Citrus Sinensis ID: 046507

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
MNLVSKMGKVLIIKVEELREYFENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRIEHVQDKYKFILDN
ccHHHHHHHHccccHHHHHHHHHcccEEEEEEccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccc
cHHHHHHHHHccccHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHHHHcccccHHEEEEccccccccEEEcc
MNLVSKMGKVLIIKVEELREYFENGFQsigmnyyppcpqpekivgltphsddSALTILLEINEveglqikkdgkwipvtpfpnaFVVNIGVVLEIVtngtyrsiEHRVIVNSVQGRLSIGTIYLVIydgemypasnlvaennpplfkrvpvEEYFRNLCARklrgkspldalRIEHVQDKYKFILDN
MNLVSKMGKVLIIKVEELREYFENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHrvivnsvqgrlSIGTIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARklrgkspldalriehvqdkykfildn
MNLVSKMGKVLIIKVEELREYFENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRIEHVQDKYKFILDN
******MGKVLIIKVEELREYFENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRIEHVQDKYKFIL**
MNLVSKMGKVLIIKVEELREYFENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRIEHVQDK**FI***
MNLVSKMGKVLIIKVEELREYFENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRIEHVQDKYKFILDN
MNLVSKMGKVLIIKVEELREYFENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRIEHVQDKYK*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNLVSKMGKVLIIKVEELREYFENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRIEHVQDKYKFILDN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query187 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.919 0.480 0.580 5e-53
D4N502360 Codeine O-demethylase OS= N/A no 0.871 0.452 0.515 4e-46
D4N501364 Probable 2-oxoglutarate/F N/A no 0.930 0.478 0.522 5e-46
D4N500364 Thebaine 6-O-demethylase N/A no 0.930 0.478 0.511 3e-43
A2A1A0352 S-norcoclaurine synthase N/A no 0.695 0.369 0.465 2e-27
Q9MB94319 1-aminocyclopropane-1-car N/A no 0.721 0.423 0.420 9e-26
Q9LTH8364 1-aminocyclopropane-1-car no no 0.759 0.390 0.397 9e-26
Q9LTH7366 1-aminocyclopropane-1-car no no 0.759 0.387 0.404 2e-25
Q08506319 1-aminocyclopropane-1-car N/A no 0.791 0.463 0.379 3e-25
Q40062339 2'-deoxymugineic-acid 2'- N/A no 0.727 0.401 0.390 3e-25
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  206 bits (525), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/174 (58%), Positives = 130/174 (74%), Gaps = 2/174 (1%)

Query: 3   LVSKMGKVLIIKVEELREYFEN--GFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLE 60
           L++KM + L IK EEL + F++    QS+ MNYYPPCPQP++++GLTPHSD   LT+L++
Sbjct: 185 LIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQ 244

Query: 61  INEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIG 120
           +N+VEGLQIKKDGKW+PV P PNAF+VNIG VLEI+TNGTYRSIEHR +VNS + RLSI 
Sbjct: 245 VNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIA 304

Query: 121 TIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRI 174
           T + V    E+ PA +LV       FKR+ ++EY   L +R L GK+ LDALRI
Sbjct: 305 TFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9MB94|ACCO_PRUMU 1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q08506|ACCO1_PETHY 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1 Back     alignment and function description
>sp|Q40062|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
224061385 355 predicted protein [Populus trichocarpa] 0.930 0.490 0.614 3e-58
255575141 364 Leucoanthocyanidin dioxygenase, putative 0.930 0.478 0.605 9e-58
224061381 359 predicted protein [Populus trichocarpa] 0.941 0.490 0.596 1e-57
363807040 358 uncharacterized protein LOC100777264 [Gl 0.930 0.486 0.580 1e-56
255557477 363 Flavonol synthase/flavanone 3-hydroxylas 0.957 0.493 0.558 4e-56
358348748 359 Protein SRG1 [Medicago truncatula] gi|35 0.941 0.490 0.590 1e-55
255575133 317 Naringenin,2-oxoglutarate 3-dioxygenase, 0.919 0.542 0.587 2e-55
356556862 353 PREDICTED: protein SRG1-like [Glycine ma 0.941 0.498 0.607 2e-55
255634602237 unknown [Glycine max] 0.941 0.742 0.596 1e-54
225462503 369 PREDICTED: protein SRG1-like [Vitis vini 0.935 0.474 0.531 2e-54
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 131/174 (75%)

