Citrus Sinensis ID: 046280

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MDFSNLRTNSSSVPSPTKTKRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQPPQHDDVVSSLLAVTAAAAADTNTNNNNINQLLNFSDQFSAETISGSTTYKPITSVMDAADQADDHQTYTNGDFCELPPLPPDASSSSCYYYNYHDPAAAVAGLMGNSDLGFGAWNDQTTGFDYSSSSSFSTTTTGVQYFMQGAAAAS
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHccccccccccccEEEcccccEEEEcccccccccEEccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHccccccccccccccccccccccccccccccHccHHccccHHcccccccc
Coil and Loop (DISEMBL)
mdfsnlrtnsssvpsptktkrKQQKQQQQQQQNHMRQDEirflgvrrrpwgryaaeirdpatkerhwlgtfdtAEDAALAYDRAARSmrgskartnfvysdmpagssvtsiispdhyqppqhddVVSSLLAVTAAAAadtntnnnninqllnfsdqfsaetisgsttykpitsvmdaadqaddhqtytngdfcelpplppdasssscyyynyhdpAAAVAGlmgnsdlgfgawndqttgfdysssssfstttTGVQYFMQGAAAAS
Flexible Loop (DISEMBL)
mdfsnlrtnsssvpsptktkrkQQKQQQQQqqnhmrqdeirflgvrrrpwgryaaeirdpatkerhwlgtfDTAEDAALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQPPQHDDVVSSLLAVTAAAAADTNTNNNNINQLLNFSDQFSAETISGSTTYKPITSVMDAADQADDHQTYTNGDFCELPPLPPDASSSSCYYYNYHDPAAAVAGLMGNSDLGFGAWNDQTTGFDYSSSSSFSTTTTGVQYFMQGAAAAS
Low Complexity Region (SEG)
MDFSNLRTNSSSVPSPTKTKRkqqkqqqqqqqNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTaedaalaydraarSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQPPQHDDVVSSllavtaaaaadtntnnnninqllnFSDQFSAETISGSTTYKPITSVMDAADQADDHQTYTNGDFCElpplppdassssCYYYNYHDPAAAVAGLMGNSDLGFGAWNDQttgfdysssssfsttttgVQYFMQGAAAAS
Disordered region (IsUnstruct)
***************************************IRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYD******************************************VVSSLLAVTAAAAADT***NNNINQLLNFSDQF********************************GDFCE***********SCYYYNYHDPAAAVAGLMGNSDLGFGAWNDQTTGFDY***********GVQYF********
Disordered Region (DISOPRED)
*D******************************************VRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVY********************************************************************************************FCELPPLPPDASS******************MGNSDLGFGAWNDQT***************TGVQYF*QGA****
Disordered Region (DISEMBL)
************************************QDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQPPQHDDVVSSLLAVTAAAAADTNTNNNNINQLLNFSDQFSAETISGSTTYKPITSVMDAADQADDHQTYTNGDFCELPPLPPDASSSSCYYYNYHDPAAAVAGLMGNSDLGFGAWNDQTTGFD*********TTTGVQYFMQGAAAAS
Disordered Region (DISPRO)
**************************************EIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYS*********************************************NINQLLNFSDQFSAETISGSTTYKPITSVMDAADQADDHQTYTNGDFCELPPLPPDASSSSCYYYNYHDP**AV*******D**F*******TGFDYSSSSSFSTTTTGVQYFMQGA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFSNLRTNSSSVPSPTKTKRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQPPQHDDVVSSLLAVTAAAAADTNTNNNNINQLLNFSDQFSAETISGSTTYKPITSVMDAADQADDHQTYTNGDFCELPPLPPDASSSSCYYYNYHDPAAAVAGLMGNSDLGFGAWNDQTTGFDYSSSSSFSTTTTGVQYFMQGAAAAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q9M644	211	Ethylene-responsive trans	yes	no	0.620	0.781	0.468	3e-37
Q9FZ90	245	Ethylene-responsive trans	no	no	0.687	0.746	0.462	9e-37
Q6J9Q2	348	Ethylene-responsive trans	no	no	0.278	0.212	0.712	1e-27
Q9FYK5	306	Ethylene-responsive trans	no	no	0.586	0.509	0.424	1e-25
Q3E703	219	Ethylene-responsive trans	no	no	0.454	0.552	0.429	2e-24
Q9SAD4	328	Ethylene-responsive trans	no	no	0.251	0.204	0.666	7e-23
O80340	222	Ethylene-responsive trans	no	no	0.248	0.297	0.712	7e-22
Q9FE67	200	Ethylene-responsive trans	no	no	0.229	0.305	0.737	2e-20
Q9ZWA2	245	Ethylene-responsive trans	no	no	0.293	0.318	0.576	6e-20
Q40477	225	Ethylene-responsive trans	N/A	no	0.221	0.262	0.728	8e-20

>sp|Q9M644|LEP_ARATH Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 111/192 (57%), Gaps = 27/192 (14%)

Query: 17  TKTKRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAED 76
           +K+K+KQ  Q              RFLGVRRRPWGRYAAEIRDP TKERHWLGTFDTAE+
Sbjct: 6   SKSKKKQDDQVG-----------TRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEE 54

Query: 77  AALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQPPQHDDVVSSLLAVTAAA 136
           AALAYDRAARSMRG++ARTNFVYSDMP  SSVTSI+               S        
Sbjct: 55  AALAYDRAARSMRGTRARTNFVYSDMPPSSSVTSIV---------------SPDDPPPPP 99

