Citrus Sinensis ID: 046390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNEQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccEEEEEEEHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGFRLPGIVQAKKILRQSSFKASqsamtatevpkGYLAVYVGENEMKRFMIpvsylnqspfqDLLSQAEEefgfhhpmggltipcrEDIFIDLISRLNEQ
Flexible Loop (DISEMBL)
MGFRLPGIVQAKKILRQSSFKasqsamtatevpkGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNEQ
Low Complexity Region (SEG)
MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNEQ
Disordered region (IsUnstruct)
******************************EVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLIS*****
Disordered Region (DISOPRED)
*GFR***IVQ************************GYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN**
Disordered Region (DISEMBL)
MGFRLPGIVQAKKILRQ***********ATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNEQ
Disordered Region (DISPRO)
*GFRLPGIVQAKKILRQSSFKAS***MTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
P33080	92	Auxin-induced protein X10	no	no	0.91	0.989	0.626	3e-30
P33083	90	Auxin-induced protein 6B	no	no	0.9	1.0	0.653	4e-30
P33079	93	Auxin-induced protein 10A	no	no	0.92	0.989	0.595	3e-28
P33081	82	Auxin-induced protein 15A	no	no	0.82	1.0	0.632	4e-27
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.92	1.0	0.61	4e-27
P33082	82	Auxin-induced protein X15	no	no	0.82	1.0	0.591	2e-25

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 78/99 (78%), Gaps = 8/99 (8%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFRLPGI       R++S  A+Q++  + EVPKGYL VYVG+ +M+RF+IPVSYLNQ  
Sbjct: 1  MGFRLPGI-------RKTSIAANQASSKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPS 52

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNE 99
          FQDLL+QAEEEFG+ HPMGGLTIPC+ED F+ + S LN+
Sbjct: 53 FQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLND 91

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 77/98 (78%), Gaps = 8/98 (8%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFRLPGI       R++SF A+Q++  A +V KGYLAVYVGE +M+RF+IPVSYLN+  
Sbjct: 1  MGFRLPGI-------RKASFSANQASSKAVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPS 52

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
          FQDLLSQAEEEFG+HHP GGLTIPC ED+F  + S LN
Sbjct: 53 FQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 77/99 (77%), Gaps = 7/99 (7%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFR+ GIV      R++SF  +Q+A    +VPKGY AVYVG ++M+RF IPVSYLN+  
Sbjct: 1  MGFRIAGIV------RRTSFYTTQAASKRVDVPKGYAAVYVG-DKMRRFTIPVSYLNEPS 53

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNE 99
          FQ+LLSQAEEEFG+ HPMGGLTIPC+E+ F+++ + LNE
Sbjct: 54 FQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHLNE 92

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 70/98 (71%), Gaps = 16/98 (16%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFRLPGI +A K               A + PKGYLAVYVGE ++KRF+IPVSYLNQ  
Sbjct: 1  MGFRLPGIRKASK---------------AADAPKGYLAVYVGE-KLKRFVIPVSYLNQPS 44

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
          FQDLLSQAEEEFG+ HPMGGLTIPC ED+F  + S LN
Sbjct: 45 FQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 74/100 (74%), Gaps = 8/100 (8%)

Query: 1   MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
           MGFRLPGI       R++    ++++    + PKGYLAVYVGEN MKRF+IPVS+LNQ  
Sbjct: 1   MGFRLPGI-------RKTLSARNEASSKVLDAPKGYLAVYVGEN-MKRFVIPVSHLNQPL 52

Query: 61  FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNEQ 100
           FQDLLSQAEEEFG+ HPMGGLTIPC ED+F  + S L+ Q
Sbjct: 53  FQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLSAQ 92

Vigna radiata var. radiata (taxid: 3916)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 68/98 (69%), Gaps = 16/98 (16%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFRLPGI               + A  A + PKGYLAVYVGE +MKRF+IPVSY+NQ  
Sbjct: 1  MGFRLPGI---------------RKASNAVDAPKGYLAVYVGE-KMKRFVIPVSYMNQPS 44