Query: 1   MNLVSKMGKVLIIKVEELREYFENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLE 60
           + ++ KM K L I+ EE+ E F NGFQS+ MNYYPPCPQP+K++GLTPHSD   LTILL+
Sbjct: 182 ITILGKMAKALKIEAEEVEELFGNGFQSMRMNYYPPCPQPDKVIGLTPHSDAVGLTILLQ 241

Query: 61  INEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIG 120
           +NEVEGLQ+KKDGKW+PV P PNAF+ N+G +LEI+TNGTYRSIEHR  VNS + RLSI 
Sbjct: 242 VNEVEGLQVKKDGKWVPVKPLPNAFIFNVGDILEIITNGTYRSIEHRATVNSEKERLSIA 301

Query: 121 TIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRI 174
           T     YDG + PAS+LV E  P +FK    EEYF+ L AR+L  KS LD +RI
Sbjct: 302 TFLSPNYDGVIGPASSLVTEQTPAMFKSTTTEEYFKGLFARELHEKSYLDVMRI 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807040|ref|NP_001242069.1| uncharacterized protein LOC100777264 [Glycine max] gi|255645137|gb|ACU23067.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255557477|ref|XP_002519769.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223541186|gb|EEF42742.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|358348748|ref|XP_003638405.1| Protein SRG1 [Medicago truncatula] gi|355504340|gb|AES85543.1| Protein SRG1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255575133|ref|XP_002528471.1| Naringenin,2-oxoglutarate 3-dioxygenase, putative [Ricinus communis] gi|223532080|gb|EEF33888.1| Naringenin,2-oxoglutarate 3-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356556862|ref|XP_003546739.1| PREDICTED: protein SRG1-like [Glycine max] Back     alignment and taxonomy information
>gi|255634602|gb|ACU17663.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225462503|ref|XP_002268794.1| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.919 0.480 0.580 2.5e-49
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.919 0.487 0.549 4.2e-47
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.925 0.479 0.545 2.7e-45
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.919 0.483 0.529 2.4e-44
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.919 0.483 0.520 5e-44
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.866 0.445 0.445 3.6e-34
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.850 0.428 0.422 6.9e-31
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.919 0.492 0.367 5.6e-29
TAIR|locus:2040575366 AT2G36690 [Arabidopsis thalian 0.860 0.439 0.388 7.1e-29
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.786 0.422 0.401 3.9e-28
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 101/174 (58%), Positives = 130/174 (74%)

Query:     3 LVSKMGKVLIIKVEELREYFEN--GFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLE 60
             L++KM + L IK EEL + F++    QS+ MNYYPPCPQP++++GLTPHSD   LT+L++
Sbjct:   185 LIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQ 244

Query:    61 INEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIG 120
             +N+VEGLQIKKDGKW+PV P PNAF+VNIG VLEI+TNGTYRSIEHR +VNS + RLSI 
Sbjct:   245 VNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIA 304

Query:   121 TIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRI 174
             T + V    E+ PA +LV       FKR+ ++EY   L +R L GK+ LDALRI
Sbjct:   305 TFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040575 AT2G36690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-74
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 3e-52
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 5e-45
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-41
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-41
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-38
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 4e-38
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 9e-38
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 7e-36
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-34
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-32
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 3e-32
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 6e-31
PLN02904357 PLN02904, PLN02904, oxidoreductase 7e-30
PLN02704335 PLN02704, PLN02704, flavonol synthase 7e-29
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 4e-28
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 7e-25
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 7e-23
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-22
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-17
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-16
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 5e-16
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 9e-16
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-15
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-14
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 5e-08
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  227 bits (580), Expect = 2e-74
 Identities = 99/173 (57%), Positives = 126/173 (72%), Gaps = 1/173 (0%)