Query: 137 AADTNTNNNNINQLLNFSDQFSAETISGSTTYKPITSVMDAADQADDHQTYTNGDFCELP 196
                 +N+ ++ ++ F+   S ++         + S M    Q+ +   Y+N    ELP
Sbjct: 100 PPPAPPSNDPVDYMMMFNQYSSTDSPMLQPHCDQVDSYMFGGSQSSNSYCYSNDSSNELP 159

Query: 197 PLPPDASSSSCY 208
           PLP D  S+SCY
Sbjct: 160 PLPSDL-SNSCY 170

Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ90|ERF87_ARATH Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1

 Score =  153 bits (387), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 127/216 (58%), Gaps = 33/216 (15%)

Query: 1   MDFSNLRTNSSSVPSPTKTKRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDP 60
           M+F N   N+ S     K+ R++Q+Q Q Q Q H+  +EI+++GVRRRPWGRYAAEIR+P
Sbjct: 1   MEF-NGNLNAGSCSRSKKSHRQKQQQPQPQPQQHI--EEIKYVGVRRRPWGRYAAEIRNP 57

Query: 61  ATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPDH---- 116
            TKER+WLGTFDTAE+AALAYDRAARS+RG  ARTNFVYSDMP GSSVTS +SPD     
Sbjct: 58  TTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYSDMPRGSSVTSFVSPDESQRF 117

Query: 117 ----YQPPQHDDVVSSLLAVTAAAAADTNTNNNNINQLLNFSDQFSAETISGSTTYKPIT 172
               + PP   +  +S         + TN  N N    + FS  ++         Y+ IT
Sbjct: 118 ISELFNPPSQLEATNSNNNNNNNLYSSTNNQNQNS---IEFS--YNGWPQEAECGYQSIT 172

Query: 173 SVMDAADQADDHQTYTNGDFCELPPLPPDASSSSCY 208
           S  +  D              ELPPLPP    S+C+
Sbjct: 173 SNAEHCDH-------------ELPPLPP----STCF 191

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J9Q2|ERF86_ARATH Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 65/80 (81%), Gaps = 6/80 (7%)

Query: 41  RFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYS 100
           RFLGVRRRPWGRYAAEIRDP TKERHWLGTFDTA +AALAYDRAA SMRG++ARTNFVY+
Sbjct: 54  RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVYT 113

Query: 101 DMPAGSSVTS------IISP 114
                + +T+      I+SP
Sbjct: 114 PTDVHTILTNPNLHSLIVSP 133

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYK5|ESR2_ARATH Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 105/198 (53%), Gaps = 42/198 (21%)

Query: 40  IRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVY 99
           IR+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAE+AA AYD AAR+MRG KARTNFVY
Sbjct: 56  IRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY 115

Query: 100 SDMPAGSSVTSIISPDHYQPPQHDDVVSSLLAVTAAAAADTNTNNNNINQLLNFSDQFSA 159
             MP         S D Y    H  + SS                  +N  L   D  ++
Sbjct: 116 P-MP---------SLDSY----HHRIFSS----------------PPMNMFL-LRDVLNS 144

Query: 160 ETISGSTTYK-PITSVMDAADQADDHQTYTN-GDFCELPPLPPDASSSSC-----YYYNY 212
           +++S  TT+  P  ++ +  D    H+++TN  D CE   L P A  SS         N 
Sbjct: 145 QSLSPLTTFAYPPCNLSNVNDVV--HESFTNVNDVCE--DLSPKAKRSSTIENESLISNI 200

Query: 213 HDPAAAVAGLMGNSDLGF 230
            +P  A +GL+     GF
Sbjct: 201 FEPEPASSGLLQEIVQGF 218

Required for correct embryo patterning and cotyledon organogenesis. May regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E703|ERF88_ARATH Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF088 PE=2 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/149 (42%), Positives = 88/149 (59%), Gaps = 28/149 (18%)

Query: 13  VPSPTKTKRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFD 72
           + S  K K K++K+ Q          E ++LGVRRRPWGRYAAEIR+P TKERHWLGTFD
Sbjct: 2   LKSSNKRKSKEEKKLQ----------EGKYLGVRRRPWGRYAAEIRNPFTKERHWLGTFD 51

Query: 73  TAEDAALAYDRAARSMRGSKARTNFVYSD---------------MPAGSSVTSIISPDHY 117
           TAE+AA AYD AARS+ GS A TNF Y++               M  GSS   ++     
Sbjct: 52  TAEEAAFAYDVAARSISGSLATTNFFYTENTSLERHPQQSLEPHMTWGSSSLCLLQD--- 108

Query: 118 QPPQHDDVVSSLLAVTAAAAADTNTNNNN 146
           QP +++  V+  ++ + +   +++TN  N
Sbjct: 109 QPFENNHFVADPISSSFSQKQESSTNLTN 137

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAD4|ESR1_ARATH Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1

 Score =  107 bits (268), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 57/75 (76%), Gaps = 8/75 (10%)

Query: 41  RFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYS 100
           R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAE AA AYD AAR+ RG+KARTNF Y 
Sbjct: 56  RYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYP 115

Query: 101 DMPAGSSVTSIISPD 115
                   T++I P+
Sbjct: 116 --------TAVIMPE 122

Regulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryon patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score =  104 bits (259), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 52/66 (78%)

Query: 32 QNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGS 91
          Q H    EIR+ GVR+RPWGRYAAEIRDP  K R WLGTFDTAE+AA AYD AAR  RG+
Sbjct: 15 QTHNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGA 74