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
          FQDLL+QAEEEFG+ HPMGGLTIPC E++F  +   LN
Sbjct: 45 FQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRITCCLN 82

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
356544935	92	PREDICTED: auxin-induced protein X10A-li	0.9	0.978	0.704	4e-31
356531557	93	PREDICTED: auxin-induced protein 10A5-li	0.92	0.989	0.676	7e-31
356544445	92	PREDICTED: auxin-induced protein 6B-like	0.9	0.978	0.683	7e-31
356544441	92	PREDICTED: auxin-induced protein X10A-li	0.9	0.978	0.663	9e-31
225430953	103	PREDICTED: auxin-induced protein X10A-li	0.98	0.951	0.663	1e-30
356529817	92	PREDICTED: auxin-induced protein 6B-like	0.92	1.0	0.66	1e-30
449531962	100	PREDICTED: auxin-induced protein X10A-li	0.99	0.99	0.626	1e-30
225430959	103	PREDICTED: auxin-induced protein X10A [V	0.98	0.951	0.643	1e-30
449507018	100	PREDICTED: auxin-induced protein X10A-li	0.99	0.99	0.636	4e-30
357462771	92	Auxin-induced protein-like protein [Medi	0.9	0.978	0.663	4e-30

>gi|356544935|ref|XP_003540902.1| PREDICTED: auxin-induced protein X10A-like [Glycine max]

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 78/98 (79%), Gaps = 8/98 (8%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFRLPGI       R+SSF  +++A  A EVPKGYLAVYVGE +MKRF+IP+SYLNQ  
Sbjct: 1  MGFRLPGI-------RRSSFAVTKAASKAVEVPKGYLAVYVGE-KMKRFVIPISYLNQPL 52

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
          FQ LLSQAEEEFG+ HPMGGLTIPC ED F+DL SRLN
Sbjct: 53 FQQLLSQAEEEFGYDHPMGGLTIPCSEDAFLDLTSRLN 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531557|ref|XP_003534344.1| PREDICTED: auxin-induced protein 10A5-like [Glycine max]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 80/99 (80%), Gaps = 7/99 (7%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFR+PGI+      RQ+SF A+++     +VPKGYLAVYVG ++MKRF+IPVSYLNQ  
Sbjct: 1  MGFRIPGII------RQASFSAAKATCKGLQVPKGYLAVYVG-DKMKRFVIPVSYLNQPS 53

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNE 99
          FQ+LLSQAEEEFGF HP GGLTIPCRED F++L SRLNE
Sbjct: 54 FQELLSQAEEEFGFDHPTGGLTIPCREDEFLNLTSRLNE 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544445|ref|XP_003540661.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 79/98 (80%), Gaps = 8/98 (8%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFRLPGI       R++SF  +Q++  A EVPKGYLAVYVGE  MKRF+IP+SYL QS 
Sbjct: 1  MGFRLPGI-------RRASFAENQASSKAVEVPKGYLAVYVGE-RMKRFVIPISYLTQSS 52

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
          FQDLLS+AEEEFG+ HPMGGLTIPCRED+F ++ SRLN
Sbjct: 53 FQDLLSRAEEEFGYDHPMGGLTIPCREDVFQNITSRLN 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544441|ref|XP_003540659.1| PREDICTED: auxin-induced protein X10A-like [Glycine max]

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 81/98 (82%), Gaps = 8/98 (8%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFRLPGI       R++SF A++++  + +VPKGYLAVYVGE ++KRF+IP+SYLNQ  
Sbjct: 1  MGFRLPGI-------RKASFAANKASSKSVDVPKGYLAVYVGE-KIKRFVIPISYLNQLS 52

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
          FQDLLSQAEEEFG+ HPMGGLTIPC ED+F+D +SRLN
Sbjct: 53 FQDLLSQAEEEFGYDHPMGGLTIPCGEDVFLDTVSRLN 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430953|ref|XP_002271562.1| PREDICTED: auxin-induced protein X10A-like [Vitis vinifera]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 80/101 (79%), Gaps = 3/101 (2%)

