Citrus Sinensis ID: 046362

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLRRDSGSVKRIARSHEHMC
ccEEEEcccccccccccccccEEEEEcEEEEEEEEcEEEEcccccccccccccccccccccccccccEEEEEEEEEcEEEEcEEEEcccccEEEEEEEEcEEEEEEEEEccccccccccccccccccEEEEccEEEccccEEEEccccEEEEEEEEEEcccccEEEEEEccccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEccccccEEEEEEEccccccccccccEEEEEEEEEEEEEEEccccEEEEccccccEEcEEEEEEEEEccccccccccEEEEEcEEEEccccccccHHHHHHccccccccccccccccc
cccEEEcccccHHcccccccEEEEEEEccEEEEEEcEEEEccccEccccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEEccccEEEEEEEEEcccccEEEEEccccccccEEEEEEEEEEEEEEccccEEEEEcccccEEEEEEEEEEEEEEcccccEEEEccccccccccccccEEEEEEEEEEEEccccccccEEEEcccccccccEEEEEEEEEEcccccccccccHHccccccccccccccHHHHHHccccccccccccccccc
idgtllappkvgswpksslfqwinFKWLhnftiqgngivdgqgfewwggsqsnsiqkkskhipemkptaLRFYASYNvtvrdikinnsplchlkfdssggikvknihisspenspntdgihlqntkdveiqhsdiacgddcvsiqtgcsnvhihhiscgpghgislgglgkdksvACVSDIVVEKISLQNTLAGVRIktwqggigsvknvsfssiqvwdvkvPIIIDQYYcdkhlcnnqtgavaiSGVEFnqiigtysvqpihlacsnsvpcsdvdlidiqlkpsskyqSFQQALCWnsygksqaplvpssidyclrrdsgsvKRIARSHEHMC
idgtllappkvgswpksSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKskhipemkptALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKislqntlagvriktwqggigsvknvsFSSIQVWDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLRRDSGSVKRIARSHEHMC
IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCgpghgislgglgKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLRRDSGSVKRIARSHEHMC
************SWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGG******************TALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIH****************NTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLR*****************
IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSID********************C
IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGS***********IPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLRRDSGSV***********
IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLRRD***************
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IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLRRDSGSVKRIARSHEHMC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
Q949Z1475 Polygalacturonase At1g481 no no 0.922 0.648 0.439 3e-71
Q94AJ5444 Probable polygalacturonas no no 0.961 0.722 0.374 1e-58
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.847 0.550 0.399 7e-58
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.907 0.597 0.391 2e-57
P43212514 Polygalacturonase OS=Cryp N/A no 0.967 0.628 0.368 5e-56
O23147431 Polygalacturonase ADPG1 O no no 0.886 0.686 0.384 1e-54
P35336467 Polygalacturonase OS=Acti N/A no 0.868 0.620 0.405 9e-54
Q02096462 Polygalacturonase OS=Pers N/A no 0.829 0.599 0.414 2e-53
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.844 0.642 0.400 6e-53
Q8RY29433 Polygalacturonase ADPG2 O no no 0.883 0.681 0.396 1e-52
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1 Back     alignment and function desciption
 Score =  268 bits (686), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/314 (43%), Positives = 192/314 (61%), Gaps = 6/314 (1%)

Query: 1   IDGTLLAPPKVGSWP-KSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWG--GSQSNSIQK 57
           +DG L+ P     WP K +  QW+ F  L  FT  G G V+G G +WW            
Sbjct: 141 LDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWDLPCKPHRGPDG 200

Query: 58  KSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNT 117
            S   P   PT +RF+ S N+ V+ ++I NSP  H+KFD   G+ +  I ISSP+ SPNT
Sbjct: 201 SSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNT 260

Query: 118 DGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVAC 177
           DGIHL NT+ V I +S ++ GDDC+SI TGCS+V I  ++CGP HGIS+G LG   S AC
Sbjct: 261 DGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGPSHGISIGSLGVHNSQAC 320

Query: 178 VSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCN 237
           VS+I V    ++++  G+R+KTWQGG GSV N+ F +IQ+ +V   II+DQYYC    C 
Sbjct: 321 VSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCR 380

Query: 238 NQTGAVAISGVEFNQIIGTYSVQ--PIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQAL 295
           N+T AV +  VE+  I GTY V+  PIH ACS++V C+++ + +++L P    +      
Sbjct: 381 NETSAVKVFDVEYRNIKGTYDVRSPPIHFACSDTVACTNITMSEVELLPEEG-ELVDDPF 439

