Citrus Sinensis ID: 046494

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720----

MTVTAKATIIKDGCLMVRGNVVLTGVPQNVVVSPSSFIGATSAAPPSSRHVFTLGVLPDGYRFLCLFRFKIWWMIPRVGKSASEVPMETQMLLLEAREDSPLDADAASDNTFYILLLPVLDGQFRATLQGTPTNDLQFCVESGDSSVQTSEAFEAVFINSGDNPFELIKDSIKILEKHKGTFSHLENKKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLVIDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKENCKFNSSGSDNSCNDLHEFIDEIKEKYGLKYVYMWHALAGYWGGVLPSSDIMKKDIAMDSLEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYSLYSSMKSAVARASEDFMPGEPTFQTLHIASVAFNSLLLGEIVVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKRLVLPDGSVLRARHAGRPTRDCLFEDPVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSWPMKEDMHRKPASPLSISGHVCPLDIEFLERVAGENWNGDCAVYAFNSGVLTKLPKKGNLEVSLATLKCEIYTICPIRVLGQDLLFAPIGLLDMYNSGGAVESFEYIMDLSKYIIKIKGKGCGRFGAYSSSKPKCCMVDTKEEEFTYNAEDGLLTVKLPGECTLRDIEFVY

ccccccEEEEEccEEEEccEEEEccccccEEEccccccccccccccccccEEEEccccccEEEEEEEEEccccccccccccccccccccEEEEEEccccccccccccccccEEEEEEEEEcccEEEEEcccccccEEEEEEccccEEEcccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccEEEEccccccccHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHccccccccEEEEEEEccEEEEccccccEEEEEccccEEEEEEEEEEEEcccEEEEEEcccccccccccEEEEEEEEcccEEEEEEEEEEcEEEEEEEcccccEEEEccEEEEEEEEccccEEEEEccccccEEEEEEEc

ccccccEEEEcccEEEEccEEEEccccccEEEccccEEcccccccccccEEEEccccccccEEEEEEEEEEHHHccccccccccccHcEEEEEEEccccccccccccccccEEEEEEEEEcccEEEEEEcccccEEEEEEEccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHccccHHHHccccHHHHccccccHHHHHccccHHHHHHHHHHHHHcccccEEEEEEccccEcccccccccHcccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccEEEEEHHHHccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHcccccHEEEccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccEEEEcccccccHHHHHHHccccccEEccccccccccHHccccccccccEEEEEEEcccccEEEEEEEccccccccccccccccccccccEEEEEcHHHcccccccccccccccEEEEEEcccEEEEccccccEEEEEccccEEEEEEEEEEEcccccEEEEEEEHHccccccEEEEEEEEccccEEEEEEEEEEcEEEEEEEcccccEEEEccEEEEEEEcccccEEEEEccccccccEEEEEc

MTVTAKATiikdgclmVRGNVvltgvpqnvvvspssfigatsaappssrhvftlgvlpdgyrFLCLFRFKiwwmiprvgksasevpMETQMLLLEAredspldadaasdntFYILLLPVldgqfratlqgtptndlqfcvesgdssvqtSEAFEAVfinsgdnpfeLIKDSIKILEKHkgtfshlenkkiprhldwfgwctwdAFYKQVNPQGIKEGLhsfleggcsprflvidDGWQETINEFckdgepliegTQFAIRLVDIkenckfnssgsdnscnDLHEFIDEIKEKYGLKYVYMWHALAgywggvlpssdimkkDIAMDSLEkygvgiidpqkIFDFYNDLHSYLansgvdgvKVDVQSLMETlgsgyggrVLLTRQYQQALEQSVAwnfkdnnliccmshnsyslYSSMKSAVARasedfmpgeptfqtLHIASVAFNSLLLgeivvpdwdmfqskheTAEFHATARALggcavyvsdkpgvhdfkilkrlvlpdgsvlrarhagrptrdclfedpvmdgksLLKIWNLNKLSGVIGvfncqgagswpmkedmhrkpasplsisghvcpldIEFLERVagenwngdcavyafnsgvltklpkkgnlEVSLATLKceiyticpirvlgqdllfapiglldmynsggavesFEYIMDLSKYIIKIKGkgcgrfgayssskpkccmvdtkeeeftynaedglltvklpgectlrdiefvy

mtvtakatiikdgclmVRGNVVLTGVPQNVVVSPSSFIGATSAAPPSSRHVFTLGVLPDGYRFLCLFRFKIWWMIPRVGKSASEVPMETQMLLLEAREDSPLDADAASDNTFYILLLPVLDGQFRATLQGTPTNDLQFCVESGDSSVQTSEAFEAvfinsgdnpFELIKDSIKILEKHKGTFSHLENKKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLVIDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKENCKfnssgsdnscndLHEFIDEIKEKYGLKYVYMWHALAGYWGGVLPSSDIMKKDIAMDSLEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYSLYSSMKSAVARASEDFMPGEPTFQTLHIASVAFNSLLLGEIVVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILkrlvlpdgsvlrarhagrptrdclfedpVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSWPMKEDMHRKPASPLSISGHVCPLDIEFLERVAGENWNGDCAVYAFNSGVLTKLPKKGNLEVSLATLKCEIYTICPIRVLGQDLLFAPIGLLDMYNSGGAVESFEYIMDLSKYIIKIKGKGCGRFGAYSSSKPKCCMVDTKEEEFTynaedglltvklpgectlrdiefvy

MTVTAKATIIKDGCLMVRGNVVLTGVPQNVVVSPSSFIGATSAAPPSSRHVFTLGVLPDGYRFLCLFRFKIWWMIPRVGKSASEVPMETQMLLLEAREDSPLDADAASDNTFYILLLPVLDGQFRATLQGTPTNDLQFCVESGDSSVQTSEAFEAVFINSGDNPFELIKDSIKILEKHKGTFSHLENKKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLVIDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKENCKFNSSGSDNSCNDLHEFIDEIKEKYGLKYVYMWHALAGYWGGVLPSSDIMKKDIAMDSLEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYSLYSSMKSAVARASEDFMPGEPTFQTLHIASVAFNSLLLGEIVVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKRLVLPDGSVLRARHAGRPTRDCLFEDPVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSWPMKEDMHRKPASPLSISGHVCPLDIEFLERVAGENWNGDCAVYAFNSGVLTKLPKKGNLEVSLATLKCEIYTICPIRVLGQDLLFAPIGLLDMYNSGGAVESFEYIMDLSKYiikikgkgcgRFGAYSSSKPKCCMVDTKEEEFTYNAEDGLLTVKLPGECTLRDIEFVY

*****KATIIKDGCLMVRGNVVLTGVPQNVVVSPSSFIGAT******SRHVFTLGVLPDGYRFLCLFRFKIWWMIPRVGK****************************DNTFYILLLPVLDGQFRATLQGTPTNDLQFCVESG***VQTSEAFEAVFINSGDNPFELIKDSIKILEKHKGTFSHLENKKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLVIDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKENCKFNSSGSDNSCNDLHEFIDEIKEKYGLKYVYMWHALAGYWGGVLPSSDIMKKDIAMDSLEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYSLYSSMK*********FMPGEPTFQTLHIASVAFNSLLLGEIVVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKRLVLPDGSVLRARHAGRPTRDCLFEDPVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSWP************LSISGHVCPLDIEFLERVAGENWNGDCAVYAFNSGVLTKLPKKGNLEVSLATLKCEIYTICPIRVLGQDLLFAPIGLLDMYNSGGAVESFEYIMDLSKYIIKIKGKGCGRFGAYSSSKPKCCMVDTKEEEFTYNAEDGLLTVKLPGECTLRDIEFV*

*******TIIKDGCLMVRGNVVLTGVPQNVVVSPSSF*************VFTLGVLPDGYRFLCLFRFKIWWMIPRVGKSASEVPMETQMLLLEAREDSPLDADAASDNTFYILLLPVLDGQFRATLQGTPTNDLQFCVESGDSSVQTSEAFEAVFINSGDNPFELIKDSIKIL************KKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLVIDDGWQETINEFCKDGEPLIEGTQFAIRLVD**************SCNDLHEFIDEIKEKYGLKYVYMWHALAGYWGGVLPSSDIMKKDIAMDSLEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYSLYSSMKSAVARASEDFMPGEPTFQTLHIASVAFNSLLLGEIVVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKRLVLPDGSVLRARHAGRPTRDCLFEDPVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSWPMKEDMHRKPASPLSISGHVCPLDIEFLERVAGENWNGDCAVYAFNSGVLT********EVSLATLKCEIYTICPIRVLGQDLLFAPIGLLDMYNSGGAVESFEYIMDLSKYIIKIKGKGCGRFGAYSSSKPKCCMVDTKEEEFTYNAEDGLLTVKLPGECTLRDIEFVY

MTVTAKATIIKDGCLMVRGNVVLTGVPQNVVVSPSSF**********SRHVFTLGVLPDGYRFLCLFRFKIWWMIPRVGKSASEVPMETQMLLLEAREDSPLDADAASDNTFYILLLPVLDGQFRATLQGTPTNDLQFCVESGDSSVQTSEAFEAVFINSGDNPFELIKDSIKILEKHKGTFSHLENKKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLVIDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKENCKFNSSGSDNSCNDLHEFIDEIKEKYGLKYVYMWHALAGYWGGVLPSSDIMKKDIAMDSLEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYSLYSSMKSAVARASEDFMPGEPTFQTLHIASVAFNSLLLGEIVVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKRLVLPDGSVLRARHAGRPTRDCLFEDPVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSWPMKEDMHRKPASPLSISGHVCPLDIEFLERVAGENWNGDCAVYAFNSGVLTKLPKKGNLEVSLATLKCEIYTICPIRVLGQDLLFAPIGLLDMYNSGGAVESFEYIMDLSKYIIKIKGKGCGRFGAYSSSKPKCCMVDTKEEEFTYNAEDGLLTVKLPGECTLRDIEFVY