Query: 1   MGFRLPGIVQAKKILR-QSSFKASQSAMTAT--EVPKGYLAVYVGENEMKRFMIPVSYLN 57
           MGFRLP +V A++IL+ QS    SQS++ AT  EVPKG+ AVYVGE E KRF++P+SYLN
Sbjct: 1   MGFRLPSMVHARQILKLQSLLTRSQSSILATTAEVPKGHFAVYVGEAEKKRFVVPISYLN 60

Query: 58  QSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
              FQ LLS AEEEFGF+HPMGG+TIPC ED FIDL SRL+
Sbjct: 61  NPSFQKLLSHAEEEFGFNHPMGGVTIPCNEDAFIDLTSRLH 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529817|ref|XP_003533484.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 78/100 (78%), Gaps = 8/100 (8%)

Query: 1   MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
           MGFR P I       R++SF A+Q+A  + +VPKGY+AVYVGEN M+RF+IP+SYLNQ  
Sbjct: 1   MGFRFPAI-------RRASFNANQAASKSVQVPKGYVAVYVGEN-MRRFVIPISYLNQPS 52

Query: 61  FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNEQ 100
           FQDLLSQAEEEFG+ HPMGGLTIPC ED+F    SRLNEQ
Sbjct: 53  FQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQQTTSRLNEQ 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531962|ref|XP_004172954.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 78/99 (78%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFRLP IV AK+ L++SS   +  +  A +VPKGY  VYVGE + KRF+IP+SYLNQ  
Sbjct: 1  MGFRLPRIVTAKQSLQRSSSTGNGESPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNE 99
          FQDLLSQ+EEEFG++HPMGG+TIPC ED F+D+  RLN+
Sbjct: 61 FQDLLSQSEEEFGYNHPMGGITIPCSEDCFLDVTERLND 99

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430959|ref|XP_002271660.1| PREDICTED: auxin-induced protein X10A [Vitis vinifera]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 79/101 (78%), Gaps = 3/101 (2%)

Query: 1   MGFRLPGIVQAKKILR-QSSFKASQSAMTAT--EVPKGYLAVYVGENEMKRFMIPVSYLN 57
           MGFR P I+QAK+IL+  S     QS+++AT  EVPKG+ AVYVGE E KRF++P+SYLN
Sbjct: 1   MGFRFPSIIQAKQILKLHSLLSRGQSSISATAAEVPKGHFAVYVGEAEKKRFVVPISYLN 60

Query: 58  QSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
              FQ LLS AEEEFGF+HPMGG+TIPC+ED FI+L SR N
Sbjct: 61  NPSFQKLLSHAEEEFGFNHPMGGVTIPCKEDAFINLTSRFN 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507018|ref|XP_004162911.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 76/99 (76%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFRLP IV AK+ L++SS   + ++    +VPKGY  VYVGE   KRF+IP+SYLNQ  
Sbjct: 1  MGFRLPRIVTAKQSLQRSSSTGNGASPKVVDVPKGYFTVYVGEEHKKRFVIPLSYLNQPS 60

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNE 99
          FQDLLSQAEEEFG++HPMGG+TIPC ED F+DL   LNE
Sbjct: 61 FQDLLSQAEEEFGYNHPMGGITIPCHEDEFLDLTQSLNE 99

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462771|ref|XP_003601667.1| Auxin-induced protein-like protein [Medicago truncatula] gi|355490715|gb|AES71918.1| Auxin-induced protein-like protein [Medicago truncatula]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 79/98 (80%), Gaps = 8/98 (8%)

Query: 1  MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
          MGFRLP I       R++SF +SQ++  A  VPKGYLAVYVGE +MKRF+IP+SYLNQ+ 
Sbjct: 1  MGFRLPAI-------RRTSFTSSQASSKAVNVPKGYLAVYVGE-QMKRFVIPMSYLNQAS 52

Query: 61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
          FQ+LLSQAEEEFG+ HPMGGLTIPC EDIF+++ SR N
Sbjct: 53 FQNLLSQAEEEFGYDHPMGGLTIPCTEDIFMEITSRFN 90