Query: 92 KARTNF 97
          KA+TNF
Sbjct: 75 KAKTNF 80

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE67|ERF80_ARATH Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 50/61 (81%)

Query: 37 QDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTN 96
          + E+ F GVR+RPWGRYAAEIRDP  K R WLGTFDTAE+AA AYD AAR  RGSKA+TN
Sbjct: 28 RKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTN 87

Query: 97 F 97
          F
Sbjct: 88 F 88

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA2|ERF77_ARATH Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 53/78 (67%)

Query: 20  KRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAAL 79
           KRK   +         +  E+R+ GVRRRPWGRYAAEIRDP  K+R WLG+F+T E+AA 
Sbjct: 31  KRKNVTKALAVNDGGEKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAAR 90

Query: 80  AYDRAARSMRGSKARTNF 97
           AYD AA   RGSKA TNF
Sbjct: 91  AYDSAAIRFRGSKATTNF 108

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40477|ERF4_TOBAC Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 48/59 (81%)

Query: 39 EIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNF 97
          E+ + GVR+RPWGRYAAEIRDP  K R WLGTFDTAE+AA AYD AAR  RG KA+TNF
Sbjct: 24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
449517030	240	PREDICTED: ethylene-responsive transcrip	0.751	0.833	0.498	4e-45
224053587	294	AP2/ERF domain-containing transcription	0.808	0.731	0.526	4e-45
255543240	278	DNA binding protein, putative [Ricinus c	0.763	0.730	0.477	3e-44
449469236	227	PREDICTED: ethylene-responsive transcrip	0.646	0.757	0.512	5e-43
224075437	295	AP2/ERF domain-containing transcription	0.778	0.701	0.482	5e-42
225443494	266	PREDICTED: ethylene-responsive transcrip	0.657	0.657	0.484	3e-40
255644774	274	unknown [Glycine max]	0.781	0.759	0.472	5e-39
356498625	274	PREDICTED: ethylene-responsive transcrip	0.781	0.759	0.472	5e-39
224074165	216	AP2/ERF domain-containing transcription	0.364	0.449	0.794	6e-39
356559504	274	PREDICTED: ethylene-responsive transcrip	0.759	0.737	0.472	2e-36

>gi|449517030|ref|XP_004165549.1| PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis sativus]

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 132/265 (49%), Positives = 157/265 (59%), Gaps = 65/265 (24%)

Query: 5   NLRTNSSSVPSPTKTKRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKE 64
           NL+TNS  +P P K +    K +QQ  Q  ++Q+  RFLGVRRRPWGRYAAEIRDP+TKE
Sbjct: 18  NLQTNSL-LPPPLKPR----KSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKE 72

Query: 65  RHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQ--PPQH 122
           RHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMP GSSVTSIISPD  Q  PP  
Sbjct: 73  RHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPP-- 130

Query: 123 DDVVSSLLAVTAAAAADTNTNNNNINQLLNFSDQFSAETISG------STTYKPITSVMD 176
                            T T  N++       D F+  +  G      S +Y+P+T+ MD
Sbjct: 131 -----------------TPTQPNHLC-----FDPFTTSSFPGNDWLPDSDSYQPVTAFMD 168

Query: 177 AADQADDHQTYTNGDFCELPPLPPDASSSSCYYYNYHDPAAAV----------AGLMG-N 225
                DD          ELPPLPPDASSS      Y+D AA V          +  MG N
Sbjct: 169 NGITNDD---------AELPPLPPDASSS------YNDCAAMVDWSTASSSSTSSFMGFN 213

Query: 226 SDLGFGAWNDQTT--GFDYSSSSSF 248
           S+  F ++ D +T  GF + SSS++
Sbjct: 214 SNAVFPSFPDTSTSDGFGFGSSSTY 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053587|ref|XP_002297886.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222845144|gb|EEE82691.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 137/260 (52%), Positives = 159/260 (61%), Gaps = 45/260 (17%)

Query: 1   MDFS-NLRTNSSSVPSPTKTKRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRD 59
           MDF+ + +TNSS  PSP+KTKRKQQ+QQQQQQQ    Q E+RFLGVRRRPWGRYAAEIRD
Sbjct: 1   MDFTYSTKTNSS--PSPSKTKRKQQQQQQQQQQ--QEQQEVRFLGVRRRPWGRYAAEIRD 56

Query: 60  PATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQ- 118
           P+TKERHWLGTFDTAE+AALAYDRAARSMRGSKARTNFVYSDMP  SSVT IISPD  Q 
Sbjct: 57  PSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPPASSVTCIISPDESQH 116

Query: 119 --------PPQH----DDVVSSLLAVTA-----AAAADTNTNNNNINQLLNFSDQFSAET 161
                   PPQH    +D     L  +       A A  N+N+N +     +   F A  
Sbjct: 117 DNSALFAPPPQHNTHQNDTNCQQLYFSQDQQPFNAHAYGNSNSNWLAGGAGWVQGFGAGA 176

Query: 162 ISGST-TYKPITSVMDAADQADDHQTYTNGDFCELPPLPPDASSSSCYYYNYHDPAAAVA 220
             G   +Y+P ++   + D A      +N D  ELPPLPPD  +SSCY            
Sbjct: 177 GDGPCGSYEPNSA--GSLDVASGLNYLSNTDNIELPPLPPDV-NSSCY------------ 221