*TVTAKATIIKDGCLMVRGNVVLTGVPQNVVVSPSSFIGATSAAPPSSRHVFTLGVLPDGYRFLCLFRFKIWWMIPRVGKSASEVPMETQMLLLEAREDSP******SDNTFYILLLPVLDGQFRATLQGTPTNDLQFCVESGDSSVQTSEAFEAVFINSGDNPFELIKDSIKILEKHKGTFSHLENKKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLVIDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKENCKFNSSGSDNSCNDLHEFIDEIKEKYGLKYVYMWHALAGYWGGVLPSSDIMKKDIAMDSLEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYSLYSSMKSAVARASEDFMPGEPTFQTLHIASVAFNSLLLGEIVVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKRLVLPDGSVLRARHAGRPTRDCLFEDPVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSWPMKEDMHRKPASPLSISGHVCPLDIEFLERVAGENWNGDCAVYAFNSGVLTKLPKKGNLEVSLATLKCEIYTICPIRVLGQDLLFAPIGLLDMYNSGGAVESFEYIMDLSKYIIKIKGKGCGRFGAYSSSKPKCCMVDTKEEEFTYNAEDGLLTVKLPGECTLRDIEFVY

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		724	2.2.26 [Sep-21-2011]
Q94A08		773	Probable galactinol--sucr	yes	no	0.976	0.914	0.487	0.0
Q84VX0		754	Probable galactinol--sucr	no	no	0.973	0.935	0.481	0.0
Q8RX87		749	Probable galactinol--sucr	no	no	0.959	0.927	0.455	0.0
Q8VWN6		798	Galactinol--sucrose galac	N/A	no	0.935	0.848	0.392	1e-143
Q9FND9		783	Probable galactinol--sucr	no	no	0.957	0.885	0.375	1e-142
Q5VQG4		783	Galactinol--sucrose galac	no	no	0.959	0.887	0.374	1e-141
Q93XK2		853	Stachyose synthase OS=Pis	N/A	no	0.604	0.513	0.362	8e-79
Q9SYJ4		876	Probable galactinol--sucr	no	no	0.609	0.503	0.352	8e-75
Q97U94		648	Alpha-galactosidase OS=Su	yes	no	0.517	0.578	0.297	2e-37

>sp\|Q94A08\|RFS2_ARATH Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2	Back alignment and function desciption

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/763 (48%), Positives = 516/763 (67%), Gaps = 56/763 (7%)

Query: 1   MTVTAKATIIKDGCLMVRGNVVLTGVPQNVVVSP--------SSFIGATSAAPPSSRHVF 52
           MT+T+  ++  D  L+V+G  +LT +P N++++P         SFIGAT      S HVF
Sbjct: 1   MTITSNISVQNDN-LVVQGKTILTKIPDNIILTPVTGNGFVSGSFIGATFEQS-KSLHVF 58

Query: 53  TLGVLPDGYRFLCLFRFKIWWMIPRVGKSASEVPMETQMLLLEAREDSPLDADAASDNTF 112
            +GVL +G RF+C FRFK+WWM  R+G    ++P+ETQ +LLE++++   + D A   T 
Sbjct: 59  PIGVL-EGLRFMCCFRFKLWWMTQRMGSCGKDIPLETQFMLLESKDEVEGNGDDAP--TV 115

Query: 113 YILLLPVLDGQFRATLQGTPTNDLQFCVESGDSSVQTSEAFEAVFINSGDNPFELIKDSI 172
           Y + LP+L+GQFRA LQG   N+++ C ESGD +V+TS+    V++++G NPFE+I+ S+
Sbjct: 116 YTVFLPLLEGQFRAVLQGNEKNEIEICFESGDKAVETSQGTHLVYVHAGTNPFEVIRQSV 175

Query: 173 KILEKHKGTFSHLENKKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLV 232
           K +E+H  TF H E KK+P  LDWFGWCTWDAFY  V  +G+ EGL S  EGG  P+FL+
Sbjct: 176 KAVERHMQTFHHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPPKFLI 235

Query: 233 IDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKENCKFNSSGS-DNSCNDLHEFIDEIKE 291
           IDDGWQ+  N+   +   + EG QFA RLV IKEN KF  S   D   + L   +D  K+
Sbjct: 236 IDDGWQQIENKEKDENCVVQEGAQFATRLVGIKENAKFQKSDQKDTQVSGLKSVVDNAKQ 295

Query: 292 KYGLKYVYMWHALAGYWGGVLPSSDIMKK-------------------DIAMDSLEKYGV 332
           ++ +K VY WHALAGYWGGV P++  M+                    DI MDSL  +G+
Sbjct: 296 RHNVKQVYAWHALAGYWGGVKPAASGMEHYDSALAYPVQSPGVLGNQPDIVMDSLAVHGL 355

Query: 333 GIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQALEQSV 392
           G+++P+K+F+FYN+LHSYLA+ G+DGVKVDVQ+++ETLG+G GGRV LTR YQQALE S+
Sbjct: 356 GLVNPKKVFNFYNELHSYLASCGIDGVKVDVQNIIETLGAGLGGRVSLTRSYQQALEASI 415

Query: 393 AWNFKDNNLICCMSHNSYSLYSSMKSAVARASEDFMPGEPTFQTLHIASVAFNSLLLGEI 452
           A NF DN  I CM HN+  LYS+ ++A+ RAS+DF P +P   T+HIASVA+NSL LGE 
Sbjct: 416 ARNFTDNGCISCMCHNTDGLYSAKQTAIVRASDDFYPRDPASHTIHIASVAYNSLFLGEF 475

Query: 453 VVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKRLVLPDGSVLRARHAG 512
           + PDWDMF S H TAE+HA ARA+GGCA+YVSDKPG H+F +L++LVLPDGSVLRA+  G
Sbjct: 476 MQPDWDMFHSLHPTAEYHAAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAKLPG 535

Query: 513 RPTRDCLFEDPVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSWPMKEDMHRKPASPLSISG 572
           RPTRDCLF DP  DG SLLKIWN+NK +G++GVFNCQGAG     +       SP +++G
Sbjct: 536 RPTRDCLFADPARDGISLLKIWNMNKFTGIVGVFNCQGAGWCKETKKNQIHDTSPGTLTG 595

Query: 573 HVCPLDIEFLERVAGENWNGDCAVYAFNSGVLTKLPKKGNLEVSLATLKCEIYTICPIRV 632
            +   D + + +VAGE+W+GD  VYA+ SG + +LPK  ++ ++L  L+ E++ I P++ 
Sbjct: 596 SIRADDADLISQVAGEDWSGDSIVYAYRSGEVVRLPKGASIPLTLKVLEYELFHISPLKE 655

Query: 633 LGQDLLFAPIGLLDMYNSGGAVESFE--YIMDLS---------------------KYIIK 669
           + +++ FAPIGL+DM+NS GA+ES +  ++ D +                       ++ 
Sbjct: 656 ITENISFAPIGLVDMFNSSGAIESIDINHVTDKNPEFFDGEISSASPALSDNRSPTALVS 715

Query: 670 IKGKGCGRFGAYSSSKPKCCMVDTKEEEFTYNAEDGLLTVKLP 712
           +  +GCGRFGAYSS +P  C V++ E +FTY+AE GL+T+ LP
Sbjct: 716 VSVRGCGRFGAYSSQRPLKCAVESTETDFTYDAEVGLVTLNLP 758

Transglycosidase operating by a ping-pong reaction mechanism. Involved in the synthesis of raffinose, a major soluble carbohydrate in seeds, roots and tubers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 8EC: 2

>sp\|Q84VX0\|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1	Back alignment and function description

>sp\|Q8RX87\|RFS6_ARATH Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2	Back alignment and function description

>sp\|Q8VWN6\|RFS_PEA Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1	Back alignment and function description

>sp\|Q9FND9\|RFS5_ARATH Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1	Back alignment and function description

>sp\|Q5VQG4\|RFS_ORYSJ Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1	Back alignment and function description

>sp\|Q93XK2\|STSYN_PEA Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1	Back alignment and function description

>sp\|Q9SYJ4\|RFS4_ARATH Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=3	Back alignment and function description

>sp\|Q97U94\|AGAL_SULSO Alpha-galactosidase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=galS PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		724
224133736		752	predicted protein [Populus trichocarpa]	0.991	0.954	0.753	0.0
356507309		749	PREDICTED: probable galactinol--sucrose	0.990	0.957	0.711	0.0
225456842		750	PREDICTED: probable galactinol--sucrose	0.995	0.961	0.711	0.0
147838354		1122	hypothetical protein VITISV_039575 [Viti	0.965	0.622	0.714	0.0
449440614		749	PREDICTED: probable galactinol--sucrose	0.991	0.958	0.679	0.0
449525734		749	PREDICTED: probable galactinol--sucrose	0.991	0.958	0.678	0.0
255540447		685	hydrolase, hydrolyzing O-glycosyl compou	0.928	0.981	0.685	0.0
38345247		738	OSJNBb0011N17.8 [Oryza sativa Japonica G	0.965	0.947	0.610	0.0
90265053		738	H0510A06.3 [Oryza sativa Indica Group] g	0.965	0.947	0.610	0.0
296085757		739	unnamed protein product [Vitis vinifera]	0.975	0.955	0.576	0.0

>gi\|224133736\|ref\|XP_002321648.1\| predicted protein [Populus trichocarpa] gi\|222868644\|gb\|EEF05775.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1169 bits (3023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/756 (75%), Positives = 647/756 (85%), Gaps = 38/756 (5%)

Query: 3   VTAKAT-IIKDGCLMVRGNVVLTGVPQNVVVSPSS----FIGATSAAPPSSRHVFTLGVL 57
           +T KAT IIKDGCLMVRG VVL+ VPQN++VSP+S    F GATS +P SSRHVF+LGVL
Sbjct: 1   MTIKATPIIKDGCLMVRGKVVLSRVPQNILVSPASNGSAFFGATSPSP-SSRHVFSLGVL 59

Query: 58  PDGYRFLCLFRFKIWWMIPRVGKSASEVPMETQMLLLEAREDSPLD-----ADAASDNTF 112
            + YRFLCLFR KIWWMIPRVGKS SE+PMETQMLLLEA E+S L+     ++ ++DNTF
Sbjct: 60  -EKYRFLCLFRVKIWWMIPRVGKSGSEIPMETQMLLLEATEESALNDEVNSSETSTDNTF 118

Query: 113 YILLLPVLDGQFRATLQGTPTNDLQFCVESGDSSVQTSEAFEAVFINSGDNPFELIKDSI 172
           YIL LPVLDG FR++LQGT  N+L FCVESGD++VQTS+A EAVF+NSG+NPFELIK+S+
Sbjct: 119 YILFLPVLDGLFRSSLQGTSENELHFCVESGDANVQTSQALEAVFVNSGENPFELIKNSV 178

Query: 173 KILEKHKGTFSHLENKKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLV 232
           KILE+HKGTF H+ENKKIP HLDWFGWCTWDAFY QVNPQGIKEGL SFLEGGCSP+FL+
Sbjct: 179 KILEQHKGTFCHIENKKIPAHLDWFGWCTWDAFYTQVNPQGIKEGLQSFLEGGCSPKFLI 238

Query: 233 IDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKENCKFNSSGSDNSCNDLHEFIDEIKEK 292
           IDDGWQ+T+NEF K+GEPLIEGTQFA RLVDIKEN KF SSG D  C DLHEFID IKEK
Sbjct: 239 IDDGWQDTVNEFRKEGEPLIEGTQFATRLVDIKENGKFRSSGPDEGCTDLHEFIDTIKEK 298

Query: 293 YGLKYVYMWHALAGYWGGVLPSSDIMKK-------------------DIAMDSLEKYGVG 333
           YGLK+VYMWHALAGYWGGVLPSSD MKK                   DIAMDSLEKYGVG
Sbjct: 299 YGLKFVYMWHALAGYWGGVLPSSDSMKKYNPKLVYPIQSPGNVGNMRDIAMDSLEKYGVG 358

Query: 334 IIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQALEQSVA 393
           +IDP KIFDFYNDLHSYLA++GVDGVKVDVQ+L+ETLGSG GGRV LTRQYQ+ALE+S++
Sbjct: 359 VIDPSKIFDFYNDLHSYLASNGVDGVKVDVQNLIETLGSGCGGRVTLTRQYQEALERSIS 418

Query: 394 WNFKDNNLICCMSHNSYSLYSSMKSAVARASEDFMPGEPTFQTLHIASVAFNSLLLGEIV 453
            NFK+NNLICCMSHNS S+YSS +SA+ARASEDFMP EPTFQTLHIASVAFNS LLGEIV
Sbjct: 419 RNFKENNLICCMSHNSDSIYSSKRSAIARASEDFMPREPTFQTLHIASVAFNSFLLGEIV 478

Query: 454 VPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKRLVLPDGSVLRARHAGR 513
           VPDWDMF SKH+TA+FH  ARALGGCAVYVSDKPG+HDFKILK+LVLPDGS+LRARHAGR
Sbjct: 479 VPDWDMFHSKHDTADFHGAARALGGCAVYVSDKPGIHDFKILKKLVLPDGSILRARHAGR 538

Query: 514 PTRDCLFEDPVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSWPMK---EDMHRKPASPLSI 570
           PTRDCLFEDPVMD KSLLKIWNLNKL+GVIGVFNCQGAGSWPMK   E++   P+ P S+
Sbjct: 539 PTRDCLFEDPVMDAKSLLKIWNLNKLTGVIGVFNCQGAGSWPMKQEAEEIPTVPSGPSSL 598

Query: 571 SGHVCPLDIEFLERVAGENWNGDCAVYAFNSGVLTKLPKKGNLEVSLATLKCEIYTICPI 630
           SGHV P+D+EFL+ +AGE+WNGDCA+YAFNSG L+ LPKKG LEVSL TLK EIYTI PI
Sbjct: 599 SGHVSPIDVEFLDDIAGEDWNGDCAIYAFNSGSLSMLPKKGILEVSLTTLKYEIYTISPI 658

Query: 631 RVLGQDLLFAPIGLLDMYNSGGAVESFEYIMDLSKYIIKIKGKGCGRFGAYSSSKPKCCM 690
           +V GQ+L F+PIGLLDMYNSGGAVE+   I+D+S Y IK+ G+G GRFGAYS++KP  C 
Sbjct: 659 KVFGQNLQFSPIGLLDMYNSGGAVEAVNCIIDVSSYTIKVNGRGGGRFGAYSNTKPTFCR 718

Query: 691 VDTKEEEFTYNAEDGLLTVKLPGECT--LRDIEFVY 724
           VD KEEEFTYN ++GLL VKL  ECT  LR+IEF+Y
Sbjct: 719 VDMKEEEFTYNDKNGLLIVKL--ECTGNLREIEFIY 752

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356507309\|ref\|XP_003522410.1\| PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|225456842\|ref\|XP_002278889.1\| PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Vitis vinifera] gi\|297733664\|emb\|CBI14911.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147838354\|emb\|CAN61133.1\| hypothetical protein VITISV_039575 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449440614\|ref\|XP_004138079.1\| PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449525734\|ref\|XP_004169871.1\| PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255540447\|ref\|XP_002511288.1\| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gi\|223550403\|gb\|EEF51890.1\| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|38345247\|emb\|CAD41091.2\| OSJNBb0011N17.8 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|90265053\|emb\|CAH67678.1\| H0510A06.3 [Oryza sativa Indica Group] gi\|116309847\|emb\|CAH66883.1\| OSIGBa0158F13.14 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|296085757\|emb\|CBI29568.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		724
TAIR\|locus:2103488		773	SIP2 "AT3G57520" [Arabidopsis	0.462	0.433	0.574	2.3e-204
TAIR\|locus:2020452		754	SIP1 "AT1G55740" [Arabidopsis	0.534	0.513	0.525	2.6e-184
TAIR\|locus:2170528		783	SIP1 "AT5G40390" [Arabidopsis	0.556	0.514	0.391	4.6e-135
UNIPROTKB\|Q5VQG4		783	RFS "Galactinol--sucrose galac	0.548	0.507	0.413	3.3e-130
TAIR\|locus:2141425		876	STS "AT4G01970" [Arabidopsis t	0.548	0.453	0.354	5e-119
UNIPROTKB\|Q93XK2		853	STS1 "Stachyose synthase" [Pis	0.562	0.477	0.362	4.5e-105
ASPGD\|ASPL0000010056		863	aglF [Emericella nidulans (tax	0.589	0.494	0.288	1.4e-35
UNIPROTKB\|Q97U94		648	galS "Alpha-galactosidase" [Su	0.352	0.393	0.335	6.9e-34
UNIPROTKB\|G4NBB7		908	MGG_11554 "Seed imbibition pro	0.588	0.469	0.281	2e-31
UNIPROTKB\|Q8A170		693	BT_3797 "Possible alpha-galact	0.324	0.339	0.261	9.6e-19

TAIR\|locus:2103488 SIP2 "AT3G57520" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1077 (384.2 bits), Expect = 2.3e-204, Sum P(3) = 2.3e-204
 Identities = 196/341 (57%), Positives = 264/341 (77%)

Query:   321 DIAMDSLEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLL 380
             DI MDSL  +G+G+++P+K+F+FYN+LHSYLA+ G+DGVKVDVQ+++ETLG+G GGRV L
Sbjct:   344 DIVMDSLAVHGLGLVNPKKVFNFYNELHSYLASCGIDGVKVDVQNIIETLGAGLGGRVSL 403

Query:   381 TRQYQQALEQSVAWNFKDNNLICCMSHNSYSLYSSMKSAVARASEDFMPGEPTFQTLHIA 440
             TR YQQALE S+A NF DN  I CM HN+  LYS+ ++A+ RAS+DF P +P   T+HIA
Sbjct:   404 TRSYQQALEASIARNFTDNGCISCMCHNTDGLYSAKQTAIVRASDDFYPRDPASHTIHIA 463

Query:   441 SVAFNSLLLGEIVVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKRLVL 500
             SVA+NSL LGE + PDWDMF S H TAE+HA ARA+GGCA+YVSDKPG H+F +L++LVL
Sbjct:   464 SVAYNSLFLGEFMQPDWDMFHSLHPTAEYHAAARAVGGCAIYVSDKPGNHNFDLLRKLVL 523

Query:   501 PDGSVLRARHAGRPTRDCLFEDPVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSW---PMK 557
             PDGSVLRA+  GRPTRDCLF DP  DG SLLKIWN+NK +G++GVFNCQGAG W     K
Sbjct:   524 PDGSVLRAKLPGRPTRDCLFADPARDGISLLKIWNMNKFTGIVGVFNCQGAG-WCKETKK 582

Query:   558 EDMHRKPASPLSISGHVCPLDIEFLERVAGENWNGDCAVYAFNSGVLTKLPKKGNLEVSL 617
               +H    SP +++G +   D + + +VAGE+W+GD  VYA+ SG + +LPK  ++ ++L
Sbjct:   583 NQIH--DTSPGTLTGSIRADDADLISQVAGEDWSGDSIVYAYRSGEVVRLPKGASIPLTL 640

Query:   618 ATLKCEIYTICPIRVLGQDLLFAPIGLLDMYNSGGAVESFE 658
               L+ E++ I P++ + +++ FAPIGL+DM+NS GA+ES +
Sbjct:   641 KVLEYELFHISPLKEITENISFAPIGLVDMFNSSGAIESID 681

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0034484 "raffinose catabolic process" evidence=IDA

GO:0047274 "galactinol-sucrose galactosyltransferase activity" evidence=IDA

GO:0052692 "raffinose alpha-galactosidase activity" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR\|locus:2020452 SIP1 "AT1G55740" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2170528 SIP1 "AT5G40390" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VQG4 RFS "Galactinol--sucrose galactosyltransferase" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2141425 STS "AT4G01970" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q93XK2 STS1 "Stachyose synthase" [Pisum sativum (taxid:3888)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000010056 aglF [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|Q97U94 galS "Alpha-galactosidase" [Sulfolobus solfataricus P2 (taxid:273057)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NBB7 MGG_11554 "Seed imbibition protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8A170 BT_3797 "Possible alpha-galactosidase" [Bacteroides thetaiotaomicron VPI-5482 (taxid:226186)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94A08	RFS2_ARATH	2, ., 4, ., 1, ., 8, 2	0.4875	0.9765	0.9146	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		724
pfam05691		742	pfam05691, Raffinose_syn, Raffinose synthase or se	0.0
PLN02219		775	PLN02219, PLN02219, probable galactinol--sucrose g	0.0
PLN02355		758	PLN02355, PLN02355, probable galactinol--sucrose g	0.0
PLN02684		750	PLN02684, PLN02684, Probable galactinol--sucrose g	0.0
PLN02711		777	PLN02711, PLN02711, Probable galactinol--sucrose g	0.0
PLN02982		865	PLN02982, PLN02982, galactinol-raffinose galactosy	1e-118
PLN02982		865	PLN02982, PLN02982, galactinol-raffinose galactosy	2e-59

>gnl\|CDD\|218695 pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition protein Sip1	Back alignment and domain information

 Score =  844 bits (2183), Expect = 0.0
 Identities = 332/759 (43%), Positives = 465/759 (61%), Gaps = 76/759 (10%)

Query: 10  IKDGCLMVRGNVVLTGVPQNVVVSPSS----------------FIGATSAAPPSSRHVFT 53
           + DG L V+   +LT VP NV  +PS                 F+G T A  P SRHV +
Sbjct: 3   LSDGNLFVKNRTILTDVPDNVTSTPSPGADAPDPILAGSVKGGFVGFT-AEEPKSRHVNS 61

Query: 54  LGVLPDGYRFLCLFRFKIWWMIPRVGKSASEVPMETQMLLLEAREDSPLDADAASDNTFY 113
           +G L  G RF+ +FRFK+WWM   VG S S++ +ETQ +LLE+ E              Y
Sbjct: 62  IGKL-RGRRFMSIFRFKLWWMTQWVGTSGSDLQLETQFILLESPETKS-----------Y 109

Query: 114 ILLLPVLDGQFRATLQGTPTNDLQFCVESGDSSVQTSEAFEAVFINSGDNPFELIKDSIK 173
           ++ LP+L+G FR++LQ    ++++ C ESG ++V+TS     V++++G NPF+LIK+++K
Sbjct: 110 VVFLPLLEGSFRSSLQPGEDDEVEICAESGSTAVKTSSFTSIVYVHAGTNPFQLIKEAVK 169

Query: 174 ILEKHKGTFSHLENKKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLVI 233
            +  H  TF  LE K +P  +D FGWCTWDAFY  V P+G+ EGL S  +GG  PRF++I
Sbjct: 170 AVRVHLNTFKLLEEKTLPSIVDKFGWCTWDAFYLTVTPEGVWEGLKSLSDGGTPPRFVII 229

Query: 234 DDGWQETIN----EFCKDGEPLI-EGTQFAIRLVDIKENCKF----NSSGSDNSCNDLHE 284
           DDGWQ +I     +   D   L+ EG Q A RL   KEN KF      S   +S + +  
Sbjct: 230 DDGWQ-SIGHDGDDPNDDAMNLVLEGEQMAARLTGFKENYKFRKYDGGSLLSDSNSGMKA 288

Query: 285 FIDEIKEKY-GLKYVYMWHALAGYWGGVLPSS-----------------DIMKKDIAMDS 326
           F+D++K ++ G+  VY+WHAL GYWGGV P                        D+A+D 
Sbjct: 289 FVDDLKTEFKGVDDVYVWHALCGYWGGVRPEGMEHYDSKIAYPVLSPGLVGTMPDLAVDK 348

Query: 327 LEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQ 386
           + ++G+G++ P+K  +FY++LHSYLA++G+DGVKVDV  ++ETLG GYGGRV L + Y +
Sbjct: 349 IVEHGLGLVHPKKAHEFYDELHSYLASAGIDGVKVDVIHILETLGEGYGGRVELAKAYYK 408

Query: 387 ALEQSVAWNFKDNNLICCMSHNSYSLYSSMKS-AVARASEDFMPGEPT--------FQTL 437
           AL  S+A NF  N  I  M H +   +   K  +V R  +DF P +P          Q +
Sbjct: 409 ALTSSIAKNFNGNGCIASMQHCNDFFFLGTKQISVGRVGDDFWPRDPAGDPNGVFWLQGV 468

Query: 438 HIASVAFNSLLLGEIVVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKR 497
           H+   A+NSL +GE + PDWDMFQS H  AEFHA +RA+ G  +YVSD  G H+F +LK+
Sbjct: 469 HMIHCAYNSLWMGEFIQPDWDMFQSDHPCAEFHAASRAISGGPIYVSDSVGKHNFDLLKK 528

Query: 498 LVLPDGSVLRARHAGRPTRDCLFEDPVMDGKSLLKIWNLNKLSGVIGVFNCQGAGSWPMK 557
           LVLPDGS+LR R    PTRDCLF+DP+ DGK+LLKIWN+NK +GVIG FNCQGAG W  +
Sbjct: 529 LVLPDGSILRCRLPALPTRDCLFKDPLRDGKTLLKIWNMNKYTGVIGAFNCQGAG-WCPE 587

Query: 558 EDMHR-KPASPLSISGHVCPLDIEFLERVAGEN--WNGDCAVYAFNSGVLTKLPKKG-NL 613
              ++       +++G V   D+E++    G +  W G+ AVY + SG L  +P K  +L
Sbjct: 588 TRKNKGHSECYKTLTGSVRVEDVEWISGAEGTSIDWVGEYAVYLYQSGELLLMPPKSASL 647

Query: 614 EVSLATLKCEIYTICPIRVLGQDLL-FAPIGLLDMYNSGGAVESFEYIMDLSKYIIKIKG 672
            V+L  L+ E++T+ P++ L    + FAPIGL++M+NSGGA++  EY  + S   +KI  
Sbjct: 648 PVTLKPLEFELFTVSPVKKLVSSGVSFAPIGLVNMFNSGGAIQDLEYDDNAS---VKIGV 704

Query: 673 KGCGRFGAYSSSKPKCCMVDTKEEEFTYNAEDGLLTVKL 711
           KGCGRFGAYSS KPK C VD +E EF Y+  DGL+TV++
Sbjct: 705 KGCGRFGAYSSQKPKKCYVDGEEVEFKYD-SDGLVTVQV 742

This family consists of several raffinose synthase proteins, also known as seed inhibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1<-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (EC:2.4.1.82) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway. Raffinose family oligosaccharides (RFOs) are ubiquitous in plant seeds and are thought to play critical roles in the acquisition of tolerance to desiccation and seed longevity. Raffinose synthases are alkaline alpha-galactosidases and are solely responsible for RFO breakdown in germinating maize seeds, whereas acidic galactosidases appear to have other functions. Length = 742

>gnl\|CDD\|165863 PLN02219, PLN02219, probable galactinol--sucrose galactosyltransferase 2	Back alignment and domain information

>gnl\|CDD\|215203 PLN02355, PLN02355, probable galactinol--sucrose galactosyltransferase 1	Back alignment and domain information

>gnl\|CDD\|166325 PLN02684, PLN02684, Probable galactinol--sucrose galactosyltransferase	Back alignment and domain information

>gnl\|CDD\|215381 PLN02711, PLN02711, Probable galactinol--sucrose galactosyltransferase	Back alignment and domain information

>gnl\|CDD\|215532 PLN02982, PLN02982, galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds	Back alignment and domain information

>gnl\|CDD\|215532 PLN02982, PLN02982, galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		724
PLN02219		775	probable galactinol--sucrose galactosyltransferase	100.0
PLN02684		750	Probable galactinol--sucrose galactosyltransferase	100.0
PLN02355		758	probable galactinol--sucrose galactosyltransferase	100.0
PLN02982		865	galactinol-raffinose galactosyltransferase/ghydrol	100.0
PLN02711		777	Probable galactinol--sucrose galactosyltransferase	100.0
PF05691		747	Raffinose_syn: Raffinose synthase or seed imbibiti	100.0
PLN02229		427	alpha-galactosidase	100.0
PLN02692		412	alpha-galactosidase	100.0
PLN02808		386	alpha-galactosidase	100.0
PLN03231		357	putative alpha-galactosidase; Provisional	100.0
PLN02899		633	alpha-galactosidase	100.0
KOG2366		414	consensus Alpha-D-galactosidase (melibiase) [Carbo	99.96
PF02065		394	Melibiase: Melibiase; InterPro: IPR000111 O-Glycos	99.93
COG3345		687	GalA Alpha-galactosidase [Carbohydrate transport a	99.89
cd06592		303	GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact	99.46
cd06593		308	GH31_xylosidase_YicI YicI alpha-xylosidase is a gl	99.19
PRK10658		665	putative alpha-glucosidase; Provisional	98.9
cd06595		292	GH31_xylosidase_XylS-like This family represents a	98.82
PF01055		441	Glyco_hydro_31: Glycosyl hydrolases family 31 ; In	98.72
cd06598		317	GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide	98.72
PRK10426		635	alpha-glucosidase; Provisional	98.71
cd06599		317	GH31_glycosidase_Aec37 Glycosyl hydrolase family 3	98.61
cd06589		265	GH31 The enzymes of glycosyl hydrolase family 31 (	98.61
cd06591		319	GH31_xylosidase_XylS XylS is a glycosyl hydrolase	98.58
cd06597		340	GH31_transferase_CtsY CtsY (cyclic tetrasaccharide	98.58
cd06604		339	GH31_glucosidase_II_MalA Alpha-glucosidase II (alp	98.44
cd06594		317	GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl	98.44
cd06602		339	GH31_MGAM_SI_GAA This family includes the followin	98.34
cd06601		332	GH31_lyase_GLase GLases (alpha-1,4-glucan lyases)	98.3
cd06600		317	GH31_MGAM-like This family includes the following	98.29
PF10566		273	Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro:	98.16
PLN02763		978	hydrolase, hydrolyzing O-glycosyl compounds	98.11
COG1501		772	Alpha-glucosidases, family 31 of glycosyl hydrolas	98.07
cd06603		339	GH31_GANC_GANAB_alpha This family includes the clo	98.06
KOG1065		805	consensus Maltase glucoamylase and related hydrola	96.91
cd06596		261	GH31_CPE1046 CPE1046 is an uncharacterized Clostri	90.54
PF13200		316	DUF4015: Putative glycosyl hydrolase domain	90.0
TIGR01515		613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	80.77