Query: 3   LVSKMGKVLIIKVEELREYFENGF-QSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEI 61
           L +KM   L IK EE+ + F++   QSI MNYYPPCPQP++++GLTPHSD   LTILL++
Sbjct: 185 LFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQV 244

Query: 62  NEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGT 121
           NEVEGLQIKKDGKW+ V P PNA VVN+G +LEI+TNGTYRSIEHR +VNS + RLS+ T
Sbjct: 245 NEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVAT 304

Query: 122 IYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRI 174
            +      E+ PA +LV      LFK +  +EYF  L +R+L GK+ LDA+RI
Sbjct: 305 FHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 187
PLN02216357 protein SRG1 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02947374 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.54
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.27
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.85
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 90.25
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 88.94
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 85.5
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=2.5e-52  Score=362.46  Aligned_cols=173  Identities=57%  Similarity=0.914  Sum_probs=164.0

Q ss_pred             HHHHHHHHhCCCChhhHHhhhcC-CcceEEEeecCCCCCCCccccccCcCCCCCceEEEecCCcceeEEeeCCeeeeecc
Q 046507            2 NLVSKMGKVLIIKVEELREYFEN-GFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPVTP   80 (187)
Q Consensus         2 ~ll~~ia~~Lgl~~~~f~~~~~~-~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~qd~~~~GLqV~~~g~W~~V~~   80 (187)
                      +||++||++||+++++|.+++.. ..+.||++|||||++++..+|+++|||+|+||+|+||++++||||+++|+|++|+|
T Consensus       184 ~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p  263 (357)
T PLN02216        184 ILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKP  263 (357)
T ss_pred             HHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCEEEECCC
Confidence            68999999999999999999876 45789999999999988899999999999999999965799999999999999999


Q ss_pred             CCCeEEEechhhhhhhcCCceecccCCCcCCCCCCccceeeeeeeCCCeEEecCcccccCCCCCCCCCccHHHHHHHHHH
Q 046507           81 FPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPASNLVAENNPPLFKRVPVEEYFRNLCA  160 (187)
Q Consensus        81 ~~~~~vVn~Gd~l~~lSnG~~~s~~HRV~~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~~~~~y~~~~~~ey~~~~~~  160 (187)
                      +||++|||+||+||+||||+|||+.|||+.++.++|+|++||+.|+.|++|+|+++++++++|++|++++++||+..+++
T Consensus       264 ~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~  343 (357)
T PLN02216        264 LPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFS  343 (357)
T ss_pred             CCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHh
Confidence            99999999999999999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCccccccc
Q 046507          161 RKLRGKSPLDALRI  174 (187)
Q Consensus       161 ~~~~g~~~~~~~~~  174 (187)
                      +...+++.++.++|
T Consensus       344 ~~~~~~~~~~~~~~  357 (357)
T PLN02216        344 RELDGKAYLDAMRI  357 (357)
T ss_pred             cccCCcchhhhhcC
Confidence            99889988888775

>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-25
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-18
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-18
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-18
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 4e-10
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 8e-06
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 10/158 (6%)
Query: 21  YFENGF-QSIGMNY------YPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDG 73
           Y +N F  S G N+      YPPCP+P+ I GL  H+D   + +L + ++V GLQ+ KDG
Sbjct: 142 YLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG 201
Query: 74  KWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYP 133
           +WI V P  ++ VVN+G  LE++TNG Y+S+ HRVI      R S+ + Y    D  +YP
Sbjct: 202 QWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYP 261
Query: 134 ASNLV---AENNPPLFKRVPVEEYFRNLCARKLRGKSP 168
           A  LV   AE N  ++ +   ++Y +     K + K P
Sbjct: 262 APALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAKEP 299
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-71
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-69
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 6e-40
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-35
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-33
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-29
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  218 bits (557), Expect = 1e-71
 Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)