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.98	0.989	0.646	1.4e-30
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.88	0.967	0.572	2.9e-23
TAIR|locus:2161518	90	SAUR23 "AT5G18060" [Arabidopsi	0.84	0.933	0.593	2.9e-23
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.89	0.988	0.577	3.8e-23
TAIR|locus:2161573	90	SAUR22 "AT5G18050" [Arabidopsi	0.83	0.922	0.588	6.1e-23
TAIR|locus:2116895	105	AT4G34810 "AT4G34810" [Arabido	0.97	0.923	0.538	1.6e-22
TAIR|locus:4515103510	89	AT4G38825 "AT4G38825" [Arabido	0.88	0.988	0.575	1.6e-22
TAIR|locus:2161538	90	SAUR19 "AT5G18010" [Arabidopsi	0.89	0.988	0.577	1.6e-22
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.73	0.829	0.657	1.6e-22
TAIR|locus:2116860	104	AT4G34770 [Arabidopsis thalian	0.98	0.942	0.588	2.6e-22

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 64/99 (64%), Positives = 80/99 (80%)

Query:     1 MGFRLPGIVQA-KKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQS 59
             M  R+P ++Q+ K+ILRQ+   +S S+ ++ +VPKGYLAVYVGE  MKRF++PVSYL+Q 
Sbjct:     1 MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query:    60 PFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
              FQDLL +AEEEFGF HPMGGLTIPC E+IFIDL SR N
Sbjct:    61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRFN 99

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 55/96 (57%), Positives = 71/96 (73%)

Query:     1 MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
             M F +  ++ AKKIL       S+S   A+  PKG+LAVYVGE++ KR+++P+SYLNQ  
Sbjct:     1 MAF-VRSLLGAKKIL-------SRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPS 52

Query:    61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISR 96
             FQ LLS++EEEFGF HPMGGLTIPC ED FI++ SR
Sbjct:    53 FQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSR 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/91 (59%), Positives = 70/91 (76%)

Query:     8 IVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQ 67
             ++ AKKIL       S+SA   +  PKG+LAVYVGE++ KR+++P+SYLNQ  FQ LLS+
Sbjct:     7 LLVAKKIL-------SRSAAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSK 59

Query:    68 AEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
             +EEEFGF HPMGGLTIPC ED FI++ SRL+
Sbjct:    60 SEEEFGFDHPMGGLTIPCPEDTFINVTSRLH 90

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 56/97 (57%), Positives = 71/97 (73%)

Query:     1 MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
             M F +  ++ AKKIL       S+S    +  PKG+LAVYVGE++ KR+++PVSYLNQ  
Sbjct:     1 MAF-VRSLLGAKKIL-------SRSTGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPS 52

Query:    61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRL 97
             FQ LLS++EEEFGF HPMGGLTIPC ED FI++ SRL
Sbjct:    53 FQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 53/90 (58%), Positives = 72/90 (80%)

Query:     8 IVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQ 67
             ++ AKKIL +S+     +A++A   PKG+LAVYVGE++ KR+++P+SYLNQ  FQ LLS+
Sbjct:     7 LLGAKKILSRST-----AAVSAA--PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSK 59

Query:    68 AEEEFGFHHPMGGLTIPCREDIFIDLISRL 97
             +E+EFGF HPMGGLTIPC ED FI++ SRL
Sbjct:    60 SEDEFGFDHPMGGLTIPCHEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/104 (53%), Positives = 76/104 (73%)

Query:     1 MGFRLPGIVQA-KKILRQSSF--KASQSAMTATEVPKGYLAVYVGEN---EMKRFMIPVS 54
             MG     I  A K+IL+ +S   +   S+ ++  VPKG++AVYVGE    E KRF++P+S
Sbjct:     1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query:    55 YLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLI-SRL 97
             +LN   F++ LS+AEEEFGF+HPMGGLTIPCRE++F+DLI SRL
Sbjct:    61 FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRL 104

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:4515103510 AT4G38825 "AT4G38825" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 57/99 (57%), Positives = 72/99 (72%)

Query:     1 MG-FRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQS 59
             MG FR  G++ AKKI +  S  AS         PKG+LAVYVGE++MKR+++PVSYLNQ 
Sbjct:     1 MGVFR--GLMGAKKIFQGRSMAAS--------TPKGFLAVYVGESQMKRYIVPVSYLNQP 50

Query:    60 PFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
              FQ LLS++E+EFGF HPMGGLTIPC  D FI + S+L+
Sbjct:    51 SFQALLSKSEQEFGFDHPMGGLTIPCPVDTFITVTSQLH 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161538 SAUR19 "AT5G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/97 (57%), Positives = 74/97 (76%)

Query:     1 MGFRLPGIVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSP 60
             M F +  ++ AKKIL +S+  A+ SA      PKG+LAVYVGE++ KR+++P+SYL+Q  
Sbjct:     1 MAF-VRSLLGAKKILSRST--AAGSA-----APKGFLAVYVGESQKKRYLVPLSYLSQPS 52

Query:    61 FQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRL 97
             FQ LLS++EEEFGF HPMGGLTIPC ED FI++ SRL
Sbjct:    53 FQALLSKSEEEFGFAHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 48/73 (65%), Positives = 61/73 (83%)

Query:    25 SAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIP 84
             S  TA+  PKG+LAVYVGE++ KR+++P+SYL+Q  FQ LLS++EEEFGF HPMGGLTIP
Sbjct:    15 SRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTIP 74

Query:    85 CREDIFIDLISRL 97
             C ED FI++ SRL
Sbjct:    75 CPEDTFINVTSRL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116860 AT4G34770 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 60/102 (58%), Positives = 73/102 (71%)

Query:     1 MGFRLPGIVQAKKILRQS-SFK-ASQSAMTATE-VPKGYLAVYVGEN-EMKRFMIPVSYL 56
             MG +L G+ QAK+ L++S S + AS  A + T  VPKG++AVYVGE    KRF+IP+SYL
Sbjct:     1 MGIQLIGLSQAKQKLQRSLSARIASLLATSGTNNVPKGHVAVYVGETYHRKRFVIPISYL 60

Query:    57 NQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98
             N   FQ LL+ AEEEFGF HPMGGLTIPC ED F  L S L+
Sbjct:    61 NHPLFQGLLNLAEEEFGFDHPMGGLTIPCTEDYFTALASILS 102

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.61	0.92	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025081001 SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (103 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-37
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	9e-30
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	2e-26
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	2e-24

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  121 bits (306), Expect = 1e-37
 Identities = 47/100 (47%), Positives = 61/100 (61%), Gaps = 5/100 (5%)

Query: 1  MGFRLPGIVQAKKILRQ---SSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLN 57
          M  RL     AKK +        + S S  ++ +VPKG+ AVYVGE E +RF++P+SYLN
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGE-ETRRFVVPISYLN 59

Query: 58 QSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRL 97
             FQ+LL +AEEEFGF    GGLTIPC   +F  L+  L
Sbjct: 60 HPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score =  101 bits (253), Expect = 9e-30
 Identities = 52/92 (56%), Positives = 72/92 (78%), Gaps = 6/92 (6%)

Query: 12  KKILRQSSF--KASQSAMTATEVPKGYLAVYVGEN---EMKRFMIPVSYLNQSPFQDLLS 66
           K+IL+ +S   +   S+ ++  VPKG++AVYVGE    E KRF++P+S+LN   F++ LS
Sbjct: 13  KQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLS 72

Query: 67  QAEEEFGFHHPMGGLTIPCREDIFIDLI-SRL 97
           +AEEEFGF+HPMGGLTIPCRE++F+DLI SRL
Sbjct: 73  RAEEEFGFNHPMGGLTIPCREEVFLDLIASRL 104

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 93.7 bits (232), Expect = 2e-26
 Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 8/103 (7%)

Query: 1   MGFRLPGIVQAKKILRQSSFK-----ASQSAMTATE--VPKGYLAVYVGEN-EMKRFMIP 52
           MG     +  AK+I +  S +     +S S+ T T   VPKG++AVYVGE  E KRF++P
Sbjct: 1   MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVP 60