>PLN02219 probable galactinol--sucrose galactosyltransferase 2	Back alignment and domain information

Probab=100.00  E-value=4.8e-209  Score=1748.52  Aligned_cols=719  Identities=53%  Similarity=1.003  Sum_probs=685.3

Q ss_pred             CcccceEEEeeCceEEEcCeecccCCCCceEEccc--------eeeccccCCCCCCceEEeccccCCCceEEEEeeeccC
Q 046494            1 MTVTAKATIIKDGCLMVRGNVVLTGVPQNVVVSPS--------SFIGATSAAPPSSRHVFTLGVLPDGYRFLCLFRFKIW   72 (724)
Q Consensus         1 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~lG~~~~~~r~~al~R~k~~   72 (724)
                      ||||+.|+| +||+|+|+|+++|++||+||++||+        +||||+++ +++|||+++||++ +++|||||||||+|
T Consensus         1 mt~~~~~~~-~~~~l~v~g~~~l~~vp~nv~~t~~~~~~~~~g~F~G~~~~-~~~srhv~~~G~l-~~~rf~~~fRfK~W   77 (775)
T PLN02219          1 MTVTPKISI-NNGNLVVQGKTILTGVPDNIVLTPGSGNGFVAGAFIGATAS-HSKSLHVFPVGVL-EGLRFMCCFRFKLW   77 (775)
T ss_pred             CcccceeEE-cCCeEEECCEEeeccCCCceEecCCCCCCCCcceEEeeecC-Ccccceeeecccc-cCcEEeeeeehhhh
Confidence            999999999 9999999999999999999999998        69999999 9999999999999 99999999999999


Q ss_pred             ccccccCCCCCCCCccceEEEEeecCCCCCcccCCCCCcEEEEEEEeecCceEEEEecCCCCcEEEEEEcCCcccccccc
Q 046494           73 WMIPRVGKSASEVPMETQMLLLEAREDSPLDADAASDNTFYILLLPVLDGQFRATLQGTPTNDLQFCVESGDSSVQTSEA  152 (724)
Q Consensus        73 W~~pr~G~~~~~~~~etq~~l~e~~~~~~l~~~~~~~~~~y~v~Lpls~g~~ra~l~~~~~~~~~i~~~sg~~~~~~~~~  152 (724)
                      ||+||+|++++|||.||||+|+|.++....+ ++..+.+.|+|+|||++|.|||+||++++++|+||+|||++.++++++
T Consensus        78 Wmt~~~G~~g~dip~eTQ~~l~e~~~~~~~~-~~~~~~~~Y~~~lP~~eg~fRa~Lqg~~~~~l~iclesg~~~v~~~~~  156 (775)
T PLN02219         78 WMTQRMGSCGKDIPLETQFMLLESKDEVEGG-NGDDAPTIYTVFLPLLEGQFRAVLQGNDKNEIEICLESGDKAVETNQG  156 (775)
T ss_pred             ccchhhccCCCcCCcceEEEEEEcCCCcccc-ccccCCcceEEEEeecCCceEEEecCCCCCcEEEEEecCCcccccccc
Confidence            9999999999999999999999999632111 111234579999999999999999999999999999999999999999


Q ss_pred             ceEEEEEecCChhHHHHHHHHHHHHhcCcCCCccccccCcccccccccchhhhhhccCHHHHHHHHHHHHHCCCCCcEEE
Q 046494          153 FEAVFINSGDNPFELIKDSIKILEKHKGTFSHLENKKIPRHLDWFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSPRFLV  232 (724)
Q Consensus       153 ~~~v~v~~g~dp~~~i~~A~~~~~~~~~tf~~~~~k~~P~~~~~~GWcTW~af~~~vte~~I~~~l~~l~~~Gi~~~~vi  232 (724)
                      ..++||++|+|||++|++|++++++|++||++|++|++|+++|+|||||||+||++|||++|++++++|+++|+|++|||
T Consensus       157 ~~~v~~~~G~dPy~li~~a~~av~~h~~tf~~re~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip~~~vi  236 (775)
T PLN02219        157 LHLVYMHAGTNPFEVIRQAVKAVEKHMQTFLHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPPKFLI  236 (775)
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHhcccccccccccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCcCcCccCCCCCCCCccccccccccccccccCCCCCCCC-CCCCCCcHHHHHHHHHHHcCCceEEeeeccccccCCC
Q 046494          233 IDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKENCKFNSSG-SDNSCNDLHEFIDEIKEKYGLKYVYMWHALAGYWGGV  311 (724)
Q Consensus       233 IDDGWQ~~~~d~~~~~~~~~~~~~~~~~L~~~~~n~KFP~~~-~~~~~~GLk~lv~~Ik~~~Glk~vgvWhal~GYWgGi  311 (724)
                      ||||||++++++++.++...+|.||++||++|++|.||+... ..++|.|||++|++||+++|||||||||||+||||||
T Consensus       237 IDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~f~en~KF~~~~~~~~fp~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv  316 (775)
T PLN02219        237 IDDGWQQIENKEKDENCVVQEGAQFATRLTGIKENAKFQKNDQKNEQVSGLKHVVDDAKQRHNVKQVYVWHALAGYWGGV  316 (775)
T ss_pred             EccCccccccccccccccccccchhhhhhccccccccccccccccCCCCcHHHHHHHHHhccCCcEEEEeeeccceecCc
Confidence            999999999887766788899999999999999999998432 3468899999999999999999999999999999999


Q ss_pred             CCCchhhhh-------------------hhhccccccCCccccChhHHHHHHHHHHHHHhhcCCCEEEEccccchhhccC
Q 046494          312 LPSSDIMKK-------------------DIAMDSLEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGS  372 (724)
Q Consensus       312 ~P~s~~~~~-------------------d~~~~~~~~~G~g~v~p~da~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~  372 (724)
                      +|+++++++                   |++++.+..+|+++++|+++++||++||+||+++||||||||+|+.+++++.
T Consensus       317 ~P~~~~~~~Y~~~~~~p~~spg~~~~~pd~a~d~l~~~G~glV~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~  396 (775)
T PLN02219        317 KPAAAGMEHYDSALAYPVQSPGVLGNQPDIVMDSLSVHGLGLVNPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGA  396 (775)
T ss_pred             CCCCcccccccccccccccCCCccccCcchhhhhhhhCCccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhc
Confidence            999877753                   5677778889999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHhhCCCCceEeeccCCCcccccccccceEeecCCCCCCCcchhhHHHHHHHHhhhhccCC
Q 046494          373 GYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYSLYSSMKSAVARASEDFMPGEPTFQTLHIASVAFNSLLLGEI  452 (724)
Q Consensus       373 ~~~g~~~l~~ay~~Al~~s~~~~f~~~~iI~cMs~~~~~~~~~~~~~~~R~SdDf~p~~p~~~~~hi~~~a~nsl~~g~~  452 (724)
                      ++++|++++++||+||++|++|||+++++|+||||+++++|+.++++++|+||||||++|++|++||++|||||||||++
T Consensus       397 ~~ggrv~la~~y~~ALe~S~~r~F~~ng~I~CMsh~~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLllg~~  476 (775)
T PLN02219        397 GHGGRVSLTRSYQQALEASIARNFTDNGCISCMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGEF  476 (775)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccCchhhhcccccceeecccccccCCCccCcchhhhhhhhhHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccccccHHHHHHHHHhcCCcEEEecCCCCCcHHhhhhhcCCCCceeeeccCCCCCccccccccCCCCcceEE
Q 046494          453 VVPDWDMFQSKHETAEFHATARALGGCAVYVSDKPGVHDFKILKRLVLPDGSVLRARHAGRPTRDCLFEDPVMDGKSLLK  532 (724)
Q Consensus       453 ~~pDwDMf~s~h~~a~~HaaaraisggPvyisD~pg~hd~~lL~~lv~pdG~ilR~~~pg~pt~d~lf~dp~~d~~~lLk  532 (724)
                      +|||||||||.||+|+|||++||||||||||||+||+||++||||||+|||+||||++||||||||||.||++|++++||
T Consensus       477 v~PDWDMFqS~Hp~A~~HAaaRAiSGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~pg~PTrDclF~Dp~~dg~slLK  556 (775)
T PLN02219        477 MQPDWDMFHSLHPAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQLPGRPTRDCLFADPARDGTSLLK  556 (775)
T ss_pred             cccCchhceecCccHHHHHHHHhhcCCcEEEecCCCCccHHHHHHhhCCCCceeccccCCCcchhhhccccCCCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCcceEEEEeecCCCCCCCcccccccCCC-CCCceeeeecCCchhhhhhhcCCCCCCcEEEEEeccceEEecCCCC
Q 046494          533 IWNLNKLSGVIGVFNCQGAGSWPMKEDMHRKPA-SPLSISGHVCPLDIEFLERVAGENWNGDCAVYAFNSGVLTKLPKKG  611 (724)
Q Consensus       533 i~n~~~~~gvlg~FN~~~~g~w~~~~~~~~~~~-~~~~~~~~v~~~D~~~~~~~a~~~~~~~~~vy~~~~g~~~~l~~~~  611 (724)
                      |||+|+++||||+|||||+| ||++++++++|+ ++.++|+.|++.||+++.++++++|+++|+||+|++|+++++++++
T Consensus       557 Iwn~n~~~gviG~FNcqGag-W~~~~~~~~~~~~~~~~~s~~v~~~Dv~~i~~~a~~~w~~~~~vy~~~sg~l~~l~~~~  635 (775)
T PLN02219        557 IWNVNKCTGVVGVFNCQGAG-WCKIEKKTRIHDTSPGTLTGSVCADDVDQIAQVAGEDWSGDSVVYAYKSGEVVRLPKGA  635 (775)
T ss_pred             EEEcccccceEEEEeccCCC-CCchhhccccccCCCcceEEEEcchhccchhhccccCcCCCEEEEEeccCeEEEcCCCC
Confidence            99999999999999999999 999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             ceEEEecCCceEEEEEeeeeEecCceeEEEeeehhhccCCcceeEEEEEE--eC----------------------ceeE
Q 046494          612 NLEVSLATLKCEIYTICPIRVLGQDLLFAPIGLLDMYNSGGAVESFEYIM--DL----------------------SKYI  667 (724)
Q Consensus       612 ~~~v~L~~~~~ei~t~~Pv~~~~~~~~~A~iGL~~~~~~~~av~~~~~~~--~~----------------------~~~~  667 (724)
                      .++|+|++++|||||++||+.+..+++||||||+||||++|||+++++..  +.                      ....
T Consensus       636 ~~~vtL~~~~~Ei~tv~Pv~~~~~~~~fApiGL~~m~n~ggAi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (775)
T PLN02219        636 SIPVTLKVLEYELFHFCPLKEIATNISFAPIGLLDMFNSGGAVEQFEIHMVSDKAPELFDGEISSELSTSLSENRSPTAT  715 (775)
T ss_pred             ceEEEecCCcEEEEEEeeEEEecCCcEEEecchhhcccCceeeEEeEeecccccccccccccccccccccccccCCCCce
Confidence            99999999999999999999999899999999999999999999999851  10                      1346


Q ss_pred             EEEEeeecceeEEEecCCCceEeecCeeeeeEEeCCCcEEEEEcCC-CCceeeEEeeC
Q 046494          668 IKIKGKGCGRFGAYSSSKPKCCMVDTKEEEFTYNAEDGLLTVKLPG-ECTLRDIEFVY  724 (724)
Q Consensus       668 ~~v~vkg~G~~g~YsS~~P~~~~vdg~~~~f~y~~~~glltv~lp~-~~~~~~~~~~~  724 (724)
                      |+|+|||||+||+|||++|++|.|||++++|+|++++|||+|+||| +++.++|.|||
T Consensus       716 v~~~v~G~G~f~aYsS~~P~~c~vd~~~~~f~y~~~sg~~~~~l~~~~~~~~~~~v~~  773 (775)
T PLN02219        716 IALSVRGCGRFGAYSSQRPLKCAVGSTETDFTYDAEVGLLTLTLPVTEEEMYRWHVEI  773 (775)
T ss_pred             EEEEEEcccceeeEecCCCeEEEECCEEeeeEEcCCCCeEEEEccCCcccCceeeEEE
Confidence            9999999999999999999999999999999999999999999999 88889999986

>PLN02684 Probable galactinol--sucrose galactosyltransferase	Back alignment and domain information

>PLN02355 probable galactinol--sucrose galactosyltransferase 1	Back alignment and domain information

>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds	Back alignment and domain information

>PLN02711 Probable galactinol--sucrose galactosyltransferase	Back alignment and domain information

>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins	Back alignment and domain information

>PLN02229 alpha-galactosidase	Back alignment and domain information

>PLN02692 alpha-galactosidase	Back alignment and domain information

>PLN02808 alpha-galactosidase	Back alignment and domain information

>PLN03231 putative alpha-galactosidase; Provisional	Back alignment and domain information

>PLN02899 alpha-galactosidase	Back alignment and domain information

>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase	Back alignment and domain information

>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose	Back alignment and domain information

>PRK10658 putative alpha-glucosidase; Provisional	Back alignment and domain information

>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus	Back alignment and domain information

>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3	Back alignment and domain information

>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY	Back alignment and domain information

>PRK10426 alpha-glucosidase; Provisional	Back alignment and domain information

>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37	Back alignment and domain information

>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase	Back alignment and domain information

>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate	Back alignment and domain information

>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ	Back alignment and domain information

>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities	Back alignment and domain information

>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride	Back alignment and domain information

>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase	Back alignment and domain information

>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end	Back alignment and domain information

>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II	Back alignment and domain information

>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3	Back alignment and domain information

>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds	Back alignment and domain information

>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB)	Back alignment and domain information

>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain	Back alignment and domain information

>PF13200 DUF4015: Putative glycosyl hydrolase domain	Back alignment and domain information

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		724
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1zy9_A		564	Alpha-galactosidase; TM1192, struc genomics, joint	2e-06
3cc1_A		433	BH1870 protein, putative alpha-N-acetylgalactosami	3e-05
1szn_A		417	Alpha-galactosidase; (beta/alpha)8 barrel,TWO doma	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 70.7 bits (172), Expect = 1e-12
 Identities = 66/459 (14%), Positives = 114/459 (24%), Gaps = 156/459 (33%)

Query: 51  VFTLGVLPDGYRFLCLFRFKIWWMIPRVGK--SASEVPMETQMLL------LEAREDS-- 100
              L V    Y+  C   FKI+W+   +    S   V    Q LL        +R D   
Sbjct: 165 WVALDVCLS-YKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 101 --PLDADAASDNTFYIL--------LLPVLDG--------QFRATLQGTPTNDLQFC--- 139
              L   +       +L        LL VL           F          +L  C   
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAF----------NLS-CKIL 269

Query: 140 VESGDSSV------QTSEAFEAVFINSGDNPFELIKDSIKILEKHKGTFSHLENKKIPRH 193
           + +    V       T+        +    P E+    +K L+              PR 
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 194 LDWFG------WCTWDAFYKQVNPQGIKEGLHSFLE----GGCSPRF--LVI--DDG--- 236
           L            TWD  +K VN   +   + S L           F  L +        
Sbjct: 330 LSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 237 -------WQETI--------NEFCKDGEPLIE--GTQFAIRLVDI--KENCKFNSSGSDN 277
                  W + I        N+  K    L+E    +  I +  I  +   K  +  +  
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIYLELKVKLENEYA-- 444

Query: 278 SCNDLHEFIDEIKEKYGLKYVYMWHALA-----GYW------------------------ 308
               LH     I + Y +   +    L       Y+                        
Sbjct: 445 ----LH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 309 ------------GGVLPSSDIMKKDIAMDSLEKYGVGIIDPQKIFDFY-NDLHSYLANSG 355
                            ++     +     L+ Y   I D    ++   N +  +L    
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 356 VDGVKVD----VQSLMETLGSGYGGRVLLTRQYQQALEQ 390
            + +       ++  +                +++A +Q
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAI---------FEEAHKQ 586

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 Length = 564	Back alignment and structure

>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125} Length = 433	Back alignment and structure

>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A* Length = 417	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		724
3cc1_A		433	BH1870 protein, putative alpha-N-acetylgalactosami	100.0
3hg3_A		404	Alpha-galactosidase A; glycoprotein, carbohydrate-	100.0
1uas_A		362	Alpha-galactosidase; TIM-barrel, beta-alpha-barrel	100.0
1szn_A		417	Alpha-galactosidase; (beta/alpha)8 barrel,TWO doma	100.0
1zy9_A		564	Alpha-galactosidase; TM1192, struc genomics, joint	100.0
3lrk_A		479	Alpha-galactosidase 1; tetramer, GH27, glycoprotei	100.0
3a5v_A		397	Alpha-galactosidase; beta/alpha barrel, N-glycosyl	100.0
4do4_A		400	Alpha-N-acetylgalactosaminidase; pharmacological c	100.0
3a21_A		614	Putative secreted alpha-galactosidase; beta-alpha-	100.0
4fnq_A		729	Alpha-galactosidase AGAB; glycoside hydrolase, hyd	99.97
2xn2_A		732	Alpha-galactosidase; hydrolase, glycosidase; HET:	99.94
2yfo_A		720	Alpha-galactosidase-sucrose kinase agask; hydrolas	99.93
3mi6_A		745	Alpha-galactosidase; NESG, structural genomics, PS	99.92
2f2h_A		773	Putative family 31 glucosidase YICI; BETA8alpha8 b	99.35
2g3m_A		693	Maltase, alpha-glucosidase; hydrolase, glycoside h	99.11
4ba0_A		817	Alpha-glucosidase, putative, ADG31B; hydrolase; HE	99.03
2xvl_A		1020	Alpha-xylosidase, putative, XYL31A; hydrolase, gly	98.93
3lpp_A		898	Sucrase-isomaltase; glycoside hydrolase family 31,	98.86
3nsx_A		666	Alpha-glucosidase; structural genomics, PSI-2, pro	98.85
3l4y_A		875	Maltase-glucoamylase, intestinal; glycoside hydrol	98.82
3a24_A		641	Alpha-galactosidase; glycoside hydrolase family 97	98.77
3top_A		908	Maltase-glucoamylase, intestinal; membrane, hydrol	98.11
2d73_A		738	Alpha-glucosidase SUSB; glycoside hydrolase family	97.63
2x2h_A		1027	Alpha-1,4-glucan lyase isozyme 1; anhydrofructose	97.27

>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}	Back alignment and structure

Probab=100.00  E-value=2.2e-44  Score=401.39  Aligned_cols=372  Identities=15%  Similarity=0.166  Sum_probs=252.0

Q ss_pred             cccccchhhhhhccCHHHHHHHHHHH----HHCCCCCcEEEEecCcCcCccCCCCCCCCccccccccccccccccC-CCC
Q 046494          196 WFGWCTWDAFYKQVNPQGIKEGLHSF----LEGGCSPRFLVIDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKEN-CKF  270 (724)
Q Consensus       196 ~~GWcTW~af~~~vte~~I~~~l~~l----~~~Gi~~~~viIDDGWQ~~~~d~~~~~~~~~~~~~~~~~L~~~~~n-~KF  270 (724)
                      +|||||||+||+++||++|++.++.|    ++.|+  +||+||||||..+++..+-.   .....-...+++|.++ +||
T Consensus        13 p~gwnsW~~~~~~i~e~~i~~~ad~~~~gl~~~G~--~~~~iDDgW~~~~~~~~~y~---~~~~~~~d~~G~~~~~~~kF   87 (433)
T 3cc1_A           13 PMGWNSWDCYGASVTEEEVLGNAEYMANHLKKYGW--EYIVVDIQWYEPTANSSAYN---PFAPLCMDEYGRLLPATNRF   87 (433)
T ss_dssp             CEEEESHHHHTTCCCHHHHHHHHHHHHHHTGGGTC--CEEEECSCTTCCCTTSTTCC---TTSCSCBCTTSCBCCCTTTC
T ss_pred             CEEEEChhhhCCcCCHHHHHHHHHHHHhcchhhCC--eEEEECCCcCCCCCcccccc---cccccccCCCCCEeECCccC
Confidence            59999999999999999999999999    55554  59999999998754321000   0000001235678866 899


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHcCCceEEeeeccccccCCCCCCchhhhhhhhccc-----cc---cCCccccC--hhHH
Q 046494          271 NSSGSDNSCNDLHEFIDEIKEKYGLKYVYMWHALAGYWGGVLPSSDIMKKDIAMDS-----LE---KYGVGIID--PQKI  340 (724)
Q Consensus       271 P~~~~~~~~~GLk~lv~~Ik~~~Glk~vgvWhal~GYWgGi~P~s~~~~~d~~~~~-----~~---~~G~g~v~--p~da  340 (724)
                      |+.   ..+.|||+++++||+ .||| +|||+.+.-.+..+.|+++.+.+++....     ..   ..+...+|  .+++
T Consensus        88 P~~---~~~~Gl~~l~~~ih~-~Glk-~Giw~~p~i~~~~v~~~s~~~~~~~~~~di~~~~~~~~~~~~~~~lD~~~p~~  162 (433)
T 3cc1_A           88 PSA---KNGAGFKPLSDAIHD-LGLK-FGIHIMRGIPRQAVYENSPVLGSTKTAREIAHTNSICPWNTDMYGVDPTKEGA  162 (433)
T ss_dssp             GGG---TTTTTTHHHHHHHHH-TTCE-EEEEEESSEEHHHHHHTCBCTTSSCBHHHHEETTCCBTTBTTEEEECTTSTTH
T ss_pred             CCc---ccCCCHHHHHHHHHH-cCCe-eEEEeCCCCchhccCCCCccccccceecccccCCcccCCCCCceeecCCCHHH
Confidence            921   112399999999999 6999 99999763222234555544333333211     11   11111232  2459


Q ss_pred             HHHHHHHHHHHhhcCCCEEEEccccchhhccCCCCChhhHHHHHHHHHHHHHHhhCCCCceEeeccCCCcc----ccccc
Q 046494          341 FDFYNDLHSYLANSGVDGVKVDVQSLMETLGSGYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYS----LYSSM  416 (724)
Q Consensus       341 ~~fy~~~~~~Las~GVD~VKvD~q~~l~~l~~~~~g~~~l~~ay~~Al~~s~~~~f~~~~iI~cMs~~~~~----~~~~~  416 (724)
                      ++||+.++++|++|||||||+|+|+.. .+. .+  ..+..++|++||++      .+++|++|+|+++..    .+..+
T Consensus       163 ~~~~~~~~~~l~~~GvDyvK~D~~~~~-~~~-~~--~~~~~~~~~~aL~~------~gr~i~~slc~g~~~~~~~~~~~~  232 (433)
T 3cc1_A          163 QSYYNSLFELYAQWGVDFVKVDDIAAS-RLY-DT--HLEEIKMIQRAIQA------CGRPMVLSLSPGPAPIKYAHHFKT  232 (433)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEESCSCT-TSS-CC--CHHHHHHHHHHHHH------SSSCCEEECCCSBSSEESCSSSCC
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCCcccc-cCC-cc--cHHHHHHHHHHHHh------cCCCEEEEecCCCCChhhhhhhhh
Confidence            999999999999999999999999852 221 11  34566778888775      378999999986322    24567


Q ss_pred             ccceEeecCCCCCCCcchhhHHHHHHHHhhhhccCCCCCCcccccccc-------------------ccHHHHHHHHHhc
Q 046494          417 KSAVARASEDFMPGEPTFQTLHIASVAFNSLLLGEIVVPDWDMFQSKH-------------------ETAEFHATARALG  477 (724)
Q Consensus       417 ~~~~~R~SdDf~p~~p~~~~~hi~~~a~nsl~~g~~~~pDwDMf~s~h-------------------~~a~~Haaarais  477 (724)
                      .+++||+|+|++|+|++...+ +..+++.+.++++++|||||||+++|                   .+.++|+++|||+
T Consensus       233 ~~n~wR~s~D~~~~w~~~~~~-~~~~~~~~~~~~~g~~nD~Dml~vg~~g~~~~~~~~~~~~~~lt~~E~rt~~alwai~  311 (433)
T 3cc1_A          233 NANMWRITDDFWDDWSLLYQM-FERCEVWEKHIGTGHWPDCGMLPLGHIGIRSVDGPGGDRWTRFTKDEQLTMMNLWAIC  311 (433)
T ss_dssp             TTGGGCCEECCCSCHHHHHHH-HHHHHHHHHSCCCSCCCBCCCBCCSEECTTCSSSSSSSEECSSCHHHHHHHHHHHHHT
T ss_pred             hCcEEEeccCccccHHHHHHH-HHHHHHHHhhcCCCccCChHHhcccCccccccccccccccCCCCHHHHHHHHHHHHHh
Confidence            899999999999999875432 22345667778889999999999985                   4678899999999


Q ss_pred             CCcEEEecCCCCCc---HHhhh--hhc--CCCCceeeeccCCCCCccccccccCCCCcceEEEEee--cCcceEEEEeec
Q 046494          478 GCAVYVSDKPGVHD---FKILK--RLV--LPDGSVLRARHAGRPTRDCLFEDPVMDGKSLLKIWNL--NKLSGVIGVFNC  548 (724)
Q Consensus       478 ggPvyisD~pg~hd---~~lL~--~lv--~pdG~ilR~~~pg~pt~d~lf~dp~~d~~~lLki~n~--~~~~gvlg~FN~  548 (724)
                      ++||++||.+.+-+   ++||+  .++  -+||..-|+-          +.    ++  -+.||..  ..+.-+|++||.
T Consensus       312 ~spL~ig~dl~~~~~~~~~lL~N~eviavnqdg~~~~~v----------~~----~~--~~~vw~~~l~~g~~~val~N~  375 (433)
T 3cc1_A          312 HSPLMFGGELRDNDEWTLSLLTNEGILSINQKSVLNRFV----------YR----EE--DKVAWAANGRNGEAYVALFNL  375 (433)
T ss_dssp             TCCEEECSCGGGCCHHHHHHHCCHHHHHHHHHCEEEEEE----------EE----ET--TEEEEEEECSSSCEEEEEEEC
T ss_pred             cCceEecCccccCCHHHHHHhcChhheeecCCCcCceee----------Ee----cC--CcEEEEEECCCCCEEEEEEeC
Confidence            99999999877654   56665  332  2666543321          11    12  2556654  345678999997


Q ss_pred             CCCCCCCcccccccCCCCCCceeeeecCCchhhhhhhcCCCCCCcEEEEEeccce-EEecCCCCceEEEecCCceEEEEE
Q 046494          549 QGAGSWPMKEDMHRKPASPLSISGHVCPLDIEFLERVAGENWNGDCAVYAFNSGV-LTKLPKKGNLEVSLATLKCEIYTI  627 (724)
Q Consensus       549 ~~~g~w~~~~~~~~~~~~~~~~~~~v~~~D~~~~~~~a~~~~~~~~~vy~~~~g~-~~~l~~~~~~~v~L~~~~~ei~t~  627 (724)
                      +...                 .+-++..+|+.         ..+.|-|+.--+++ +.....+..++++|++.++.+|.+
T Consensus       376 ~~~~-----------------~~~~~~~~~lg---------l~~~~~v~Dlw~~~~~g~~~~~~~~~~~v~~hg~~l~~l  429 (433)
T 3cc1_A          376 HDQQ-----------------KTLQFRLDMVG---------IMETVQLFNVWDRSFLQSLAPSESFQIELKPHQSMMLKL  429 (433)
T ss_dssp             SSSC-----------------EEEEECGGGTT---------CCSCEEEEETTTTEEEEEECTTCCEEEEECTTCEEEEEE
T ss_pred             CCCC-----------------EEEEEEHHHcC---------CCCceEEEECCCCCccccccCCceEEEEECCCcEEEEEE
Confidence            5421                 12223344442         13367788877776 333333348999999999999999


Q ss_pred             eee
Q 046494          628 CPI  630 (724)
Q Consensus       628 ~Pv  630 (724)
                      .|.
T Consensus       430 ~~~  432 (433)
T 3cc1_A          430 SPD  432 (433)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            885

PyMOL of 3cc1

>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*	Back alignment and structure

>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1	Back alignment and structure

>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*	Back alignment and structure

>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13	Back alignment and structure

>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*	Back alignment and structure

>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}	Back alignment and structure

>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*	Back alignment and structure

>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*	Back alignment and structure

>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*	Back alignment and structure

>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*	Back alignment and structure

>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*	Back alignment and structure

>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}	Back alignment and structure

>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A*	Back alignment and structure

>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*	Back alignment and structure

>4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A*	Back alignment and structure

>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase family 31, (beta/alpha)8 barre; HET: PXN; 2.30A {Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*	Back alignment and structure

>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A*	Back alignment and structure

>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A*	Back alignment and structure

>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*	Back alignment and structure

>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB: 3ton_A*	Back alignment and structure

>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*	Back alignment and structure

>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway, glycoside hydrolase family 3 starch binding domain; 2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A* 2x2j_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		724
d1szna2		314	c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [T	1e-13
d1zy9a2		348	c.1.8.13 (A:178-525) Alpha-galactosidase GalA cata	7e-09
d1uasa2		273	c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [	3e-06
d1r46a2		292	c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens)	1e-05
d1ktba2		293	c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallu	2e-04

>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId: 51453]} Length = 314	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Melibiase
species: Trichoderma reesei [TaxId: 51453]

 Score = 70.3 bits (171), Expect = 1e-13
 Identities = 34/305 (11%), Positives = 76/305 (24%), Gaps = 41/305 (13%)

Query: 197 FGWCTWDAFYKQVNPQGIKEGLHSFLEGGCSP---RFLVIDDGWQETINEFCKDGEPLIE 253
            GW +W+A++  ++           +  G       ++ IDD W            P   
Sbjct: 14  LGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAP--- 70

Query: 254 GTQFAIRLVDIKENCKFNSSGSDNSCNDLHEFIDEIKEKYGLKYVYMWHALAGYWGGVLP 313
                                +    + +     ++        + ++           P
Sbjct: 71  --------------------NATRFPDGIDGLAKKVHALG--LKLGIYSTAGTATCAGYP 108

Query: 314 SSDIMKKDIAMDSLEKYGVGIIDPQKIFDFYNDLHSYLANSGVDGVKVDVQSLMETLGS- 372
           +S   +   A      +GV  +      +  +D          D VK        T    
Sbjct: 109 ASLGYEDVDAA-DFADWGVDYLKY-DNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDP 166

Query: 373 -----GYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYSLYSSMKSAVARASEDF 427
                GY      + +   A+  ++A    +  L  C+   +        + ++    D 
Sbjct: 167 TLAPPGYDWSTSKSAERFGAMRNALAKQSHEIVLSMCIWGQADVFSWGNSTGISWRMSDD 226

Query: 428 MPGEPTFQTLHIASVAFNSLLLGEIVVPDWDMFQSKH-----ETAEFHATARALGGCAVY 482
           +       T  +   +F    +      D DM +  +          H    A     + 
Sbjct: 227 ISPNWGSVTRILNLNSFKLNSVDFWGHNDADMLEVGNGNLTAAETRTHFALWAAMKSPLL 286

Query: 483 VSDKP 487
           +    
Sbjct: 287 IGTDL 291

PyMOL of d1szna2

>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 348	Back information, alignment and structure

>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]} Length = 273	Back information, alignment and structure

>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]} Length = 292	Back information, alignment and structure

>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 293	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		724
d1szna2		314	Melibiase {Trichoderma reesei [TaxId: 51453]}	100.0
d1uasa2		273	Melibiase {Rice (Oryza sativa) [TaxId: 4530]}	100.0
d1r46a2		292	Melibiase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1zy9a2		348	Alpha-galactosidase GalA catalytic domain {Thermot	100.0
d1ktba2		293	Melibiase {Chicken (Gallus gallus) [TaxId: 9031]}	100.0
d2f2ha4		338	Putative glucosidase YicI, domain 2 {Escherichia c	99.17
d2ebna_		285	Endo-beta-N-acetylglucosaminidase {Flavobacterium	83.6

>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId: 51453]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Melibiase
species: Trichoderma reesei [TaxId: 51453]

Probab=100.00  E-value=9.6e-39  Score=335.96  Aligned_cols=271  Identities=15%  Similarity=0.197  Sum_probs=202.7

Q ss_pred             cccccchhhhhhccCHHHHHHHHHHHHHCCCC---CcEEEEecCcCcCccCCCCCCCCccccccccccccccccC-CCCC
Q 046494          196 WFGWCTWDAFYKQVNPQGIKEGLHSFLEGGCS---PRFLVIDDGWQETINEFCKDGEPLIEGTQFAIRLVDIKEN-CKFN  271 (724)
Q Consensus       196 ~~GWcTW~af~~~vte~~I~~~l~~l~~~Gi~---~~~viIDDGWQ~~~~d~~~~~~~~~~~~~~~~~L~~~~~n-~KFP  271 (724)
                      +||||||++|+++|||+.|++.++.|++.|++   +++|+||||||..+++.                +++|.++ +|||
T Consensus        13 p~GwnSW~~~~~~i~e~~i~~~a~~l~e~gl~~~G~~~~~iDdGW~~~~~~~----------------~G~~~~d~~kFP   76 (314)
T d1szna2          13 SLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRV----------------DGHIAPNATRFP   76 (314)
T ss_dssp             CEEEESHHHHTTCCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCB----------------TTBCCBCTTTCT
T ss_pred             CCcccchhhhcccCCHHHHHHHHHHHHHcCccccCcEEEEECCCccCCCCCC----------------CCCeeeCHhhcC
Confidence            48999999999999999999999999988763   67999999999876542                3457765 8999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHcCCceEEeeeccccccCCCCCCchhhhhhhhccccccCCccccChhHHHHHHHHHHHHH
Q 046494          272 SSGSDNSCNDLHEFIDEIKEKYGLKYVYMWHALAGYWGGVLPSSDIMKKDIAMDSLEKYGVGIIDPQKIFDFYNDLHSYL  351 (724)
Q Consensus       272 ~~~~~~~~~GLk~lv~~Ik~~~Glk~vgvWhal~GYWgGi~P~s~~~~~d~~~~~~~~~G~g~v~p~da~~fy~~~~~~L  351 (724)
                              +|||+++++||+ .|+| +|+|+++..+|+..+|++...+. .....+...|+.+..| +++.+++.+++.+
T Consensus        77 --------~Gl~~~~~~i~~-~G~k-~Giw~~p~~~~~~~~p~~~~~~~-~~~~~~~~~~~d~~~~-d~~~~~~~~~~~~  144 (314)
T d1szna2          77 --------DGIDGLAKKVHA-LGLK-LGIYSTAGTATCAGYPASLGYED-VDAADFADWGVDYLKY-DNCNVPSDWQDEY  144 (314)
T ss_dssp             --------THHHHHHHHHHH-TTCE-EEEEEESSSBCTTSCBCCTTCHH-HHHHHHHHTTCCEEEE-ECCCCCGGGSCSS
T ss_pred             --------CchHHHHHHHHh-cCCe-EEEeecccccccCCCcccccccc-cchhhhhhcCCccccc-hHHHHHHHHHHHH
Confidence                    899999999999 7999 89999999888888887643222 0001111223333332 4556777777888


Q ss_pred             hhcCCCEEEEccccchhhccC------CCCChhhHHHHHHHHHHHHHHhhCCCCceEeeccCCCcc-cccccccceEeec
Q 046494          352 ANSGVDGVKVDVQSLMETLGS------GYGGRVLLTRQYQQALEQSVAWNFKDNNLICCMSHNSYS-LYSSMKSAVARAS  424 (724)
Q Consensus       352 as~GVD~VKvD~q~~l~~l~~------~~~g~~~l~~ay~~Al~~s~~~~f~~~~iI~cMs~~~~~-~~~~~~~~~~R~S  424 (724)
                      +++||||+|+|.+........      ............+.++.+++++.+++.-+..|+++.... .+....++++|+|
T Consensus       145 ~~~g~d~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~c~~~~~~~~~~~~~~~~~~R~s  224 (314)
T d1szna2         145 VACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTSKSAERFGAMRNALAKQSHEIVLSMCIWGQADVFSWGNSTGISWRMS  224 (314)
T ss_dssp             BCCCTTTSCCBGGGBCCTTTCTTBCCTTCCGGGSHHHHHHHHHHHHHHTSSSCCEEEECCTTGGGHHHHGGGTCSEEECS
T ss_pred             HHhCCceEEecccccchhccCcccCccccCcchhhHHHHHHHHHHHHHHhCCCeEEEecCCCCCCchhhhhhcccceeec
Confidence            999999999999875432211      111112223334456666778877766677888876543 2455788999999


Q ss_pred             CCCCCCCcchhhHHHHHHHHhhhhccCCCCCCcccccccc-----ccHHHHHHHHHhcCCcEEEecCCCC---CcHHhh
Q 046494          425 EDFMPGEPTFQTLHIASVAFNSLLLGEIVVPDWDMFQSKH-----ETAEFHATARALGGCAVYVSDKPGV---HDFKIL  495 (724)
Q Consensus       425 dDf~p~~p~~~~~hi~~~a~nsl~~g~~~~pDwDMf~s~h-----~~a~~HaaaraisggPvyisD~pg~---hd~~lL  495 (724)
                      +|++|.|...+. ++..++++..+.+...|||+||++.++     .+.++|+++||++|+|++|||.+.+   +..+||
T Consensus       225 ~D~~~~w~~~~~-~~~~~~~~~~~~~~~~~~DpDml~~g~~~lt~~e~r~~~sl~a~~~~pl~~g~dl~~~~~~~~~ll  302 (314)
T d1szna2         225 DDISPNWGSVTR-ILNLNSFKLNSVDFWGHNDADMLEVGNGNLTAAETRTHFALWAAMKSPLLIGTDLAQLSQNNINLL  302 (314)
T ss_dssp             SCCCSSHHHHHH-HHHHHHTCGGGCBTTBEEECCSCCTTCTTCCHHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHH
T ss_pred             CCcccccchHHH-HHHHHHHHHHHhcCCccCCchhcccCCCCCCHHHHHHHHHHHHHHhCchhccCCcccCCHHHHHHh
Confidence            999999887654 567788898888889999999999765     3668999999999999999987654   445666

PyMOL of d1szna2

>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase {Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]}	Back information, alignment and structure