Query: 1   MNLVSKMGKVLIIKVEELREYF---ENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTI 57
             L+  + + L ++   L+  F   +       ++ YPPCP+P+ I GL  H+D   + +
Sbjct: 126 EELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIIL 185

Query: 58  LLEINEVEGLQIKKDGKWIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRL 117
           L + ++V GLQ+ KDG+WI V P  ++ VVN+G  LE++TNG Y+S+ HRVI      R+
Sbjct: 186 LFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARM 245

Query: 118 SIGTIYLVIYDGEMYPASNLV---AENNPPLFKRVPVEEYFRNLCARKLRGKSP-LDALR 173
           S+ + Y    D  +YPA  LV   AE N  ++ +   ++Y +     K + K P  +A++
Sbjct: 246 SLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMK 305

Query: 174 I 174
            
Sbjct: 306 A 306
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.89
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 91.1
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 90.92
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 89.76
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 86.48
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 86.09
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 84.14
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 81.74
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
Probab=100.00  E-value=7.1e-52  Score=353.66  Aligned_cols=174  Identities=33%  Similarity=0.634  Sum_probs=158.0

Q ss_pred             HHHHHHHHhCCCChhhHHhhhcC---CcceEEEeecCCCCCCCccccccCcCCCCCceEEEecCCcceeEEeeCCeeeee
Q 046507            2 NLVSKMGKVLIIKVEELREYFEN---GFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPV   78 (187)
Q Consensus         2 ~ll~~ia~~Lgl~~~~f~~~~~~---~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~qd~~~~GLqV~~~g~W~~V   78 (187)
                      +||++||++||+++++|.+.+..   +.+.+|++|||||++++...|+++|||+|+||+|+||++++||||.++|+|++|
T Consensus       127 ~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~~g~Wi~V  206 (319)
T 1w9y_A          127 ELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDV  206 (319)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEEC
T ss_pred             HHHHHHHHHcCCCHHHHHHHhcCcCCccceeEEEecCCCcccccccccccccCCCceEEEEecCCCCeeeEeeCCeEEEc
Confidence            68999999999999999998873   557899999999999888899999999999999999657999999999999999


Q ss_pred             ccCCCeEEEechhhhhhhcCCceecccCCCcCCCCCCccceeeeeeeCCCeEEecCcccccCC---CCCCCCCccHHHHH
Q 046507           79 TPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPASNLVAEN---NPPLFKRVPVEEYF  155 (187)
Q Consensus        79 ~~~~~~~vVn~Gd~l~~lSnG~~~s~~HRV~~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~---~~~~y~~~~~~ey~  155 (187)
                      +|.||++|||+||+||+||||+|||+.|||+.+++.+|+|++||++|+.|++|.|++++++++   +|++|++++++||+
T Consensus       207 ~p~pgalvVNiGD~l~~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~  286 (319)
T 1w9y_A          207 PPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYM  286 (319)
T ss_dssp             CCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHH
T ss_pred             ccCCCcEEEEhHHHHHHHhCCeeecccceecCCCCCCceEEEEEecCCCCCeEeCchhhcCcccccCccccCcEeHHHHH
Confidence            999999999999999999999999999999999889999999999999999999999999887   59999999999999