Query: 53  VSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLIS 95
           +SYLN   F++ L++AEEE GFHH MGGLTIPCRE+ F+ LI+
Sbjct: 61  ISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLIT 103

Length = 108

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 88.3 bits (219), Expect = 2e-24
 Identities = 46/98 (46%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 4   RLPGIVQAKKIL-RQSSFKASQS---AMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQS 59
           +L      K+IL R SS    Q         +VPKG+  VYVGEN   R+++P+S+L   
Sbjct: 8   KLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENR-SRYIVPISFLTHP 66

Query: 60  PFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRL 97
            FQ LL QAEEEFGF H M GLTIPC E +F  L S +
Sbjct: 67  EFQSLLQQAEEEFGFDHDM-GLTIPCEEVVFRSLTSMI 103

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	85.34
PRK02899	197	adaptor protein; Provisional	83.43
PF02100	108	ODC_AZ: Ornithine decarboxylase antizyme; InterPro	80.73

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=6.1e-41  Score=232.26  Aligned_cols=91  Identities=46%  Similarity=0.779  Sum_probs=83.8

Q ss_pred             cchhHHHHHHHhhccccccccc----cccccCCCceEEEEecCCcceEEEEEecccCChhHHHHHHHHHHhhCcccCCCc
Q 046390            5 LPGIVQAKKILRQSSFKASQSA----MTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGG   80 (100)
Q Consensus         5 ~~~~~~~k~~l~r~~~~~~~~~----~~~~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~   80 (100)
                      |..++++|++|+||.|.++.++    ..+.+||+||||||||+++ +||+||++|||||.|++||++|||||||+|+ |+
T Consensus         9 i~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~-~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~-G~   86 (104)
T PLN03090          9 LTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENR-SRYIVPISFLTHPEFQSLLQQAEEEFGFDHD-MG   86 (104)
T ss_pred             hhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCC-EEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC-Cc
Confidence            4457899999999999887643    3677999999999999987 9999999999999999999999999999998 99


Q ss_pred             eeeeccHHHHHHHHHHH
Q 046390           81 LTIPCREDIFIDLISRL   97 (100)
Q Consensus        81 L~IPC~~~~Fe~vl~~l   97 (100)
                      |+|||+++.|++++|+|
T Consensus        87 L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         87 LTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             EEEeCCHHHHHHHHHHh
Confidence            99999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=3.4e-40  Score=228.74  Aligned_cols=96  Identities=54%  Similarity=0.993  Sum_probs=84.6

Q ss_pred             CCcccchhH-HHHHHHhhccccccc--cccccccCCCceEEEEecCC---cceEEEEEecccCChhHHHHHHHHHHhhCc
Q 046390            1 MGFRLPGIV-QAKKILRQSSFKASQ--SAMTATEVPKGYLAVYVGEN---EMKRFMIPVSYLNQSPFQDLLSQAEEEFGF   74 (100)
Q Consensus         1 ~~~~~~~~~-~~k~~l~r~~~~~~~--~~~~~~~vpkG~~aVyVG~~---~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~   74 (100)
                      ||+++|.|. +.|++|+|++...++  +++.+.+|||||||||||++   ..+|||||++|||||.|++||++|||||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf   80 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF   80 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            999999999 559999999854432  34577899999999999983   239999999999999999999999999999


Q ss_pred             ccCCCceeeeccHHHHHHHHHH
Q 046390           75 HHPMGGLTIPCREDIFIDLISR   96 (100)
Q Consensus        75 ~~~~G~L~IPC~~~~Fe~vl~~   96 (100)
                      +|++|+|+|||+++.|+++++.
T Consensus        81 ~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         81 NHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCEEeeCCHHHHHHHHHh
Confidence            9966999999999999999864

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=1.9e-37  Score=212.60  Aligned_cols=96  Identities=49%  Similarity=0.791  Sum_probs=81.9

Q ss_pred             CCcccchhHHHHHHHhhccccccc----cccccccCCCceEEEEecCCcceEEEEEecccCChhHHHHHHHHHHhhCccc
Q 046390            1 MGFRLPGIVQAKKILRQSSFKASQ----SAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHH   76 (100)
Q Consensus         1 ~~~~~~~~~~~k~~l~r~~~~~~~----~~~~~~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~   76 (100)
                      |-.++..+..+++..+++....+.    .++...++|+||||||||+++ +||+||++|||||.|++||++|||||||+|
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~-~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~   79 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEER-RRFVVPVSYLNHPLFQELLEQAEEEFGFDQ   79 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccc-eEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence            556777777777777665543322    123358999999999999987 999999999999999999999999999999


Q ss_pred             CCCceeeeccHHHHHHHHHHHh
Q 046390           77 PMGGLTIPCREDIFIDLISRLN   98 (100)
Q Consensus        77 ~~G~L~IPC~~~~Fe~vl~~l~   98 (100)
                      + |+|+|||+++.|++++|+|+
T Consensus        80 ~-G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   80 D-GPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             C-CcEEeeCCHHHHHHHHHHhC
Confidence            7 99999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=5e-35  Score=203.78  Aligned_cols=70  Identities=61%  Similarity=1.098  Sum_probs=64.5

Q ss_pred             cccccCCCceEEEEecCC-cceEEEEEecccCChhHHHHHHHHHHhhCcccCCCceeeeccHHHHHHHHHH
Q 046390           27 MTATEVPKGYLAVYVGEN-EMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISR   96 (100)
Q Consensus        27 ~~~~~vpkG~~aVyVG~~-~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~   96 (100)
                      +.+.+|||||+|||||++ ..+||+||++|||||+|++||++|||||||+|++|+|+|||+++.|+++++.
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            466889999999999983 2499999999999999999999999999999866999999999999999985

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=85.34  E-value=1.3  Score=28.46  Aligned_cols=57  Identities=19%  Similarity=0.187  Sum_probs=41.3

Q ss_pred             EEecCCcceEEEEEecccC-Ch--hHHHHHHHHHHhhCcccCCCceeeeccHHHHHHHHHHHhc
Q 046390           39 VYVGENEMKRFMIPVSYLN-QS--PFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLNE   99 (100)
Q Consensus        39 VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~   99 (100)
                      +=||.   ++|.++.+-|. +|  .|..+++....... +.+.|.+-|-++...|++|+..+..
T Consensus         3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~-~~~~~~~fiDRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDY-DDDDGEYFIDRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGE-ETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred             EEECC---EEEEEcHHHHhhCCCChhhhHHhhcccccc-CCccceEEeccChhhhhHHHHHHhh
Confidence            44775   77999999887 54  68888886522222 2234999999999999999998763

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=83.43  E-value=0.95  Score=34.16  Aligned_cols=24  Identities=29%  Similarity=0.732  Sum_probs=20.7

Q ss_pred             hhHHHHHHHHHHhhCcccCCCceee
Q 046390           59 SPFQDLLSQAEEEFGFHHPMGGLTI   83 (100)
Q Consensus        59 P~F~~LL~~aeEEfG~~~~~G~L~I   83 (100)
                      -+|.++|++|..|+||.-+ |||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccC-CeEEE
Confidence            3577789999999999987 99986

>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis

Probab=80.73  E-value=3  Score=28.77  Aligned_cols=49  Identities=31%  Similarity=0.369  Sum_probs=25.6

Q ss_pred             eEEE-EEecccCC---hhHHHHHHHHHHhhCcccCCCceeeeccHHHHHHHHHHH
Q 046390           47 KRFM-IPVSYLNQ---SPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRL   97 (100)
Q Consensus        47 ~Rfv-Vp~~~L~h---P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l   97 (100)
                      .=|| +|-+.+.+   ..|.+|||.|||++|.++  -.+.++=+-.....++..+
T Consensus        25 ~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~l   77 (108)
T PF02100_consen   25 TLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRTL   77 (108)
T ss_dssp             EEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHHH
T ss_pred             EEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhhc
Confidence            5555 45544443   459999999999999876  5677776655555555443

ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00