Query: 221 GLMGNSDLGFGAWNDQTTGF 240
                 D+G   WND  TGF
Sbjct: 222 ----GCDMGREFWND--TGF 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543240|ref|XP_002512683.1| DNA binding protein, putative [Ricinus communis] gi|223548644|gb|EEF50135.1| DNA binding protein, putative [Ricinus communis]

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/262 (47%), Positives = 148/262 (56%), Gaps = 59/262 (22%)

Query: 18  KTKRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDA 77
           KTKRKQQ+Q  Q  Q+     ++RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+A
Sbjct: 15  KTKRKQQQQNDQSDQHQ----QVRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEA 70

Query: 78  ALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQPPQHDDVVSSLLAVTAAAA 137
           ALAYDRAARSMRG KARTNFVYSDMP GSSVTSIISPD  Q   H         ++A  A
Sbjct: 71  ALAYDRAARSMRGFKARTNFVYSDMPGGSSVTSIISPDESQ--HH---------ISALFA 119

Query: 138 ADTNTNNNNINQLLNFSDQ--------FSAETISGSTT---------------YKPITSV 174
                + N+ NQ L F+ Q        F     SG  T               ++P+T+ 
Sbjct: 120 PPCQYSQNDTNQQLLFTAQDCTFNESSFRYANNSGFVTGGGEGWIPGAVAAGSFQPVTAS 179

Query: 175 MDAADQADDHQTYTNGDFCELPPLPPDASSSSCYYYNYHDPAAAVAGLMGNSDLGFGAWN 234
           M A D ++   T    +  ELPPLPPD ++SSCY                 SDLG   WN
Sbjct: 180 MAAGDGSNHCST----NDIELPPLPPDFTTSSCY----------------GSDLGHELWN 219

Query: 235 DQTT-GFDYSSSSSFSTTTTGV 255
           D    GF    ++    T+TG 
Sbjct: 220 DTALFGFSQEPTNGPDPTSTGT 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469236|ref|XP_004152327.1| PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis sativus]

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/232 (51%), Positives = 138/232 (59%), Gaps = 60/232 (25%)

Query: 38  DEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNF 97
           +  RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNF
Sbjct: 33  EPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNF 92

Query: 98  VYSDMPAGSSVTSIISPDHYQ--PPQHDDVVSSLLAVTAAAAADTNTNNNNINQLLNFSD 155
           VYSDMP GSSVTSIISPD  Q  PP                   T T  N++       D
Sbjct: 93  VYSDMPHGSSVTSIISPDESQLYPP-------------------TPTQPNHLC-----FD 128

Query: 156 QFSAETISG------STTYKPITSVMDAADQADDHQTYTNGDFCELPPLPPDASSSSCYY 209
            F+  +  G      S +Y+P+T+ MD     DD          ELPPLPPDASSS    
Sbjct: 129 PFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDD---------AELPPLPPDASSS---- 175

Query: 210 YNYHDPAAAV----------AGLMG-NSDLGFGAWNDQTT--GFDYSSSSSF 248
             Y+D AA V          +  MG NS+  F ++ D +T  GF + SSS++
Sbjct: 176 --YNDCAAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTY 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075437|ref|XP_002304632.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222842064|gb|EEE79611.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/261 (48%), Positives = 155/261 (59%), Gaps = 54/261 (20%)

Query: 1   MDFSNLRTNSSSVPSPTKTKRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDP 60
           MDF+   T ++S PSP+K KRKQQ+QQQ+ Q    +  E+RFLGVRRRPWGRYAAEIRDP
Sbjct: 1   MDFTQ-STKTNSTPSPSKNKRKQQQQQQKNQNQQEQH-EVRFLGVRRRPWGRYAAEIRDP 58

Query: 61  ATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQPP 120
           +TKERHWLGTFDTAE+AALAYDRAARSMRGSKARTNFVYSDMP  SSVTSIISPD     
Sbjct: 59  STKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPPASSVTSIISPDE---S 115

Query: 121 QHDDVVSSLLAVTAAAAADTNTNNNNINQLLNFSDQF----------SAETISGS----- 165
           QHD  +S+L A      A  + N+ N  +L    DQ+          ++  ++G      
Sbjct: 116 QHD--ISALFAPPPQNHA--HQNDTNCQKLFFSQDQYPFNAYAYGNSNSNLLTGGEGWVQ 171

Query: 166 -----------TTYKPITSVMDAADQADDHQTYTNGDFCELPPLPPDASSSSCYYYNYHD 214
                       +Y+P  +   +   A +   ++N D  ELPPLPPD  +SSCY      
Sbjct: 172 GCGAGAADGPGGSYEPNNA--GSFGVATEPIYFSNKDNIELPPLPPDV-NSSCY------ 222

Query: 215 PAAAVAGLMGNSDLGFGAWND 235
                      SD+  G WND
Sbjct: 223 ----------GSDMDHGFWND 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443494|ref|XP_002270612.1| PREDICTED: ethylene-responsive transcription factor ERF087-like [Vitis vinifera]

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/227 (48%), Positives = 130/227 (57%), Gaps = 52/227 (22%)

Query: 41  RFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYS 100
           +FLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+AALAYDRAARSMRG +ARTNFVYS
Sbjct: 34  KFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGVRARTNFVYS 93

Query: 101 DMPAGSSVTSIISPDHYQPPQHDDVVSSLLAVTAAAAADTNTNNNNINQLLNFSD----- 155
           DMP GSSVT+IISPD  Q    +D+ +  +             NN  NQL+   D     
Sbjct: 94  DMPPGSSVTTIISPDESQ----NDISALFIP---------PQQNNPTNQLVFSQDPVNAC 140