Query: 296 CWNSYGKSQAPLVP 309
           CWN+YGK +   +P
Sbjct: 440 CWNAYGKQETLTIP 453
Polygalacturonase not involved in the final stages of pod shatter.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
225425613 479 PREDICTED: polygalacturonase At1g48100 [ 1.0 0.697 0.823 1e-160
255573961 477 Polygalacturonase precursor, putative [R 1.0 0.700 0.811 1e-159
449435398 467 PREDICTED: polygalacturonase At1g48100-l 1.0 0.715 0.787 1e-156
224102451 468 predicted protein [Populus trichocarpa] 0.964 0.688 0.773 1e-148
356497743 461 PREDICTED: polygalacturonase At1g48100-l 1.0 0.724 0.746 1e-147
356502035 462 PREDICTED: polygalacturonase At1g48100-l 1.0 0.722 0.741 1e-145
224110914378 predicted protein [Populus trichocarpa] 0.946 0.835 0.774 1e-140
297814886 470 hypothetical protein ARALYDRAFT_484425 [ 0.997 0.708 0.690 1e-138
15231579 470 putative polygalacturonase / pectinase [ 0.997 0.708 0.687 1e-137
357485783 489 Polygalacturonase [Medicago truncatula] 0.955 0.652 0.652 1e-134
>gi|225425613|ref|XP_002266099.1| PREDICTED: polygalacturonase At1g48100 [Vitis vinifera] gi|297739091|emb|CBI28580.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/334 (82%), Positives = 300/334 (89%)

Query: 1   IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSK 60
           IDGTLLAPPKV SWPKSSLFQWINFKWLHNFTIQG G VDGQG  WW  SQ + IQK+SK
Sbjct: 143 IDGTLLAPPKVASWPKSSLFQWINFKWLHNFTIQGTGTVDGQGSNWWSLSQIHYIQKRSK 202

Query: 61  HIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGI 120
            IP MKPTALRFYASY+VTV +I+I NSP CHLKFD SG + V NI ISSPENSPNTDGI
Sbjct: 203 DIPNMKPTALRFYASYDVTVCNIRIINSPQCHLKFDYSGRVNVTNITISSPENSPNTDGI 262

Query: 121 HLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSD 180
           HLQNT+DVEIQHS+I CGDDCVSIQTGCSNVH+HHI+CGPGHGISLGGLGK+KS ACVS+
Sbjct: 263 HLQNTQDVEIQHSNIGCGDDCVSIQTGCSNVHVHHINCGPGHGISLGGLGKEKSAACVSN 322

Query: 181 IVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQT 240
           +VV+ IS+QN L GVRIKTWQGGIGSVKNVSFS+IQV DVKVPI+IDQYYCDKH+C NQT
Sbjct: 323 LVVDNISVQNALYGVRIKTWQGGIGSVKNVSFSNIQVSDVKVPIMIDQYYCDKHICKNQT 382

Query: 241 GAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSY 300
           GAVAISGV +NQIIGTYSVQPIHLACSN+VPC+DVDLIDIQL PS +Y+SFQQALCWNSY
Sbjct: 383 GAVAISGVTYNQIIGTYSVQPIHLACSNNVPCTDVDLIDIQLNPSPRYRSFQQALCWNSY 442

Query: 301 GKSQAPLVPSSIDYCLRRDSGSVKRIARSHEHMC 334
           GKSQAPLVPSSIDYCLRR SGS   IA+SHE +C
Sbjct: 443 GKSQAPLVPSSIDYCLRRHSGSFMEIAKSHEIIC 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573961|ref|XP_002527898.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223532673|gb|EEF34455.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435398|ref|XP_004135482.1| PREDICTED: polygalacturonase At1g48100-like [Cucumis sativus] gi|449516643|ref|XP_004165356.1| PREDICTED: polygalacturonase At1g48100-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224102451|ref|XP_002312682.1| predicted protein [Populus trichocarpa] gi|222852502|gb|EEE90049.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356497743|ref|XP_003517718.1| PREDICTED: polygalacturonase At1g48100-like [Glycine max] Back     alignment and taxonomy information
>gi|356502035|ref|XP_003519827.1| PREDICTED: polygalacturonase At1g48100-like [Glycine max] Back     alignment and taxonomy information
>gi|224110914|ref|XP_002315680.1| predicted protein [Populus trichocarpa] gi|222864720|gb|EEF01851.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297814886|ref|XP_002875326.1| hypothetical protein ARALYDRAFT_484425 [Arabidopsis lyrata subsp. lyrata] gi|297321164|gb|EFH51585.1| hypothetical protein ARALYDRAFT_484425 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15231579|ref|NP_189293.1| putative polygalacturonase / pectinase [Arabidopsis thaliana] gi|1402880|emb|CAA66811.1| polygalacturonase-like protein [Arabidopsis thaliana] gi|9293940|dbj|BAB01843.1| polygalacturonase [Arabidopsis thaliana] gi|26450320|dbj|BAC42276.1| putative polygalacturonase [Arabidopsis thaliana] gi|332643664|gb|AEE77185.1| putative polygalacturonase / pectinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357485783|ref|XP_003613179.1| Polygalacturonase [Medicago truncatula] gi|355514514|gb|AES96137.1| Polygalacturonase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
TAIR|locus:2088842470 AT3G26610 [Arabidopsis thalian 0.997 0.708 0.657 2.4e-124
TAIR|locus:2036581540 AT1G60590 [Arabidopsis thalian 0.808 0.5 0.498 1.2e-83
TAIR|locus:2222657435 AT5G14650 [Arabidopsis thalian 0.967 0.742 0.461 2.3e-78
TAIR|locus:2019963532 AT1G10640 [Arabidopsis thalian 0.811 0.509 0.5 2.2e-73
TAIR|locus:2023817475 AT1G48100 [Arabidopsis thalian 0.988 0.694 0.404 1.1e-64
TAIR|locus:2027534434 AT1G56710 [Arabidopsis thalian 0.934 0.718 0.4 6.2e-62
TAIR|locus:2196055491 AT1G02460 [Arabidopsis thalian 0.946 0.643 0.401 1.6e-61
TAIR|locus:2141345468 AT4G01890 [Arabidopsis thalian 0.940 0.670 0.404 1.9e-60
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.946 0.675 0.387 2.1e-54
TAIR|locus:2016314444 AT1G80170 [Arabidopsis thalian 0.961 0.722 0.344 3.5e-52
TAIR|locus:2088842 AT3G26610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 225/342 (65%), Positives = 277/342 (80%)

Query:     1 IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSK 60
             I+G L+AP K+GSWP SSLFQW+NFKW+ + TIQG+G ++G+G+ WW    +   Q ++K
Sbjct:   128 IEGILVAPEKIGSWPNSSLFQWLNFKWVSHLTIQGSGTLNGRGYNWWN-LDTYQTQTRNK 186

Query:    61 HIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGI 120
             +IP MKPTALRFY+S NVTVRDI I NSPLCHLKFD S G+KV NI ISSPENSPNTDGI
Sbjct:   187 YIPPMKPTALRFYSSNNVTVRDISIVNSPLCHLKFDDSDGVKVNNITISSPENSPNTDGI 246

Query:   121 HLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCXXXXXXXXXXXXKDKSVACVSD 180
             HLQNT++VEIQHS+IACGDDCVSIQTG SNVHIHHI+C            KDKSVACVSD
Sbjct:   247 HLQNTRNVEIQHSNIACGDDCVSIQTGSSNVHIHHINCGPGHGISIGGLGKDKSVACVSD 306

Query:   181 IVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQT 240
             I+VE IS+QNTLAGVRIKTWQGG+G VKN++FS+IQV DVKVPI+IDQYYCDK  C NQT
Sbjct:   307 IIVEDISIQNTLAGVRIKTWQGGLGVVKNLTFSNIQVKDVKVPIVIDQYYCDKSKCKNQT 366

Query:   241 GAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQ-----QAL 295
              AV+ISGV++N I+G+++VQP+ +ACSN+VPC DVDL+DI+L+PS   +  Q     QAL
Sbjct:   367 RAVSISGVKYNNIVGSFTVQPVRIACSNNVPCMDVDLMDIRLRPSGGIRGLQTHQQQQAL 426

Query:   296 CWNSYGKSQAPLVPSSIDYCLRRDS-GSV--KRIARSHEHMC 334
             CWNSYGK+Q PLVPSSI YCLR+ + G    ++++RS++ +C
Sbjct:   427 CWNSYGKTQGPLVPSSIGYCLRKSNIGGYYSQKVSRSYDKIC 468
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2036581 AT1G60590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222657 AT5G14650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019963 AT1G10640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2023817 AT1G48100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027534 AT1G56710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196055 AT1G02460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141345 AT4G01890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016314 AT1G80170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002763001
SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (479 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 3e-81
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 6e-73
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-68
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 2e-61
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 3e-60
PLN03010409 PLN03010, PLN03010, polygalacturonase 2e-58
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-48
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-18
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information 
 Score =  253 bits (648), Expect = 3e-81
 Identities = 125/332 (37%), Positives = 187/332 (56%), Gaps = 11/332 (3%)

