLFLCRGD 93
+ G T+NST++SNL LLS+L S+A + GF T+G PD VYGL CRGD
Sbjct: 8 TSGNYTTANSTFESNLNALLSSLSSNA----ASSSGKGFAAGTSGAAPDTVYGLAQCRGD 63
Query: 94 VSRETCQDCVNFAISELSKFCPVQKIAVIWYQECLLHYSNYSF 136
+S C+ C+ A+SEL + CP +K IWY C L Y +Y F
Sbjct: 64 LSASDCRSCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106
|
This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
|---|
| >gnl|CDD|221289 pfam11883, DUF3403, Domain of unknown function (DUF3403) | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 357 | |||
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.91 | |
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.89 | |
| PF11883 | 48 | DUF3403: Domain of unknown function (DUF3403); Int | 97.45 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 91.97 |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-24 Score=174.37 Aligned_cols=103 Identities=44% Similarity=0.877 Sum_probs=77.9
Q ss_pred cccCC-C-Cccc-CCCcHHHHHHHHHHHHHHHhccCCCCCCCCCCeeeeecCCCCCeEEEEEecCCCCChhhHHHHHHHH
Q 046163 30 GYYCS-D-GMNF-TSNSTYQSNLKLLLSTLRSSATHGSSDKFSDGFYNATAGQDPDKVYGLFLCRGDVSRETCQDCVNFA 106 (357)
Q Consensus 30 ~~~C~-~-~~~~-~~~s~f~~nl~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~~~~~vYgl~qC~~Dls~~~C~~Cl~~a 106 (357)
++.|+ + .++| +.+++|+++|+.||..|..+++... + .+|+++..|.++++||||+||++|+++.+|..||+.+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~--~--~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a 76 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSS--S--KGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADA 76 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-----TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhcc--c--cCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHH
Confidence 35788 3 4567 5677799999999999999987542 1 5799998887889999999999999999999999999
Q ss_pred HHHHhhhCCCCcceEEEcceeEEEEecccc
Q 046163 107 ISELSKFCPVQKIAVIWYQECLLHYSNYSF 136 (357)
Q Consensus 107 ~~~~~~~C~~~~~a~i~~~~C~lRYs~~~F 136 (357)
+..++.+|+.++||+||+++|+||||+++|
T Consensus 77 ~~~~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 77 VANISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HCCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence 999999999999999999999999999998
|
The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D. |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
|---|
| >PF11883 DUF3403: Domain of unknown function (DUF3403); InterPro: IPR021820 This functionally uncharacterised domain of around 50 amino acids is found in the C terminus of eukaryotic S-locus receptor kinase proteins | Back alignment and domain information |
|---|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 357 | ||||
| 3a2e_A | 108 | Crystal Structure Of Ginkbilobin-2, The Novel Antif | 6e-04 |
| >pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal Protein From Ginkgo Biloba Seeds Length = 108 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 357 | |||
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 7e-29 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 1e-22 |
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 357 | |||
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.95 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.94 | |
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.92 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.92 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 80.46 |
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=192.57 Aligned_cols=107 Identities=21% Similarity=0.475 Sum_probs=96.6
Q ss_pred CCCCcccccCCCCcccCCCcHHHHHHHHHHHHHHHhccCCCCCCCCCCeeeeecCC-CCCeEEEEEecCCCCChhhHHHH
Q 046163 24 GNPWRMGYYCSDGMNFTSNSTYQSNLKLLLSTLRSSATHGSSDKFSDGFYNATAGQ-DPDKVYGLFLCRGDVSRETCQDC 102 (357)
Q Consensus 24 ~~~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~-~~~~vYgl~qC~~Dls~~~C~~C 102 (357)
+++.++++.|++ ++|+++++|++||+.||..|+++++.++ .+|++...+. ++++||||+||+||+++++|+.|
T Consensus 1 A~t~~v~~~Cn~-~~~t~~s~f~~nl~~ll~~L~~~a~~s~-----~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~C 74 (108)
T 3a2e_A 1 ANTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSG-----YDYKTSRAGSGGAPTAYGRATCKQSISQSDCTAC 74 (108)
T ss_dssp CCCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTT-----SEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHH
T ss_pred CCcceeeeecCC-CccCCCChHHHHHHHHHHHHHhhCcccc-----CCceEeeccCCCCceEEEEEEEcCCCCHHHHHHH
Confidence 467889999975 6899999999999999999999987652 5677776654 45899999999999999999999
Q ss_pred HHHHHHHHhhhCCCCcceEEEcceeEEEEecccc
Q 046163 103 VNFAISELSKFCPVQKIAVIWYQECLLHYSNYSF 136 (357)
Q Consensus 103 l~~a~~~~~~~C~~~~~a~i~~~~C~lRYs~~~F 136 (357)
|+.++.+++++||+++||+||+++|+||||+++|
T Consensus 75 l~~a~~~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 75 LSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHHTTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHHHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999999999999998
|
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 357 | |||
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 83.59 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 81.44 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 81.06 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 80.84 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 80.08 |
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.59 E-value=0.31 Score=42.04 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=25.3
Q ss_pred hhhhHhhhhhccCCCCCCCHHHHHHHHhC
Q 046163 283 TIPLFILLVSVEDPADRPNMSSVAVMLAS 311 (357)
Q Consensus 283 ~v~~~~~~c~~~~~~~RP~M~~Vv~mL~~ 311 (357)
.+..++..|++.+|.+||+|.+|+++|+.
T Consensus 241 ~l~~li~~cl~~~p~~RPt~~eil~~L~~ 269 (283)
T d1mqba_ 241 AIYQLMMQCWQQERARRPKFADIVSILDK 269 (283)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCCHhHCcCHHHHHHHHHH
Confidence 35577889999999999999999999863
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|