Query: 156 QFSAETISGSTTYKPITSVMDAADQA------DDHQTYT-NGDFCELPPLPPDASSSSCY 208
           QF +E  SG+  + P  SV     QA          +Y  +G+  +LPPLPPD S+ S  
Sbjct: 141 QFPSE-FSGAGGWVP-GSVTGGFQQAVTGVIGGSGVSYQFSGEDTQLPPLPPDISTPSF- 197

Query: 209 YYNYHDPAAAVAGLMGNSDLGFGAWN--------DQTTGFDYSSSSS 247
                            SD+G G WN        +QTTG D  S  S
Sbjct: 198 ----------------GSDMGQGVWNEASFLGFSEQTTGLDLVSGGS 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644774|gb|ACU22889.1| unknown [Glycine max]

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 134/235 (57%), Gaps = 27/235 (11%)

Query: 27  QQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAAR 86
           Q   QQ+H      R+LGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+AALAYDRAAR
Sbjct: 17  QTTTQQDHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAAR 76

Query: 87  SMRGSKARTNFVYSDMPAGSSVTSIISPDHY---QPPQHDDVVSSLLAVTAAAAADTN-- 141
           SMRGS+ARTNFVY D P GSSVTSI+SPD     Q  Q  + +SSL      A  D N  
Sbjct: 77  SMRGSRARTNFVYPDTPPGSSVTSILSPDEQTQTQIHQAQEELSSLFNPNPFAQPDPNPH 136

Query: 142 ---TNNNNINQLLNFSDQFSAETI--SGSTTYKPITSVMDAADQADDHQTYTNGDFCELP 196
                 + +     FS   + E I  SG  +Y    +    + ++   + + +G+  ELP
Sbjct: 137 FSLCGYSGVTNTPTFS---ATEEIAPSGGYSYNYGYTEGGTSMESSHFKLFDDGE-TELP 192

Query: 197 PLPPDASSSSCYYYNYHDPAAAVAGLMGN----SDLGFGAWNDQTTGFDYSSSSS 247
           PLPPD +SS  Y            G  GN    SD  FGA N   +G+ YS   S
Sbjct: 193 PLPPDITSSMGY--------EMGNGFYGNDAGFSDPSFGA-NATGSGYPYSGFGS 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498625|ref|XP_003518150.1| PREDICTED: ethylene-responsive transcription factor LEP-like [Glycine max]

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 134/235 (57%), Gaps = 27/235 (11%)

Query: 27  QQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAAR 86
           Q   QQ+H      R+LGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+AALAYDRAAR
Sbjct: 17  QTTTQQDHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAAR 76

Query: 87  SMRGSKARTNFVYSDMPAGSSVTSIISPDHY---QPPQHDDVVSSLLAVTAAAAADTN-- 141
           SMRGS+ARTNFVY D P GSSVTSI+SPD     Q  Q  + +SSL      A  D N  
Sbjct: 77  SMRGSRARTNFVYPDTPPGSSVTSILSPDEQTQTQIHQAQEELSSLFNPNPFAQPDPNPH 136

Query: 142 ---TNNNNINQLLNFSDQFSAETI--SGSTTYKPITSVMDAADQADDHQTYTNGDFCELP 196
                 + +     FS   + E I  SG  +Y    +    + ++   + + +G+  ELP
Sbjct: 137 FSLCGYSGVTNTPTFS---ATEEIAPSGGYSYNYGYTEGGTSMESSHFKLFDDGE-TELP 192

Query: 197 PLPPDASSSSCYYYNYHDPAAAVAGLMGN----SDLGFGAWNDQTTGFDYSSSSS 247
           PLPPD +SS  Y            G  GN    SD  FGA N   +G+ YS   S
Sbjct: 193 PLPPDITSSMGY--------EMGNGFYGNDAGFSDPSFGA-NATGSGYPYSGFGS 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074165|ref|XP_002304282.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222841714|gb|EEE79261.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 89/102 (87%), Gaps = 5/102 (4%)

Query: 14  PSPTKTKRKQQKQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDT 73
           PS +K+KRKQ +Q QQ+         +RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDT
Sbjct: 3   PSSSKSKRKQPQQVQQEPGT-----GLRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDT 57

Query: 74  AEDAALAYDRAARSMRGSKARTNFVYSDMPAGSSVTSIISPD 115
           AE+AALAYDRAARSMRG +ARTNFVYSDMPAGSSVTSIISPD
Sbjct: 58  AEEAALAYDRAARSMRGPRARTNFVYSDMPAGSSVTSIISPD 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559504|ref|XP_003548039.1| PREDICTED: ethylene-responsive transcription factor LEP-like [Glycine max]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/233 (47%), Positives = 134/233 (57%), Gaps = 31/233 (13%)

Query: 31  QQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRG 90
           QQ+H      R+LGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+AALAYD+AARSMRG
Sbjct: 21  QQDHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDKAARSMRG 80

Query: 91  SKARTNFVYSDMPAGSSVTSIISPDHY---QPPQHDDVVSSLLAVTAAAAADTNTNNNNI 147
           S+ARTNF+Y D P GSSVTSI+SPD     Q  Q  + +SSL         D N   +  
Sbjct: 81  SRARTNFIYPDTPPGSSVTSILSPDEQTQTQIHQAQEELSSLFNPNPFPQPDPNPQFS-- 138

Query: 148 NQLLNFSD-----QFSA-ETISGSTTYKPITSVMDAAD--QADDHQTYTNGDFCELPPLP 199
             L  FS       FSA E I+ S  Y       +     ++   + + +G+  +LPPLP
Sbjct: 139 --LCGFSGIPNTPTFSATEEIASSGGYSYSYGYTEGGTGVESSHFKLFDDGE-TQLPPLP 195

Query: 200 PDASSSSCYYYNYHDPAAAVAGLMGNSDLGF-----GAWNDQTTGFDYSSSSS 247
           PD +SS  Y            GL GN D+GF     GA N   +G+ YS   S
Sbjct: 196 PDITSSMGY--------EMSNGLYGN-DVGFSDPSCGA-NASGSGYPYSGFES 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2159068	211	LEP "LEAFY PETIOLE" [Arabidops	0.319	0.402	0.678	8.2e-28
TAIR|locus:2010529	245	AT1G28160 [Arabidopsis thalian	0.432	0.469	0.516	8.4e-26
TAIR|locus:2182993	348	PUCHI [Arabidopsis thaliana (t	0.263	0.201	0.628	3.7e-22
TAIR|locus:2024076	306	DRNL "DORNROSCHEN-like" [Arabi	0.240	0.209	0.646	1.2e-17
TAIR|locus:2116224	268	RRTF1 "redox responsive transc	0.270	0.268	0.432	9.8e-17
TAIR|locus:2010346	219	AT1G12890 [Arabidopsis thalian	0.236	0.287	0.603	1.8e-16
TAIR|locus:2031890	328	ESR1 "ENHANCER OF SHOOT REGENE	0.221	0.179	0.627	2.7e-16
TAIR|locus:2092339	244	ERF7 "ethylene response factor	0.308	0.336	0.428	4.1e-16
TAIR|locus:2009655	185	ERF8 "ethylene response factor	0.312	0.448	0.488	1.3e-15
TAIR|locus:2087065	222	ERF4 "ethylene responsive elem	0.240	0.288	0.562	2e-15

TAIR|locus:2159068 LEP "LEAFY PETIOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 59/87 (67%), Positives = 65/87 (74%)

Query:    36 RQDEI--RFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXSMRGSKA 93
             + D++  RFLGVRRRPWGRYAAEIRDP TKERHWLGTFDT             SMRG++A
Sbjct:    12 QDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRA 71

Query:    94 RTNFVYSDMPAGSSVTSIISPDHYQPP 120
             RTNFVYSDMP  SSVTSI+SPD   PP
Sbjct:    72 RTNFVYSDMPPSSSVTSIVSPDDPPPP 98

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0010030 "positive regulation of seed germination" evidence=IMP

TAIR|locus:2010529 AT1G28160 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 61/118 (51%), Positives = 73/118 (61%)

Query:     1 MDFSNLRTNSSSVPSPTKTKRXXXXXXXXXXXNHMRQDEIRFLGVRRRPWGRYAAEIRDP 60
             M+F N   N+ S     K+ R            H+  +EI+++GVRRRPWGRYAAEIR+P
Sbjct:     1 MEF-NGNLNAGSCSRSKKSHRQKQQQPQPQPQQHI--EEIKYVGVRRRPWGRYAAEIRNP 57

Query:    61 ATKERHWLGTFDTXXXXXXXXXXXXXSMRGSKARTNFVYSDMPAGSSVTSIISPDHYQ 118
              TKER+WLGTFDT             S+RG  ARTNFVYSDMP GSSVTS +SPD  Q
Sbjct:    58 TTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYSDMPRGSSVTSFVSPDESQ 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2182993 PUCHI [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 44/70 (62%), Positives = 50/70 (71%)

Query:    41 RFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXSMRGSKARTNFVYS 100
             RFLGVRRRPWGRYAAEIRDP TKERHWLGTFDT             SMRG++ARTNFVY+
Sbjct:    54 RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVYT 113

Query:   101 DMPAGSSVTS 110
                  + +T+
Sbjct:   114 PTDVHTILTN 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009908 "flower development" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0010432 "bract development" evidence=IGI;IMP

GO:0010451 "floral meristem growth" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IGI;IMP

TAIR|locus:2024076 DRNL "DORNROSCHEN-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 42/65 (64%), Positives = 46/65 (70%)

Query:    40 IRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXSMRGSKARTNFVY 99
             IR+ GVRRRPWGRYAAEIRDP +KER WLGTFDT             +MRG KARTNFVY
Sbjct:    56 IRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY 115

Query:   100 SDMPA 104
               MP+
Sbjct:   116 P-MPS 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

TAIR|locus:2116224 RRTF1 "redox responsive transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 9.8e-17, Sum P(3) = 9.8e-17
 Identities = 32/74 (43%), Positives = 43/74 (58%)

Query:    42 FLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXSMRGSKARTNFVYSD 101
             + GVR+RPWG++AAEIRDP    R WLGTF+T               RG +A+ NF + D
Sbjct:   136 YRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVD 195

Query:   102 MPAGSSVTSIISPD 115
                 SSV+S ++ D
Sbjct:   196 YT--SSVSSPVAAD 207

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2010346 AT1G12890 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 38/63 (60%), Positives = 44/63 (69%)

Query:    39 EIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXSMRGSKARTNFV 98
             E ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDT             S+ GS A TNF 
Sbjct:    18 EGKYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAAFAYDVAARSISGSLATTNFF 77

Query:    99 YSD 101
             Y++
Sbjct:    78 YTE 80

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2031890 ESR1 "ENHANCER OF SHOOT REGENERATION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 2.7e-16, P = 2.7e-16
 Identities = 37/59 (62%), Positives = 41/59 (69%)

Query:    41 RFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXSMRGSKARTNFVY 99
             R+ GVRRRPWGRYAAEIRDP +KER WLGTFDT             + RG+KARTNF Y
Sbjct:    56 RYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTY 114

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0010084 "specification of organ axis polarity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2092339 ERF7 "ethylene response factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
 Identities = 36/84 (42%), Positives = 48/84 (57%)

Query:    39 EIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXSMRGSKARTNFV 98
             E R+ GVR+RPWGR+AAEIRDP  K R WLGTFD+             ++RG KA+TNF 
Sbjct:    24 EPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83

Query:    99 YSDMPAG--SSVTSIISPDHYQPP 120
                 P+     +T + + +   PP
Sbjct:    84 IDCSPSSPLQPLTYLHNQNLCSPP 107

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2009655 ERF8 "ethylene response factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/88 (48%), Positives = 49/88 (55%)

Query:    39 EIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXSMRGSKARTNF- 97
             EIR+ GVR+RPWGRYAAEIRDP  K R WLGTFDT               RG KA+TNF 
Sbjct:    28 EIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFG 87

Query:    98 -VYSDMPAGSSVTSIISPD--HYQPPQH 122
              +    P  SS T + SP    +  P H
Sbjct:    88 VIVGSSPTQSS-TVVDSPTAARFITPPH 114

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2087065 ERF4 "ethylene responsive element binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 36/64 (56%), Positives = 40/64 (62%)

Query:    34 HMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTXXXXXXXXXXXXXSMRGSKA 93
             H    EIR+ GVR+RPWGRYAAEIRDP  K R WLGTFDT               RG+KA
Sbjct:    17 HNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKA 76

Query:    94 RTNF 97
             +TNF
Sbjct:    77 KTNF 80

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0016604 "nuclear body" evidence=IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-28
pfam00847	53	pfam00847, AP2, AP2 domain	1e-13

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  110 bits (278), Expect = 2e-31
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query: 41  RFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYS 100
           ++ GVR+RPWG++ AEIRDP+  +R WLGTFDTAE+AA AYDRAA   RG  AR NF  S
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 101 D 101
            
Sbjct: 61  L 61

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  102 bits (256), Expect = 3e-28
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query: 41 RFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNF 97
          ++ GVR+RPWG++ AEIRDP+   R WLGTFDTAE+AA AYDRAA  +RGS A  NF
Sbjct: 2  KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 41 RFLGVRRRP-WGRYAAEIRDPAT--KERHWLGTFDTAEDAALAYDRAARSMRG 90
           + GVR    WGR+ AEIRDP    K+R  LGTF T E+AA A   A   +RG
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.83
PHA00280	121	putative NHN endonuclease	99.64
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.17
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	84.77

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=8.4e-21  Score=139.46  Aligned_cols=63  Identities=60%  Similarity=1.007  Sum_probs=60.6

Q ss_pred             ceeeEEeCCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 046280           41 RFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMP  103 (266)
Q Consensus        41 ~yrGV~~r~~GKW~A~I~~~~~~kri~LGtF~T~EEAA~AYD~Aa~~~~G~~A~tNFp~s~y~  103 (266)
                      +|+||+++++|||+|+|+++.+++++|||+|+|+||||+|||.++++++|.++++||+.++|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999988999999999988999999999999999999999999999999999999999885

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.83  E-value=1.2e-20  Score=137.01  Aligned_cols=61  Identities=62%  Similarity=1.025  Sum_probs=57.3

Q ss_pred             CceeeEEeCCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 046280           40 IRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYS  100 (266)
Q Consensus        40 S~yrGV~~r~~GKW~A~I~~~~~~kri~LGtF~T~EEAA~AYD~Aa~~~~G~~A~tNFp~s  100 (266)
                      |+||||+++++|||+|+|+++..||++|||+|+|+||||+|||+++++++|.++++|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988999999999955599999999999999999999999999999999999864

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.64  E-value=3.6e-16  Score=129.54  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             hhhHHHHHHHHhhccCCCCCCceeeEEeCC-CCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHhcCCCCC
Q 046280           20 KRKQQKQQQQQQQNHMRQDEIRFLGVRRRP-WGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSMRGSKAR   94 (266)
Q Consensus        20 ~~~~~~~qn~~n~~~~~~~tS~yrGV~~r~-~GKW~A~I~~~~~~kri~LGtF~T~EEAA~AYD~Aa~~~~G~~A~   94 (266)
                      .+-....||.+|+++++.|+|+|+||++++ .|||+|+|++  +||+++||.|+++|+|+.||+ +++++||++|+
T Consensus        47 Lr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         47 LRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            344556799999999999999999999876 7999999998  999999999999999999997 78899999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.17  E-value=4.1e-11  Score=84.84  Aligned_cols=52  Identities=29%  Similarity=0.404  Sum_probs=45.8

Q ss_pred             CceeeEEeCC-CCcEEEEEecCCC---CceEeccCCCCHHHHHHHHHHHHHHhcCC
Q 046280           40 IRFLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEDAALAYDRAARSMRGS   91 (266)
Q Consensus        40 S~yrGV~~r~-~GKW~A~I~~~~~---~kri~LGtF~T~EEAA~AYD~Aa~~~~G~   91 (266)
                      |+|+||++++ .++|+|+|++...   +|+++||.|+++|||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999876 7999999998422   49999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=84.77  E-value=3.2  Score=28.42  Aligned_cols=38  Identities=16%  Similarity=0.202  Sum_probs=29.4

Q ss_pred             cEEEEEe--cCCCC--ceEeccCCCCHHHHHHHHHHHHHHhc
Q 046280           52 RYAAEIR--DPATK--ERHWLGTFDTAEDAALAYDRAARSMR   89 (266)
Q Consensus        52 KW~A~I~--~~~~~--kri~LGtF~T~EEAA~AYD~Aa~~~~   89 (266)
                      +|..+|.  .+..|  ++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  44355  56888999999999999988777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-09
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-09

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 42 FLGVRRRPWGRYAAEIRDPATK-ERHWLGTFDTXXXXXXXXXXXXXSMRGSKARTNF 97
          + GVR+RPWG++AAEIRDPA    R WLGTF+T              MRGS+A  NF
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 42 FLGVRRRPWGRYAAEIRDPATK-ERHWLGTFDTXXXXXXXXXXXXXSMRGSKARTNF 97
          + GVR+RPWG++AAEIRDPA    R WLGTF+T              MRGS+A  NF
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
1gcc_A	63	Ethylene responsive element binding factor 1; tran	6e-35

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  118 bits (299), Expect = 6e-35
 Identities = 41/58 (70%), Positives = 47/58 (81%), Gaps = 1/58 (1%)

Query: 41 RFLGVRRRPWGRYAAEIRDPATK-ERHWLGTFDTAEDAALAYDRAARSMRGSKARTNF 97
           + GVR+RPWG++AAEIRDPA    R WLGTF+TAEDAALAYDRAA  MRGS+A  NF
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.89
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	94.53
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	90.89
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	82.48

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.89  E-value=4.7e-24  Score=156.73  Aligned_cols=60  Identities=68%  Similarity=1.123  Sum_probs=56.6

Q ss_pred             ceeeEEeCCCCcEEEEEecCCC-CceEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 046280           41 RFLGVRRRPWGRYAAEIRDPAT-KERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYS  100 (266)
Q Consensus        41 ~yrGV~~r~~GKW~A~I~~~~~-~kri~LGtF~T~EEAA~AYD~Aa~~~~G~~A~tNFp~s  100 (266)
                      +||||+++++|||+|+|+++.. |+++|||+|+|+||||+|||.|+++++|.++++|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999899999999999864 79999999999999999999999999999999999864

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=94.53  E-value=0.0017  Score=54.46  Aligned_cols=54  Identities=6%  Similarity=-0.111  Sum_probs=38.3

Q ss_pred             HHHHHHhhccCCCCCCceeeEEeCCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHH
Q 046280           25 KQQQQQQQNHMRQDEIRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYD   82 (266)
Q Consensus        25 ~~qn~~n~~~~~~~tS~yrGV~~r~~GKW~A~I~~~~~~kri~LGtF~T~EEAA~AYD   82 (266)
                      +++|.+++.+.+.+.. ++||.+.+.++|.+.|.+  . +.++||.|.+.+|||++|.
T Consensus        93 ~~eN~~~~~~~~~~~~-~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           93 QKINVENQMSRGTLNV-SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHHTCCCC-HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             HHHHhhcccccCcccc-eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            4566666655443322 467765335679999987  5 6778999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=90.89  E-value=0.12  Score=39.08  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=21.8

Q ss_pred             CCCCceeeEEeCC-CCcEEEEEecCCCCce
Q 046280           37 QDEIRFLGVRRRP-WGRYAAEIRDPATKER   65 (266)
Q Consensus        37 ~~tS~yrGV~~r~-~GKW~A~I~~~~~~kr   65 (266)
                      ...|+|+||+|.+ .+.|+|.-.+  +|++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r   30 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR   30 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence            3579999999886 7999999997  5654

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=82.48  E-value=1.5  Score=38.30  Aligned_cols=42  Identities=19%  Similarity=0.050  Sum_probs=31.5

Q ss_pred             eeEEeCCCCcEEEEEecCCCCceEeccCCCCHHHHHHHHHHHHHHh
Q 046280           43 LGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEDAALAYDRAARSM   88 (266)
Q Consensus        43 rGV~~r~~GKW~A~I~~~~~~kri~LGtF~T~EEAA~AYD~Aa~~~   88 (266)
                      .||++++.|+|+.++..  .||++.+|.  |.+||..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            36777778899887654  788999996  8888877766555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-28

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  100 bits (251), Expect = 4e-28
 Identities = 41/58 (70%), Positives = 47/58 (81%), Gaps = 1/58 (1%)

Query: 41 RFLGVRRRPWGRYAAEIRDPATKE-RHWLGTFDTAEDAALAYDRAARSMRGSKARTNF 97
           + GVR+RPWG++AAEIRDPA    R WLGTF+TAEDAALAYDRAA  MRGS+A  NF
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1.4e-24  Score=158.28  Aligned_cols=60  Identities=67%  Similarity=1.109  Sum_probs=55.7

Q ss_pred             ceeeEEeCCCCcEEEEEecC-CCCceEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 046280           41 RFLGVRRRPWGRYAAEIRDP-ATKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYS  100 (266)
Q Consensus        41 ~yrGV~~r~~GKW~A~I~~~-~~~kri~LGtF~T~EEAA~AYD~Aa~~~~G~~A~tNFp~s  100 (266)
                      +||||++|++|||+|+|+++ .+++++|||+|+|+||||+|||+|+++++|.++++|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999998899999999986 4568999999999999999999999999999999999964