Query: 1   IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSK 60
           I GT++AP     W   +  +W+ F  +++ T++G G V+G G EWW  +QS  I   + 
Sbjct: 115 ISGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWW--AQSCKINHTNP 172

Query: 61  HIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGI 120
                 PTA+ F+   ++ V ++ + +S   H+ F +   + +  + + +P  SPNTDGI
Sbjct: 173 --CRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGI 230

Query: 121 HLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSD 180
           H+  ++ V I+ S +  GDDC+SI    S + I +I+CGPGHGIS+G LGK  S + V D
Sbjct: 231 HISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRD 290

Query: 181 IVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHL-CNNQ 239
           I V+   L NT  GVRIKTWQGG G+   ++F +I + +V  PIIIDQYYCD    C NQ
Sbjct: 291 ITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQ 350

Query: 240 TGAVAISGVEFNQIIGTYSVQ-PIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWN 298
           T AV +  + F  I GT + +  I  ACS+S PC  + L D+QL  S+    F ++ CW 
Sbjct: 351 TSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTG--DFTESFCWE 408

Query: 299 SYGKSQAPLVPSSIDYCLRRDSGSVKRIARSH 330
           +YG S   + P     C    +  +K+  +S 
Sbjct: 409 AYGSSSGQVYPPP---CFSDSTSFIKQKVQSG 437

Length = 443
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
PLN02793443 Probable polygalacturonase 99.89
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.88
PLN02218431 polygalacturonase ADPG 99.88
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.88
PLN02155394 polygalacturonase 99.88
PLN03003456 Probable polygalacturonase At3g15720 99.87
PLN03010409 polygalacturonase 99.82
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.75
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.45
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.16
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.16
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.88
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.58
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.56
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.49
smart00656190 Amb_all Amb_all domain. 98.43
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.42
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.26
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.2
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.19
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.14
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.1
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.05
smart00656190 Amb_all Amb_all domain. 97.87
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.87
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.86
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.86
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.2
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 93.85
PLN02480343 Probable pectinesterase 93.53
PLN02773317 pectinesterase 93.21
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 92.86
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 92.51
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 90.88
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 90.09
PLN02480343 Probable pectinesterase 88.52
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 87.2
PLN02665366 pectinesterase family protein 86.81
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 86.53
PLN02773317 pectinesterase 85.19
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 84.94
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 84.63
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 83.7
PLN02665366 pectinesterase family protein 83.65
PLN02682369 pectinesterase family protein 83.39
PLN02416541 probable pectinesterase/pectinesterase inhibitor 82.91
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 82.08
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 82.03
PLN02197588 pectinesterase 81.74
PLN02432293 putative pectinesterase 81.57
PLN02634359 probable pectinesterase 81.55
PLN02682369 pectinesterase family protein 81.23
PLN02916502 pectinesterase family protein 80.47
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 80.1
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 80.01
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=3.8e-69  Score=529.17  Aligned_cols=322  Identities=38%  Similarity=0.727  Sum_probs=291.9

Q ss_pred             CcEEEEcCCCCCCCCCCCCcccEEEEceEeeEEEeccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEE
Q 046362            1 IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTV   80 (334)
Q Consensus         1 i~g~L~~s~~~~~y~~~~~~~~i~~~~~~Nv~I~G~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i   80 (334)
                      |+|+|++++++++|+....++||++.+++||+|+|.|+|||+|+.||......    ........||++|+|.+|+|++|
T Consensus       115 l~g~l~~~~d~~~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~----~~~~~~~~rP~~i~f~~~~nv~v  190 (443)
T PLN02793        115 ISGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKI----NHTNPCRHAPTAITFHKCKDLRV  190 (443)
T ss_pred             EEEEEEccCChHHccCCCCceEEEEecCceEEEEeceEEECCCcccccccccc----cCCCCccCCceEEEEEeeccEEE
Confidence            57999999999999977667899999999999999999999999999753210    00111135899999999999999