Q ss_pred             HHHHHhhcCCCCc-ccccccc
Q 046507          156 RNLCARKLRGKSP-LDALRIE  175 (187)
Q Consensus       156 ~~~~~~~~~g~~~-~~~~~~~  175 (187)
                      ..+++..+.++.. ++.+|+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~  307 (319)
T 1w9y_A          287 KLYAGLKFQAKEPRFEAMKAM  307 (319)
T ss_dssp             HTTTTTTCSSHHHHHHHHHHC
T ss_pred             HHHHhhhcCcchhHHHHHHHH
Confidence            9999888877754 6777765
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 187
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 8e-28
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-27
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 7e-16
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 6e-15
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  103 bits (258), Expect = 8e-28
 Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 7/166 (4%)

Query: 15  VEELREYFENGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGK 74
           ++      +       ++ YPPCP+P+ I GL  H+D   + +L + ++V GLQ+ KDG+
Sbjct: 142 LKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ 201

Query: 75  WIPVTPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPA 134
           WI V P  ++ VVN+G  LE++TNG Y+S+ HRVI      R+S+ + Y    D  +YPA
Sbjct: 202 WIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPA 261

Query: 135 SNLV---AENNPPLFKRVPVEEYFRNLCARKLRGKSPLDALRIEHV 177
             LV   AE N  ++ +   ++Y +     K + K P    R E +
Sbjct: 262 PALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEP----RFEAM 303
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.15
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 87.61
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=3.3e-50  Score=338.21  Aligned_cols=166  Identities=34%  Similarity=0.634  Sum_probs=150.8

Q ss_pred             HHHHHHHHhCCCChhhHHhhhc---CCcceEEEeecCCCCCCCccccccCcCCCCCceEEEecCCcceeEEeeCCeeeee
Q 046507            2 NLVSKMGKVLIIKVEELREYFE---NGFQSIGMNYYPPCPQPEKIVGLTPHSDDSALTILLEINEVEGLQIKKDGKWIPV   78 (187)
Q Consensus         2 ~ll~~ia~~Lgl~~~~f~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~qd~~~~GLqV~~~g~W~~V   78 (187)
                      +|++++|++||+++++|.+.+.   ...+.+|++||||+++++...|+++|||+|+||+|+|++.++||||.++|+|++|
T Consensus       126 ~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~~g~Wi~v  205 (307)
T d1w9ya1         126 ELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDV  205 (307)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEEC
T ss_pred             HHHHHHHHHcCCchHHHHhhhhccccccccceecCCCCCcccccccccccccccceeEEeeccCCCCeEEEecCCcEEEe
Confidence            6899999999999999998874   3467899999999999888899999999999999999767899999999999999


Q ss_pred             ccCCCeEEEechhhhhhhcCCceecccCCCcCCCCCCccceeeeeeeCCCeEEecCccccc---CCCCCCCCCccHHHHH
Q 046507           79 TPFPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSVQGRLSIGTIYLVIYDGEMYPASNLVA---ENNPPLFKRVPVEEYF  155 (187)
Q Consensus        79 ~~~~~~~vVn~Gd~l~~lSnG~~~s~~HRV~~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~---~~~~~~y~~~~~~ey~  155 (187)
                      +|.+|++|||+||+||+||||+|+||.|||+.+++.+|+|++||++|+.|++|+|+|++++   +++|++|+|+|++||+
T Consensus       206 ~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~  285 (307)
T d1w9ya1         206 PPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYM  285 (307)
T ss_dssp             CCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHH
T ss_pred             ccCCCeEEEEcchhhHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCCCCEEeCCHHHhcccCccCCCCCCCeeHHHHH
Confidence            9999999999999999999999999999999998899999999999999999999999986   4578999999999999


Q ss_pred             HHHHHhhcCCCC
Q 046507          156 RNLCARKLRGKS  167 (187)
Q Consensus       156 ~~~~~~~~~g~~  167 (187)
                      +.+.+.++.++.
T Consensus       286 ~~~~~~~~~~~~  297 (307)
T d1w9ya1         286 KLYAGLKFQAKE  297 (307)
T ss_dssp             HTTTTTTCSSHH
T ss_pred             HHHHhccCCccc
Confidence            988888877654
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure