Citrus Sinensis ID: 046252

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MAASAGNSSSTETVNSCLELISSSNHLDDLFDQSDYESEPTTPDTIRQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQTHESQEEKHFR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccEEEEEccccccccEEEEEccccHHHHHHHccHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHcEcccccccccccccccccccccccccccccccccccccccccEccEEEcccccEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccHcccccccccc
Coil and Loop (DISEMBL)
maasagnssstETVNSCLELIsssnhlddlfdqsdyesepttpdtirQKAVRskyrgvrprpwgkwtgeiknpnknTAQVWLGtfdmpedagsaydpapfqiqgqnaelnfpqthesqeekhfr
Flexible Loop (DISEMBL)
maasagnssstETVNSCLELISSSNHLDDLFDQSdyesepttpdtirqkavrskyrgvrprpwgkwtgeiknpnKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQTHESQEEKHFR
Low Complexity Region (SEG)
MAASAGNSSSTETVNSCLELISSSNHLDDLFDQSDYESEPTTPDTIRQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQTHESQEEKHFR
Disordered region (IsUnstruct)
*********************************************************VRPRPWGKWTGEIKNPNKNTAQVWLGTFD**************************************
Disordered Region (DISOPRED)
*********************************************************VRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNF*************
Disordered Region (DISEMBL)
**************NSCLELISSSNHLDDLFDQS***********IRQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFP************
Disordered Region (DISPRO)
****************************************************SKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQTHE********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASAGNSSSTETVNSCLELISSSNHLDDLFDQSDYESEPTTPDTIRQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQTHESQEEKHFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
O80338	243	Ethylene-responsive trans	yes	no	0.790	0.403	0.463	9e-19
Q8L9K1	226	Ethylene-responsive trans	no	no	0.524	0.287	0.597	3e-18
O80337	268	Ethylene-responsive trans	no	no	0.709	0.328	0.494	2e-17
P93007	218	Ethylene-responsive trans	no	no	0.806	0.458	0.422	2e-17
Q8VY90	221	Ethylene-responsive trans	no	no	0.580	0.325	0.506	6e-16
O82503	287	Ethylene-responsive trans	no	no	0.467	0.202	0.593	6e-16
Q9FKG1	241	Ethylene-responsive trans	no	no	0.467	0.240	0.586	7e-16
P42736	248	Ethylene-responsive trans	no	no	0.596	0.298	0.493	9e-16
O22259	171	Ethylene-responsive trans	no	no	0.516	0.374	0.523	2e-15
Q9LTC5	139	Ethylene-responsive trans	no	no	0.508	0.453	0.507	3e-15

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 12/110 (10%)

Query: 22  SSSNHLDDLFDQSDYESEPTTPDT-----------IRQKAVRSK-YRGVRPRPWGKWTGE 69
           +SS+ L  LFD    + EPT   T           + + AV++K YRGVR RPWGK+  E
Sbjct: 72  TSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAE 131

Query: 70  IKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQTHESQE 119
           I++P KN A+VWLGTF+  EDA  AYD A F+++G  A LNFP    S E
Sbjct: 132 IRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGE 181

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 2/67 (2%)

Query: 47  RQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQN 106
           RQK +  +YRGVR RPWGK+  EI++P KN A+VWLGT++ PEDA  AYD A FQ++G  
Sbjct: 86  RQKGM--QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSK 143

Query: 107 AELNFPQ 113
           A+LNFP 
Sbjct: 144 AKLNFPH 150

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 32  DQSDYESEPTTPDTIRQKAVRSK-YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPED 90
           D    + E T+P +    A + K YRGVR RPWGK+  EI++P KN A+VWLGTF+  ED
Sbjct: 124 DSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAED 183

Query: 91  AGSAYDPAPFQIQGQNAELNFPQTHESQE 119
           A  AYD A F+++G  A LNFP    S E
Sbjct: 184 AALAYDRAAFRMRGSRALLNFPLRVNSGE 212

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 70/123 (56%), Gaps = 23/123 (18%)

Query: 5   AGNSSSTETVNSCLELISSSNHLDDLFDQSDYESE------PTTPD------TIRQKA-- 50
           AGN    + +  C  L  S        D SD+ SE      P++ D      T+++K+  
Sbjct: 14  AGNREEKKELCCCSTLSES--------DVSDFVSELTGQPIPSSIDDQSSSLTLQEKSNS 65

Query: 51  VRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELN 110
            +  YRGVR RPWGKW  EI++PNK  A+VWLGTFD  E+A  AYD A F+ +G  A+LN
Sbjct: 66  RQRNYRGVRQRPWGKWAAEIRDPNK-AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLN 124

Query: 111 FPQ 113
           FP+
Sbjct: 125 FPE 127

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 40  PTTPDTIRQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAP 99
           PTT   +++   R  YRGVR RPWGK+  EI++PNK   +VWLGTFD   +A   YD A 
Sbjct: 58  PTTAPVVQENDQR-HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAA 116

Query: 100 FQIQGQNAELNFP 112
           F+++G  A LNFP
Sbjct: 117 FKLRGSKAILNFP 129

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82503|CRF1_ARATH Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 54  KYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFP 112
           K+RGVR RPWGKW  EI++P++   +VWLGTFD  E+A   YD A  Q++G NAELNFP
Sbjct: 86  KFRGVRQRPWGKWAAEIRDPSRRV-RVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKG1|EF104_ARATH Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 55  YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFP 112
           YRGVR RPWGK+  EI++PNK   ++WLGT+D   +AG AYD A FQ++G+ A LNFP
Sbjct: 88  YRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 39  EPTTPDTIRQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPA 98
           + T P   R++  ++ YRG+R RPWGKW  EI++P K   +VWLGTF+  E+A  AYD A
Sbjct: 65  QATEPGKRRKR--KNVYRGIRKRPWGKWAAEIRDPRKGV-RVWLGTFNTAEEAAMAYDVA 121

Query: 99  PFQIQGQNAELNFPQTH 115
             QI+G  A+LNFP  H
Sbjct: 122 AKQIRGDKAKLNFPDLH 138

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O22259|ERF71_ARATH Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 55  YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQT 114
           YRG+R RPWGKW  EI++P+K   +VWLGTF   ++A  AYD A  +I+G+ A+LNFP T
Sbjct: 50  YRGIRQRPWGKWAAEIRDPSKGV-RVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNT 108

Query: 115 HESQE 119
              +E
Sbjct: 109 QVEEE 113

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTC5|ERF98_ARATH Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 47/63 (74%)

Query: 53  SKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFP 112
           +++RGVR RPWGK+  EI++P++N A++WLGTF+  E+A  AYD A F ++G  A LNFP
Sbjct: 18  ARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFP 77

Query: 113 QTH 115
             +
Sbjct: 78  NEY 80

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
21592595	243	ethylene responsive element binding fact	0.790	0.403	0.463	3e-17
15238041	243	ethylene-responsive transcription factor	0.790	0.403	0.463	4e-17
224137164	193	AP2/ERF domain-containing transcription	0.580	0.373	0.555	8e-17
21594007	226	putative ethylene response element bindi	0.524	0.287	0.597	1e-16
15225361	226	ethylene-responsive transcription factor	0.524	0.287	0.597	1e-16
255541050	225	Ethylene-responsive transcription factor	0.580	0.32	0.527	2e-16
297824519	240	hypothetical protein ARALYDRAFT_903921 [	0.524	0.270	0.597	2e-16
356503262	187	PREDICTED: ethylene-responsive transcrip	0.475	0.315	0.627	4e-16
351723731	202	ethylene-responsive element binding prot	0.508	0.311	0.587	5e-16
255630234	187	unknown [Glycine max]	0.508	0.336	0.587	7e-16

>gi|21592595|gb|AAM64544.1| ethylene responsive element binding factor 2 (ATERF2) [Arabidopsis thaliana]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 67/110 (60%), Gaps = 12/110 (10%)

Query: 22  SSSNHLDDLFDQSDYESEPTTPDT-----------IRQKAVRSK-YRGVRPRPWGKWTGE 69
           +SS+ L  LFD    + EPT   T           + + AV++K YRGVR RPWGK+  E
Sbjct: 72  TSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAE 131

Query: 70  IKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQTHESQE 119
           I++P KN A+VWLGTF+  EDA  AYD A F+++G +A LNFP    S E
Sbjct: 132 IRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSSALLNFPLRVNSGE 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238041|ref|NP_199533.1| ethylene-responsive transcription factor 2 [Arabidopsis thaliana] gi|7531108|sp|O80338.1|EF101_ARATH RecName: Full=Ethylene-responsive transcription factor 2; Short=AtERF2; AltName: Full=Ethylene-responsive element-binding factor 2; Short=EREBP-2 gi|3434969|dbj|BAA32419.1| ethylene responsive element binding factor 2 [Arabidopsis thaliana] gi|8809604|dbj|BAA97155.1| ethylene responsive element binding factor 2 (ATERF2) [Arabidopsis thaliana] gi|51968444|dbj|BAD42914.1| ethylene responsive element binding factor 2 (ATERF2) [Arabidopsis thaliana] gi|51968600|dbj|BAD42992.1| ethylene responsive element binding factor 2 [Arabidopsis thaliana] gi|51971206|dbj|BAD44295.1| ethylene responsive element binding factor 2 (ATERF2) [Arabidopsis thaliana] gi|51971409|dbj|BAD44369.1| ethylene responsive element binding factor 2 (ATERF2) [Arabidopsis thaliana] gi|51971847|dbj|BAD44588.1| ethylene responsive element binding factor 2 (ATERF2) [Arabidopsis thaliana] gi|87116574|gb|ABD19651.1| At5g47220 [Arabidopsis thaliana] gi|332008104|gb|AED95487.1| ethylene-responsive transcription factor 2 [Arabidopsis thaliana]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 12/110 (10%)

Query: 22  SSSNHLDDLFDQSDYESEPTTPDT-----------IRQKAVRSK-YRGVRPRPWGKWTGE 69
           +SS+ L  LFD    + EPT   T           + + AV++K YRGVR RPWGK+  E
Sbjct: 72  TSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAE 131

Query: 70  IKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQTHESQE 119
           I++P KN A+VWLGTF+  EDA  AYD A F+++G  A LNFP    S E
Sbjct: 132 IRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGE 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137164|ref|XP_002327050.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835365|gb|EEE73800.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 53/72 (73%)

Query: 53  SKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFP 112
           S+YRGVR RPWGK+  EI++P KN A++WLGT++ PEDA  AYD A F+I+G  A+LNFP
Sbjct: 98  SQYRGVRRRPWGKYAAEIRDPKKNGARMWLGTYETPEDAALAYDQAAFKIRGSKAKLNFP 157

Query: 113 QTHESQEEKHFR 124
               S+E +  R
Sbjct: 158 HLIGSEEYEPVR 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594007|gb|AAM65925.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 2/67 (2%)

Query: 47  RQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQN 106
           RQK +  +YRGVR RPWGK+  EI++P KN A+VWLGT++ PEDA  AYD A FQ++G  
Sbjct: 86  RQKGM--QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSK 143

Query: 107 AELNFPQ 113
           A+LNFP 
Sbjct: 144 AKLNFPH 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225361|ref|NP_182011.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana] gi|57012834|sp|Q8L9K1.2|ERF99_ARATH RecName: Full=Ethylene-responsive transcription factor 13; Short=AtERF13; AltName: Full=Ethylene-responsive element-binding factor 13; Short=EREBP-13 gi|13272437|gb|AAK17157.1|AF325089_1 putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|13899091|gb|AAK48967.1|AF370540_1 putative ethylene response element binding protein; EREBP [Arabidopsis thaliana] gi|2344900|gb|AAC31840.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|18377440|gb|AAL66886.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|330255379|gb|AEC10473.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 2/67 (2%)

Query: 47  RQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQN 106
           RQK +  +YRGVR RPWGK+  EI++P KN A+VWLGT++ PEDA  AYD A FQ++G  
Sbjct: 86  RQKGM--QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSK 143

Query: 107 AELNFPQ 113
           A+LNFP 
Sbjct: 144 AKLNFPH 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541050|ref|XP_002511589.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548769|gb|EEF50258.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 51/72 (70%)

Query: 53  SKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFP 112
            +YRGVR RPWGK+  EI++P KN A++WLGT++ PEDA  AYD A F+++G  A+LNFP
Sbjct: 117 CQYRGVRRRPWGKYAAEIRDPKKNGARIWLGTYEKPEDAALAYDRAAFKMRGARAKLNFP 176

Query: 113 QTHESQEEKHFR 124
               S E +  R
Sbjct: 177 HLIGSDEYEPIR 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824519|ref|XP_002880142.1| hypothetical protein ARALYDRAFT_903921 [Arabidopsis lyrata subsp. lyrata] gi|297325981|gb|EFH56401.1| hypothetical protein ARALYDRAFT_903921 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 2/67 (2%)

Query: 47  RQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQN 106
           RQK +  +YRGVR RPWGK+  EI++P KN A+VWLGT++ PEDA  AYD A FQ++G  
Sbjct: 100 RQKGM--QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSK 157

Query: 107 AELNFPQ 113
           A+LNFP 
Sbjct: 158 AKLNFPH 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503262|ref|XP_003520430.1| PREDICTED: ethylene-responsive transcription factor CRF1-like [Glycine max]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query: 55  YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQ 113
           YRGVR RPWGK+  EI++PNKN+A+VWLGT+   E+AG AYD A F+I G  A+LNFP 
Sbjct: 64  YRGVRRRPWGKFAAEIRDPNKNSARVWLGTYVTEEEAGLAYDRAAFKIHGSKAKLNFPH 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723731|ref|NP_001237801.1| ethylene-responsive element binding protein 1 [Glycine max] gi|21304712|gb|AAM45475.1| ethylene-responsive element binding protein 1 [Glycine max]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 47/63 (74%)

Query: 55  YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQT 114
           YRGVR RPWGK+  EI++P KN A+VWLGT+D  E A  AYD A F+++GQ A+LNFP  
Sbjct: 77  YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAALAYDKAAFKMRGQKAKLNFPHL 136

Query: 115 HES 117
            +S
Sbjct: 137 IDS 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630234|gb|ACU15472.1| unknown [Glycine max]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 47/63 (74%)

Query: 55  YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQT 114
           YRGVR RPWGK+  EI++P KN A+VWLGT+D  E A  AYD A F+++GQ A+LNFP  
Sbjct: 77  YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAALAYDKAAFKMRGQKAKLNFPHL 136

Query: 115 HES 117
            +S
Sbjct: 137 IDS 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.516	0.283	0.606	4.6e-18
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.709	0.328	0.494	1.6e-17
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.669	0.341	0.511	1.6e-17
TAIR|locus:2183304	263	AT5G07310 [Arabidopsis thalian	0.830	0.391	0.411	2e-17
TAIR|locus:2170101	220	ERF110 "ethylene response fact	0.870	0.490	0.392	3.2e-17
TAIR|locus:2018635	192	RAP2.6 "related to AP2 6" [Ara	0.556	0.359	0.534	2.3e-16
TAIR|locus:2089368	248	EBP "ethylene-responsive eleme	0.612	0.306	0.481	2.3e-16
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.620	0.256	0.481	2.9e-16
TAIR|locus:2136078	287	CRF1 "AT4G11140" [Arabidopsis	0.556	0.240	0.541	3.7e-16
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.580	0.325	0.506	4.7e-16

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 40/66 (60%), Positives = 51/66 (77%)

Query:    47 RQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQN 106
             RQK ++  YRGVR RPWGK+  EI++P KN A+VWLGT++ PEDA  AYD A FQ++G  
Sbjct:    86 RQKGMQ--YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSK 143

Query:   107 AELNFP 112
             A+LNFP
Sbjct:   144 AKLNFP 149

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 44/89 (49%), Positives = 56/89 (62%)

Query:    32 DQSDYESEPTTPDTIRQKAVRSK-YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPED 90
             D    + E T+P +    A + K YRGVR RPWGK+  EI++P KN A+VWLGTF+  ED
Sbjct:   124 DSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAED 183

Query:    91 AGSAYDPAPFQIQGQNAELNFPQTHESQE 119
             A  AYD A F+++G  A LNFP    S E
Sbjct:   184 AALAYDRAAFRMRGSRALLNFPLRVNSGE 212

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 43/84 (51%), Positives = 56/84 (66%)

Query:    37 ESEPTTPDTIRQKAVRSK-YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAY 95
             E +P     + + AV++K YRGVR RPWGK+  EI++P KN A+VWLGTF+  EDA  AY
Sbjct:    98 EEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 157

Query:    96 DPAPFQIQGQNAELNFPQTHESQE 119
             D A F+++G  A LNFP    S E
Sbjct:   158 DIAAFRMRGSRALLNFPLRVNSGE 181

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2183304 AT5G07310 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/107 (41%), Positives = 63/107 (58%)

Query:     8 SSSTETVNSCLELISSSNHLDDLFDQSDYESEPTTPDTIRQKAVRSK-YRGVRPRPWGKW 66
             S+ T+ + +      ++ H   +++Q D    P  P T  Q  +R + YRGVR RPWGKW
Sbjct:    46 SALTQVIGNQSSSHDNNQHQPVVYNQQD--PNPPAPPTQDQGLLRKRHYRGVRQRPWGKW 103

Query:    67 TGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQ 113
               EI++P K  A+VWLGTF+  E A  AYD A  + +G  A+LNFP+
Sbjct:   104 AAEIRDPQK-AARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPE 149

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2170101 ERF110 "ethylene response factor 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 44/112 (39%), Positives = 66/112 (58%)

Query:     2 AASAGNSSSTETVNSCLELISSSNHLDDLFDQSDYESEPTTPDTIRQKAVRSKYRGVRPR 61
             ++SAG+      ++S   + SS   +D   +  +       P+  R+K  + +YRGVR R
Sbjct:    27 SSSAGHKRGWLGIDSA-PIPSSFARVDSSHNPIEESMSKAFPEEAREK--KRRYRGVRQR 83

Query:    62 PWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQ 113
             PWGKW  EI++P++  A+VWLGTFD  E A  AYD A  + +G  A+LNFP+
Sbjct:    84 PWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPE 134

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2018635 RAP2.6 "related to AP2 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 39/73 (53%), Positives = 48/73 (65%)

Query:    54 KYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQ 113
             KYRGVR RPWGKW  EI++P+K T +VWLGTF+  E A  AYD A  + +G  A+LNFP+
Sbjct:    60 KYRGVRQRPWGKWAAEIRDPHKAT-RVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPE 118

Query:   114 ---THESQEEKHF 123
                T   Q   HF
Sbjct:   119 NVGTQTIQRNSHF 131

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0034605 "cellular response to heat" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2089368 EBP "ethylene-responsive element binding protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 38/79 (48%), Positives = 52/79 (65%)

Query:    37 ESEPTTPDTIRQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYD 96
             + + T P   R++  ++ YRG+R RPWGKW  EI++P K   +VWLGTF+  E+A  AYD
Sbjct:    63 KEQATEPGKRRKR--KNVYRGIRKRPWGKWAAEIRDPRKGV-RVWLGTFNTAEEAAMAYD 119

Query:    97 PAPFQIQGQNAELNFPQTH 115
              A  QI+G  A+LNFP  H
Sbjct:   120 VAAKQIRGDKAKLNFPDLH 138

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;IMP;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0051707 "response to other organism" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0008219 "cell death" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 38/79 (48%), Positives = 52/79 (65%)

Query:    36 YESEPTTPDTIRQKAVRSK--YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGS 93
             + +E T P+  +  +   K  YRGVR RPWGK+  EI++PNK  ++VWLGTFD   +A  
Sbjct:   135 FAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAR 194

Query:    94 AYDPAPFQIQGQNAELNFP 112
             AYD A F+++G  A LNFP
Sbjct:   195 AYDEAAFRLRGSKAILNFP 213

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2136078 CRF1 "AT4G11140" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 39/72 (54%), Positives = 49/72 (68%)

Query:    41 TTPDTIRQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPF 100
             T P  +   A R K+RGVR RPWGKW  EI++P++   +VWLGTFD  E+A   YD A  
Sbjct:    75 TVPVVVTT-ATR-KFRGVRQRPWGKWAAEIRDPSRRV-RVWLGTFDTAEEAAIVYDNAAI 131

Query:   101 QIQGQNAELNFP 112
             Q++G NAELNFP
Sbjct:   132 QLRGPNAELNFP 143

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=RCA;IMP

GO:0048825 "cotyledon development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query:    40 PTTPDTIRQKAVRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAP 99
             PTT   +++   R  YRGVR RPWGK+  EI++PNK   +VWLGTFD   +A   YD A 
Sbjct:    58 PTTAPVVQENDQRH-YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAA 116

Query:   100 FQIQGQNAELNFP 112
             F+++G  A LNFP
Sbjct:   117 FKLRGSKAILNFP 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	124
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-25
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	6e-24
pfam00847	53	pfam00847, AP2, AP2 domain	3e-07

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 89.6 bits (223), Expect = 4e-25
 Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 54  KYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQ 113
           KYRGVR RPWGKW  EI++P+K   +VWLGTFD  E+A  AYD A F+ +G++A LNFP 
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGK-RVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 114 THESQ 118
           +    
Sbjct: 60  SLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 86.9 bits (216), Expect = 6e-24
 Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 53  SKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFP 112
           SKYRGVR RPWGKW  EI++P+    ++WLGTFD  E+A  AYD A  +++G +A LNFP
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGR-RIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

Query: 113 QT 114
            +
Sbjct: 60  DS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 43.8 bits (104), Expect = 3e-07
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 53 SKYRGVRPRP-WGKWTGEIKNP-NKNTAQVWLGTFDMPEDAGSAYD 96
          S Y+GVR    WG+W  EI++P  K   +  LGTF   E+A  A  
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAI 45

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.88
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.87
PHA00280	121	putative NHN endonuclease	99.71
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.31
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	82.98

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.88  E-value=4.6e-23  Score=130.32  Aligned_cols=61  Identities=56%  Similarity=1.164  Sum_probs=55.5

Q ss_pred             CceeeeeeCCCCcEEEEecCCCCCCceeecCCCCCHHHHHHhhchhhhhhcCCCCCCCCCCC
Q 046252           53 SKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQT  114 (124)
Q Consensus        53 S~yrGV~~~~~gkw~A~I~~~~k~~~~i~LG~f~t~eeAA~AyD~aa~~~~G~~a~~NFp~~  114 (124)
                      |+|+||+++++|+|+|+|+++.+++ ++|||+|+|+||||.|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk-~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGR-RIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCc-eEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899997777799999999993222 999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.87  E-value=1.8e-22  Score=128.96  Aligned_cols=64  Identities=56%  Similarity=1.138  Sum_probs=58.0

Q ss_pred             ceeeeeeCCCCcEEEEecCCCCCCceeecCCCCCHHHHHHhhchhhhhhcCCCCCCCCCCCCcch
Q 046252           54 KYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQTHESQ  118 (124)
Q Consensus        54 ~yrGV~~~~~gkw~A~I~~~~k~~~~i~LG~f~t~eeAA~AyD~aa~~~~G~~a~~NFp~~~y~~  118 (124)
                      +|+||.++++|+|+|+|+++..++ +++||+|+|+||||.|||.++++++|.++.+|||.+.|+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k-~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~~   64 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGK-RVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYDS   64 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCc-EEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCCC
Confidence            589997788899999999944433 9999999999999999999999999999999999999863

>PHA00280 putative NHN endonuclease

Probab=99.71  E-value=1.1e-17  Score=119.59  Aligned_cols=79  Identities=19%  Similarity=0.282  Sum_probs=63.6

Q ss_pred             ccccccccCCCcccccccCCCCCCCCCCCCcccccCCCCCceeee-eeCCCCcEEEEecCCCCCCceeecCCCCCHHHHH
Q 046252           14 VNSCLELISSSNHLDDLFDQSDYESEPTTPDTIRQKAVRSKYRGV-RPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAG   92 (124)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~yrGV-~~~~~gkw~A~I~~~~k~~~~i~LG~f~t~eeAA   92 (124)
                      .++.++++...+..++..+            +...+.|+|||+|| |.+..|||+|+|.+++|   +++||.|+++|+|+
T Consensus        40 ~dnri~NLr~~T~~eN~~N------------~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK---~~~lG~f~~~e~A~  104 (121)
T PHA00280         40 LNDALDNLRLALPKENSWN------------MKTPKSNTSGLKGLSWSKEREMWRGTVTAEGK---QHNFRSRDLLEVVA  104 (121)
T ss_pred             CCCcHHHhhhcCHHHHhcc------------cCCCCCCCCCCCeeEEecCCCeEEEEEEECCE---EEEcCCCCCHHHHH
Confidence            3455555555555544444            44567899999999 67788999999999999   99999999999999


Q ss_pred             HhhchhhhhhcCCCCC
Q 046252           93 SAYDPAPFQIQGQNAE  108 (124)
Q Consensus        93 ~AyD~aa~~~~G~~a~  108 (124)
                      .||+ ++.++||+||.
T Consensus       105 ~a~~-~~~~lhGeFa~  119 (121)
T PHA00280        105 WIYR-TRRELHGQFAR  119 (121)
T ss_pred             HHHH-HHHHHhhcccc
Confidence            9997 77889999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.31  E-value=1.9e-12  Score=79.87  Aligned_cols=52  Identities=29%  Similarity=0.511  Sum_probs=44.0

Q ss_pred             Cceeee-eeCCCCcEEEEecCC---CCCCceeecCCCCCHHHHHHhhchhhhhhcCC
Q 046252           53 SKYRGV-RPRPWGKWTGEIKNP---NKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQ  105 (124)
Q Consensus        53 S~yrGV-~~~~~gkw~A~I~~~---~k~~~~i~LG~f~t~eeAA~AyD~aa~~~~G~  105 (124)
                      |+|+|| +.+..++|+|+|++.   ++++ .++||.|++++||++|++.+...++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k-~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRK-RFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEE-EEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccE-EEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            789999 566789999999883   2122 999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=82.98  E-value=2.3  Score=24.84  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=27.9

Q ss_pred             cEEEEec-C---CCCCCceeecCCCCCHHHHHHhhchhhhhh
Q 046252           65 KWTGEIK-N---PNKNTAQVWLGTFDMPEDAGSAYDPAPFQI  102 (124)
Q Consensus        65 kw~A~I~-~---~~k~~~~i~LG~f~t~eeAA~AyD~aa~~~  102 (124)
                      +|..+|. .   .|+.. +++-+-|.|..||-.+...+...+
T Consensus         1 ~w~~~v~g~~~~~Gkrk-~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRK-QKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEE-EEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5777773 2   34444 889999999999999988776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-17
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-17

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 46/65 (70%)
Query: 55  YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQT 114
           YRGVR RPWGK+  EI++P KN A+VWLGTF+  EDA  AYD A F+++G  A LNFP  
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 65
Query: 115 HESQE 119
             S E
Sbjct: 66  VNSGE 70

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 44/58 (75%)
Query: 55  YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFP 112
           YRGVR RPWGK+  EI++P KN A+VWLGTF+  EDA  AYD A F+++G  A LNFP
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
1gcc_A	63	Ethylene responsive element binding factor 1; tran	9e-30

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  100 bits (252), Expect = 9e-30
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 54  KYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFP 112
            YRGVR RPWGK+  EI++P KN A+VWLGTF+  EDA  AYD A F+++G  A LNFP
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	92.93
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	90.51

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=1.5e-26  Score=147.39  Aligned_cols=61  Identities=59%  Similarity=1.113  Sum_probs=55.9

Q ss_pred             ceeeeeeCCCCcEEEEecCCCCCCceeecCCCCCHHHHHHhhchhhhhhcCCCCCCCCCCC
Q 046252           54 KYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQT  114 (124)
Q Consensus        54 ~yrGV~~~~~gkw~A~I~~~~k~~~~i~LG~f~t~eeAA~AyD~aa~~~~G~~a~~NFp~~  114 (124)
                      +|+||+++++|||+|+|+++.+++.++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999987789999999999865433999999999999999999999999999999999986

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=92.93  E-value=0.035  Score=35.88  Aligned_cols=50  Identities=12%  Similarity=0.172  Sum_probs=32.3

Q ss_pred             CCCCceeee-eeCCCCcEEEEecCCCCCCcee----ecCCC--CCHHHHHHhhchhhh
Q 046252           50 AVRSKYRGV-RPRPWGKWTGEIKNPNKNTAQV----WLGTF--DMPEDAGSAYDPAPF  100 (124)
Q Consensus        50 ~~~S~yrGV-~~~~~gkw~A~I~~~~k~~~~i----~LG~f--~t~eeAA~AyD~aa~  100 (124)
                      ...|+|+|| |....+.|.|+-..+++...+.    ++| |  +.+.+||-.|-+...
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~k~le   59 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGASRRSRTFHPKHFN-MDKEKARLAAVEFMKTVE   59 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTEEEEEEECCTTHH-HHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCeEeeeeechhhcC-cCHHHHHHHHHHHHHHHH
Confidence            468999999 7888899999999887643211    234 4  345555555544433

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=90.51  E-value=0.038  Score=39.83  Aligned_cols=39  Identities=5%  Similarity=-0.175  Sum_probs=30.3

Q ss_pred             eeeeeeCCCCcEEEEecCCCCCCceeecCCCCCHHHHHHhhch
Q 046252           55 YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDP   97 (124)
Q Consensus        55 yrGV~~~~~gkw~A~I~~~~k~~~~i~LG~f~t~eeAA~AyD~   97 (124)
                      ++||.....++|.+.|... +   .++||.|++.+|||++|..
T Consensus       109 ~~g~~~~~~~k~~~vi~~~-~---~~~~~~f~s~~eAa~~~Gv  147 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVIS-P---DGIEKEYPSTKCACEELGL  147 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEEC-T---TSCEEEESCHHHHHHHHTC
T ss_pred             eeeeeeccCCCCceEEEEc-C---CceEEeeCCHHHHHHHHCc
Confidence            4677324446789999888 5   6689999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-25

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.4 bits (222), Expect = 1e-25
 Identities = 36/59 (61%), Positives = 44/59 (74%)

Query: 54  KYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFP 112
            YRGVR RPWGK+  EI++P KN A+VWLGTF+  EDA  AYD A F+++G  A LNFP
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.6e-27  Score=150.55  Aligned_cols=61  Identities=59%  Similarity=1.113  Sum_probs=56.0

Q ss_pred             ceeeeeeCCCCcEEEEecCCCCCCceeecCCCCCHHHHHHhhchhhhhhcCCCCCCCCCCC
Q 046252           54 KYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQT  114 (124)
Q Consensus        54 ~yrGV~~~~~gkw~A~I~~~~k~~~~i~LG~f~t~eeAA~AyD~aa~~~~G~~a~~NFp~~  114 (124)
                      +||||+++++|||+|+|+++.+++.++|||+|+|+||||+|||.++++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999987788999999998766554899999999999999999999999999999999985