Q ss_pred             EeEEEEcCCCCceEEecccCEEEEeEEEECCCCCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcC
Q 046362           81 RDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGP  160 (334)
Q Consensus        81 ~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~  160 (334)
                      +||+++|||+|++++.+|+||+|++++|.++.+.|||||||+.+|+||+|+||+|.++||||++|++++||+|+||+|.+
T Consensus       191 ~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~  270 (443)
T PLN02793        191 ENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGP  270 (443)
T ss_pred             ECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeC
Confidence            99999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCCceeEEEEeeecCC-CCCCCC
Q 046362          161 GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDK-HLCNNQ  239 (334)
Q Consensus       161 ~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~~~i~I~~~y~~~-~~~~~~  239 (334)
                      +|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||+|+|++|.|+||+|+||+|+++.+||.|++.|+.. .+|..+
T Consensus       271 GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~  350 (443)
T PLN02793        271 GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQ  350 (443)
T ss_pred             CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCC
Confidence            9999999998876668899999999999999999999999999999999999999999999999999999763 356656


Q ss_pred             CCceeEeeEEEEEEEEeecc-ccEEEEcCCCCCeecEEEEeEEEEcCCCcccccceeeeceEEeecccccCCcccccccc
Q 046362          240 TGAVAISGVEFNQIIGTYSV-QPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYGKSQAPLVPSSIDYCLRR  318 (334)
Q Consensus       240 ~~~~~i~nIt~~nI~~t~~~-~~~~i~~~~~~~~~nI~f~nv~i~~~~g~~~~~~~~c~~v~g~~~~~~~P~~~~~c~~~  318 (334)
                      ++.+.|+||+|+||+++... .++.|.|.++.||+||+|+||+|+...|+.  ....|+|++|...+++.|+   +|+.+
T Consensus       351 ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~--~~~~C~n~~g~~~~~~~p~---~C~~~  425 (443)
T PLN02793        351 TSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDF--TESFCWEAYGSSSGQVYPP---PCFSD  425 (443)
T ss_pred             CCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCC--CCcEEEccEEeECCeEcCC---ccccC
Confidence            67789999999999999754 378999999999999999999999887653  4688999999999999998   99999


Q ss_pred             ccccccccccccc
Q 046362          319 DSGSVKRIARSHE  331 (334)
Q Consensus       319 ~~~~~~~~~~~~~  331 (334)
                      +.+++++-+.||.
T Consensus       426 ~~~~~~~~~~~~~  438 (443)
T PLN02793        426 STSFIKQKVQSGS  438 (443)
T ss_pred             CCcccccccCCcc
Confidence            9999999998874

>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-18
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 6e-11
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 7e-10
1nhc_A336 Structural Insights Into The Processivity Of Endopo 7e-10
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 9e-09
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 2e-08
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 7e-08
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 8e-07
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 12/216 (5%)
Query: 30  NFTIQGNGIVDGQG--------FEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVR 81
           N  I G G +DGQG          WW  +    ++K  ++ P +    ++   S N T+ 
Sbjct: 110 NSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRL----IQINKSKNFTLY 165
Query: 82  DIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDC 141
           ++ + NSP  H+ F    G       I +P  + NTDGI   ++K++ I +S+IA GDD 
Sbjct: 166 NVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDN 225
Query: 142 VSIQTGCSNVHIHHISCXXXXXXXXXXXXKDKSVACVSDIVVEKISLQNTLAGVRIKTWQ 201
           V+I+         +IS                    V ++ V+ + +  T  G+RIK+ +
Sbjct: 226 VAIKAYKGRAETRNISILHNDFGTGHGMSIGSETMGVYNVTVDDLKMNGTTNGLRIKSDK 285
Query: 202 GGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCN 237
              G V  V +S++ + +V  PI+ID  Y  K   N
Sbjct: 286 SAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSN 321
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 8e-96
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-93
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 6e-87
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-86
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 3e-86
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 4e-83
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 1e-82
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 5e-74
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-72
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-69
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 9e-21
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-19
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-15
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-15
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 3e-12
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 8e-09
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 1e-06
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
 Score =  288 bits (738), Expect = 8e-96
 Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 31/309 (10%)

Query: 2   DGTLLAPPKVGSWPK------------SSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGG 49
             TL A     S+                   +I      N  I G G +DGQG      
Sbjct: 70  GVTLRAVNNAKSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQD 129

Query: 50  SQS----NSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKN 105
            +      +   K K + +  P  ++   S N T+ ++ + NSP  H+ F    G     
Sbjct: 130 KKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWK 189

Query: 106 IHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTG-----CSNVHIHHISCGP 160
             I +P  + NTDGI   ++K++ I +S+IA GDD V+I+         N+ I H   G 
Sbjct: 190 TTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGT 249

Query: 161 GHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDV 220
           GHG+S+G          V ++ V+ + +  T  G+RIK+ +   G V  V +S++ + +V
Sbjct: 250 GHGMSIGSET-----MGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNV 304

Query: 221 KVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQIIGTYSVQPIHLACSNSVPCSDVDLIDI 280
             PI+ID  Y         +     S + F  +    +   + L   N+    +V + ++
Sbjct: 305 AKPIVIDTVYE----KKEGSNVPDWSDITFKDVTSE-TKGVVVLNGENAKKPIEVTMKNV 359

Query: 281 QLKPSSKYQ 289
           +L   S +Q
Sbjct: 360 KLTSDSTWQ 368
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.96
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.96
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.95
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.95
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.95
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.9
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.89
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.89
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.89
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.88
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.87
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.87
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.86
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.75
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.75
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.73
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.71
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.62
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.56
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.56
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.44
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.92
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.64
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.46
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.44
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.3
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.3
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.28
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.26
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.21
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.18
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.13
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.06
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.98
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.92
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.88
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.82
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.82
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.81
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.73
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.61
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.61
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.56
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.53
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.5
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.47
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.35
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.33
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 96.99
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.66
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.32
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.15
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.12
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.23
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 95.02
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 94.57
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 94.26
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 93.09
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 91.09
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 90.55
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 90.48
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 90.46
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 89.06
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 87.7
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 83.27
2vfm_A559 Bifunctional tail protein; P22 tailspike protein, 83.22
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 82.17
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 80.62
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
Probab=100.00  E-value=2.1e-56  Score=430.47  Aligned_cols=274  Identities=26%  Similarity=0.477  Sum_probs=239.7

Q ss_pred             cEEEEcCCCCCCCCCCCCcccEEEEceEeeEEEe--ccEEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEE
Q 046362            2 DGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQG--NGIVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVT   79 (334)
Q Consensus         2 ~g~L~~s~~~~~y~~~~~~~~i~~~~~~Nv~I~G--~G~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~   79 (334)
                      +|++.+.  ..+|+    .+||++. .+||+|+|  .|+|||+|+.||+....         ....||++++|..|+|++
T Consensus        75 ~g~~~~~--~~~w~----g~~i~~~-~~nv~I~G~~~g~IdG~G~~~w~~~~~---------~~~~rP~~i~~~~~~nv~  138 (362)
T 1czf_A           75 EGTTTFQ--YEEWA----GPLISMS-GEHITVTGASGHLINCDGARWWDGKGT---------SGKKKPKFFYAHGLDSSS  138 (362)
T ss_dssp             ESEEEEC--CCCSC----CCSEEEE-EESCEEEECTTCEEECCGGGTCCSCTT---------SSSCCCCCEEEEEEETEE
T ss_pred             eCcEEec--cccCC----CcEEEEe-CccEEEEcCCCcEEECCCchhhcccCC---------CCCCCCeEEEEeecccEE
Confidence            3455542  35564    3699884 69999999  69999999999985431         124699999999999999


Q ss_pred             EEeEEEEcCCCCceEEecccCEEEEeEEEECCC-C---CCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEe
Q 046362           80 VRDIKINNSPLCHLKFDSSGGIKVKNIHISSPE-N---SPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHH  155 (334)
Q Consensus        80 i~gi~i~n~~~~~i~~~~~~nV~i~~~~I~~~~-~---~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~n  155 (334)
                      |+||+++|+|+|++++. |+||+|+|++|.++. +   ++|+||||+.+|+||+|+||+|.++||||++|++ +||+|+|
T Consensus       139 i~~iti~nsp~~~i~i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiksg-~nI~i~n  216 (362)
T 1czf_A          139 ITGLNIKNTPLMAFSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTG  216 (362)
T ss_dssp             EESCEEECCSSCCEEEE-CSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEECSSCSEEESSE-EEEEEES
T ss_pred             EEEEEEecCCccEEEEe-eCCEEEEEEEEECCccccccCCCCCceeecCcceEEEEeeEEecCCCEEEEeCC-eEEEEEE
Confidence            99999999999999999 999999999999964 3   7999999999999999999999999999999995 9999999


Q ss_pred             EEEcCCceEEEeccCccCCCCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCCc-eeEEEEeeecCCC
Q 046362          156 ISCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVK-VPIIIDQYYCDKH  234 (334)
Q Consensus       156 c~~~~~~gi~IGS~g~~~~~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~~-~~i~I~~~y~~~~  234 (334)
                      |+|.++|||+|||+|++ +.+.|+||+|+||+|.++.+|+|||+++++.|.|+||+|+||+|+++. +||.|++.|+...
T Consensus       217 ~~~~~ghGisiGS~G~~-~~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nI~~~ni~~~~v~~~~i~I~~~Y~~~~  295 (362)
T 1czf_A          217 GTCIGGHGLSIGSVGDR-SNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGK  295 (362)
T ss_dssp             CEEESSCCEEEEEECSS-SCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEEEEEEEEEEEEEEEETTE
T ss_pred             EEEeCCceeEEeecccc-CCCCEEEEEEEeeEEECCceEEEEEEeCCCCceEeeEEEEeEEEECcccccEEEEEecCCCC
Confidence            99999999999999875 568999999999999999999999999998999999999999999996 7999999998743


Q ss_pred             CCCCCCCceeEeeEEEEEEEEeecc--ccEEEEcCCCCCeecEEEEeEEEEcCCCcccccceeeeceE
Q 046362          235 LCNNQTGAVAISGVEFNQIIGTYSV--QPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSY  300 (334)
Q Consensus       235 ~~~~~~~~~~i~nIt~~nI~~t~~~--~~~~i~~~~~~~~~nI~f~nv~i~~~~g~~~~~~~~c~~v~  300 (334)
                      .++.+...+.|+||+|+||+++...  .++.|.|. ..+|+||+|+||+|++..     ....|.|+.
T Consensus       296 ~~~~p~~~~~i~nI~~~ni~gt~~~~~~~i~i~c~-~~~c~ni~~~nv~i~~~~-----~~~~C~n~~  357 (362)
T 1czf_A          296 PTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCG-SGSCSDWTWDDVKVTGGK-----KSTACKNFP  357 (362)
T ss_dssp             ECSCCCSSEEEEEEEEEEEEEEECTTSEEEEEECC-TTTEEEEEEEEEEEESSB-----CCSCCBSCC
T ss_pred             CCCCCCCCceEEEEEEEEEEEEecCCceEEEEEeC-CCcCcCEEEEeEEEEcCC-----CcccCcCCC
Confidence            3333445689999999999999865  48899997 789999999999998632     246799885
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 334
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 5e-59
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-55
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-51
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-50
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-50
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-49
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 1e-47
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 1e-45
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  193 bits (492), Expect = 5e-59
 Identities = 70/325 (21%), Positives = 125/325 (38%), Gaps = 41/325 (12%)

Query: 1   IDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSQSNSIQKKSK 60
           +DG +             +    +      F+    G V G G+ +              
Sbjct: 78  LDGIIYRTGTASGN----MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYG------- 126

Query: 61  HIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGI 120
                    LR     + +V DI + ++P  H   D+    +V N+ I    N    DGI
Sbjct: 127 ------ARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGI 179

Query: 121 HLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKSVACVSD 180
            +  + ++ +   ++   D+CV++++  +N+ +  I C    G ++G LG D     V+D
Sbjct: 180 DVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDVTD 235

Query: 181 IVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDVKVPIIIDQYYCDKHLCNNQT 240
           IV   +   ++     IK+  G  G+V NV   +         + ID Y+          
Sbjct: 236 IVYRNVYTWSSNQMYMIKSNGGS-GTVSNVLLENFIGHGNAYSLDIDGYWSSM--TAVAG 292

Query: 241 GAVAISGVEFNQIIGT----YSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALC 296
             V ++ +      GT     +  PI + CS++ PC+D+ L DI +   S   S +  LC
Sbjct: 293 DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESG--SSELYLC 350

Query: 297 WNSYGKSQAPLVPSSIDYCLRRDSG 321
            ++YG            YCL+  S 
Sbjct: 351 RSAYGSG----------YCLKDSSS 365
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.89
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.89
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.88
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.86
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.86
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.79
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.73
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.53
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.61
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.88
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.61
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.49
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.38
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.26
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.24
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.21
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.2
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.16
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.99
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.91
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 96.83
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.56
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.19
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 93.69
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 90.82
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 89.04
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 88.66
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 87.26
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=4.2e-58  Score=435.94  Aligned_cols=263  Identities=26%  Similarity=0.422  Sum_probs=232.1

Q ss_pred             ccEEEEceEeeEEEecc--EEEcCCccccCCCCCccccccCCCCCCCCCeEEEEEeEecEEEEeEEEEcCCCCceEEecc
Q 046362           21 QWINFKWLHNFTIQGNG--IVDGQGFEWWGGSQSNSIQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSS   98 (334)
Q Consensus        21 ~~i~~~~~~Nv~I~G~G--~idG~G~~~w~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~gi~i~n~~~~~i~~~~~   98 (334)
                      +|+++ ..+||+|+|.|  +|||+|+.||+....        .....||++|.|.+|+|++|+||+|+|||+|++++.+|
T Consensus        65 ~l~~~-~g~ni~i~G~g~g~IDG~G~~wW~~~~~--------~~~~~rP~~l~~~~~~nv~i~gitl~nsp~w~~~~~~s  135 (339)
T d1ia5a_          65 PLISV-SGSDLTITGASGHSINGDGSRWWDGEGG--------NGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGS  135 (339)
T ss_dssp             CSEEE-EEESCEEEECTTCEEECCGGGTCSSCTT--------TSSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEEESC
T ss_pred             CeEEE-EeeeEEEEecCCCeEeCCchhhhhcccC--------CCCCCCCeEEEEEecCCCEEeceEEEcCCceEEEEecc
Confidence            45544 57999999976  999999999986432        12347999999999999999999999999999999999


Q ss_pred             cCEEEEeEEEECCC----CCCCCCceeEeCeecEEEEeeEEecCCCeeeecCCceeEEEEeEEEcCCceEEEeccCccCC
Q 046362           99 GGIKVKNIHISSPE----NSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIHHISCGPGHGISLGGLGKDKS  174 (334)
Q Consensus        99 ~nV~i~~~~I~~~~----~~~ntDGidi~~s~nV~I~n~~i~~gDD~i~iksg~~nI~I~nc~~~~~~gi~IGS~g~~~~  174 (334)
                      +||+|+|++|.++.    .++|+||||+.+|+||+|+||+|.++||||++|+ .+||+|+||+|..+||++||++|.+ +
T Consensus       136 ~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks-~~ni~i~n~~c~~ghG~sigslG~~-~  213 (339)
T d1ia5a_         136 DYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNS-GENIYFSGGYCSGGHGLSIGSVGGR-S  213 (339)
T ss_dssp             EEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESS-EEEEEEESCEEESSSCEEEEEECSS-S
T ss_pred             cEEEEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEcCCCeEEecC-ccEEEEEEeEEeccccceecccccC-c
Confidence            99999999999863    4689999999999999999999999999999998 5899999999999999999999875 4


Q ss_pred             CCcEEEEEEEeEEEecCCceEEEeeecCCcceEEeEEEEeEEEeCC-ceeEEEEeeecCCCCCCCCCCceeEeeEEEEEE
Q 046362          175 VACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVWDV-KVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQI  253 (334)
Q Consensus       175 ~~~i~nI~~~ni~i~~~~~gi~Ik~~~g~~G~i~nI~f~ni~~~~~-~~~i~I~~~y~~~~~~~~~~~~~~i~nIt~~nI  253 (334)
                      .+.|+||+|+||+|.++.+|+|||++.+++|.|+||+|+||+|+++ ++||.|++.|++...+  +...++|+||+|+||
T Consensus       214 ~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~~--~~~~v~i~nI~~~Ni  291 (339)
T d1ia5a_         214 DNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSST--PTTGVPITDFVLDNV  291 (339)
T ss_dssp             CCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTSC--CCSSSCEEEEEEEEE
T ss_pred             cccEEEEEEECCcccCCcceeEEeeeCCCCEEEEEEEEEEEEEeccccccEEEEeecCCCCCC--CCCCcEEEeEEEEeE
Confidence            5789999999999999999999999999999999999999999998 5799999999765433  345678999999999


Q ss_pred             EEeeccc-cEEEEcCCCCCeecEEEEeEEEEcCCCcccccceeeeceEE
Q 046362          254 IGTYSVQ-PIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNSYG  301 (334)
Q Consensus       254 ~~t~~~~-~~~i~~~~~~~~~nI~f~nv~i~~~~g~~~~~~~~c~~v~g  301 (334)
                      +++.... +..+.|.+..||+||+|+||+|++.+     +...|.|+.+
T Consensus       292 ~gt~~~~~~~~~~~~~~~p~~ni~~~nV~itg~~-----~~~~C~nv~~  335 (339)
T d1ia5a_         292 HGSVVSSGTNILISCGSGSCSDWTWTDVSVSGGK-----TSSKCTNVPS  335 (339)
T ss_dssp             EEEECTTSEEEEEECCTTCEEEEEEEEEEEESSB-----CCSCCBSCCT
T ss_pred             EEEecccCceEEEeCCCCCEeceEEEeEEEcCCC-----cceEeECCCc
Confidence            9987654 66778888899999999999998432     3477999965
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure