Citrus Sinensis ID: 046697

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MDASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGHE
Secondary Structure (PSIPRED)
ccccccccccccHHHHHcHHHHHHHHcccccccccccEEEEEEEEccccccccHHHcccccccccccEEEEEEccccccccEEEEEEEcccccccEEEEcccccccccEEEEEEEccccccEEEEEEEEEEEcccccEEEEEEEEEEEEEccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHccccccccccEEEEEEEccccEEEEEEEEEEcccccccccHHHHHccccccEEEEEEEccccccccEEEEEEEcccccccccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mdasqappqgltpeeyAELRPIIERYhkfeqkpntcVSLITqridapahvvwpfvrrfdnpqkYKHFIKScnmhgdggvgsIREVTVvsglpaststerLEILDDEKHILSFRVVggehrlnnyrsvtsvnefqkggeIYTIVTESYVvdipegntvedTKMFVDTVVKLNLQKLGVVSMASLHGHE
Flexible Loop (DISEMBL)
mdasqappqgltpeeyAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVggehrlnnyrsvtsvnefqkgGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLgvvsmaslhghe
Low Complexity Region (SEG)
MDASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGHE
Disordered region (IsUnstruct)
*****************ELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM*******
Disordered Region (DISOPRED)
***************YAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIK*********VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVV*********
Disordered Region (DISEMBL)
**********LTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGHE
Disordered Region (DISPRO)
*******PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGHE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
O80992	190	Abscisic acid receptor PY	yes	no	0.989	0.973	0.682	2e-70
Q9SSM7	209	Abscisic acid receptor PY	no	no	0.935	0.837	0.639	1e-63
O49686	191	Abscisic acid receptor PY	no	no	0.930	0.910	0.579	6e-56
Q9FGM1	188	Abscisic acid receptor PY	no	no	0.855	0.851	0.531	7e-45
Q8VZS8	221	Abscisic acid receptor PY	no	no	0.946	0.800	0.516	1e-44
Q9FLB1	203	Abscisic acid receptor PY	no	no	0.807	0.743	0.551	9e-43
Q1ECF1	211	Abscisic acid receptor PY	no	no	0.818	0.725	0.522	1e-42
O80920	207	Abscisic acid receptor PY	no	no	0.812	0.734	0.579	6e-42
Q84MC7	187	Abscisic acid receptor PY	no	no	0.839	0.839	0.496	7e-42
Q8S8E3	215	Abscisic acid receptor PY	no	no	0.823	0.716	0.531	1e-41

>sp|O80992|PYL2_ARATH Abscisic acid receptor PYL2 OS=Arabidopsis thaliana GN=PYL2 PE=1 SV=1

 Score =  264 bits (675), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 150/189 (79%), Gaps = 4/189 (2%)

Query: 3   ASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQ 62
           +S    +GLT EE   L P+I+ YH+FE  P TC SLITQRI APA VVWP +RRFDNP+
Sbjct: 2   SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPE 61

Query: 63  KYKHFIKSCNM-HGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
           +YKHF+K C +  GDG VGS+REVTV+SGLPASTSTERLE +DD+  +LSFRVVGGEHRL
Sbjct: 62  RYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRL 121

Query: 122 NNYRSVTSVNEF--QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
            NY+SVTSVNEF  Q  G++YT+V ESY VDIPEGNT EDTKMFVDTVVKLNLQKLGV +
Sbjct: 122 KNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAA 181

Query: 180 M-ASLHGHE 187
             A +H  E
Sbjct: 182 TSAPMHDDE 190

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSM7|PYL3_ARATH Abscisic acid receptor PYL3 OS=Arabidopsis thaliana GN=PYL3 PE=1 SV=1

 Score =  241 bits (616), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/186 (63%), Positives = 140/186 (75%), Gaps = 11/186 (5%)

Query: 8   PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
           P GLT +E++ L  II  +H F + PNTC SLI  R+DAPAH +W FVR F NP KYKHF
Sbjct: 22  PYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHF 81

Query: 68  IKSCNMHGDGG------VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
           IKSC +  +G       VG+IREV+VVSGLPASTS E LE+LD+EK ILSFRV+GGEHRL
Sbjct: 82  IKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRL 141

Query: 122 NNYRSVTSVNEF-----QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG 176
           NNYRSVTSVNEF      K   +Y++V ESY+VDIP+GNT EDT+MFVDTVVK NLQ L 
Sbjct: 142 NNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLA 201

Query: 177 VVSMAS 182
           V+S AS
Sbjct: 202 VISTAS 207

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|O49686|PYR1_ARATH Abscisic acid receptor PYR1 OS=Arabidopsis thaliana GN=PYR1 PE=1 SV=1

 Score =  216 bits (550), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 131/176 (74%), Gaps = 2/176 (1%)

Query: 8   PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
           P  LTPEE +EL+  I  +H ++  P +C SL  QRI AP  +VW  VRRFD PQ YKHF
Sbjct: 2   PSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHF 61

Query: 68  IKSCNMHGD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYR 125
           IKSC++  +    VG  R+V V+SGLPA+TSTERL+ILDDE+ +  F ++GGEHRL NY+
Sbjct: 62  IKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYK 121

Query: 126 SVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181
           SVT+V+ F+K   I+T+V ESYVVD+PEGN+ +DT+MF DTVVKLNLQKL  V+ A
Sbjct: 122 SVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 177

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGM1|PYL8_ARATH Abscisic acid receptor PYL8 OS=Arabidopsis thaliana GN=PYL8 PE=1 SV=1

 Score =  179 bits (455), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 113/160 (70%)

Query: 20  RPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGV 79
           R  I R+HK E   N C S + + I+AP H+VW  VRRFD PQKYK FI  C + G+  +
Sbjct: 16  REFIRRHHKHELVDNQCSSTLVKHINAPVHIVWSLVRRFDQPQKYKPFISRCVVKGNMEI 75

Query: 80  GSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEI 139
           G++REV V SGLPA+ STERLE+LDD +HILS R+VGG+HRL NY S+ S++     G I
Sbjct: 76  GTVREVDVKSGLPATRSTERLELLDDNEHILSIRIVGGDHRLKNYSSIISLHPETIEGRI 135

Query: 140 YTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
            T+V ES+VVD+PEGNT ++T  FV+ ++K NL+ L  +S
Sbjct: 136 GTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 175

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZS8|PYL1_ARATH Abscisic acid receptor PYL1 OS=Arabidopsis thaliana GN=PYL1 PE=1 SV=1

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 126/182 (69%), Gaps = 5/182 (2%)

Query: 5   QAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKY 64
           Q  P  LT +E+ +L   I  +H ++     C SL+ QRI AP   VW  VRRFD PQ Y
Sbjct: 26  QTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIY 85

Query: 65  KHFIKSCNMHGD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLN 122
           KHFIKSCN+  D    VG  R+V V+SGLPA+TS ERL++LDD++ +  F + GGEHRL 
Sbjct: 86  KHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR 145

Query: 123 NYRSVTSVNEF---QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           NY+SVT+V+ F   ++   I+T+V ESYVVD+PEGN+ EDT++F DTV++LNLQKL  ++
Sbjct: 146 NYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASIT 205

Query: 180 MA 181
            A
Sbjct: 206 EA 207

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB1|PYL5_ARATH Abscisic acid receptor PYL5 OS=Arabidopsis thaliana GN=PYL5 PE=1 SV=1

 Score =  172 bits (437), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 86/156 (55%), Positives = 111/156 (71%), Gaps = 5/156 (3%)

Query: 23  IERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNM-HGDG-GVG 80
           +  +H  +  P+ C S + Q I AP   VW  VRRFDNP+ YK+FI+ C +  GDG  VG
Sbjct: 45  VAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLHVG 104

Query: 81  SIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIY 140
            +REV VVSGLPA +STERLEILD+E+H++SF VVGG+HRL NYRSVT+++     G   
Sbjct: 105 DLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLHASDDEG--- 161

Query: 141 TIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG 176
           T+V ESY+VD+P GNT E+T  FVDT+V+ NLQ L 
Sbjct: 162 TVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLA 197

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECF1|PYL7_ARATH Abscisic acid receptor PYL7 OS=Arabidopsis thaliana GN=PYL7 PE=1 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/153 (52%), Positives = 107/153 (69%)

Query: 27  HKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVT 86
           H    + N C S++ + I AP H+VW  VRRFD PQKYK FI  C ++GD  +G +REV 
Sbjct: 27  HLHHCRENQCTSVLVKYIQAPVHLVWSLVRRFDQPQKYKPFISRCTVNGDPEIGCLREVN 86

Query: 87  VVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTES 146
           V SGLPA+TSTERLE LDDE+HIL   ++GG+HRL NY S+ +V+     G   T+V ES
Sbjct: 87  VKSGLPATTSTERLEQLDDEEHILGINIIGGDHRLKNYSSILTVHPEMIDGRSGTMVMES 146

Query: 147 YVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           +VVD+P+GNT +DT  FV++++K NL+ L  VS
Sbjct: 147 FVVDVPQGNTKDDTCYFVESLIKCNLKSLACVS 179

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|O80920|PYL4_ARATH Abscisic acid receptor PYL4 OS=Arabidopsis thaliana GN=PYL4 PE=1 SV=1

 Score =  170 bits (430), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 91/157 (57%), Positives = 116/157 (73%), Gaps = 5/157 (3%)

Query: 25  RYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGG--VGSI 82
           R+H  E  PN C S + Q I AP   VW  VRRFDNPQ YKHF+KSC++ G  G  VGS+
Sbjct: 41  RFHTHEVGPNQCCSAVIQEISAPISTVWSVVRRFDNPQAYKHFLKSCSVIGGDGDNVGSL 100

Query: 83  REVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTI 142
           R+V VVSGLPA++STERL+ILDDE+H++SF VVGG+HRL+NYRSVT+++     G   T+
Sbjct: 101 RQVHVVSGLPAASSTERLDILDDERHVISFSVVGGDHRLSNYRSVTTLHPSPISG---TV 157

Query: 143 VTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           V ESYVVD+P GNT E+T  FVD +V+ NLQ L  ++
Sbjct: 158 VVESYVVDVPPGNTKEETCDFVDVIVRCNLQSLAKIA 194

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84MC7|PYL9_ARATH Abscisic acid receptor PYL9 OS=Arabidopsis thaliana GN=PYL9 PE=1 SV=1

 Score =  169 bits (429), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 110/157 (70%)

Query: 23  IERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSI 82
           +  +H+   + N C S + + I AP H+VW  VRRFD PQKYK F+  C + GD  +GS+
Sbjct: 21  VRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTVIGDPEIGSL 80

Query: 83  REVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTI 142
           REV V SGLPA+TSTERLE+LDDE+HIL  +++GG+HRL NY S+ +V+     G   T+
Sbjct: 81  REVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEIIEGRAGTM 140

Query: 143 VTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           V ES+VVD+P+GNT ++T  FV+ +++ NL+ L  VS
Sbjct: 141 VIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVS 177

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8E3|PYL6_ARATH Abscisic acid receptor PYL6 OS=Arabidopsis thaliana GN=PYL6 PE=1 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 4/158 (2%)

Query: 23  IERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGG-VG 80
           +E  H     P+ C S++ Q ++AP   VW  + RF++PQ YKHF+KSC++  GDG  VG
Sbjct: 48  VELSHTHVVGPSQCFSVVVQDVEAPVSTVWSILSRFEHPQAYKHFVKSCHVVIGDGREVG 107

Query: 81  SIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQK--GGE 138
           S+REV VVSGLPA+ S ERLEI+DD++H++SF VVGG+HRL NY+SVT+V+E ++   G+
Sbjct: 108 SVREVRVVSGLPAAFSLERLEIMDDDRHVISFSVVGGDHRLMNYKSVTTVHESEEDSDGK 167

Query: 139 IYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG 176
             T V ESYVVD+P GN  E+T  F DT+V+ NLQ L 
Sbjct: 168 KRTRVVESYVVDVPAGNDKEETCSFADTIVRCNLQSLA 205

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
255550818	189	conserved hypothetical protein [Ricinus	1.0	0.989	0.820	3e-86
356554070	210	PREDICTED: abscisic acid receptor PYL2-l	0.946	0.842	0.831	1e-82
224142879	175	predicted protein [Populus trichocarpa]	0.930	0.994	0.84	1e-81
296081625	185	unnamed protein product [Vitis vinifera]	0.957	0.967	0.815	4e-80
224088850	175	predicted protein [Populus trichocarpa]	0.919	0.982	0.839	6e-80
356562193	188	PREDICTED: abscisic acid receptor PYL2-l	0.930	0.925	0.810	1e-78
449447331	193	PREDICTED: abscisic acid receptor PYL2-l	0.946	0.917	0.803	6e-78
356509815	189	PREDICTED: abscisic acid receptor PYL2-l	0.994	0.984	0.751	2e-75
357437499	189	Abscisic acid receptor PYL2 [Medicago tr	0.983	0.973	0.744	3e-75
356518155	187	PREDICTED: abscisic acid receptor PYL2-l	0.962	0.962	0.762	2e-74

>gi|255550818|ref|XP_002516457.1| conserved hypothetical protein [Ricinus communis] gi|223544277|gb|EEF45798.1| conserved hypothetical protein [Ricinus communis]

 Score =  322 bits (826), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 155/189 (82%), Positives = 171/189 (90%), Gaps = 2/189 (1%)

Query: 1   MDASQAPP-QGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFD 59
           M+ S++PP QGLT EEY+EL+P+++ YHKFE  PNTC SLITQRIDAP+ VVWPFVR F+
Sbjct: 1   MEPSRSPPPQGLTREEYSELKPLVDTYHKFEPTPNTCTSLITQRIDAPSQVVWPFVRSFE 60

Query: 60  NPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEH 119
           NPQKYKHFIKSCNM GDGG+GSIREVTVVSG+PASTSTERLEILDDEKHILSFRVVGGEH
Sbjct: 61  NPQKYKHFIKSCNMRGDGGIGSIREVTVVSGIPASTSTERLEILDDEKHILSFRVVGGEH 120

Query: 120 RLNNYRSVTSVNEF-QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVV 178
           RLNNYRSVTSVNEF    G++YTIV ESY+VDIPEGNT EDTKMFVDTVVKLNLQKL VV
Sbjct: 121 RLNNYRSVTSVNEFINNEGKVYTIVLESYIVDIPEGNTGEDTKMFVDTVVKLNLQKLAVV 180

Query: 179 SMASLHGHE 187
           + ASLHGHE
Sbjct: 181 ATASLHGHE 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554070|ref|XP_003545372.1| PREDICTED: abscisic acid receptor PYL2-like [Glycine max]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/178 (83%), Positives = 160/178 (89%), Gaps = 1/178 (0%)

Query: 9   QGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFI 68
           QGLTPEE  +L PII++YH FEQ PNTC S+IT RI+APA  VWPFVR FDNPQKYKHFI
Sbjct: 32  QGLTPEELTKLEPIIKKYHLFEQSPNTCFSIITYRIEAPAKAVWPFVRSFDNPQKYKHFI 91

Query: 69  KSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVT 128
           K CNM GDGGVGSIREVTVVSGLPASTSTERLEILDD+KH+LSFRVVGGEHRL NYRSVT
Sbjct: 92  KGCNMRGDGGVGSIREVTVVSGLPASTSTERLEILDDDKHVLSFRVVGGEHRLKNYRSVT 151

Query: 129 SVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA-SLHG 185
           SVNEF K G++YTIV ESY+VDIPEGNT EDTKMFVDTVVKLNLQKLGVV+MA S+HG
Sbjct: 152 SVNEFNKEGKVYTIVLESYIVDIPEGNTEEDTKMFVDTVVKLNLQKLGVVAMASSMHG 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142879|ref|XP_002324762.1| predicted protein [Populus trichocarpa] gi|222866196|gb|EEF03327.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/175 (84%), Positives = 157/175 (89%), Gaps = 1/175 (0%)

Query: 8   PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
           PQGLT EEY EL+P+I+ YHKFE  PNTC SLITQRIDAPAHVVWPFVRRFDNPQKYKHF
Sbjct: 1   PQGLTQEEYMELKPLIDTYHKFEPAPNTCTSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 60

Query: 68  IKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRS 126
           IKSCNM  GDGGVGS+REV VVSGLPASTS ERLEILDDE HILSFRVVGGEHRLNNY+S
Sbjct: 61  IKSCNMSAGDGGVGSVREVAVVSGLPASTSIERLEILDDENHILSFRVVGGEHRLNNYKS 120

Query: 127 VTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181
           VTSVNEF K G++Y IV ESY+VDIP GNT EDTKMFVDTVVKLNLQKL VV++A
Sbjct: 121 VTSVNEFNKEGKVYAIVLESYIVDIPGGNTGEDTKMFVDTVVKLNLQKLAVVAIA 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081625|emb|CBI20630.3| unnamed protein product [Vitis vinifera]

 Score =  302 bits (773), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 146/179 (81%), Positives = 156/179 (87%)

Query: 9   QGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFI 68
            GLT EE+  L PII+ YH FE  PNTC SLITQ+IDAPA VVWPFVR F+NPQKYKHFI
Sbjct: 7   HGLTEEEFRALEPIIQNYHTFEPSPNTCTSLITQKIDAPAQVVWPFVRSFENPQKYKHFI 66

Query: 69  KSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVT 128
           K C M GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVT
Sbjct: 67  KDCTMRGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVT 126

Query: 129 SVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGHE 187
           SVN+F K G+ YTIV ESY+VDIPEGNT EDTKMFVDTVVKLNLQKL VV++ SLH +E
Sbjct: 127 SVNDFSKEGKDYTIVLESYIVDIPEGNTGEDTKMFVDTVVKLNLQKLAVVAITSLHENE 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088850|ref|XP_002308568.1| predicted protein [Populus trichocarpa] gi|222854544|gb|EEE92091.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (772), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/174 (83%), Positives = 157/174 (90%), Gaps = 2/174 (1%)

Query: 8   PQGLTPEEYAELRPIIERYHKFEQK-PNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKH 66
           PQGLT EEY EL+P+I+ YHKF    PNTC SLITQRIDAPAHVVWPFVRRFDNPQKYKH
Sbjct: 2   PQGLTQEEYVELKPLIDTYHKFGAAVPNTCTSLITQRIDAPAHVVWPFVRRFDNPQKYKH 61

Query: 67  FIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYR 125
           FIKSC M  GDGGVGSIREVTVVSG+PASTSTERLEILDDE HILSFRVVGGEHRLNNY+
Sbjct: 62  FIKSCKMSAGDGGVGSIREVTVVSGIPASTSTERLEILDDENHILSFRVVGGEHRLNNYK 121

Query: 126 SVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           SVTSVNEF K  ++YTIV ESY+VDIP+GNTVEDT+MFVDTVVKLNLQKL VV+
Sbjct: 122 SVTSVNEFNKEDKVYTIVLESYIVDIPDGNTVEDTEMFVDTVVKLNLQKLAVVA 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562193|ref|XP_003549356.1| PREDICTED: abscisic acid receptor PYL2-like [Glycine max]

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/174 (81%), Positives = 152/174 (87%)

Query: 9   QGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFI 68
           QGLTPEE  +L PII++YH FE   N C S+IT RI+APA  VWP VR FDNPQKYKHFI
Sbjct: 10  QGLTPEELTQLEPIIKKYHLFEASSNKCFSIITHRIEAPASSVWPLVRNFDNPQKYKHFI 69

Query: 69  KSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVT 128
           K CNM GDG VGSIREVTVVSGLPASTSTERLEILDD+KH+LSFRVVGGEHRL NYRSVT
Sbjct: 70  KGCNMKGDGSVGSIREVTVVSGLPASTSTERLEILDDDKHVLSFRVVGGEHRLQNYRSVT 129

Query: 129 SVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS 182
           SVNEF K G++YTIV ESY+VDIPEGNT EDTKMFVDTVVKLNLQKLGVV+MAS
Sbjct: 130 SVNEFHKEGKVYTIVLESYIVDIPEGNTEEDTKMFVDTVVKLNLQKLGVVAMAS 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447331|ref|XP_004141422.1| PREDICTED: abscisic acid receptor PYL2-like [Cucumis sativus] gi|449486756|ref|XP_004157392.1| PREDICTED: abscisic acid receptor PYL2-like [Cucumis sativus]

 Score =  295 bits (755), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 143/178 (80%), Positives = 153/178 (85%), Gaps = 1/178 (0%)

Query: 6   APPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYK 65
           +P  GL  +EY EL+P+I+ YHKFE  PNT  SLITQRIDAP   VWPFVR FDNPQKYK
Sbjct: 7   SPLPGLEADEYQELQPLIQTYHKFEPSPNTTTSLITQRIDAPLDAVWPFVRSFDNPQKYK 66

Query: 66  HFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNY 124
           HFIKSC M  GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNY
Sbjct: 67  HFIKSCKMSAGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNY 126

Query: 125 RSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS 182
           RSVTSVNEF K  ++YTIV ESY+VDIPEGNT EDTKMFVDTV+KLNLQKL  V+ AS
Sbjct: 127 RSVTSVNEFNKDSKVYTIVLESYIVDIPEGNTGEDTKMFVDTVIKLNLQKLAGVATAS 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509815|ref|XP_003523641.1| PREDICTED: abscisic acid receptor PYL2-like [Glycine max]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 142/189 (75%), Positives = 157/189 (83%), Gaps = 3/189 (1%)

Query: 1   MDASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDN 60
           M +   P  GLTPEE++EL  II  +HKFE  P  C S+I QRIDAPAH VWP VR F+N
Sbjct: 1   MASEAYPVLGLTPEEFSELESIINTHHKFEPSPEICSSIIAQRIDAPAHTVWPLVRSFEN 60

Query: 61  PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEH 119
           PQKYKHF+KSCNM  GDGGVGSIREVTVVSGLPASTSTERLEILDD+KH+LSFRVVGGEH
Sbjct: 61  PQKYKHFVKSCNMRSGDGGVGSIREVTVVSGLPASTSTERLEILDDDKHLLSFRVVGGEH 120

Query: 120 RLNNYRSVTSVNEFQK--GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGV 177
           RL+NYRSVTSVNEF+    G++YTIV ESYVVDIPEGNT  DTKMFVDTVVKLNLQKLG 
Sbjct: 121 RLHNYRSVTSVNEFKNPDNGKVYTIVLESYVVDIPEGNTGVDTKMFVDTVVKLNLQKLGE 180

Query: 178 VSMASLHGH 186
           V+MA+   H
Sbjct: 181 VAMATTTLH 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437499|ref|XP_003589025.1| Abscisic acid receptor PYL2 [Medicago truncatula] gi|355478073|gb|AES59276.1| Abscisic acid receptor PYL2 [Medicago truncatula]

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 140/188 (74%), Positives = 157/188 (83%), Gaps = 4/188 (2%)

Query: 3   ASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQ 62
           AS    QGLT EEY EL PII++YH  E   NTC S+IT +I+AP+ +VWP+VR F+NPQ
Sbjct: 2   ASVHNIQGLTEEEYKELEPIIKKYHILEPTSNTCTSIITYKIEAPSSIVWPYVRSFENPQ 61

Query: 63  KYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLN 122
           KYKHFIK CNM GDG VGSIREVTVVSGLPASTSTERLEILDDEKH++SFRVVGGEHRL 
Sbjct: 62  KYKHFIKGCNMKGDGNVGSIREVTVVSGLPASTSTERLEILDDEKHVISFRVVGGEHRLQ 121

Query: 123 NYRSVTSVNEF-QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM- 180
           NYRSVTSVNEF    G++YTIV ESY+VDIP GNT EDTKMFVDTVVKLNLQKLGVV+M 
Sbjct: 122 NYRSVTSVNEFVNNEGKVYTIVLESYIVDIPHGNTEEDTKMFVDTVVKLNLQKLGVVAMS 181

Query: 181 --ASLHGH 186
             +S+HG 
Sbjct: 182 SCSSMHGQ 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518155|ref|XP_003527747.1| PREDICTED: abscisic acid receptor PYL2-like [Glycine max]

 Score =  283 bits (724), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/185 (76%), Positives = 156/185 (84%), Gaps = 5/185 (2%)

Query: 3   ASQA--PPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDN 60
           AS+A  P  GLTPEE+ EL   I  +HKFE  P  C S+I QRIDAPAH VWP VR F+N
Sbjct: 2   ASEAYDPVLGLTPEEFTELESTINTHHKFEASPEICSSIIAQRIDAPAHTVWPLVRSFEN 61

Query: 61  PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEH 119
           PQKYKHF+KSCNM  GDGGVGSIREVTVVSGLPASTSTERLEILDD+ H+LSFRVVGGEH
Sbjct: 62  PQKYKHFVKSCNMRSGDGGVGSIREVTVVSGLPASTSTERLEILDDDNHLLSFRVVGGEH 121

Query: 120 RLNNYRSVTSVNEFQK--GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGV 177
           RL+NYRSVTSVNEF++   G++YTIV ESYVVDIPEGNT  DTKMFVDTVVKLNLQKLG 
Sbjct: 122 RLHNYRSVTSVNEFKRPDNGKVYTIVLESYVVDIPEGNTGVDTKMFVDTVVKLNLQKLGE 181

Query: 178 VSMAS 182
           V+MA+
Sbjct: 182 VAMAT 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2057407	190	PYL2 "PYR1-like 2" [Arabidopsi	0.983	0.968	0.687	7.4e-66
TAIR|locus:2032738	209	PYL3 "AT1G73000" [Arabidopsis	0.957	0.856	0.636	1.5e-58
TAIR|locus:2141040	191	PYR1 "PYRABACTIN RESISTANCE 1"	0.930	0.910	0.579	9.2e-52
TAIR|locus:2178585	221	PYL1 "PYR1-like 1" [Arabidopsi	0.946	0.800	0.527	1.2e-47
TAIR|locus:2057175	207	PYL4 "PYR1-like 4" [Arabidopsi	0.812	0.734	0.585	9.1e-45
TAIR|locus:2163731	188	RCAR3 "regulatory components o	0.855	0.851	0.531	1.5e-42
TAIR|locus:2153549	203	PYL5 "PYRABACTIN RESISTANCE 1-	0.802	0.738	0.554	2.2e-41
TAIR|locus:2063063	215	PYL6 "PYR1-like 6" [Arabidopsi	0.850	0.739	0.521	2e-40
TAIR|locus:505006424	211	PYL7 "PYR1-like 7" [Arabidopsi	0.818	0.725	0.522	2e-40
TAIR|locus:2152420	161	PYL11 "AT5G45860" [Arabidopsis	0.818	0.950	0.548	2.6e-40

TAIR|locus:2057407 PYL2 "PYR1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 130/189 (68%), Positives = 151/189 (79%)

Query:     4 SQAPP-QGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQ 62
             S +P  +GLT EE   L P+I+ YH+FE  P TC SLITQRI APA VVWP +RRFDNP+
Sbjct:     2 SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPE 61

Query:    63 KYKHFIKSCNM-HGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
             +YKHF+K C +  GDG VGS+REVTV+SGLPASTSTERLE +DD+  +LSFRVVGGEHRL
Sbjct:    62 RYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRL 121

Query:   122 NNYRSVTSVNEF--QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
              NY+SVTSVNEF  Q  G++YT+V ESY VDIPEGNT EDTKMFVDTVVKLNLQKLGV +
Sbjct:   122 KNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAA 181

Query:   180 M-ASLHGHE 187
               A +H  E
Sbjct:   182 TSAPMHDDE 190

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2032738 PYL3 "AT1G73000" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 121/190 (63%), Positives = 144/190 (75%)

Query:     4 SQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQK 63
             S + P GLT +E++ L  II  +H F + PNTC SLI  R+DAPAH +W FVR F NP K
Sbjct:    18 SSSTPYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNK 77

Query:    64 YKHFIKSCNM--HGDG----GVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG 117
             YKHFIKSC +  +G+G     VG+IREV+VVSGLPASTS E LE+LD+EK ILSFRV+GG
Sbjct:    78 YKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGG 137

Query:   118 EHRLNNYRSVTSVNEF-----QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNL 172
             EHRLNNYRSVTSVNEF      K   +Y++V ESY+VDIP+GNT EDT+MFVDTVVK NL
Sbjct:   138 EHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNL 197

Query:   173 QKLGVVSMAS 182
             Q L V+S AS
Sbjct:   198 QNLAVISTAS 207

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2141040 PYR1 "PYRABACTIN RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 102/176 (57%), Positives = 131/176 (74%)

Query:     8 PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
             P  LTPEE +EL+  I  +H ++  P +C SL  QRI AP  +VW  VRRFD PQ YKHF
Sbjct:     2 PSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHF 61

Query:    68 IKSCNMHG--DGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYR 125
             IKSC++    +  VG  R+V V+SGLPA+TSTERL+ILDDE+ +  F ++GGEHRL NY+
Sbjct:    62 IKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYK 121

Query:   126 SVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181
             SVT+V+ F+K   I+T+V ESYVVD+PEGN+ +DT+MF DTVVKLNLQKL  V+ A
Sbjct:   122 SVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 177

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA;IPI

GO:0010427 "abscisic acid binding" evidence=IDA

GO:0080163 "regulation of protein serine/threonine phosphatase activity" evidence=IDA

GO:0004872 "receptor activity" evidence=IMP;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA;IPI

GO:0010029 "regulation of seed germination" evidence=RCA

TAIR|locus:2178585 PYL1 "PYR1-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 96/182 (52%), Positives = 127/182 (69%)

Query:     5 QAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKY 64
             Q  P  LT +E+ +L   I  +H ++     C SL+ QRI AP   VW  VRRFD PQ Y
Sbjct:    26 QTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIY 85

Query:    65 KHFIKSCNMHGDGG--VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLN 122
             KHFIKSCN+  D    VG  R+V V+SGLPA+TS ERL++LDD++ +  F + GGEHRL 
Sbjct:    86 KHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR 145

Query:   123 NYRSVTSVNEFQKGGE---IYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
             NY+SVT+V+ F+K  E   I+T+V ESYVVD+PEGN+ EDT++F DTV++LNLQKL  ++
Sbjct:   146 NYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASIT 205

Query:   180 MA 181
              A
Sbjct:   206 EA 207

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

GO:0010427 "abscisic acid binding" evidence=IDA

GO:0080163 "regulation of protein serine/threonine phosphatase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2057175 PYL4 "PYR1-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 92/157 (58%), Positives = 117/157 (74%)

Query:    25 RYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNM-HGDG-GVGSI 82
             R+H  E  PN C S + Q I AP   VW  VRRFDNPQ YKHF+KSC++  GDG  VGS+
Sbjct:    41 RFHTHEVGPNQCCSAVIQEISAPISTVWSVVRRFDNPQAYKHFLKSCSVIGGDGDNVGSL 100

Query:    83 REVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTI 142
             R+V VVSGLPA++STERL+ILDDE+H++SF VVGG+HRL+NYRSVT+++     G   T+
Sbjct:   101 RQVHVVSGLPAASSTERLDILDDERHVISFSVVGGDHRLSNYRSVTTLHPSPISG---TV 157

Query:   143 VTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
             V ESYVVD+P GNT E+T  FVD +V+ NLQ L  ++
Sbjct:   158 VVESYVVDVPPGNTKEETCDFVDVIVRCNLQSLAKIA 194

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

TAIR|locus:2163731 RCAR3 "regulatory components of ABA receptor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 85/160 (53%), Positives = 113/160 (70%)

Query:    20 RPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGV 79
             R  I R+HK E   N C S + + I+AP H+VW  VRRFD PQKYK FI  C + G+  +
Sbjct:    16 REFIRRHHKHELVDNQCSSTLVKHINAPVHIVWSLVRRFDQPQKYKPFISRCVVKGNMEI 75

Query:    80 GSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEI 139
             G++REV V SGLPA+ STERLE+LDD +HILS R+VGG+HRL NY S+ S++     G I
Sbjct:    76 GTVREVDVKSGLPATRSTERLELLDDNEHILSIRIVGGDHRLKNYSSIISLHPETIEGRI 135

Query:   140 YTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
              T+V ES+VVD+PEGNT ++T  FV+ ++K NL+ L  +S
Sbjct:   136 GTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 175

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2153549 PYL5 "PYRABACTIN RESISTANCE 1-LIKE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 86/155 (55%), Positives = 111/155 (71%)

Query:    23 IERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNM-HGDG-GVG 80
             +  +H  +  P+ C S + Q I AP   VW  VRRFDNP+ YK+FI+ C +  GDG  VG
Sbjct:    45 VAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLHVG 104

Query:    81 SIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIY 140
              +REV VVSGLPA +STERLEILD+E+H++SF VVGG+HRL NYRSVT+++     G   
Sbjct:   105 DLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLHASDDEG--- 161

Query:   141 TIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKL 175
             T+V ESY+VD+P GNT E+T  FVDT+V+ NLQ L
Sbjct:   162 TVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSL 196

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0010427 "abscisic acid binding" evidence=IDA

TAIR|locus:2063063 PYL6 "PYR1-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 85/163 (52%), Positives = 117/163 (71%)

Query:    17 AELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-G 75
             A++   +E  H     P+ C S++ Q ++AP   VW  + RF++PQ YKHF+KSC++  G
Sbjct:    42 ADVPEHVELSHTHVVGPSQCFSVVVQDVEAPVSTVWSILSRFEHPQAYKHFVKSCHVVIG 101

Query:    76 DGG-VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQ 134
             DG  VGS+REV VVSGLPA+ S ERLEI+DD++H++SF VVGG+HRL NY+SVT+V+E +
Sbjct:   102 DGREVGSVREVRVVSGLPAAFSLERLEIMDDDRHVISFSVVGGDHRLMNYKSVTTVHESE 161

Query:   135 KG--GEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKL 175
             +   G+  T V ESYVVD+P GN  E+T  F DT+V+ NLQ L
Sbjct:   162 EDSDGKKRTRVVESYVVDVPAGNDKEETCSFADTIVRCNLQSL 204

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

TAIR|locus:505006424 PYL7 "PYR1-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 80/153 (52%), Positives = 107/153 (69%)

Query:    27 HKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVT 86
             H    + N C S++ + I AP H+VW  VRRFD PQKYK FI  C ++GD  +G +REV 
Sbjct:    27 HLHHCRENQCTSVLVKYIQAPVHLVWSLVRRFDQPQKYKPFISRCTVNGDPEIGCLREVN 86

Query:    87 VVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTES 146
             V SGLPA+TSTERLE LDDE+HIL   ++GG+HRL NY S+ +V+     G   T+V ES
Sbjct:    87 VKSGLPATTSTERLEQLDDEEHILGINIIGGDHRLKNYSSILTVHPEMIDGRSGTMVMES 146

Query:   147 YVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
             +VVD+P+GNT +DT  FV++++K NL+ L  VS
Sbjct:   147 FVVDVPQGNTKDDTCYFVESLIKCNLKSLACVS 179

GO:0005634 "nucleus" evidence=ISM;IPI

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

TAIR|locus:2152420 PYL11 "AT5G45860" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 85/155 (54%), Positives = 106/155 (68%)

Query:    31 QKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVS 89
             QK +TC S + Q IDAP  +VW  +RRFDNPQ YK F+K+CN+  GDGG GS+REVTVVS
Sbjct:     5 QKYHTCGSTLVQTIDAPLSLVWSILRRFDNPQAYKQFVKTCNLSSGDGGEGSVREVTVVS 64

Query:    90 GLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVV 149
             GLPA  S ERL+ LDDE H++   ++GG+HRL NYRS T         E  T+V ESYVV
Sbjct:    65 GLPAEFSRERLDELDDESHVMMISIIGGDHRLVNYRSKTMAF-VAADTEEKTVVVESYVV 123

Query:   150 DIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLH 184
             D+PEGN+ E+T  F DT+V  NL+ L  +S    H
Sbjct:   124 DVPEGNSEEETTSFADTIVGFNLKSLAKLSERVAH 158

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80992	PYL2_ARATH	No assigned EC number	0.6825	0.9893	0.9736	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVIII.880.1 hypothetical protein (175 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	2e-32
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	3e-16
pfam10604	140	pfam10604, Polyketide_cyc2, Polyketide cyclase / d	1e-10
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	2e-07
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	2e-05
pfam03364	125	pfam03364, Polyketide_cyc, Polyketide cyclase / de	0.003

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score =  113 bits (284), Expect = 2e-32
 Identities = 49/141 (34%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 36  CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDG-GVGSIREVTVVSGLPAS 94
               ++  IDAPA  VW  +  F    K+   + SC + G G GVG++R VT+  G    
Sbjct: 1   AKVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG---G 57

Query: 95  TSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEG 154
           T  ERL  LDD +   S+R+V G   + NY +   V     GG   T VT +   D PEG
Sbjct: 58  TVRERLLALDDAERRYSYRIVEGPLPVKNYVATIRVTPEGDGG---TRVTWTAEFDPPEG 114

Query: 155 NTVEDTKMFVDTVVKLNLQKL 175
            T E  + F+  V +  L  L
Sbjct: 115 LTDELARAFLTGVYRAGLAAL 135

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score = 71.8 bits (177), Expect = 3e-16
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 17/138 (12%)

Query: 44  IDAPAHVVWP-FVRRFDN-PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERL 100
           +  PA  +W  FV      P K    IKS  +  GDGG GSI+ +T   G       ER+
Sbjct: 9   LKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERI 68

Query: 101 EILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQ-----KGGEIYTIVTESYVVD---IP 152
           + +D+E     + V+ G+   + Y+S     E +      GG +     E         P
Sbjct: 69  DAVDEENKTYKYTVIEGDVLKDGYKSY--KVEIKFVPKGDGGCVVKWTIEYEKKGDAEPP 126

Query: 153 EGNTVEDTKMFVDTVVKL 170
           E    E+ K   +  +K+
Sbjct: 127 E----EEIKAGKEKALKM 140

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|220822 pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 41  TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERL 100
           +  I AP   VW  V  F+N  ++   +    + G G +G +  +    G    T  E L
Sbjct: 7   SITIAAPPEKVWALVSDFENWPRWHPGVLRVELEGGGPLGVVGTLRAGGG---RTVREEL 63

Query: 101 EILDDEKHILSFRVVGGEHRLNNYRS 126
              D     L +R+V     + NY  
Sbjct: 64  VEYDPAGRRLEYRIVEP-LGVTNYVG 88

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily. Length = 140

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 66  HFIKSCNMH-GDGG-VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNN 123
           H I+   +H G+ G  GSI++ T           ER+E  D++   +++ V+ G   L +
Sbjct: 35  HHIQGVEVHEGEWGTGGSIKKWTYTEDGKPKVVKERIEADDEKNKTITYSVLEG-DVLED 93

Query: 124 YRSVTSVNEF---QKGGEIYTIVTE----SYVVDIPEGNTVEDTKMFVD 165
           Y+S  +  +      GG I     E       V  PE       K+  D
Sbjct: 94  YKSFITTLQVIPKSNGGSIVKWTIEYEKIGDDVPEPEKYLKFVVKLTKD 142

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 61  PQKYKHFIKSCNMH-GDGG-VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE 118
           P+   H I+  ++H GD G  GSI+              ER+E +DDEK  ++FRV+ G 
Sbjct: 31  PKATGHHIQGVDLHEGDWGSHGSIKIWNYTVDGKEEVFKERIEAVDDEKKTITFRVLEG- 89

Query: 119 HRLNNYRSVTSVNEF---QKGGEI--YTIVTESYVVDIPEGNTVED--TKMFVD 165
             +  Y+S     +      GG +  +T+  E    D+PE     D   ++  D
Sbjct: 90  DVMEEYKSFKGTIQVTPKSGGGSVVKWTLEYEKINEDVPEPEKYMDFVVELTKD 143

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

>gnl|CDD|217515 pfam03364, Polyketide_cyc, Polyketide cyclase / dehydrase and lipid transport

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 21/135 (15%), Positives = 36/135 (26%), Gaps = 14/135 (10%)

Query: 44  IDAPAHVVWPFVRRFDNPQKYKHFI---KSCNMHGDGGVGSIREVTVVSGLPASTSTERL 100
           + APA  VW  V   +    Y  F+   KS  +    G  +   V    GL  S +    
Sbjct: 1   VPAPAEQVWALVTDVER---YPEFLPWCKSVEVLDRDGSLADWRV-AFGGLRRSFTARVT 56

Query: 101 EILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDT 160
               +    +       +    ++R          G      VT     +          
Sbjct: 57  LQPPERI-EMVLVDGDFKRLEGSWRFE------PGGPGTRVKVTLELDFEFASPLPGALL 109

Query: 161 KMFVDTVVKLNLQKL 175
                 V++  L+  
Sbjct: 110 GFVFRRVLRTLLEAF 124

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. The family also includes proteins which are involved in the binding/transport of lipids. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	99.93
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	99.82
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.73
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.73
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.49
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.47
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.46
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.43
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.35
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.33
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.29
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.23
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.22
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.2
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.15
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.11
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.04
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	98.95
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	98.93
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	98.82
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	98.67
PRK10724	158	hypothetical protein; Provisional	98.59
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	98.53
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.5
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.47
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.4
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.37
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.31
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.17
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.17
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.15
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.08
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	98.08
COG5637	217	Predicted integral membrane protein [Function unkn	97.97
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	97.97
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	97.94
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	97.91
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	97.9
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	97.81
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	97.81
COG3832	149	Uncharacterized conserved protein [Function unknow	97.38
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	96.69
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	96.53
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	96.49
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	95.85
cd08905	209	START_STARD1-like Cholesterol-binding START domain	94.37
cd08906	209	START_STARD3-like Cholesterol-binding START domain	93.45
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	91.52
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	91.33
COG4276	153	Uncharacterized conserved protein [Function unknow	91.23
cd08871	222	START_STARD10-like Lipid-binding START domain of m	89.96
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	89.77
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	89.08
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	87.89
cd08913	240	START_STARD14-like Lipid-binding START domain of m	86.02
cd00177	193	START Lipid-binding START domain of mammalian STAR	85.86
cd08874	205	START_STARD9-like C-terminal START domain of mamma	84.14
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	82.21
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	81.59
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	80.29

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=99.93  E-value=2.1e-24  Score=166.87  Aligned_cols=110  Identities=25%  Similarity=0.368  Sum_probs=95.7

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCC--CccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDN--PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~--~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      ...+++|+||+|+||+++++|++  ++.|+|.|++|+++ |+|++||+|.|+|.+|++.++++|||+++|+++|+++|++
T Consensus         3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~v   82 (148)
T cd07816           3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYTV   82 (148)
T ss_pred             EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEEE
Confidence            45678999999999999999994  78999999999987 8888999999999988666789999999999999999999


Q ss_pred             Eecccc---CCCeeeEEEEEEecCCCceEEEEEEEE
Q 046697          115 VGGEHR---LNNYRSVTSVNEFQKGGEIYTIVTESY  147 (187)
Q Consensus       115 veg~~p---~~~y~a~~~v~~~~~~g~~~t~~~~~~  147 (187)
                      ++|+++   +++|.+++++.+.+++++.++|...+.
T Consensus        83 veg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye  118 (148)
T cd07816          83 IEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYE  118 (148)
T ss_pred             EecccccCceEEEEEEEEEEECCCCCEEEEEEEEEE
Confidence            999874   789999999999855566666655543

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=99.82  E-value=3.5e-19  Score=138.55  Aligned_cols=106  Identities=26%  Similarity=0.466  Sum_probs=84.3

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCC--CccccccceeeEec-CCCCCC-eEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDN--PQKYKHFIKSCNMH-GDGGVG-SIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~--~~~w~p~v~s~~~~-G~g~vG-~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ...++.+++||+++|++++....  |+..|..|++++++ |+|++| +||.|+|..|++.+.+|||++.+|+++++++|+
T Consensus         6 ~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~y~   85 (151)
T PF00407_consen    6 LEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTITYT   85 (151)
T ss_dssp             EEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEEEE
Confidence            45677899999999999998554  89999999999998 998877 999999999888889999999999999999999


Q ss_pred             EEeccccCCCeeeEE---EEEEecCCCceEEEEE
Q 046697          114 VVGGEHRLNNYRSVT---SVNEFQKGGEIYTIVT  144 (187)
Q Consensus       114 vveg~~p~~~y~a~~---~v~~~~~~g~~~t~~~  144 (187)
                      ++||++ +..|.++.   ++++.+++|+.++|..
T Consensus        86 viEGd~-l~~~~~~~~~~~~~~~~~g~~v~k~t~  118 (151)
T PF00407_consen   86 VIEGDV-LGDYKSFKSTIQKIPKGDGGCVVKWTI  118 (151)
T ss_dssp             EEEETT-GTTTEEEEEEEEEEEETTSCEEEEEEE
T ss_pred             EEeccc-cccEEEEEEEEEecCCCCCceEEEEEE
Confidence            999997 55555544   4444443445444433

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.73  E-value=1.1e-15  Score=113.81  Aligned_cols=139  Identities=20%  Similarity=0.213  Sum_probs=110.3

Q ss_pred             ceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      |++..++++|+||+++||++++|+.+...|.|.+.++++.+.+++|..+.++.....   .+.+++..+|+.++.+.|++
T Consensus         1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~i~~~~~~~~~~~~~~   77 (139)
T PF10604_consen    1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVAGRG---TVREEITEYDPEPRRITWRF   77 (139)
T ss_dssp             -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEECSCS---EEEEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEecccc---ceeEEEEEecCCCcEEEEEE
Confidence            467788999999999999999999998889999999998853335666777654323   79999999998789999999


Q ss_pred             EeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          115 VGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       115 veg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      .  ..|+.++...+.+.+.+ +|+.++|...+.. ..+.......++.++...++..|++||+.+|
T Consensus        78 ~--~~~~~~~~~~~~~~~~~-~gt~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E  139 (139)
T PF10604_consen   78 V--PSGFTNGTGRWRFEPVG-DGTRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAAE  139 (139)
T ss_dssp             E--SSSSCEEEEEEEEEEET-TTEEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             E--ecceeEEEEEEEEEEcC-CCEEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence            7  44577889999999986 5688887766533 2233444566888899999999999999987

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.73  E-value=6.7e-16  Score=114.93  Aligned_cols=137  Identities=34%  Similarity=0.517  Sum_probs=113.0

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      ...+++|+||+++||+++.|+.+...|.|.+.++++. +..++|+++.+++..|.   .+++++.++|+.+++++|++.+
T Consensus         3 i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g~---~~~~~i~~~~~~~~~i~~~~~~   79 (140)
T cd07821           3 VTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDGG---TVRERLLALDDAERRYSYRIVE   79 (140)
T ss_pred             EEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCCC---EEEEEehhcCccCCEEEEEecC
Confidence            3467899999999999999999988999999999998 43358999999988764   7899999999877899999999


Q ss_pred             ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      ++.++.++.+.+.+.+.+++++.++|...+   +++.+........++...++.+|++|++.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~  140 (140)
T cd07821          80 GPLPVKNYVATIRVTPEGDGGTRVTWTAEF---DPPEGLTDELARAFLTGVYRAGLAALKAALE  140 (140)
T ss_pred             CCCCcccceEEEEEEECCCCccEEEEEEEE---ecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence            866788899999998886556777776553   3333344567888899999999999999875

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.49  E-value=2.9e-12  Score=96.80  Aligned_cols=133  Identities=16%  Similarity=0.229  Sum_probs=98.1

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeE-------EEEEEecCCCcceeeEEEEEEeCCCCeEE
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSI-------REVTVVSGLPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~v-------R~lt~~~g~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      .++.|+||+++||+++.|+++...|.|.+.+|++. +.+ .+..       +.+...-.   ..+..++.+.++.+++++
T Consensus         3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~i~   78 (144)
T cd08866           3 ARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFFKFE---ARVVLELREREEFPRELD   78 (144)
T ss_pred             EEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEeeeee---EEEEEEEEEecCCCceEE
Confidence            46799999999999999999977999999999987 432 2221       11111011   144566777776679999


Q ss_pred             EEEEeccccCCCeeeEEEEEEecC-CCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          112 FRVVGGEHRLNNYRSVTSVNEFQK-GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       112 Y~vveg~~p~~~y~a~~~v~~~~~-~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      |++++|+  +..+.++..+.+.++ +++.++|..+   +++..+.....+..+++..+...|++|++.+|+
T Consensus        79 ~~~~~g~--~~~~~g~w~~~~~~~~~~t~v~~~~~---~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~  144 (144)
T cd08866          79 FEMVEGD--FKRFEGSWRLEPLADGGGTLLTYEVE---VKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES  144 (144)
T ss_pred             EEEcCCc--hhceEEEEEEEECCCCCeEEEEEEEE---EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999885  578999999999875 4566666544   344445556788888899999999999998874

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.47  E-value=6.1e-12  Score=93.28  Aligned_cols=137  Identities=14%  Similarity=0.065  Sum_probs=99.2

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecC--CCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG--DGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G--~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      ..++.|+||+++||+++.||.+...|.|.+.+++..+  ..++|+...+.+..++..-.+.++++.+|+ ++.++|....
T Consensus         2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~~~~~   80 (140)
T cd08865           2 EESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVFRGSS   80 (140)
T ss_pred             ceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEEEecC
Confidence            3567999999999999999999889999999988872  245788888776543222256899999985 5899999876


Q ss_pred             ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      +++   .+..+..+.+.+ +|+.++|..++.. ..+........+..+...++..|++||+.+|.
T Consensus        81 ~~~---~~~~~~~~~~~~-~~t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  140 (140)
T cd08865          81 GPF---PYEDTYTFEPVG-GGTRVRYTAELEP-GGFARLLDPLMAPAFRRRARAALENLKALLEA  140 (140)
T ss_pred             CCc---ceEEEEEEEEcC-CceEEEEEEEEcc-chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence            633   467888887775 5677776655321 11222223456677777888899999998874

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.46  E-value=8.9e-12  Score=92.94  Aligned_cols=135  Identities=16%  Similarity=0.040  Sum_probs=98.5

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCC-CCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDG-GVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g-~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      ...++.|+||+++||+++.|+.+...|.|.+.+++..+++ +.|+..+++...+.   .+..++.++++ +++++|+...
T Consensus         3 ~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~i~~~~p-~~~~~~~~~~   78 (138)
T cd08862           3 FEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGLV---RSTFTVTELRP-GHSFTWTGPA   78 (138)
T ss_pred             EEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCCC---ceEEEEEEecC-CCEEEEEecC
Confidence            3567899999999999999999988999999999998544 67876666654333   67888999986 4678887654


Q ss_pred             ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      .   ...+..+..+.+.+++++.+++.+.+..  +........+...++..++..|++||+.+|.
T Consensus        79 ~---~~~~~~~~~~~~~~~~~t~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  138 (138)
T cd08862          79 P---GISAVHRHEFEAKPDGGVRVTTSESLSG--PLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ  138 (138)
T ss_pred             C---CEEEEEEEEEEEcCCCcEEEEEEEEeec--chHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence            2   2344566666666545677777665421  1222334567888888999999999998873

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.43  E-value=9.5e-12  Score=93.76  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=99.4

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEe-cCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVV-SGLPASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~-~g~~~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      ..+++|+||+++||+++.||.+...|+|. ..++.. +.++...++.+... .|..  .-.+....+|+..+++.|..++
T Consensus         2 ~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~~~~   78 (142)
T cd08861           2 EHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV--HTWTSRRVLDPEGRRIVFRQEE   78 (142)
T ss_pred             eEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE--EEEEEEEEEcCCCCEEEEEEee
Confidence            35779999999999999999995569997 455443 32211234544444 2321  2224455678878999999998


Q ss_pred             ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      ++.++..+.+...+.+.+++++.++|...+. ...+.++....+.+.+...+...|.+||+.+|+
T Consensus        79 ~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  142 (142)
T cd08861          79 PPPPVASMSGEWRFEPLGGGGTRVTLRHDFT-LGIDSPEAVPWIRRALDRNSRAELAALRAAAER  142 (142)
T ss_pred             CCCChhhheeEEEEEECCCCcEEEEEEEEEE-ECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence            6556789999999999865567888776642 333445677788888888889999999999884

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.35  E-value=1.3e-10  Score=86.71  Aligned_cols=134  Identities=13%  Similarity=0.015  Sum_probs=89.1

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-C-CCCCCeEEEEEEecCCCcceeeEEEEEEeC-CCCeEEEE
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-G-DGGVGSIREVTVVSGLPASTSTERLEILDD-EKHILSFR  113 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G-~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~-~~~~~sY~  113 (187)
                      +.+.++.|+||+++||+++.|+.+...|.|.+.+++.. + +++.+...++++..++   ...+-+..++. ..++++|+
T Consensus         3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~   79 (140)
T cd07819           3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYG---IKDTYALEYTWDGAGSVSWT   79 (140)
T ss_pred             eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeee---EEEEEEEEEEEcCCCcEEEE
Confidence            45677899999999999999999988999999999985 3 3333333345554432   11122222322 26789999


Q ss_pred             EEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046697          114 VVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVV  178 (187)
Q Consensus       114 vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~  178 (187)
                      ..++.. ...+.+...+.+.+ +|+.++|..++   ++.-+........+.+.+....+++|++.
T Consensus        80 ~~~~~~-~~~~~~~~~~~~~~-~~t~vt~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  139 (140)
T cd07819          80 LVEGEG-NRSQEGSYTLTPKG-DGTRVTFDLTV---ELTVPLPGFLKRKAEPLVLDEALKGLKKR  139 (140)
T ss_pred             Eecccc-eeEEEEEEEEEECC-CCEEEEEEEEE---EecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence            998863 67788888888876 46777776543   32223445555556666666667777654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.33  E-value=2.4e-10  Score=84.92  Aligned_cols=139  Identities=13%  Similarity=0.076  Sum_probs=90.5

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCC-CcceeeEEEEEEeCCCCeEEEEEEe
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGL-PASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~-~~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      ...+++|+||+++||+++.|+.+...|.+.+..++... .++|....+++..+. ....+.+++.++|+ ++++.|+...
T Consensus         2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~~~   79 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS-LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAWRGGL   79 (141)
T ss_pred             eEEEEEecCCHHHHHHHHhccccccccChhheeEeccc-cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEEEecC
Confidence            35678999999999999999999878988876665531 346777777765421 22367888999987 5899999887


Q ss_pred             ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      ++........+..+.+.+++++.+++...+....  ...........+...++..++.||+.+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~E  141 (141)
T cd07822          80 PFPGLLDGEHSFELEPLGDGGTRFVHRETFSGLL--APLVLLGLGRDLRAGFEAMNEALKARAE  141 (141)
T ss_pred             CCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEEE--hHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence            7653334556677777644667777765433221  1111223344445555555666665543

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.29  E-value=4.5e-10  Score=85.39  Aligned_cols=139  Identities=14%  Similarity=0.100  Sum_probs=96.2

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCccccccceee---Ee--c-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCe
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSC---NM--H-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHI  109 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~---~~--~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~  109 (187)
                      .+...+++|++|+++||+++.|+.+...|.|.+..+   ..  . +..++|+...++...+.+  ....++.++++ +++
T Consensus         2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~--~~~~~v~~~~p-~~~   78 (150)
T cd07818           2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVG--EGEMEITESVP-NER   78 (150)
T ss_pred             eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCccc--ceEEEEEecCC-CcE
Confidence            456788899999999999999999976898865442   22  2 234578877676554211  34567788876 688


Q ss_pred             EEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          110 LSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEG----NTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       110 ~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~----~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      +.|++..+++....+..++.+.+.+ +|+.++|...+   +.+.+    .........++..++.+|++||+.+|+
T Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~-~gT~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  150 (150)
T cd07818          79 IEYELRFIKPFEATNDVEFTLEPVG-GGTKVTWGMSG---ELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK  150 (150)
T ss_pred             EEEEEEecCCccccceEEEEEEEcC-CceEEEEEEEe---cCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999986433123777888888884 67888876543   33322    222445667777788889999999885

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.23  E-value=3.5e-10  Score=85.21  Aligned_cols=135  Identities=11%  Similarity=0.066  Sum_probs=96.4

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccc
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEH  119 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~  119 (187)
                      .+++|+||++.||+++.|+.+...|.|.+.++++.+.++.+...+++++-++-...+..++. +++ ++++++..++|  
T Consensus         3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~g--   78 (138)
T cd07813           3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGGIRESFTSRVT-LVP-PESIEAELVDG--   78 (138)
T ss_pred             EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEecCC--
Confidence            46799999999999999999977999999999998332234444555553321123445544 666 67899999988  


Q ss_pred             cCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          120 RLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       120 p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      ++..+.+...+.|.+++++.+++...   +++..+.....+..+++...+..|+++++.+++
T Consensus        79 ~~~~~~g~w~~~p~~~~~T~v~~~~~---~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~  137 (138)
T cd07813          79 PFKHLEGEWRFKPLGENACKVEFDLE---FEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ  137 (138)
T ss_pred             ChhhceeEEEEEECCCCCEEEEEEEE---EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            36789999999998756677776544   344444444566677777777788888877654

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.22  E-value=7.1e-10  Score=82.54  Aligned_cols=135  Identities=13%  Similarity=0.117  Sum_probs=90.2

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG  117 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg  117 (187)
                      ..+++|+||+++||+++.|+.+...|.+.+..+... ..|  |+.+.+....++..-.+..++.++|+ ++++.|+...+
T Consensus         3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~-~~~i~~~~~~~   79 (139)
T cd07814           3 TIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEP-PRRLVFTWAFS   79 (139)
T ss_pred             EEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcC-CCeEEEEeccc
Confidence            467899999999999999999966776653333333 223  67665544332212257889999986 48899999877


Q ss_pred             cc-cCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          118 EH-RLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       118 ~~-p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      +. +.......+.+.+.+ +++.+++.......   ... .......+...+...|+.||+.+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~lk~~~E~  139 (139)
T cd07814          80 DETPGPETTVTVTLEETG-GGTRLTLTHSGFPE---EDA-EQEAREGMEEGWTGTLDRLKALLEK  139 (139)
T ss_pred             CCCCCCceEEEEEEEECC-CCEEEEEEEEccCh---HhH-HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence            54 345566777777775 66777776543221   111 3344555566777889999999884

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.20  E-value=1.1e-09  Score=81.56  Aligned_cols=132  Identities=15%  Similarity=0.185  Sum_probs=90.2

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEecc
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE  118 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~  118 (187)
                      ..+++|+||+++||+++.|+.+.+.|.|.+.++++.+.+  +....+.+..|.. .....++..+++ ++.+.|....|.
T Consensus         3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~~~~~~~   78 (139)
T cd07817           3 EKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT--RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAWRSVEGA   78 (139)
T ss_pred             eEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC--ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEEEECCCC
Confidence            456799999999999999999988999999999887321  2222233332332 245566666655 567999987764


Q ss_pred             ccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          119 HRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNT----VEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       119 ~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~----~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      +   .+.++..+.+.+++++.+++...+   +++.+..    ......+++..++..|++||+.+|
T Consensus        79 ~---~~~~~~~f~~~~~~~T~vt~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE  138 (139)
T cd07817          79 D---PNAGSVRFRPAPGRGTRVTLTIEY---EPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE  138 (139)
T ss_pred             C---CcceEEEEEECCCCCeEEEEEEEE---ECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence            3   566777777765446777766543   3333222    234566677778889999999887

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.15  E-value=5.2e-09  Score=80.77  Aligned_cols=138  Identities=14%  Similarity=0.049  Sum_probs=95.1

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEec--CCCCCCeEEEEEEe--cCC-CcceeeEEEEEEeCCCCeEEEE
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH--GDGGVGSIREVTVV--SGL-PASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~--G~g~vG~vR~lt~~--~g~-~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ..+++|++|++.||+++.|+.+-..|.|.+..+++.  |.++.|  .++++.  .++ ..++..++  .+|+..+++.+.
T Consensus         4 ~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~--~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i~~~   79 (146)
T cd08860           4 DNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR--FRLTMHPDANGTVWSWVSER--TLDPVNRTVRAR   79 (146)
T ss_pred             eeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE--EEEEEEeccCCEEEEEEEEE--EecCCCcEEEEE
Confidence            457899999999999999999966899999999997  333334  334332  232 11222222  267777777774


Q ss_pred             EEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697          114 VVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASL  183 (187)
Q Consensus       114 vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~  183 (187)
                      -. ...|+....+.-.+.+.+ +|+.+++..++. +....++......+.++..+...|++||+.+|+.|
T Consensus        80 ~~-~~~p~~~m~~~W~f~~~~-~gT~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~  146 (146)
T cd08860          80 RV-ETGPFAYMNIRWEYTEVP-EGTRMRWVQDFE-MKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA  146 (146)
T ss_pred             Ee-cCCCcceeeeeEEEEECC-CCEEEEEEEEEE-ECCCCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence            12 223577888888888885 568888776643 22123555667788888899999999999999854

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.11  E-value=1e-08  Score=73.82  Aligned_cols=132  Identities=20%  Similarity=0.184  Sum_probs=89.1

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEec-C-CCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-G-DGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG  117 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G-~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg  117 (187)
                      .++.|++|+++||+++.|+.+...|.|.+.+++.. + .+..|....+.+..+. ......++..+++ +..++|.+..+
T Consensus         3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~~~~   80 (141)
T cd07812           3 ASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRVTGG   80 (141)
T ss_pred             EEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEEecC
Confidence            56799999999999999999977899999999887 3 2445666655554111 1257888888887 68999999987


Q ss_pred             cccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCC---CHHHHHHHHHHHHHHHHHHHHH
Q 046697          118 EHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGN---TVEDTKMFVDTVVKLNLQKLGV  177 (187)
Q Consensus       118 ~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~---~~~~~~~~~~~~~~~gL~~Lk~  177 (187)
                      +.+ ..+.....+.+.+++++.+++...+   ..+...   ....+..+++..+...++++++
T Consensus        81 ~~~-~~~~~~~~~~~~~~~~t~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T cd07812          81 GGG-VDGTGEWRLEPEGDGGTRVTYTVEY---DPPGPLLKVFALLLAGALKRELAALLRALKA  139 (141)
T ss_pred             CCC-cceeEEEEEEECCCCcEEEEEEEEE---ecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence            763 5677788887775336767765443   333322   2334444455454555555544

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.04  E-value=9.3e-09  Score=77.50  Aligned_cols=137  Identities=14%  Similarity=0.152  Sum_probs=83.2

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEe-cC--CCCCCeEEEEEEec-CCCcceeeEEEEEEeCCCCeEEEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNM-HG--DGGVGSIREVTVVS-GLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~-~G--~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      .++++.|+||+++||+++.|+.+...|.|....... .+  +-.+|...++.+.. |.+ ..+..++.++++ +++++|+
T Consensus         2 i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~l~~~   79 (144)
T cd07825           2 VSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEE-NRLIAWR   79 (144)
T ss_pred             eEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECC-CCEEEEE
Confidence            457889999999999999999997778764222222 22  23478877776654 333 256677888887 5789998


Q ss_pred             EEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHh
Q 046697          114 VVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVED--TKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       114 vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~--~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      ..-...+......++.+.+.+++++.+++...+   .... .....  .......-++..|+.|++.+|
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~---~g~~-~~~~~~~~~~~~~~g~~~~l~~L~~~~~  144 (144)
T cd07825          80 PGPAGQEPGGHRWRWELEPIGPGRTRVTETYDW---SAVT-DLKELLGFPAFPEVQLEASLDRLATLAE  144 (144)
T ss_pred             ccCCCCCCCceeEEEEEEECCCCcEEEEEEEec---cCCh-hhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence            652222234444556666665455777765442   2111 11111  112234455678888888775

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=98.95  E-value=3e-08  Score=74.09  Aligned_cols=137  Identities=14%  Similarity=0.047  Sum_probs=86.5

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCC--cceeeEEEEEEeCCCCeEEEEEEe
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLP--ASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~--~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      ..+..|++|+++||+++.|+.+...|.|.+.+++..+++....  .+++..|..  .-...-++.++|+ ++++.+....
T Consensus         4 ~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   80 (144)
T cd05018           4 SGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEA--TVKLKVGPVKGTFKGKVELSDLDP-PESYTITGEG   80 (144)
T ss_pred             eeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEE--EEEEEEccEEEEEEEEEEEEecCC-CcEEEEEEEE
Confidence            4567999999999999999999778999999888764332111  122222210  0112455555554 3677777654


Q ss_pred             c-cccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          117 G-EHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       117 g-~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      . ......+..+..+.+. ++|+.++|..++.....-..+.......+++.++...+++||+++
T Consensus        81 ~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~  143 (144)
T cd05018          81 KGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI  143 (144)
T ss_pred             cCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2 2224578888888887 467888877654321111123455666677777777788888765

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.93  E-value=8.5e-08  Score=73.11  Aligned_cols=132  Identities=16%  Similarity=0.119  Sum_probs=81.8

Q ss_pred             EEEEcCChHHHHHHhhcCCCCccccccceeeEecC--C-CCCCeEEEEEEecCCCc-ceeeEEEEEEeCCCCeEEEEEEe
Q 046697           41 TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG--D-GGVGSIREVTVVSGLPA-STSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        41 ~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G--~-g~vG~vR~lt~~~g~~~-~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      +-.|+||+++||+++.|+.....|.|.+.+++..+  . .++|+.-++++....+. ..+.-++.++++ .+.++|.. +
T Consensus         6 ~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~-~   83 (146)
T cd07824           6 VWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLLEVRA-S   83 (146)
T ss_pred             EEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEEEEEE-E
Confidence            45899999999999999999778999999998863  2 34666544443221111 134556666655 67899985 5


Q ss_pred             ccccCCCeeeEEEEEEecCCCceEEEEEEEEeec----CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046697          117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVD----IPEGNTVEDTKMFVDTVVKLNLQKLGVV  178 (187)
Q Consensus       117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d----~p~~~~~~~~~~~~~~~~~~gL~~Lk~~  178 (187)
                      |++  . ......+.+.+ +|+.+++..+.....    .-.++.........+.+++..+++||+.
T Consensus        84 g~~--~-~~~~~~~~~~~-~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~  145 (146)
T cd07824          84 GDL--E-GVGRWTLAPDG-SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR  145 (146)
T ss_pred             Eee--e-EEEEEEEEEcC-CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence            654  2 35666766654 567777654432111    1123334445555555666666666664

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.82  E-value=1.5e-07  Score=71.78  Aligned_cols=138  Identities=15%  Similarity=0.099  Sum_probs=85.3

Q ss_pred             EEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCccee--eEEEEEEeCCCCeEEEEEEecc
Q 046697           41 TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTS--TERLEILDDEKHILSFRVVGGE  118 (187)
Q Consensus        41 ~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v--~ErL~~~D~~~~~~sY~vveg~  118 (187)
                      +.+|+||+++||+++.|+.+...|.|.+++.+..|++.  ..-+++++-|.-...+  +=++..++...+++++..-..+
T Consensus         4 ~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   81 (146)
T cd07823           4 EFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEATGKD   81 (146)
T ss_pred             eEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEEec
Confidence            56899999999999999999778999998888765331  2223444333210011  2256666646788887755321


Q ss_pred             ccC-C--CeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          119 HRL-N--NYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       119 ~p~-~--~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      ... .  ....++.+.+ .++|+.++|..+....-+-..+.....+...+.++...+++|++++|.
T Consensus        82 ~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e~  146 (146)
T cd07823          82 ARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLAA  146 (146)
T ss_pred             CCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            111 1  2334455555 335677887765322222233445567777888888889999998873

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=98.67  E-value=6.1e-07  Score=66.42  Aligned_cols=127  Identities=18%  Similarity=0.290  Sum_probs=81.9

Q ss_pred             EcCChHHHHHHhhcCCCCccccccceeeEecC-CCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccccCC
Q 046697           44 IDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG-DGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLN  122 (187)
Q Consensus        44 I~apae~VW~vi~df~~~~~w~p~v~s~~~~G-~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p~~  122 (187)
                      |+||+++||+++.|+.+...|.|.+.++++.. ++. +..-.++...++.......++....+ .. +.+..++|+  ++
T Consensus         1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~g~--~~   75 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPP-ER-IRFEQISGP--FK   75 (130)
T ss_dssp             ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECT-TT-EEEESSETT--EE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEe-ee-eeeeecCCC--ch
Confidence            78999999999999999778999999999983 332 32223444443322244566554433 33 788887775  58


Q ss_pred             CeeeEEEEEEecC--CCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046697          123 NYRSVTSVNEFQK--GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG  176 (187)
Q Consensus       123 ~y~a~~~v~~~~~--~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk  176 (187)
                      .+.+.-++.+.++  +|+...+.+. +..+++.+.....+..+++......+++|+
T Consensus        76 ~~~g~W~~~~~~~~~~g~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (130)
T PF03364_consen   76 SFEGSWRFEPLGGNEGGTRTRVTYD-YEVDPPGPLPGFLARQFFRRDLRQMLEAFR  130 (130)
T ss_dssp             EEEEEEEEEEETTECCEEEEEEEEE-EEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcEEEEEEEECCCCcCCCEEEEEEE-EEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence            8999999998863  1443344343 344555666566666666666666666553

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>PRK10724 hypothetical protein; Provisional

Probab=98.59  E-value=2.2e-06  Score=67.11  Aligned_cols=107  Identities=10%  Similarity=0.022  Sum_probs=76.2

Q ss_pred             ceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      +.....++.|++|++++|+++.|..+-..|.|.+.++++...++.+.+..++++-++-......|.. +++ ++++.+.+
T Consensus        14 M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~~~~f~srv~-~~~-~~~I~~~~   91 (158)
T PRK10724         14 MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGISKTFTTRNQ-LTS-NQSILMQL   91 (158)
T ss_pred             CCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCccEEEEEEEE-ecC-CCEEEEEe
Confidence            4455677899999999999999999966899999999887221123444555544432234445544 454 45899999


Q ss_pred             EeccccCCCeeeEEEEEEecCCCceEEEEEE
Q 046697          115 VGGEHRLNNYRSVTSVNEFQKGGEIYTIVTE  145 (187)
Q Consensus       115 veg~~p~~~y~a~~~v~~~~~~g~~~t~~~~  145 (187)
                      ++|+  ++.+.+.-.+.|.+++++.+++...
T Consensus        92 ~~Gp--F~~l~g~W~f~p~~~~~t~V~~~l~  120 (158)
T PRK10724         92 VDGP--FKKLIGGWKFTPLSQEACRIEFHLD  120 (158)
T ss_pred             cCCC--hhhccceEEEEECCCCCEEEEEEEE
Confidence            9983  7889999999898655677776554

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.53  E-value=8.2e-06  Score=61.44  Aligned_cols=101  Identities=19%  Similarity=0.164  Sum_probs=73.0

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEecC-C---CCCCeEEEEEEecCC-CcceeeEEEEEEeCCCCeEEEEE
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG-D---GGVGSIREVTVVSGL-PASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G-~---g~vG~vR~lt~~~g~-~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      .++.|+||+++||+.+.|+.+...|.|.+.++++.+ .   -.+|+.-++++..++ .. ..+-+++.+++ ++.+++..
T Consensus         3 ~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~p-~~~f~~~~   80 (137)
T cd07820           3 RSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVEP-PRRFVDEQ   80 (137)
T ss_pred             EEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEcC-CCeEEEEe
Confidence            567999999999999999999888999998998863 2   234677667666533 22 34566677775 57899998


Q ss_pred             EeccccCCCeeeEEEEEEecCCCceEEEEEE
Q 046697          115 VGGEHRLNNYRSVTSVNEFQKGGEIYTIVTE  145 (187)
Q Consensus       115 veg~~p~~~y~a~~~v~~~~~~g~~~t~~~~  145 (187)
                      +.|+  +.....+..+.+.+ +|+.+|....
T Consensus        81 ~~G~--~~~w~h~~~f~~~~-~gT~vt~~v~  108 (137)
T cd07820          81 VSGP--FRSWRHTHRFEAIG-GGTLMTDRVE  108 (137)
T ss_pred             ccCC--chhCEEEEEEEECC-CceEEEEEEE
Confidence            8875  45566666666665 4677776544

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.50  E-value=5.8e-06  Score=61.98  Aligned_cols=135  Identities=17%  Similarity=0.122  Sum_probs=76.5

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      ...++.|+||+++||+++.|+.....|.+... +... |.+..|   .+++.++. .....=++.++++ +++++|+...
T Consensus         3 i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g---~~~~~~~~-~~~~~~~i~~~~p-~~~l~~~~~~   76 (145)
T cd08898           3 IERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATG---EITYPGYE-HGVFPVTVVEVDP-PRRFSFRWHP   76 (145)
T ss_pred             eEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCccee---EEecCCCC-ccceEEEEEEeCC-CcEEEEEecC
Confidence            34678999999999999999999667766532 2232 332223   34443321 0145567888876 5889998754


Q ss_pred             cc----cc---CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          117 GE----HR---LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       117 g~----~p---~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      ..    .+   ......++.+.+.+ +|+.+++...  .+....+...+.....+..-....|+.|+++||.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~--~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~  145 (145)
T cd08898          77 PAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTES--GFDALPAERRAEAYRMNEGGWDEQLENLVAYVEA  145 (145)
T ss_pred             CCcccccccCCCCceEEEEEEEecC-CcEEEEEEEc--CCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence            33    11   12233455555553 5677776532  1111111111123334555566788899988873

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.47  E-value=6e-06  Score=63.95  Aligned_cols=128  Identities=15%  Similarity=0.068  Sum_probs=80.2

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEE
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVV  115 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vv  115 (187)
                      ....++.+|+||+++||+++.|+.+...|.+..   ..  +-.+|...++++.... .....-++.++|+ +++++|+..
T Consensus        11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~--~~~~G~~~~~~~~~~~-~~~~~~~v~e~~p-~~~l~~~~~   83 (157)
T cd08899          11 ATLRFERLLPAPIEDVWAALTDPERLARWFAPG---TG--DLRVGGRVEFVMDDEE-GPNATGTILACEP-PRLLAFTWG   83 (157)
T ss_pred             eEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---CC--CcccCceEEEEecCCC-CCccceEEEEEcC-CcEEEEEec
Confidence            456788999999999999999999976787622   11  2124444455554411 1256788888886 488898876


Q ss_pred             eccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          116 GGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       116 eg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      .++   .....++.+.+.+ +|+.+++.....    +..    .....+..-....|+.||+.+|+.
T Consensus        84 ~~~---~~~~~~~~l~~~~-~gT~v~~~~~~~----~~~----~~~~~~~~GW~~~L~~Lk~~~e~~  138 (157)
T cd08899          84 EGG---GESEVRFELAPEG-DGTRLTLTHRLL----DER----FGAGAVGAGWHLCLDVLEAALEGG  138 (157)
T ss_pred             CCC---CCceEEEEEEEcC-CCEEEEEEEecc----Cch----hhhhhhcccHHHHHHHHHHHHcCC
Confidence            544   2233444454443 567666554421    111    123344455667799999998864

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.40  E-value=2.2e-05  Score=59.33  Aligned_cols=131  Identities=15%  Similarity=0.131  Sum_probs=74.5

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccc-c---ceeeEec-CCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCCCeE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKH-F---IKSCNMH-GDGGVGSIREVTVV--SGLPASTSTERLEILDDEKHIL  110 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p-~---v~s~~~~-G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~~~~  110 (187)
                      ..++..|+||+++||+++.+-..++.|.+ .   ...+++. ..|  |..| +.+.  +|.. -...=++.++++ ++++
T Consensus         2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~G--G~~~-~~~~~~~g~~-~~~~g~v~e~~p-~~~l   76 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPG--GRWR-FVMHGPDGTD-YPNRIVFLEIEP-PERI   76 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCC--CEEE-EEEECCCCCE-ecceEEEEEEcC-CCEE
Confidence            35788999999999999999888666643 2   2223333 223  4433 3332  2321 122347888886 5899


Q ss_pred             EEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          111 SFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       111 sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      .|+...++.   ....++.+.+.+ +|+.+++...   +. +.+.....+...+.+-....|+.|++.+++
T Consensus        77 ~~t~~~~~~---~~~v~~~~~~~~-~gT~ltl~~~---~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~  139 (139)
T cd08894          77 VYDHGSGPP---RFRLTVTFEEQG-GKTRLTWRQV---FP-TAAERCEKIKFGAVEGNEQTLDRLAAYLAR  139 (139)
T ss_pred             EEEeccCCC---cEEEEEEEEECC-CCEEEEEEEE---cC-CHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence            998754421   233444555543 6677776542   11 111111122334455566778889888874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.37  E-value=2.2e-05  Score=58.07  Aligned_cols=130  Identities=15%  Similarity=0.033  Sum_probs=73.3

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEecc
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE  118 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~  118 (187)
                      ..++.|+||+++||+++.|......|.+...   ..++-.+|..=.+...+. ....+.=++.++++ +++++|+...+.
T Consensus         3 ~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~---~~~~~~~G~~~~~~~~~~-~~~~~~~~v~~~~~-~~~l~~~~~~~~   77 (136)
T cd08893           3 VYVTYIRATPEKVWQALTDPEFTRQYWGGTT---VESDWKVGSAFEYRRGDD-GTVDVEGEVLESDP-PRRLVHTWRAVW   77 (136)
T ss_pred             EEEEEecCCHHHHHHHHcCchhhhheecccc---cccCCcCCCeEEEEeCCC-cccccceEEEEecC-CCeEEEEEecCC
Confidence            4678999999999999999999666654421   122212333223444331 11135566777765 677887766433


Q ss_pred             cc----CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          119 HR----LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       119 ~p----~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      .+    .....-++.+.+.+ +++.+++...-    .+.+   ......+..-+...|+.||+.+|.
T Consensus        78 ~~~~~~~~~~~v~~~l~~~~-~~t~l~~~~~~----~~~~---~~~~~~~~~gw~~~l~~Lk~~~e~  136 (136)
T cd08893          78 DPEMAAEPPSRVTFEIEPVG-DVVKLTVTHDG----FPPG---SPTLEGVSGGWPAILSSLKTLLET  136 (136)
T ss_pred             CcccCCCCCEEEEEEEEecC-CcEEEEEEecC----CCCc---hhHHHhhhcCHHHHHHHHHHHhcC
Confidence            21    22344555555543 45555544321    1221   123334455566789999998874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.31  E-value=3.4e-05  Score=58.70  Aligned_cols=134  Identities=14%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccc-c---ceeeEec-CCCCCCeEEEEEEe-cCCCcceeeEEEEEEeCCCCeEEE
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKH-F---IKSCNMH-GDGGVGSIREVTVV-SGLPASTSTERLEILDDEKHILSF  112 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p-~---v~s~~~~-G~g~vG~vR~lt~~-~g~~~~~v~ErL~~~D~~~~~~sY  112 (187)
                      .++..|+||+++||+++.+-..+..|.+ .   +..+++. ..|  |..+ +.+. .++..-.+.=++.++|+ .+++.|
T Consensus         3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~G--G~~~-~~~~~~~g~~~~~~g~v~~i~p-~~~l~~   78 (146)
T cd08896           3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPG--GAFR-TVMRGPDGEEFPNPGCFLEVVP-GERLVF   78 (146)
T ss_pred             EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecC--cEEE-EEEECCCCCEecceEEEEEEeC-CCEEEE
Confidence            4778999999999999999888656643 2   3334443 333  4444 3342 22211123567888887 588887


Q ss_pred             EEE--eccccCCC-e-eeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          113 RVV--GGEHRLNN-Y-RSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       113 ~vv--eg~~p~~~-y-~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      +-.  ++..+... + ..++.+.+. ++|+.+++....   . .....+.....-+..=....|+.|+++++.
T Consensus        79 t~~~~~~~~~~~~~~~~v~~~~~~~-~~gT~Ltl~~~~---~-~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~  146 (146)
T cd08896          79 TDALTPGWRPAEKPFMTAIITFEDE-GGGTRYTARARH---W-TEADRKQHEEMGFHDGWGTAADQLAALAES  146 (146)
T ss_pred             EEeecCCcCCCCCCcEEEEEEEEec-CCcEEEEEEEEe---C-CHHHHHHHHHcCHHHHHHHHHHHHHHHHhC
Confidence            732  32222222 1 234444454 366777764321   1 111001111111234466788889888763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.17  E-value=0.00018  Score=54.39  Aligned_cols=132  Identities=13%  Similarity=0.066  Sum_probs=72.9

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCcccccc-----ceeeEec-CCCCCCeEEEEEEe-cCCCcceeeEEEEEEeCCCCeEE
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHF-----IKSCNMH-GDGGVGSIREVTVV-SGLPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~-----v~s~~~~-G~g~vG~vR~lt~~-~g~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      .++..++||+++||+++.|-..++.|.+.     +..+.+. -.|  |..+ +.+. .++......=++.++|+ ++++.
T Consensus         3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~G--g~~~-~~~~~~~g~~~~~~g~~~~~~p-~~~l~   78 (143)
T cd08900           3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVG--GREV-SRGGPKGGPEITVEARYHDIVP-DERIV   78 (143)
T ss_pred             EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCC--CEEE-EEEECCCCCEEeeeEEEEEecC-CceEE
Confidence            56789999999999999998886666532     2333333 222  4444 3343 22221234557778876 58887


Q ss_pred             EEEEe--ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          112 FRVVG--GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       112 Y~vve--g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      |+-..  ++.+.....-++.+.+.+ +|+.+++.......  ...   +. ...+..=....|+.|++.|++
T Consensus        79 ~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~--~~~---~~-~~~~~~GW~~~l~~L~~~l~~  143 (143)
T cd08900          79 YTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFL--DGD---DD-PAGREQGTAALLDNLAAELER  143 (143)
T ss_pred             EEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEecc--ccc---ch-hhhHHHHHHHHHHHHHHHHhC
Confidence            77542  222222223344444443 56777765442111  111   11 223334456678999988874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.17  E-value=3.8e-05  Score=58.50  Aligned_cols=133  Identities=16%  Similarity=0.137  Sum_probs=71.2

Q ss_pred             EEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCc--ceeeEEEEEEeCCCCeEEEEEEeccc
Q 046697           42 QRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPA--STSTERLEILDDEKHILSFRVVGGEH  119 (187)
Q Consensus        42 ~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~--~~v~ErL~~~D~~~~~~sY~vveg~~  119 (187)
                      .+|++|+++||+++.|...+..+.|.+++.+..|+.-.+   +++.+-|.-.  -..+=++..+|+.++. +..+-..+.
T Consensus         3 ~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~~~~~~---~~~v~vG~i~~~~~g~~~~~~~~~~~~~-~~~~~g~g~   78 (140)
T PF06240_consen    3 FEVPAPPEKVWAFLSDPENLARCIPGVESIEKVGDEYKG---KVKVKVGPIKGTFDGEVRITEIDPPESY-TLEFEGRGR   78 (140)
T ss_dssp             EEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEECTEEEE---EEEEESCCCEEEEEEEEEEEEEETTTEE-EEEEEEEEC
T ss_pred             EEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecCcEEEE---EEEEEeccEEEEEEEEEEEEEcCCCcce-EeeeeccCC
Confidence            589999999999999999988899999999887621011   1233333210  1234456667765444 344443332


Q ss_pred             cCCCee--eEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          120 RLNNYR--SVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       120 p~~~y~--a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                       .....  ..+.+...+++++.++|..+.-..-....+.........+.+++..+++|++.+
T Consensus        79 -~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l  139 (140)
T PF06240_consen   79 -GGGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL  139 (140)
T ss_dssp             -TCCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence             23333  333333333333666666553222112223344555556666666666666544

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.15  E-value=0.00022  Score=54.19  Aligned_cols=135  Identities=10%  Similarity=-0.026  Sum_probs=72.6

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccc----eeeEecCCCCCCeEEEEEEe-cCCCcceeeEEEEEEeCCCCeEEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFI----KSCNMHGDGGVGSIREVTVV-SGLPASTSTERLEILDDEKHILSF  112 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v----~s~~~~G~g~vG~vR~lt~~-~g~~~~~v~ErL~~~D~~~~~~sY  112 (187)
                      ..++..++||+++||+++.+-..++.|.+.-    ..+++.  -.+|..-++.+. .++....+.=++.++++ ++++.|
T Consensus         2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d--~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p-~~~l~~   78 (142)
T cd07826           2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECD--IRVGGSYRYVHRAPDGEEMGFHGVYHEVTP-PERIVQ   78 (142)
T ss_pred             EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEe--ccCCCEEEEEEECCCCCEecceEEEEEEcC-CCEEEE
Confidence            3578899999999999999988866665422    223332  113333334443 22221134556777876 577777


Q ss_pred             EEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          113 RVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       113 ~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      +-.-.+.+...-..++.+.+.+ +|+.+++...   +. .....++.....+..=...+|+.|++.|+
T Consensus        79 t~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~---~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          79 TEEFEGLPDGVALETVTFTELG-GRTRLTATSR---YP-SKEARDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             EeEecCCCCCceEEEEEEEECC-CCEEEEEEEE---eC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            7542222222223344444543 6677776422   11 11111112333444555677888887765

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.08  E-value=0.00021  Score=53.45  Aligned_cols=124  Identities=13%  Similarity=0.124  Sum_probs=72.2

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCcccccc-----ceeeEec-CCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCCCe
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHF-----IKSCNMH-GDGGVGSIREVTVV--SGLPASTSTERLEILDDEKHI  109 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~-----v~s~~~~-G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~~~  109 (187)
                      ..++..|+||+++||+++.|-..++.|...     +..++.. ..|  |..+ +.+.  +|.....+.=++.++++ +++
T Consensus         2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~G--G~~~-~~~~~~~g~~~~~~~g~~~ei~p-~~~   77 (133)
T cd08897           2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVG--GKFS-YRMEAKDGSMGFDFEGTYTEVEP-HKL   77 (133)
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcC--CEEE-EEEEcCCCCcccccceEEEEECC-CCE
Confidence            357789999999999999999887778432     2223333 223  4443 3332  23211134556777876 599


Q ss_pred             EEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          110 LSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       110 ~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      +.|+..++      ...++.+.+.+ +|+.++...     +..+..    ....+..=...+|+.|++.+|.
T Consensus        78 l~~~~~~~------~~v~~~l~~~~-~gT~l~l~~-----~~~~~~----~~~~~~~GW~~~l~~L~~~le~  133 (133)
T cd08897          78 IEYTMEDG------REVEVEFTEEG-DGTKVVETF-----DAENEN----PVEMQRQGWQAILDNFKKYVES  133 (133)
T ss_pred             EEEEcCCC------CEEEEEEEECC-CCEEEEEEE-----CCCCCC----cHHHHHHHHHHHHHHHHHHhhC
Confidence            99996432      23455555543 567776542     221111    1222334457789999998874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=98.08  E-value=5.6e-05  Score=58.42  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=61.7

Q ss_pred             EEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCccee--eEEEEEEeCCCCeEEEEEEecc
Q 046697           41 TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTS--TERLEILDDEKHILSFRVVGGE  118 (187)
Q Consensus        41 ~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v--~ErL~~~D~~~~~~sY~vveg~  118 (187)
                      +-.|++|+++||+++.|+.....+.|.|++++..|+.-.+.   ++++-|.--..+  +=++..+|+..++++-..-.|.
T Consensus         6 ~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~e~~~~---v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g~G~~   82 (146)
T COG3427           6 TFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGDEYTAK---VKLKIGPLKGTFSGRVRFVNVDEPPRSITINGSGGG   82 (146)
T ss_pred             eEEecCCHHHHHHHhcCHHHHHhhcCCcceeeecCCeEEEE---EEEeecceeEEEEEEEEEccccCCCcEEEEEeeccc
Confidence            45899999999999999999889999999999987622222   223323110123  4455666677777776666533


Q ss_pred             c-cCCCeeeEEEEEEecCCCceEEEEE
Q 046697          119 H-RLNNYRSVTSVNEFQKGGEIYTIVT  144 (187)
Q Consensus       119 ~-p~~~y~a~~~v~~~~~~g~~~t~~~  144 (187)
                      . ...+...-+.+.+.+ +++.++|..
T Consensus        83 ~~g~~~~~~~v~l~~~g-~gt~v~w~~  108 (146)
T COG3427          83 AAGFADGTVDVQLEPSG-EGTRVNWFA  108 (146)
T ss_pred             ccceeeeeeEEEEEEcC-CCcEEEEEE
Confidence            3 122333334444443 346666543

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=97.97  E-value=0.0004  Score=55.38  Aligned_cols=147  Identities=12%  Similarity=0.147  Sum_probs=91.1

Q ss_pred             hhhccCCCCCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEec--CCCcceeeEEEE
Q 046697           24 ERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVS--GLPASTSTERLE  101 (187)
Q Consensus        24 ~~~~~~~~~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~--g~~~~~v~ErL~  101 (187)
                      ..+..-+.-.+-...+++++|++|++.||++.+|+.++..|+..+.|+++.-+..    -+|+...  |..+++ .-+|+
T Consensus        58 ~~a~~~~g~~~~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr----SrW~~~ap~g~~v~W-ea~it  132 (217)
T COG5637          58 ATALKIEGMAKPIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR----SRWKANAPLGLEVEW-EAEIT  132 (217)
T ss_pred             HHHHHhhcccCceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc----cceeEcCCCCceEEE-eehhh
Confidence            3344444444445566788999999999999999999889999999999974431    3455543  333223 34444


Q ss_pred             EEeCCCCeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHH----HHHHHHHHHHHHH
Q 046697          102 ILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFV----DTVVKLNLQKLGV  177 (187)
Q Consensus       102 ~~D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~----~~~~~~gL~~Lk~  177 (187)
                       =|..+.++.|+=++|.- + .-++.++.-+.+++.+.+....   ...+|.+.......+++    +.-+..-|+..|.
T Consensus       133 -~d~~~e~I~W~Sl~Ga~-v-~NsG~VrF~~~pg~~t~V~v~l---sY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~  206 (217)
T COG5637         133 -KDIPGERIQWESLPGAR-V-ENSGAVRFYDAPGDSTEVKVTL---SYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKE  206 (217)
T ss_pred             -ccCCCcEEeeecCCCCc-C-CCCccEEeeeCCCCceEEEEEE---EecCCccHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence             45678999999999853 2 2456666666654433443332   22455554443333332    2334456677777


Q ss_pred             HHhh
Q 046697          178 VSMA  181 (187)
Q Consensus       178 ~le~  181 (187)
                      ..|.
T Consensus       207 ~~e~  210 (217)
T COG5637         207 YQEN  210 (217)
T ss_pred             HHHc
Confidence            7665

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=97.97  E-value=0.00073  Score=50.29  Aligned_cols=122  Identities=10%  Similarity=0.099  Sum_probs=70.8

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEecc
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE  118 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~  118 (187)
                      .++..|+||+++||+++.+-..++.|.....+.+.. .|  |..+   +.+|    .+.=++.++++ +++++|+-.-.+
T Consensus         3 ~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~-~G--G~~~---~~~g----~~~g~~~~i~p-~~~l~~~w~~~~   71 (126)
T cd08892           3 SLTETFQVPAEELYEALTDEERVQAFTRSPAKVDAK-VG--GKFS---LFGG----NITGEFVELVP-GKKIVQKWRFKS   71 (126)
T ss_pred             EEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecCC-CC--CEEE---EeCC----ceEEEEEEEcC-CCEEEEEEEcCC
Confidence            467899999999999999988877786543333333 22  4443   3344    24456777876 577777654322


Q ss_pred             ccCCC-eeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          119 HRLNN-YRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       119 ~p~~~-y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      .+... -..++.+.+. ++|+.+++....    .+.+    .....-.+.-...|+.|++.|+
T Consensus        72 ~~~~~~s~v~~~l~~~-~~gT~ltl~~~g----~~~~----~~~~~~~GW~~~~~~~l~~~~~  125 (126)
T cd08892          72 WPEGHYSTVTLTFTEK-DDETELKLTQTG----VPAG----EEERTREGWERYYFESIKQTFG  125 (126)
T ss_pred             CCCCCcEEEEEEEEEC-CCCEEEEEEEEC----CCCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence            22211 2233333443 356777765432    2222    2223344544557889998876

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=97.94  E-value=0.0007  Score=51.60  Aligned_cols=135  Identities=10%  Similarity=0.012  Sum_probs=69.2

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCcccccc-------ceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeE
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHF-------IKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHIL  110 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~-------v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~  110 (187)
                      ..++.|+||+++||+++.+ ..-+.|.|.       ...|++. -.|  |..+ +...+|..  ...=++.++++ .+++
T Consensus         3 ~~~~~i~Ap~e~Vw~a~t~-~l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~~g~~--~~~g~v~~v~p-~~~l   75 (149)
T cd08891           3 RKSVTVPAPPERAFEVFTE-GFGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGEDGTE--CEWGTVLAWEP-PSRL   75 (149)
T ss_pred             EEEEEecCCHHHHHHHHHh-chhhccCCCcccccCCCccEEEcccCC--cEEE-EecCCCcE--eceEEEEEEcC-CCEE
Confidence            4678999999999999999 323344443       2445554 223  4443 22223331  23457788876 5888


Q ss_pred             EEEEE-ec-cccCCCeeeE--EEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          111 SFRVV-GG-EHRLNNYRSV--TSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       111 sY~vv-eg-~~p~~~y~a~--~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      +|+-. .. ..+...+.+.  +.+.+.+++|+.+++........ +++..+.........=....|+.|++.+|+
T Consensus        76 ~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~-~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~  149 (149)
T cd08891          76 VFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERH-GDGWEAAAMRMGYDGGWPLLLERYAAAAEK  149 (149)
T ss_pred             EEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEeccccc-CcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence            88754 21 1112223333  33333321567777654422111 110011222222333345678889988875

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.91  E-value=0.0019  Score=48.99  Aligned_cols=130  Identities=18%  Similarity=0.170  Sum_probs=69.8

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccc-c-c--eeeEec-CCCCCCeEEE-EEEec------CCCcceeeEEEEEEeC
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKH-F-I--KSCNMH-GDGGVGSIRE-VTVVS------GLPASTSTERLEILDD  105 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p-~-v--~s~~~~-G~g~vG~vR~-lt~~~------g~~~~~v~ErL~~~D~  105 (187)
                      ..++..|+||+++||+++.|...+..|.+ . +  ..+.+. ..|  |..+. +++.+      .+....+.=++.++++
T Consensus         2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~G--G~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p   79 (146)
T cd08895           2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREG--GGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVP   79 (146)
T ss_pred             EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccC--CeEEEEEEcCCccccccCCcEeeeEEEEEEEcC
Confidence            45788999999999999999988656543 2 1  112232 223  33332 22222      1111134456888877


Q ss_pred             CCCeEEEEEE--eccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          106 EKHILSFRVV--GGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       106 ~~~~~sY~vv--eg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                       +++++|+..  ++..+ ....-++.+.+.+ +++.+++....    .+...    .......=....|+.|++++|
T Consensus        80 -~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~-~~T~lt~~~~~----~~~~~----~~~~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          80 -NERIVYTDVFDDPSLS-GEMTMTWTLSPVS-GGTDVTIVQSG----IPDGI----PPEDCELGWQESLANLAALVE  145 (146)
T ss_pred             -CCEEEEEEEecCCCCC-ceEEEEEEEEecC-CCEEEEEEEeC----CCchh----hhhHHHHHHHHHHHHHHHHhc
Confidence             578888753  22222 2233444444443 55777765431    12221    122333344566888888776

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=97.90  E-value=0.002  Score=51.14  Aligned_cols=140  Identities=9%  Similarity=0.004  Sum_probs=78.8

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEecCCCc---ceeeEEEEEEeCCCCeEEE
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVSGLPA---STSTERLEILDDEKHILSF  112 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~g~~~---~~v~ErL~~~D~~~~~~sY  112 (187)
                      ..-.+..|++|+++||+++.|.+.-+.|-|.+.++++... +..-.+-.+.+....+.   ..+..+-...+..+..+..
T Consensus        42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i  121 (195)
T cd08876          42 EFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVTI  121 (195)
T ss_pred             EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEEE
Confidence            4445678999999999999999997799999999988722 21122223333322211   1122211222222344444


Q ss_pred             EEEeccc--c-------CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          113 RVVGGEH--R-------LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       113 ~vveg~~--p-------~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      .+.+.+.  |       +..+.+...+.+.+++++.+++..   ..++...........+........+++|++++
T Consensus       122 ~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~---~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~  194 (195)
T cd08876         122 TLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQA---YADPGGSIPGWLANAFAKDAPYNTLENLRKQL  194 (195)
T ss_pred             EeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEE---EeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4443322  3       344555566667654446666544   34554455555555566666666677777653

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=97.81  E-value=0.00057  Score=49.64  Aligned_cols=122  Identities=16%  Similarity=0.150  Sum_probs=66.2

Q ss_pred             cCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEecccc-CC
Q 046697           45 DAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHR-LN  122 (187)
Q Consensus        45 ~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p-~~  122 (187)
                      |||+++||+++.+...++.|. .....++. ..|  |..+... .+|. .-...=++.++++ ++++.|+.--++.+ ..
T Consensus         1 ~ap~e~Vw~a~t~~~~~~~W~-~~~~~~~~~~~G--g~~~~~~-~~g~-~~~~~~~v~~~~p-~~~i~~~~~~~~~~~~~   74 (124)
T PF08327_consen    1 DAPPERVWEALTDPEGLAQWF-TTSEAEMDFRPG--GSFRFMD-PDGG-EFGFDGTVLEVEP-PERIVFTWRMPDDPDGP   74 (124)
T ss_dssp             SSSHHHHHHHHHSHHHHHHHS-EEEEEEEECSTT--EEEEEEE-TTSE-EEEEEEEEEEEET-TTEEEEEEEEETSSSCE
T ss_pred             CcCHHHHHHHHCCHhHHhhcc-CCCcceeeeecC--CEEEEEe-cCCC-CceeeEEEEEEeC-CEEEEEEEEccCCCCCC
Confidence            699999999999999988891 12222232 223  4444312 3332 1123334888876 57898886544332 11


Q ss_pred             CeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          123 NYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       123 ~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      ...-++.+.+ .++++.++....  ...  .   .......+..-....|+.|++.||
T Consensus        75 ~~~v~~~~~~-~~~~T~l~~~~~--~~~--~---~~~~~~~~~~gw~~~l~~L~~~lE  124 (124)
T PF08327_consen   75 ESRVTFEFEE-EGGGTRLTLTHS--GFP--D---DDEEEEGMEQGWEQMLDRLKAYLE  124 (124)
T ss_dssp             EEEEEEEEEE-ETTEEEEEEEEE--EEH--S---HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEE-cCCcEEEEEEEE--cCC--c---cHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2233334444 335566665542  111  1   111222145556677889998876

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.81  E-value=0.0011  Score=49.79  Aligned_cols=128  Identities=13%  Similarity=0.025  Sum_probs=70.1

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEecc
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE  118 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~  118 (187)
                      ..++.|+||+++||+++.+-..++.|.+.-...++. .|  |.+ .+.|...++  .+.=++.++++ .+++.|+...++
T Consensus         3 ~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~-~G--g~~-~~~~~~~~~--~~~g~~~~~~p-~~~l~~~w~~~~   75 (136)
T cd08901           3 KTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRLE-EG--KTV-TWDWEMYGA--SVPVNVLEIEP-NKRIVIEWGDPG   75 (136)
T ss_pred             eEEEEecCCHHHHHHHhcCHHHhccccccCCCcccc-CC--CEE-EEEEEccCC--ceEEEEEEEcC-CCEEEEEecCCC
Confidence            467799999999999999998876653222233332 12  333 355543222  23446777876 588988865431


Q ss_pred             ccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 046697          119 HRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMF--VDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       119 ~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~--~~~~~~~gL~~Lk~~le~  181 (187)
                      .   .-.-++.+.+.+++|+.++....    ..+... .+.....  +..=....|+.|+..+|+
T Consensus        76 ~---~s~v~~~l~~~~~ggT~ltl~~~----~~~~~~-~~~~~~~~~~~~GW~~~L~~L~~~le~  132 (136)
T cd08901          76 E---PTTVEWTFEELDDGRTFVTITES----GFPGTD-DEGLKQALGSTEGWTLVLAGLKAYLEH  132 (136)
T ss_pred             C---CEEEEEEEEECCCCcEEEEEEEC----CCCCCc-HHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            1   12223334443324576765432    122221 1111111  223345678999998875

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.0069  Score=46.67  Aligned_cols=97  Identities=11%  Similarity=0.028  Sum_probs=56.5

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      ....++..|++|+++||+++.|-..++.|.. -..++.... | .+....+...+|. ...+.-+..++++ ++++.|+-
T Consensus         8 ~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~g-g~~~~~~~~~~g~-~~~~~~~~~~v~p-~~rIv~tw   83 (149)
T COG3832           8 RTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTG-GGERVRFRGPDGP-VHSFEGEYLEVVP-PERIVFTW   83 (149)
T ss_pred             ceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecC-CceEEeeecCCCC-eeecceEEEEEcC-CcEEEEEe
Confidence            3456788999999999999999999767765 222222211 1 1222234344442 1245667788876 57766665


Q ss_pred             Ee--ccccCCCeeeEEEEEEecCC
Q 046697          115 VG--GEHRLNNYRSVTSVNEFQKG  136 (187)
Q Consensus       115 ve--g~~p~~~y~a~~~v~~~~~~  136 (187)
                      .-  +..|...-..++.+++...+
T Consensus        84 ~~~~~~~~~~~~~v~~~l~~~~~g  107 (149)
T COG3832          84 DFDEDGEPFLKSLVTITLTPEDDG  107 (149)
T ss_pred             ccCCCCCcccCceEEEEEEEecCC
Confidence            44  34333344455555665433

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=96.69  E-value=0.069  Score=41.47  Aligned_cols=59  Identities=25%  Similarity=0.339  Sum_probs=41.1

Q ss_pred             hHHHHHHhhcC-CCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEE
Q 046697           48 AHVVWPFVRRF-DNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSF  112 (187)
Q Consensus        48 ae~VW~vi~df-~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY  112 (187)
                      .++||.-+... .+|..+.|.|.+|++..+.+..-.|.++|+..    .++|++... + .+++.|
T Consensus        20 r~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~fg~~----~v~E~v~~~-~-~~~V~f   79 (149)
T PF08982_consen   20 REQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTFGGA----TVRERVTLY-P-PERVDF   79 (149)
T ss_dssp             HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEETTE----EEEEEEEEE-T-TTEEEE
T ss_pred             HHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEECCc----EEEEEEEEe-C-CcEEEE
Confidence            46899987754 45888999999999984333578899999433    799998754 3 478888

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=96.53  E-value=0.059  Score=40.50  Aligned_cols=90  Identities=9%  Similarity=0.103  Sum_probs=48.3

Q ss_pred             EcCChHHHHHHhhcCCCCccc-cccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccccC
Q 046697           44 IDAPAHVVWPFVRRFDNPQKY-KHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL  121 (187)
Q Consensus        44 I~apae~VW~vi~df~~~~~w-~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p~  121 (187)
                      ++||+++||+++.|-..++.| .+.  .+++. -.|  |..+.+   .+    .+.=+..++|+ ++++.|+---.+.+-
T Consensus         1 f~ap~e~Vw~A~Tdp~~l~~w~~~~--~~~~d~~~G--G~f~~~---~~----~~~G~~~ev~p-p~rlv~tw~~~~~~~   68 (132)
T PTZ00220          1 FYVPPEVLYNAFLDAYTLTRLSLGS--PAEMDAKVG--GKFSLF---NG----SVEGEFTELEK-PKKIVQKWRFRDWEE   68 (132)
T ss_pred             CCCCHHHHHHHHcCHHHHHHHhcCC--CccccCCcC--CEEEEe---cC----ceEEEEEEEcC-CCEEEEEEecCCCCC
Confidence            479999999999998886656 432  23332 112  444432   23    24457777876 477666653222111


Q ss_pred             CCe-eeEEEEEEecCCCceEEEEEE
Q 046697          122 NNY-RSVTSVNEFQKGGEIYTIVTE  145 (187)
Q Consensus       122 ~~y-~a~~~v~~~~~~g~~~t~~~~  145 (187)
                      ..+ ..++.+.+.++++++++....
T Consensus        69 ~~~s~vt~~~~~~~~g~T~lt~~~~   93 (132)
T PTZ00220         69 DVYSKVTIEFRAVEEDHTELKLTQT   93 (132)
T ss_pred             CCceEEEEEEEeCCCCcEEEEEEEe
Confidence            122 223333333334577776544

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=96.49  E-value=0.066  Score=41.37  Aligned_cols=137  Identities=10%  Similarity=0.043  Sum_probs=89.1

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG  117 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg  117 (187)
                      ...+..|+.+|+++++++.|...-....|.+.++.+...+....+-.++.+-++--.++..|.. +++..+.+.-.+++|
T Consensus         4 ~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~~l~~G   82 (146)
T COG2867           4 IERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIRETFTTRVT-LKPTARSIDMKLIDG   82 (146)
T ss_pred             eEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhheeeeeeeeee-ecCchhhhhhhhhcC
Confidence            3456789999999999999999843566788888887332234454555554431134555544 555556777788888


Q ss_pred             cccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046697          118 EHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLH  184 (187)
Q Consensus       118 ~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~  184 (187)
                      ++  +...+.-+..|..++++++.+..++ .+      ........+..+++.....+-+.+++.|.
T Consensus        83 PF--k~L~~~W~F~pl~~~~ckV~f~ldf-eF------~s~ll~~~~g~~f~~~a~~mv~aF~kRA~  140 (146)
T COG2867          83 PF--KYLKGGWQFTPLSEDACKVEFFLDF-EF------KSRLLGALIGPVFKRLASKMVEAFEKRAK  140 (146)
T ss_pred             Ch--hhhcCceEEEECCCCceEEEEEEEe-ee------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            64  7788888888976677777765543 22      12344555666666666666666666553

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=95.85  E-value=0.6  Score=35.96  Aligned_cols=64  Identities=19%  Similarity=0.282  Sum_probs=48.5

Q ss_pred             ChHHHHHHhh-cCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697           47 PAHVVWPFVR-RFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        47 pae~VW~vi~-df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      ..+++|.=+. .-..+..+.|.|.+|++..+++.--.|.++|+.+    .++|++. +++ ..++.|.+-.
T Consensus        18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~l~Rel~f~~~----~v~e~vt-~~~-~~~v~f~~~~   82 (141)
T cd08863          18 TRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTVLERELTFGPA----KIRETVT-LEP-PSRVHFLQAD   82 (141)
T ss_pred             CHHHHHhHHHhhhCCchhcccccceEEEEecCCCEEEEEEEECCc----eEEEEEE-ecC-CcEEEEEecC
Confidence            4679999866 4555888999999999983322356699999875    7999987 443 5889998876

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=94.37  E-value=2.3  Score=34.46  Aligned_cols=143  Identities=10%  Similarity=0.050  Sum_probs=75.0

Q ss_pred             ceeEEEEEEEcCChHHHH-HHhhcCCCCccccccceeeEecCCCCCCe--EEEEEEec-CCCc---ceeeEEEEEEeCCC
Q 046697           35 TCVSLITQRIDAPAHVVW-PFVRRFDNPQKYKHFIKSCNMHGDGGVGS--IREVTVVS-GLPA---STSTERLEILDDEK  107 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW-~vi~df~~~~~w~p~v~s~~~~G~g~vG~--vR~lt~~~-g~~~---~~v~ErL~~~D~~~  107 (187)
                      +... .+..|++|+++++ .++-|......|-+.+.++++...-+..+  ++.+...- +.+.   ..+.-|....+..+
T Consensus        49 k~~k-~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~  127 (209)
T cd08905          49 KVFR-LEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST  127 (209)
T ss_pred             cEEE-EEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence            4444 5679999999999 66778888889999999988862210111  23222111 1111   12222222222222


Q ss_pred             CeEEEEEEecc-cc-------CCCeeeEEEEEEecC--CCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 046697          108 HILSFRVVGGE-HR-------LNNYRSVTSVNEFQK--GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGV  177 (187)
Q Consensus       108 ~~~sY~vveg~-~p-------~~~y~a~~~v~~~~~--~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~  177 (187)
                      ..+.....+.+ .|       +....+...+.|.++  +.+.++|.   ...|+.........-.++-..--..|.+|++
T Consensus       128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~---~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~  204 (209)
T cd08905         128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWL---LSIDLKGWLPKSIINQVLSQTQVDFANHLRQ  204 (209)
T ss_pred             EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEE---EeecCCCCCCHHHHHHHhHHhHHHHHHHHHH
Confidence            22211112222 12       233445555666643  33555544   4456544455555555555555667888888


Q ss_pred             HHhh
Q 046697          178 VSMA  181 (187)
Q Consensus       178 ~le~  181 (187)
                      .++.
T Consensus       205 ~~~~  208 (209)
T cd08905         205 RMAS  208 (209)
T ss_pred             HHhc
Confidence            8764

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=93.45  E-value=3.5  Score=33.44  Aligned_cols=142  Identities=8%  Similarity=0.019  Sum_probs=73.7

Q ss_pred             ceeEEEEEEEcCChHHHH-HHhhcCCCCccccccceeeEecCCCCCC-e-EEEEEEec-CCCc---ceeeEEEEEEeCCC
Q 046697           35 TCVSLITQRIDAPAHVVW-PFVRRFDNPQKYKHFIKSCNMHGDGGVG-S-IREVTVVS-GLPA---STSTERLEILDDEK  107 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW-~vi~df~~~~~w~p~v~s~~~~G~g~vG-~-vR~lt~~~-g~~~---~~v~ErL~~~D~~~  107 (187)
                      +.. -...+|++|++.++ +++.|......|-+.+.++++...-+.. . ++.++..- +++.   ..+.-|-..-+. +
T Consensus        49 ~~f-k~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~-~  126 (209)
T cd08906          49 KTF-ILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRR-D  126 (209)
T ss_pred             cEE-EEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecC-C
Confidence            444 45678999999998 6899999988999999999887321011 1 12222211 1222   122223332232 2


Q ss_pred             CeE--EEEEEeccc-cCCCee-eE-----EEEEEe--cCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046697          108 HIL--SFRVVGGEH-RLNNYR-SV-----TSVNEF--QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG  176 (187)
Q Consensus       108 ~~~--sY~vveg~~-p~~~y~-a~-----~~v~~~--~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk  176 (187)
                      ..+  ..++.-... |..+|. +.     ..+.+.  +++.+.+||+.   ..|+......-..-.++....-.-|.+|+
T Consensus       127 ~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~---~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR  203 (209)
T cd08906         127 RYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWIL---NTDLKGRLPRYLIHQSLAATMFEFASHLR  203 (209)
T ss_pred             cEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEE---ecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            333  233332222 233442 22     223332  22345566553   44654445454555555555556678888


Q ss_pred             HHHhh
Q 046697          177 VVSMA  181 (187)
Q Consensus       177 ~~le~  181 (187)
                      +.++.
T Consensus       204 ~~~~~  208 (209)
T cd08906         204 QRIRD  208 (209)
T ss_pred             HHHhh
Confidence            87764

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=91.52  E-value=5.3  Score=30.84  Aligned_cols=132  Identities=19%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             EEEEEcCChHHHHHHhhcCCC----Cccccc---cceeeEecCCCCCCeEEEE-EEec-CC--------CcceeeEEEEE
Q 046697           40 ITQRIDAPAHVVWPFVRRFDN----PQKYKH---FIKSCNMHGDGGVGSIREV-TVVS-GL--------PASTSTERLEI  102 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~----~~~w~p---~v~s~~~~G~g~vG~vR~l-t~~~-g~--------~~~~v~ErL~~  102 (187)
                      ++..+++|+++||+++.|-.-    .+....   .+.+++..|+|  -.++.. .+.. ..        +.....+|-+.
T Consensus         3 ~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~   80 (159)
T PF10698_consen    3 HSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVTRTET   80 (159)
T ss_pred             EEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEEEEEE
Confidence            567999999999999987322    222222   24444443432  111111 1111 10        11123445566


Q ss_pred             E---eCCCCeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046697          103 L---DDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVV  178 (187)
Q Consensus       103 ~---D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~  178 (187)
                      +   ++..++.+|++--...| -...+++.+.+. ++|+.+++..+. ...  .|.-.....+++...+...|+...+.
T Consensus        81 w~~~~~g~~~g~~~~~~~G~P-~~~~G~~~L~~~-~~gt~~~~~g~v-~v~--VPlvGgkiE~~v~~~~~~~~~~e~~~  154 (159)
T PF10698_consen   81 WTPLDDGRRTGTFTVSIPGAP-VSISGTMRLRPD-GGGTRLTVEGEV-KVK--VPLVGGKIEKAVAENLRKLLEAEQEF  154 (159)
T ss_pred             EecCCCCeEEEEEEEEecCce-EEEEEEEEEecC-CCCEEEEEEEEE-EEE--EccccHHHHHHHHHHHHHHHHHHHHH
Confidence            6   45566667776543332 457888888774 356666655442 222  22323334444444545555444443

The function is not known.

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=91.33  E-value=6.6  Score=31.62  Aligned_cols=138  Identities=12%  Similarity=0.062  Sum_probs=75.4

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCc-ceeeEEE---EEEeC--CCCeEE
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPA-STSTERL---EILDD--EKHILS  111 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~-~~v~ErL---~~~D~--~~~~~s  111 (187)
                      -++..|++|++.+.+++.|...-+.|.|.+..++.. ..+..-.+-.+.+  ..|. -.-||=+   ..+|.  ++..+.
T Consensus        49 k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~--~~PwPv~~RD~v~~~~~~~~~~~~~~i~  126 (215)
T cd08877          49 RMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRV--DLPWPLSNREAVFRGFGVDRLEENGQIV  126 (215)
T ss_pred             EEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEE--eCceEecceEEEEEEEEEeeeccCCCEE
Confidence            357899999999999999998878999998887765 2221112222222  2221 0112322   11221  334332


Q ss_pred             EEE--Eec----------cccC--------CCeeeEEEEEEecCCCceEEEEEEEEeecCCCC-CCHHHHHHHHHHHHHH
Q 046697          112 FRV--VGG----------EHRL--------NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEG-NTVEDTKMFVDTVVKL  170 (187)
Q Consensus       112 Y~v--veg----------~~p~--------~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~-~~~~~~~~~~~~~~~~  170 (187)
                      -.+  ++.          .+|.        ..+.+...+.|.+++.+.++++.   ..||... ......-.+...+...
T Consensus       127 i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~---~~DP~g~~IP~~liN~~~k~~~~~  203 (215)
T cd08877         127 ILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVA---NVDPKMSLVPKSLLNFVARKFAGL  203 (215)
T ss_pred             EEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEE---EcCCCcccCCHHHHHHHHHHHHHH
Confidence            222  111          0221        22344455566654445555443   3454333 4566666666777777


Q ss_pred             HHHHHHHHHhh
Q 046697          171 NLQKLGVVSMA  181 (187)
Q Consensus       171 gL~~Lk~~le~  181 (187)
                      .|..|++.+++
T Consensus       204 ~~~~l~k~~~~  214 (215)
T cd08877         204 LFEKIQKAAKN  214 (215)
T ss_pred             HHHHHHHHHhc
Confidence            88888887764

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=91.23  E-value=5.6  Score=30.60  Aligned_cols=91  Identities=22%  Similarity=0.268  Sum_probs=56.4

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEec---CCCc-ceeeEEEEE--EeCCCCeEEE
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVS---GLPA-STSTERLEI--LDDEKHILSF  112 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~---g~~~-~~v~ErL~~--~D~~~~~~sY  112 (187)
                      ....|+||.|.||+..+.-+++....|.-. +..- |+ .++..-++.++-   |.|. -.-+-|+++  +|+ ..+|+=
T Consensus         6 ~~~~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~-~~~FtD   82 (153)
T COG4276           6 YRTTITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN-GSRFTD   82 (153)
T ss_pred             EeeEecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCC-cceeee
Confidence            456899999999999998888544443333 2222 53 233444454432   2221 245677777  775 477888


Q ss_pred             EEEeccccCCCeeeEEEEEEe
Q 046697          113 RVVGGEHRLNNYRSVTSVNEF  133 (187)
Q Consensus       113 ~vveg~~p~~~y~a~~~v~~~  133 (187)
                      ..+.|++|.-+..-+-+..+.
T Consensus        83 v~i~gPfp~~~WrHtH~F~~e  103 (153)
T COG4276          83 VCITGPFPALNWRHTHNFVDE  103 (153)
T ss_pred             eeecCCccceeeEEEeeeecC
Confidence            899999987656655554443

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=89.96  E-value=9.1  Score=30.96  Aligned_cols=166  Identities=11%  Similarity=0.044  Sum_probs=83.0

Q ss_pred             CChhhhcchhhhHhhhccC----------------CCCCCceeEEEEEEE-cCChHHHHHHhhcCCCCccccccceeeEe
Q 046697           11 LTPEEYAELRPIIERYHKF----------------EQKPNTCVSLITQRI-DAPAHVVWPFVRRFDNPQKYKHFIKSCNM   73 (187)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~I-~apae~VW~vi~df~~~~~w~p~v~s~~~   73 (187)
                      .|.|+|++..+++..-..-                ..+.-..... +..+ ++|++.+++++.|....+.|-+.+..+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~W~~~~~~~gi~iy~r~~~~~~~~~~k~-~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~   85 (222)
T cd08871           7 PTDADFEEFKKLCDSTDGWKLKYNKNNVKVWTKNPENSSIKMIKV-SAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFD   85 (222)
T ss_pred             CCHHHHHHHHHHhcCCCCcEEEEcCCCeEEEEeeCCCCceEEEEE-EEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEE
Confidence            5788888888877542110                1111112222 2344 79999999999998777899999888877


Q ss_pred             c-CCCCCCeEEEEEEecCCCc--c-eeeEEEEEEeCCCCeE--EEEEEecccc-CC------CeeeEEEEEEecCCCceE
Q 046697           74 H-GDGGVGSIREVTVVSGLPA--S-TSTERLEILDDEKHIL--SFRVVGGEHR-LN------NYRSVTSVNEFQKGGEIY  140 (187)
Q Consensus        74 ~-G~g~vG~vR~lt~~~g~~~--~-~v~ErL~~~D~~~~~~--sY~vveg~~p-~~------~y~a~~~v~~~~~~g~~~  140 (187)
                      . -.+..-.+-...+..-.+.  . .+.-|.. .+..+..+  ..++.-...| ..      .+.+...+.+.+++++.+
T Consensus        86 ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~v  164 (222)
T cd08871          86 ICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTL  164 (222)
T ss_pred             EEEcCCCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEE
Confidence            6 2221123333333321111  1 2222222 22222211  1222211222 12      234444555654445666


Q ss_pred             EEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          141 TIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       141 t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      +++.   ..|+..-......-.++....-..|.+|++.+++
T Consensus       165 t~~~---~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~  202 (222)
T cd08871         165 TYVT---QNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALK  202 (222)
T ss_pred             EEEE---ecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            6543   3454333434444444445455667777777665

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=89.77  E-value=8.4  Score=32.12  Aligned_cols=35  Identities=9%  Similarity=0.154  Sum_probs=31.5

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEec
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH   74 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~   74 (187)
                      ...++++|++++++++.|...-..|-+...+++++
T Consensus        81 ~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI  115 (235)
T cd08873          81 VELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEV  115 (235)
T ss_pred             EEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEE
Confidence            34579999999999999999977999999999987

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=89.08  E-value=11  Score=30.50  Aligned_cols=138  Identities=10%  Similarity=-0.000  Sum_probs=70.9

Q ss_pred             EEEEEcCChHHHHHHhhcCCCC--ccccccceeeEecC--CCCCCeEEEEEEec--CCCc---ceee-EEEEEEeCCCCe
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNP--QKYKHFIKSCNMHG--DGGVGSIREVTVVS--GLPA---STST-ERLEILDDEKHI  109 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~--~~w~p~v~s~~~~G--~g~vG~vR~lt~~~--g~~~---~~v~-ErL~~~D~~~~~  109 (187)
                      .+.+|+++++++++++.|..+.  +.|-+.+.++++..  ++...-+|. ....  ++..   ..+. ......++....
T Consensus        50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~  128 (208)
T cd08903          50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDGTIS  128 (208)
T ss_pred             EEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCceEE
Confidence            5678999999999999887653  68999999998872  221222222 1121  1101   1121 122222222222


Q ss_pred             EEEEEEecc-c-cCCCee-e-----EEEEEEec--CCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          110 LSFRVVGGE-H-RLNNYR-S-----VTSVNEFQ--KGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       110 ~sY~vveg~-~-p~~~y~-a-----~~~v~~~~--~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      +.+..++.+ . |-.+|. +     .....+.+  ++++.++|.   ...|+.........-.++....-.-|.+|++.+
T Consensus       129 i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~---~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~  205 (208)
T cd08903         129 SNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSF---FQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAV  205 (208)
T ss_pred             EeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE---EEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHH
Confidence            333334432 2 233332 2     22233332  233455544   455754445555555555455557788888887


Q ss_pred             hh
Q 046697          180 MA  181 (187)
Q Consensus       180 e~  181 (187)
                      .+
T Consensus       206 ~~  207 (208)
T cd08903         206 KA  207 (208)
T ss_pred             hh
Confidence            64

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=87.89  E-value=12  Score=29.85  Aligned_cols=35  Identities=17%  Similarity=0.439  Sum_probs=29.5

Q ss_pred             EEEEEcCChHHHHH-HhhcCCCCccccccceeeEec
Q 046697           40 ITQRIDAPAHVVWP-FVRRFDNPQKYKHFIKSCNMH   74 (187)
Q Consensus        40 v~~~I~apae~VW~-vi~df~~~~~w~p~v~s~~~~   74 (187)
                      .+.+|++|+++|.. ++.|....+.|-+.+..+++.
T Consensus        52 ~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i   87 (208)
T cd08868          52 LTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKII   87 (208)
T ss_pred             EEEEEcCCHHHHHHHHHcCccccceecCcccceEEE
Confidence            35789999999986 566888888999999998886

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=86.02  E-value=19  Score=30.06  Aligned_cols=35  Identities=9%  Similarity=0.309  Sum_probs=31.9

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEec
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH   74 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~   74 (187)
                      ....+++|++++++++.|...-..|-+.+.++++.
T Consensus        85 ~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vI  119 (240)
T cd08913          85 VEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELV  119 (240)
T ss_pred             EEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEE
Confidence            34689999999999999999988999999999997

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=85.86  E-value=14  Score=28.24  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=31.3

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEec
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH   74 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~   74 (187)
                      ....|++|+++||+++.|....+.|-+.+.++++.
T Consensus        43 ~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl   77 (193)
T cd00177          43 AEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVI   77 (193)
T ss_pred             EEEEECCCHHHHHHHHhCCchhhchhhcceEEEEE
Confidence            46789999999999999988877899999999887

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=84.14  E-value=21  Score=28.98  Aligned_cols=34  Identities=29%  Similarity=0.481  Sum_probs=31.1

Q ss_pred             EEEEcCChHHHHHHhhcCCCCccccccceeeEec
Q 046697           41 TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH   74 (187)
Q Consensus        41 ~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~   74 (187)
                      ..+|++|+++||+++.|...-+.|-+.++++++.
T Consensus        50 e~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl   83 (205)
T cd08874          50 AGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIH   83 (205)
T ss_pred             EEEEcCCHHHHHHHHhCcchhhhhHHhhhheeee
Confidence            4588999999999999999988999999999886

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=82.21  E-value=24  Score=28.28  Aligned_cols=135  Identities=16%  Similarity=0.103  Sum_probs=69.0

Q ss_pred             EEEE-cCChHHHHHHhhcCCCCccccccceeeEecCCCCC-CeEEEEEEecCCC--c---ceeeEEEEEEe-CCCCeEEE
Q 046697           41 TQRI-DAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGV-GSIREVTVVSGLP--A---STSTERLEILD-DEKHILSF  112 (187)
Q Consensus        41 ~~~I-~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~v-G~vR~lt~~~g~~--~---~~v~ErL~~~D-~~~~~~sY  112 (187)
                      ..++ ++|++.+.+++.|-..-+.|-..+.++++...... | .+.+.+....|  .   ..+.-|..-.| +....+..
T Consensus        55 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~-~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~  133 (209)
T cd08870          55 RGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSG-TEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT  133 (209)
T ss_pred             EEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCC-cEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence            3455 78999999999998887789999888877622111 2 22222211111  1   12322322233 22222222


Q ss_pred             EEEec-cc------cCCCeeeEEEEEEe--cCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          113 RVVGG-EH------RLNNYRSVTSVNEF--QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       113 ~vveg-~~------p~~~y~a~~~v~~~--~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      ..++. ..      .+..|.+...+.+.  +++++.+++.+.   .++........+..++....-..|++|++.+
T Consensus       134 ~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~---~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~  206 (209)
T cd08870         134 KGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYF---HNPDGGIPRELAKLAVKRGMPGFLKKLENAL  206 (209)
T ss_pred             eCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEE---ECCCCCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence            22222 11      24557777777776  334455554433   2443334444444444444445566666554

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=81.59  E-value=26  Score=28.18  Aligned_cols=140  Identities=14%  Similarity=0.038  Sum_probs=74.1

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCC--Cc---ceeeEEEEEEeCCCCe
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGL--PA---STSTERLEILDDEKHI  109 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~--~~---~~v~ErL~~~D~~~~~  109 (187)
                      ...++.+..++|++.+.+++.|-..-+.|-+.+.+++++ -++..+. +.+.+....  |.   ..+.-|-...|+.+..
T Consensus        46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~-~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~  124 (207)
T cd08911          46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGS-EIIYWEMQWPKPFANRDYVYVRRYIIDEENKL  124 (207)
T ss_pred             EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCC-EEEEEEEECCCCCCCccEEEEEEEEEcCCCCE
Confidence            344444455999999999999998877899999888887 3222222 223222111  11   2455555556665443


Q ss_pred             E---EEEEEecccc-------CCCeeeEEEEEEec---CCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046697          110 L---SFRVVGGEHR-------LNNYRSVTSVNEFQ---KGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG  176 (187)
Q Consensus       110 ~---sY~vveg~~p-------~~~y~a~~~v~~~~---~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk  176 (187)
                      +   ++++-....|       +..|.+...+.+..   ++|+++++.+.   .++..-...-....+.....-.-|.+|+
T Consensus       125 ~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~---~dPgG~IP~~lvN~~~~~~~~~~l~~l~  201 (207)
T cd08911         125 IVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYF---DNPGVNIPSYITSWVAMSGMPDFLERLR  201 (207)
T ss_pred             EEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEE---eCCCCccCHHHHHHHHHhhccHHHHHHH
Confidence            2   2222211222       35566777777763   24555554332   3533223333333344444445566666


Q ss_pred             HHH
Q 046697          177 VVS  179 (187)
Q Consensus       177 ~~l  179 (187)
                      +..
T Consensus       202 ~a~  204 (207)
T cd08911         202 NAA  204 (207)
T ss_pred             HHH
Confidence            644

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=80.29  E-value=28  Score=27.75  Aligned_cols=135  Identities=15%  Similarity=0.058  Sum_probs=67.9

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEec--CCCccee-eEEEEEEeCCCC--eEEEE
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVS--GLPASTS-TERLEILDDEKH--ILSFR  113 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~--g~~~~~v-~ErL~~~D~~~~--~~sY~  113 (187)
                      .+.+|++++++|++.+.+..  ..|-+.+.++++... +..=.+-...+..  ......+ .-|.-..+..+.  .+.+.
T Consensus        48 ~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~  125 (197)
T cd08869          48 ASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVET  125 (197)
T ss_pred             EEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEE
Confidence            45789999999999887753  689999999988621 1101111122221  1111222 222333333322  22333


Q ss_pred             EEec--cccC-----CCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          114 VVGG--EHRL-----NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       114 vveg--~~p~-----~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      -++.  ..|.     ..+.+...+.|.+++++.+|++..   .|+ .|....-.......+.-..|..|++.+.
T Consensus       126 Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~---~Dp-~G~iP~wl~N~~~~~~~~~~~~l~~~~~  195 (197)
T cd08869         126 SVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICR---VDL-RGRSPEWYNKVYGHLCARELLRIRDSFR  195 (197)
T ss_pred             CCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEE---ECC-CCCCCceeecchHhHHHHHHHHHHhhcc
Confidence            2321  2232     223344555666545567776543   353 3333322233344566677888877653

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
3kdh_A	190	Structure Of Ligand-Free Pyl2 Length = 190		2e-71
3nj0_A	193	X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Co		3e-71
3nj1_A	193	X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabact		4e-71
3kaz_A	176	Crystal Structure Of Abscisic Acid Receptor Pyl2 Le		1e-68
3nmh_A	178	Crystal Structure Of The Abscisic Receptor Pyl2 In		1e-68
3ujl_A	177	Crystal Structure Of Abscisic Acid Bound Pyl2 In Co		1e-68
3nmp_A	178	Crystal Structure Of The Abscisic Receptor Pyl2 Mut		1e-67
3oji_A	189	X-Ray Crystal Structure Of The Py13 -Pyrabactin Com		9e-65
3klx_A	209	Crystal Structure Of Native Abscisic Acid Receptor		1e-64
4dsb_A	186	Complex Structure Of Abscisic Acid Receptor Pyl3 Wi		4e-64
4dsc_A	188	Complex Structure Of Abscisic Acid Receptor Pyl3 Wi		2e-63
3k3k_A	211	Crystal Structure Of Dimeric Abscisic Acid (Aba) Re		8e-57
3k90_A	193	The Abscisic Acid Receptor Pyr1 In Complex With Abs		2e-56
3njo_A	194	X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Co		4e-56
3zvu_A	193	Structure Of The Pyr1 His60pro Mutant In Complex Wi		3e-55
3kdj_A	202	Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le		1e-45
3jrs_A	208	Crystal Structure Of (+)-Aba-Bound Pyl1 Length = 20		1e-45
3jrq_B	186	Crystal Structure Of (+)-aba-bound Pyl1 In Complex		5e-45
3qrz_B	223	Crystal Structure Of Native Abscisic Acid Receptor		1e-43
3kay_A	178	Crystal Structure Of Abscisic Acid Receptor Pyl1 Le		4e-43
3oqu_A	205	Crystal Structure Of Native Abscisic Acid Receptor		7e-43
3uqh_A	191	Crystal Strcuture Of Aba Receptor Pyl10 (Apo) Lengt		3e-40
3rt2_A	183	Crystal Structure Of Apo-Pyl10 Length = 183		3e-40
3rt0_C	183	Crystal Structure Of Pyl10-Hab1 Complex In The Abse		5e-40

>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2 Length = 190

Iteration: 1
 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 150/189 (79%), Gaps = 4/189 (2%)
Query: 3   ASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQ 62
           +S    +GLT EE   L P+I+ YH+FE  P TC SLITQRI APA VVWP +RRFDNP+
Sbjct: 2   SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPE 61
Query: 63  KYKHFIKSCNM-HGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
           +YKHF+K C +  GDG VGS+REVTV+SGLPASTSTERLE +DD+  +LSFRVVGGEHRL
Sbjct: 62  RYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRL 121
Query: 122 NNYRSVTSVNEF--QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
            NY+SVTSVNEF  Q  G++YT+V ESY VDIPEGNT EDTKMFVDTVVKLNLQKLGV +
Sbjct: 122 KNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAA 181
Query: 180 M-ASLHGHE 187
             A +H  E
Sbjct: 182 TSAPMHDDE 190

>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex Length = 193

Iteration: 1
 Score =  264 bits (674), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 150/189 (79%), Gaps = 4/189 (2%)
Query: 3   ASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQ 62
           +S    +GLT EE   L P+I+ YH+FE  P TC SLITQRI APA VVWP +RRFDNP+
Sbjct: 5   SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPE 64
Query: 63  KYKHFIKSCNM-HGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
           +YKHF+K C +  GDG VGS+REVTV+SGLPASTSTERLE +DD+  +LSFRVVGGEHRL
Sbjct: 65  RYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRL 124
Query: 122 NNYRSVTSVNEF--QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
            NY+SVTSVNEF  Q  G++YT+V ESY VDIPEGNT EDTKMFVDTVVKLNLQKLGV +
Sbjct: 125 KNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAA 184
Query: 180 M-ASLHGHE 187
             A +H  E
Sbjct: 185 TSAPMHDDE 193

>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A Complex Length = 193

Iteration: 1
 Score =  263 bits (673), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 150/189 (79%), Gaps = 4/189 (2%)
Query: 3   ASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQ 62
           +S    +GLT EE   L P+I+ YH+FE  P TC SLITQRI APA VVWP +RRFDNP+
Sbjct: 5   SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPE 64
Query: 63  KYKHFIKSCNM-HGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
           +YKHF+K C +  GDG VGS+REVTV+SGLPASTSTERLE +DD+  +LSFR+VGGEHRL
Sbjct: 65  RYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRL 124
Query: 122 NNYRSVTSVNEF--QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
            NY+SVTSVNEF  Q  G++YT+V ESY VDIPEGNT EDTKMFVDTVVKLNLQKLGV +
Sbjct: 125 KNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAA 184
Query: 180 M-ASLHGHE 187
             A +H  E
Sbjct: 185 TSAPMHDDE 193

>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 Length = 176

Iteration: 1
 Score =  255 bits (651), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/171 (70%), Positives = 141/171 (82%), Gaps = 3/171 (1%)
Query: 15  EYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNM- 73
           E   L P+I+ YH+FE  P TC SLITQRI APA VVWP +RRFDNP++YKHF+K C + 
Sbjct: 2   EQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLI 61
Query: 74  HGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEF 133
            GDG VGS+REVTV+SGLPASTSTERLE +DD+  +LSFRVVGGEHRL NY+SVTSVNEF
Sbjct: 62  SGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEF 121
Query: 134 --QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS 182
             Q  G++YT+V ESY VDIPEGNT EDTKMFVDTVVKLNLQKLGV + ++
Sbjct: 122 LNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 172

>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex With Pyrabactin Length = 178

Iteration: 1
 Score =  255 bits (651), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/171 (70%), Positives = 141/171 (82%), Gaps = 3/171 (1%)
Query: 15  EYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNM- 73
           E   L P+I+ YH+FE  P TC SLITQRI APA VVWP +RRFDNP++YKHF+K C + 
Sbjct: 3   EQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLI 62
Query: 74  HGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEF 133
            GDG VGS+REVTV+SGLPASTSTERLE +DD+  +LSFRVVGGEHRL NY+SVTSVNEF
Sbjct: 63  SGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEF 122
Query: 134 --QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS 182
             Q  G++YT+V ESY VDIPEGNT EDTKMFVDTVVKLNLQKLGV + ++
Sbjct: 123 LNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 173

>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex With Type 2c Protein Phosphatase Abi2 Length = 177

Iteration: 1
 Score =  254 bits (650), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/171 (70%), Positives = 141/171 (82%), Gaps = 3/171 (1%)
Query: 15  EYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNM- 73
           E   L P+I+ YH+FE  P TC SLITQRI APA VVWP +RRFDNP++YKHF+K C + 
Sbjct: 3   EQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLI 62
Query: 74  HGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEF 133
            GDG VGS+REVTV+SGLPASTSTERLE +DD+  +LSFRVVGGEHRL NY+SVTSVNEF
Sbjct: 63  SGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEF 122
Query: 134 --QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS 182
             Q  G++YT+V ESY VDIPEGNT EDTKMFVDTVVKLNLQKLGV + ++
Sbjct: 123 LNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 173

>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant A93f In Complex With Pyrabactin Length = 178

Iteration: 1
 Score =  252 bits (643), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/171 (70%), Positives = 140/171 (81%), Gaps = 3/171 (1%)
Query: 15  EYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNM- 73
           E   L P+I+ YH+FE  P TC SLITQRI APA VVWP +RRFDNP++YKHF+K C + 
Sbjct: 3   EQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLI 62
Query: 74  HGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEF 133
            GDG VGS+REVTV+SGLP STSTERLE +DD+  +LSFRVVGGEHRL NY+SVTSVNEF
Sbjct: 63  SGDGDVGSVREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEF 122
Query: 134 --QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS 182
             Q  G++YT+V ESY VDIPEGNT EDTKMFVDTVVKLNLQKLGV + ++
Sbjct: 123 LNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSA 173

>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex Length = 189

Iteration: 1
 Score =  242 bits (617), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 119/186 (63%), Positives = 140/186 (75%), Gaps = 11/186 (5%)
Query: 8   PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
           P GLT +E++ L  II  +H F + PNTC SLI  R+DAPAH +W FVR F NP KYKHF
Sbjct: 2   PYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHF 61
Query: 68  IKSCNMHGDGG------VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
           IKSC +  +G       VG+IREV+VVSGLPASTS E LE+LD+EK ILSFRV+GGEHRL
Sbjct: 62  IKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRL 121
Query: 122 NNYRSVTSVNEF-----QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG 176
           NNYRSVTSVNEF      K   +Y++V ESY+VDIP+GNT EDT+MFVDTVVK NLQ L 
Sbjct: 122 NNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLA 181
Query: 177 VVSMAS 182
           V+S AS
Sbjct: 182 VISTAS 187

>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3 Length = 209

Iteration: 1
 Score =  241 bits (616), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/186 (63%), Positives = 140/186 (75%), Gaps = 11/186 (5%)
Query: 8   PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
           P GLT +E++ L  II  +H F + PNTC SLI  R+DAPAH +W FVR F NP KYKHF
Sbjct: 22  PYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHF 81
Query: 68  IKSCNMHGDGG------VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
           IKSC +  +G       VG+IREV+VVSGLPASTS E LE+LD+EK ILSFRV+GGEHRL
Sbjct: 82  IKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRL 141
Query: 122 NNYRSVTSVNEF-----QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG 176
           NNYRSVTSVNEF      K   +Y++V ESY+VDIP+GNT EDT+MFVDTVVK NLQ L 
Sbjct: 142 NNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLA 201
Query: 177 VVSMAS 182
           V+S AS
Sbjct: 202 VISTAS 207

>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With (+)-Aba In Spacegroup Of I 212121 At 2.70a Length = 186

Iteration: 1
 Score =  240 bits (612), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 11/184 (5%)
Query: 10  GLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIK 69
           GLT +E++ L  II  +H F + PNTC SLI  R+DAPAH +W FVR F NP KYKHFIK
Sbjct: 1   GLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIK 60
Query: 70  SCNMHGDGG------VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNN 123
           SC +  +G       VG+IREV+VVSGLPASTS E LE+LD+EK ILSFRV+GGEHRLNN
Sbjct: 61  SCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNN 120
Query: 124 YRSVTSVNEF-----QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVV 178
           YRSVTSVNEF      K   +Y++V ESY+VDIP+GNT EDT+MFVDTVVK NLQ L V+
Sbjct: 121 YRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVI 180
Query: 179 SMAS 182
           S AS
Sbjct: 181 STAS 184

>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With (+)-Aba In Spacegroup Of H32 At 1.95a Length = 188

Iteration: 1
 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/183 (63%), Positives = 138/183 (75%), Gaps = 11/183 (6%)
Query: 11  LTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKS 70
           LT +E++ L  II  +H F + PNTC SLI  R+DAPAH +W FVR F NP KYKHFIKS
Sbjct: 4   LTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKS 63
Query: 71  CNMHGDGG------VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNY 124
           C +  +G       VG+IREV+VVSGLPASTS E LE+LD+EK ILSFRV+GGEHRLNNY
Sbjct: 64  CTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNY 123
Query: 125 RSVTSVNEF-----QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           RSVTSVNEF      K   +Y++V ESY+VDIP+GNT EDT+MFVDTVVK NLQ L V+S
Sbjct: 124 RSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 183
Query: 180 MAS 182
            AS
Sbjct: 184 TAS 186

>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid And Aba-Free Open-Lid Subunits Length = 211

Iteration: 1
 Score =  216 bits (549), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 131/176 (74%), Gaps = 2/176 (1%)
Query: 8   PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
           P  LTPEE +EL+  I  +H ++  P +C SL  QRI AP  +VW  VRRFD PQ YKHF
Sbjct: 22  PSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHF 81
Query: 68  IKSCNMHGD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYR 125
           IKSC++  +    VG  R+V V+SGLPA+TSTERL+ILDDE+ +  F ++GGEHRL NY+
Sbjct: 82  IKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYK 141
Query: 126 SVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181
           SVT+V+ F+K   I+T+V ESYVVD+PEGN+ +DT+MF DTVVKLNLQKL  V+ A
Sbjct: 142 SVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 197

>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic Acid Length = 193

Iteration: 1
 Score =  214 bits (546), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 130/173 (75%), Gaps = 2/173 (1%)
Query: 11  LTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKS 70
           LTPEE +EL+  I  +H ++  P +C SL  QRI AP  +VW  VRRFD PQ YKHFIKS
Sbjct: 7   LTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKS 66
Query: 71  CNMHGD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVT 128
           C++  +    VG  R+V V+SGLPA+TSTERL+ILDDE+ +  F ++GGEHRL NY+SVT
Sbjct: 67  CSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVT 126
Query: 129 SVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181
           +V+ F+K   I+T+V ESYVVD+PEGN+ +DT+MF DTVVKLNLQKL  V+ A
Sbjct: 127 TVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 179

>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex Length = 194

Iteration: 1
 Score =  213 bits (543), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/176 (57%), Positives = 130/176 (73%), Gaps = 2/176 (1%)
Query: 8   PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
           P  LTPEE +EL+  I  +H ++  P +C SL  QRI AP  +VW  VRRFD PQ YKHF
Sbjct: 5   PSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHF 64
Query: 68  IKSCNMHGD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYR 125
           IKSC++  +    VG  R+V V+SGL A+TSTERL+ILDDE+ +  F ++GGEHRL NY+
Sbjct: 65  IKSCSVEQNFEMRVGCTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLTNYK 124
Query: 126 SVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181
           SVT+V+ F+K   I+T+V ESYVVD+PEGN+ +DT+MF DTVVKLNLQKL  V+ A
Sbjct: 125 SVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 180

>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The Hab1 Phosphatase And Abscisic Acid Length = 193

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/173 (57%), Positives = 129/173 (74%), Gaps = 2/173 (1%)
Query: 11  LTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKS 70
           LTPEE +EL+  I  +H ++  P +C SL  QRI AP  +VW  VRRFD PQ YK FIKS
Sbjct: 7   LTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKPFIKS 66
Query: 71  CNMHGD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVT 128
           C++  +    VG  R+V V+SGLPA+TSTERL+ILDDE+ +  F ++GGEHRL NY+SVT
Sbjct: 67  CSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVT 126
Query: 129 SVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181
           +V+ F+K   I+T+V ESYVVD+PEGN+ +DT+MF DTVVKLNLQKL  V+ A
Sbjct: 127 TVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 179

>pdb|3KDJ|A Chain A, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 202

Iteration: 1
 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 126/182 (69%), Gaps = 5/182 (2%)
Query: 5   QAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKY 64
           Q  P  LT +E+ +L   I  +H ++     C SL+ QRI AP   VW  VRRFD PQ Y
Sbjct: 7   QTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIY 66
Query: 65  KHFIKSCNMHGD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLN 122
           KHFIKSCN+  D    VG  R+V V+SGLPA+TS ERL++LDD++ +  F + GGEHRL 
Sbjct: 67  KHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR 126
Query: 123 NYRSVTSVNEF---QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           NY+SVT+V+ F   ++   I+T+V ESYVVD+PEGN+ EDT++F DTV++LNLQKL  ++
Sbjct: 127 NYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASIT 186
Query: 180 MA 181
            A
Sbjct: 187 EA 188

>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1 Length = 208

Iteration: 1
 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 126/182 (69%), Gaps = 5/182 (2%)
Query: 5   QAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKY 64
           Q  P  LT +E+ +L   I  +H ++     C SL+ QRI AP   VW  VRRFD PQ Y
Sbjct: 23  QTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIY 82
Query: 65  KHFIKSCNMHGD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLN 122
           KHFIKSCN+  D    VG  R+V V+SGLPA+TS ERL++LDD++ +  F + GGEHRL 
Sbjct: 83  KHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR 142
Query: 123 NYRSVTSVNEF---QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           NY+SVT+V+ F   ++   I+T+V ESYVVD+PEGN+ EDT++F DTV++LNLQKL  ++
Sbjct: 143 NYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASIT 202
Query: 180 MA 181
            A
Sbjct: 203 EA 204

>pdb|3JRQ|B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 186

Iteration: 1
 Score =  176 bits (447), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 125/179 (69%), Gaps = 5/179 (2%)
Query: 8   PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
           P  LT +E+ +L   I  +H ++     C SL+ QRI AP   VW  VRRFD PQ YKHF
Sbjct: 5   PSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHF 64
Query: 68  IKSCNMHGD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYR 125
           IKSCN+  D    VG  R+V V+SGLPA+TS ERL++LDD++ +  F + GGEHRL NY+
Sbjct: 65  IKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYK 124
Query: 126 SVTSVNEF---QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181
           SVT+V+ F   ++   I+T+V ESYVVD+PEGN+ EDT++F DTV++LNLQKL  ++ A
Sbjct: 125 SVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEA 183

>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1 Length = 178

Iteration: 1
 Score =  170 bits (431), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 121/172 (70%), Gaps = 5/172 (2%)
Query: 15  EYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH 74
           E+ +L   I  +H ++     C SL+ QRI AP   VW  VRRFD PQ YKHFIKSCN+ 
Sbjct: 3   EFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVS 62
Query: 75  GD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNE 132
            D    VG  R+V V+SGLPA+TS ERL++LDD++ +  F + GGEHRL NY+SVT+V+ 
Sbjct: 63  EDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHR 122
Query: 133 F---QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181
           F   ++   I+T+V ESYVVD+PEGN+ EDT++F DTV++LNLQKL  ++ A
Sbjct: 123 FEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEA 174

>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9 With Aba Length = 205

Iteration: 1
 Score =  169 bits (429), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 110/157 (70%)
Query: 23  IERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSI 82
           +  +H+   + N C S + + I AP H+VW  VRRFD PQKYK F+  C + GD  +GS+
Sbjct: 39  VRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTVIGDPEIGSL 98
Query: 83  REVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTI 142
           REV V SGLPA+TSTERLE+LDDE+HIL  +++GG+HRL NY S+ +V+     G   T+
Sbjct: 99  REVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEIIEGRAGTM 158
Query: 143 VTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           V ES+VVD+P+GNT ++T  FV+ +++ NL+ L  VS
Sbjct: 159 VIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVS 195

>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo) Length = 191

Iteration: 1
 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 23  IERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDG-GVGS 81
           I+++H+ E   + C S + + I AP H+VW  VRRFD PQKYK FI  C + G    VGS
Sbjct: 14  IKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGS 73
Query: 82  IREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYT 141
           +REV + SGLPA+ STE LEILDD +HIL  R+VGG+HRL NY S  S++     G+  T
Sbjct: 74  VREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGT 133
Query: 142 IVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           +  ES+VVD+PEGNT E+T  FV+ +++ NL  L  V+
Sbjct: 134 LAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVT 171

>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10 Length = 183

Iteration: 1
 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 23  IERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDG-GVGS 81
           I+++H+ E   + C S + + I AP H+VW  VRRFD PQKYK FI  C + G    VGS
Sbjct: 14  IKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGS 73
Query: 82  IREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYT 141
           +REV + SGLPA+ STE LEILDD +HIL  R+VGG+HRL NY S  S++     G+  T
Sbjct: 74  VREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGT 133
Query: 142 IVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           +  ES+VVD+PEGNT E+T  FV+ +++ NL  L  V+
Sbjct: 134 LAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVT 171

>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 183

Iteration: 1
 Score =  160 bits (404), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 23  IERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDG-GVGS 81
           I+++H+ E   + C S + + I AP H+VW  VRRFD PQKYK FI  C + G    VGS
Sbjct: 14  IKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGS 73
Query: 82  IREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYT 141
           +REV + SGLPA+ STE LEILDD +HIL  R+VGG+HRL NY S  S++     G+  T
Sbjct: 74  VREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGT 133
Query: 142 IVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           +  ES+VVD+PEGNT E+T  FV+ +++ NL  L  V+
Sbjct: 134 LAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADVT 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	7e-81
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	3e-80
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	6e-80
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	3e-73
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	1e-68
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	6e-67
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	2e-57
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	4e-27
2le1_A	151	Uncharacterized protein; structural genomics, nort	1e-26
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	1e-22
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	9e-21
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	5e-20
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	6e-20
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	7e-20
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	5e-19
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	1e-18
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	2e-17
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	3e-17
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	2e-16
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	5e-16
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	2e-10

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 3klx_A Length = 189

 Score =  237 bits (605), Expect = 7e-81
 Identities = 119/186 (63%), Positives = 140/186 (75%), Gaps = 11/186 (5%)

Query: 8   PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
           P GLT +E++ L  II  +H F + PNTC SLI  R+DAPAH +W FVR F NP KYKHF
Sbjct: 2   PYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHF 61

Query: 68  IKSCNMHGDGG------VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
           IKSC +  +G       VG+IREV+VVSGLPASTS E LE+LD+EK ILSFRV+GGEHRL
Sbjct: 62  IKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRL 121

Query: 122 NNYRSVTSVNEF-----QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG 176
           NNYRSVTSVNEF      K   +Y++V ESY+VDIP+GNT EDT+MFVDTVVK NLQ L 
Sbjct: 122 NNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLA 181

Query: 177 VVSMAS 182
           V+S AS
Sbjct: 182 VISTAS 187

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score =  236 bits (603), Expect = 3e-80
 Identities = 101/174 (58%), Positives = 130/174 (74%), Gaps = 2/174 (1%)

Query: 8   PQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF 67
           P  LTPEE +EL+  I  +H ++  P +C SL  QRI AP  +VW  VRRFD PQ YKHF
Sbjct: 22  PSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHF 81

Query: 68  IKSCNMHG--DGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYR 125
           IKSC++    +  VG  R+V V+SGLPA+TSTERL+ILDDE+ +  F ++GGEHRL NY+
Sbjct: 82  IKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYK 141

Query: 126 SVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           SVT+V+ F+K   I+T+V ESYVVD+PEGN+ +DT+MF DTVVKLNLQKL  V+
Sbjct: 142 SVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVA 195

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score =  235 bits (601), Expect = 6e-80
 Identities = 94/180 (52%), Positives = 125/180 (69%), Gaps = 5/180 (2%)

Query: 5   QAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKY 64
           Q  P  LT +E+ +L   I  +H ++     C SL+ QRI AP   VW  VRRFD PQ Y
Sbjct: 23  QTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIY 82

Query: 65  KHFIKSCNMHGD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLN 122
           KHFIKSCN+  D    VG  R+V V+SGLPA+TS ERL++LDD++ +  F + GGEHRL 
Sbjct: 83  KHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLR 142

Query: 123 NYRSVTSVNEFQKG---GEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           NY+SVT+V+ F+K      I+T+V ESYVVD+PEGN+ EDT++F DTV++LNLQKL  ++
Sbjct: 143 NYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASIT 202

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score =  218 bits (555), Expect = 3e-73
 Identities = 129/189 (68%), Positives = 150/189 (79%), Gaps = 4/189 (2%)

Query: 3   ASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQ 62
           +S    +GLT EE   L P+I+ YH+FE  P TC SLITQRI APA VVWP +RRFDNP+
Sbjct: 2   SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPE 61

Query: 63  KYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
           +YKHF+K C +  GDG VGS+REVTV+SGLPASTSTERLE +DD+  +LSFRVVGGEHRL
Sbjct: 62  RYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRL 121

Query: 122 NNYRSVTSVNEF--QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
            NY+SVTSVNEF  Q  G++YT+V ESY VDIPEGNT EDTKMFVDTVVKLNLQKLGV +
Sbjct: 122 KNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAA 181

Query: 180 -MASLHGHE 187
             A +H  E
Sbjct: 182 TSAPMHDDE 190

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205

 Score =  206 bits (526), Expect = 1e-68
 Identities = 80/178 (44%), Positives = 112/178 (62%)

Query: 2   DASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNP 61
                   G       E    +  +H+   + N C S + + I AP H+VW  VRRFD P
Sbjct: 18  QMMDGVEGGTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQP 77

Query: 62  QKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121
           QKYK F+  C + GD  +GS+REV V SGLPA+TSTERLE+LDDE+HIL  +++GG+HRL
Sbjct: 78  QKYKPFVSRCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRL 137

Query: 122 NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
            NY S+ +V+     G   T+V ES+VVD+P+GNT ++T  FV+ +++ NL+ L  VS
Sbjct: 138 KNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVS 195

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score =  201 bits (513), Expect = 6e-67
 Identities = 80/171 (46%), Positives = 111/171 (64%), Gaps = 2/171 (1%)

Query: 11  LTPEEYAELRP-IIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIK 69
           +  +E  ++    I+++H+ E   + C S + + I AP H+VW  VRRFD PQKYK FI 
Sbjct: 1   MNGDETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFIS 60

Query: 70  SCNMHGDGG-VGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVT 128
            C + G    VGS+REV + SGLPA+ STE LEILDD +HIL  R+VGG+HRL NY S  
Sbjct: 61  RCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTI 120

Query: 129 SVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179
           S++     G+  T+  ES+VVD+PEGNT E+T  FV+ +++ NL  L  V+
Sbjct: 121 SLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVT 171

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} PDB: 3cnw_A Length = 146

 Score = 99.1 bits (246), Expect = 4e-27
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 11/148 (7%)

Query: 41  TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERL 100
           +  I      VW  +  F++   +  +I S  +      G +R +    G    T  ERL
Sbjct: 7   SMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEG---GRVRHLANPDG---ETIIERL 60

Query: 101 EILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDT 160
           E+ +D++   ++ ++     + NY S   V E  +     ++V  S     P   + E+ 
Sbjct: 61  EVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNT--SLVEWSGTFT-PVAVSDEEA 117

Query: 161 KMFVDTVVKLNLQKL--GVVSMASLHGH 186
              V  +    L+ L    + +   H H
Sbjct: 118 INLVHGIYSDGLKALQHAFLDLEHHHHH 145

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score = 98.3 bits (244), Expect = 1e-26
 Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 8/149 (5%)

Query: 41  TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGG--VGSIREVTVVSGLPASTSTE 98
           +  + APA  VW  V  F    ++   + +  + G      G+ R     +        E
Sbjct: 7   SVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTE---EELVE 63

Query: 99  RLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVE 158
           RL   D+    L + +      + N+R+V  V            V  + + D       E
Sbjct: 64  RLVERDESARRLVYTMPDPPFPITNHRAVLEVVPRDDRH---CTVVWTAMFDCSPETARE 120

Query: 159 DTKMFVDTVVKLNLQKLGVVSMASLHGHE 187
              +  D V  + L  L        H H 
Sbjct: 121 LESVIGDGVFAVGLNALAERYGRLEHHHH 149

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160

 Score = 87.8 bits (217), Expect = 1e-22
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 44  IDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEIL 103
           +DAP   VW  +R F +       IKSC   G GG  S+    +++G       + L   
Sbjct: 10  VDAPVERVWSRIRNFHDFSWAPSLIKSCKKVGGGGGYSVGARRLLNG----EFLDTLIAY 65

Query: 104 DDEKHILSFRVVGGE-----HRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVE 158
            + +  + + +  G        + NY     +          T V  S   +      VE
Sbjct: 66  SEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDT--TFVEWSGSWESASTEAVE 123

Query: 159 DTKMFVDTVVKLNLQKL 175
               +++TV +  L  L
Sbjct: 124 ----YMNTVYRSLLADL 136

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score = 83.1 bits (205), Expect = 9e-21
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 8/134 (5%)

Query: 44  IDAPAHVVW-PFVRRFDN--PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTER 99
           +      +W    + F    P+   H +K   +  GDGGVG+I     +  +  S   E 
Sbjct: 11  LSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREE 70

Query: 100 LEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEF---QKGGEIYTIVTESYVV-DIPEGN 155
           +   D+  H +  +V+ G +         +  +    ++   +  +        DI E  
Sbjct: 71  ITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKV 130

Query: 156 TVEDTKMFVDTVVK 169
           T   T       ++
Sbjct: 131 TPTKTSQSTLMYLR 144

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score = 82.0 bits (202), Expect = 6e-20
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 20  RPIIERYHKFEQKPNTCVSLITQR-IDAPAHVVWPFVRRFDN----PQKYKHFIKSCNMH 74
           RP +       Q       +  +  + A A  +W            P       +   + 
Sbjct: 12  RPFLHHQGIINQVSTVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII 71

Query: 75  GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQ 134
           GDGGVG+I ++T V G       E+  ++D+E  +   +++ G +               
Sbjct: 72  GDGGVGTILDMTFVPGEFPHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVV 131

Query: 135 KGGEIYTIVT 144
             G+   ++ 
Sbjct: 132 PTGKDSCVIK 141

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score = 80.8 bits (199), Expect = 7e-20
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 46  APAHVVWPFVRRFDN--PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEI 102
            P  +   FV   DN  P+     IK   +  GDGG G+I+++T   G        +++ 
Sbjct: 14  PPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDS 73

Query: 103 LDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYV------VDIPEGNT 156
           +D E +  S+ ++ G+   +    ++   +        +I+  +        V+I E + 
Sbjct: 74  IDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEH- 132

Query: 157 VEDTKMFVDTVVK 169
           V+  K     + K
Sbjct: 133 VKAGKEKASNLFK 145

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score = 78.5 bits (193), Expect = 5e-19
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 44  IDAPAHVVW-PFVRRFDN--PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTER 99
              PA  ++  F+   DN  P+     I S     G+GG G+I++++   G P     +R
Sbjct: 11  SVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDR 70

Query: 100 LEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIV--TESYVVDIPEGNTV 157
           ++ +D      S+ V+ G    +    +++  +        +I+     Y          
Sbjct: 71  VDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKA 130

Query: 158 EDTKMFVDTVVKL 170
           E  K   +    L
Sbjct: 131 EQIKASKEMGETL 143

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score = 77.7 bits (191), Expect = 1e-18
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 13/132 (9%)

Query: 44  IDAPAHVVWPFVRRFDN--PQKYKHFIKSCNMH-GDGG-VGSIREVTVVSGLPASTSTER 99
           I A A           +   +     I+ C++H GD G VGSI     V    A  + ER
Sbjct: 25  IKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKER 84

Query: 100 LEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQ-KGGEIYTIVT-----ESYVVDIPE 153
           +E ++ +K++++FRV+ G   +  Y+S     +   K G   +IV      E    ++  
Sbjct: 85  IEAVEPDKNLITFRVIEG-DLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAH 143

Query: 154 GNTVED--TKMF 163
             T+     ++ 
Sbjct: 144 PETLLQFCVEVS 155

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score = 74.6 bits (183), Expect = 2e-17
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 46  APAHVVWPFVRRFDN-PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEIL 103
           APA +     +  D   QK    I+S  +  G+GGVG+I+++T   G   S   ++++ +
Sbjct: 14  APAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAI 73

Query: 104 DDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVT 144
           D+      + +VGG     +   ++   +   G    +I  
Sbjct: 74  DEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISK 114

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score = 74.3 bits (182), Expect = 3e-17
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 46  APAHVVWPFVRRFDN--PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEI 102
           AP  +    V        +   H  KS  +  GDGGVG++ ++T V G P +    + + 
Sbjct: 21  APHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDE 80

Query: 103 LDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGE 138
           +D       + +  G+   +N   V    + +  G 
Sbjct: 81  IDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGG 116

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score = 72.0 bits (176), Expect = 2e-16
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 46  APAHVVWPFVRRFDN-PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEIL 103
           APA +    V   D    K    I+S  +  G+GG G+I+++T + G  +     ++E +
Sbjct: 15  APAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAI 74

Query: 104 DDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTV--EDTK 161
           D+     ++ +VGG    +    ++   +  +G    +I   +  ++         E+ K
Sbjct: 75  DEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGK 134

Query: 162 MFVDTVVKL 170
                    
Sbjct: 135 AAKARGDAF 143

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score = 70.4 bits (172), Expect = 5e-16
 Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 46  APAHVVWPFVRRFDN--PQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEIL 103
           APA +     +  D   P+  +       + G+GG G+I+++  +     S    +L+ +
Sbjct: 14  APAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAI 73

Query: 104 DDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVED 159
           D+     ++ ++GGE    +   ++  ++   G +  +I   +           E 
Sbjct: 74  DEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSET 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	100.0
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	100.0
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	100.0
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	100.0
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	100.0
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	100.0
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	100.0
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.97
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.95
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.93
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	99.93
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	99.93
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	99.93
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	99.93
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	99.92
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	99.92
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	99.92
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	99.92
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	99.92
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	99.91
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	99.91
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	99.9
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.71
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.64
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.63
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.55
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.54
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.46
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.23
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.21
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.2
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.13
2leq_A	146	Uncharacterized protein; start domains, structural	98.94
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.92
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	98.85
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	98.79
2il5_A	171	Hypothetical protein; structural genomics, APC2365	98.78
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.78
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.74
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	98.71
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.7
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.62
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.61
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.6
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.57
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.55
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.55
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.54
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.49
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.47
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.47
2lcg_A	142	Uncharacterized protein; start domain, structural	98.47
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.44
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.44
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.42
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.41
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.39
3put_A	166	Hypothetical conserved protein; structural genomic	98.36
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.19
3qsz_A	189	STAR-related lipid transfer protein; structural ge	98.08
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	97.93
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	97.93
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	97.86
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	97.63
2lio_A	136	Uncharacterized protein; structural genomics, nort	97.62
2luz_A	192	CALU16; structural genomics, northeast structural	97.53
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.31
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	97.22
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	95.42
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	91.92
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	90.51
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	87.34
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	86.99
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	83.28

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=100.00  E-value=4e-45  Score=292.79  Aligned_cols=184  Identities=68%  Similarity=1.103  Sum_probs=162.0

Q ss_pred             CCCCCCCCCChhhhcchhhhHhhhccCCCCCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCe
Q 046697            3 ASQAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGS   81 (187)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~   81 (187)
                      .+.+.|+|||.+||.++++.|.+.|+|+++|++|.++++.+|+||+++||++++||++++.|+|.|++|+++ |+|++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~I~Apa~~vW~lv~df~~~~~w~p~I~s~e~~eGdg~vGs   81 (190)
T 3kl1_A            2 SSSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS   81 (190)
T ss_dssp             --------CCHHHHHHHHHHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESSSSTTC
T ss_pred             CCCCCCCcCCHHHHhhhhHHHHHHhccCCCCCceeEEEEEEecCCHHHHHHHHhCCCChhHcccccCEEEEEcCCCCCCe
Confidence            356789999999999999999999999999999999999999999999999999999999999999999999 9988999


Q ss_pred             EEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccccCCCeeeEEEEEEecC--CCceEEEEEEEEeecCCCCCCHHH
Q 046697           82 IREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQK--GGEIYTIVTESYVVDIPEGNTVED  159 (187)
Q Consensus        82 vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~--~g~~~t~~~~~~~~d~p~~~~~~~  159 (187)
                      ||+|+|.+|.+.++++|||+++|+++|+|+|+|++|++|+.+|.+++.+.++..  ++...|.+.|++.+++|++.++++
T Consensus        82 VR~~t~~~G~p~~~vkErL~~iD~~~~~~sY~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g~~~e~  161 (190)
T 3kl1_A           82 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEED  161 (190)
T ss_dssp             EEEEEECSSSSCEEEEEEEEEEETTTTEEEEEEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTTCCHHH
T ss_pred             EEEEEecCCCccceEEEEEEEEeccCCEEEEEEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCCCCHHH
Confidence            999999999777799999999999999999999999999999999999999732  222345566677778899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          160 TKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       160 ~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      +..+++++|+.||++|++.+|+++.+-
T Consensus       162 ~~~~~~~~~~~gL~~L~~~~e~~~~~~  188 (190)
T 3kl1_A          162 TKMFVDTVVKLNLQKLGVAATSAPMHD  188 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999999998763

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=100.00  E-value=6e-45  Score=290.33  Aligned_cols=176  Identities=68%  Similarity=1.085  Sum_probs=162.2

Q ss_pred             CCCCCChhhhcchhhhHhhhccCCCCCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec--CCCC----CC
Q 046697            7 PPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH--GDGG----VG   80 (187)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~--G~g~----vG   80 (187)
                      .|+|||++||.++++.|.+.|.|.+.+++|.+.+..+|+||+++||++|+||++++.|+|.|++|++.  |+|+    +|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~s~~~~~I~Ap~d~VWalVrdF~~p~~w~p~V~s~~~~e~Gdg~~~~~vG   80 (189)
T 3oji_A            1 TPYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVG   80 (189)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHSCCCCC-CEEEEEEEEEESSCHHHHHHHHSCTTCGGGTCTTEEEEEECCC----CCCSTT
T ss_pred             CCcccCHHHHHHhHHHHHHhcccCCCCCccceeEEEEEcCCHHHHHHHHhCCCChhhCccccceEEEEecCCCCccCCCC
Confidence            37899999999999999999999999999999999999999999999999999999999999999998  7765    89


Q ss_pred             eEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccccCCCeeeEEEEEEecC--CC---ceEEEEEEEEeecCCCCC
Q 046697           81 SIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQK--GG---EIYTIVTESYVVDIPEGN  155 (187)
Q Consensus        81 ~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~--~g---~~~t~~~~~~~~d~p~~~  155 (187)
                      +||.|+|.+|.|...++|||+++|+++|+|+|+|++|++|+.+|+++++|.+.++  +|   .++|+++|++.+|+|++.
T Consensus        81 sVR~ltl~~G~P~~~i~ErL~~lDde~~~~sY~Iieg~~pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~  160 (189)
T 3oji_A           81 TIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGN  160 (189)
T ss_dssp             CEEEEEECSSSSBSEEEEEEEEEETTTTEEEEEEEECSBSSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTS
T ss_pred             cEEEEEecCCCcCceEEEEEEEEeccCCEEEEEEEecCCccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCC
Confidence            9999999998766799999999999999999999999999999999999999754  55   478999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          156 TVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       156 ~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      +++++..|++++|+.||++|++..|+.
T Consensus       161 t~e~~~~~v~~v~~~gL~~L~~~~e~~  187 (189)
T 3oji_A          161 TEEDTRMFVDTVVKSNLQNLAVISTAS  187 (189)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999974

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=1.5e-44  Score=292.62  Aligned_cols=180  Identities=53%  Similarity=0.909  Sum_probs=162.1

Q ss_pred             CCCCCCCChhhhcchhhhHhhhccCCCCCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CC-CCCCeE
Q 046697            5 QAPPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GD-GGVGSI   82 (187)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~-g~vG~v   82 (187)
                      ...|+|||.+||.+|.|.|.+.|+|+++|++|.++++.+|+||+++||++++||++++.|+|.|++|+++ |+ |++|+|
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~c~~~v~~~I~ApadkVW~lv~Df~~l~~w~p~V~s~e~~eGd~g~vGsV  102 (208)
T 3jrs_A           23 QTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCT  102 (208)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCTTCCCSTTCE
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHhccCCCCCeEeEEEEEEEeCCHHHHHHHHhCcCChhHccccceEEEEecCCCCCCCeE
Confidence            3568999999999999999999999999999999999999999999999999999998999999999998 87 689999


Q ss_pred             EEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccccCCCeeeEEEEEEecC-CCc--eEEEEEEEEeecCCCCCCHHH
Q 046697           83 REVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQK-GGE--IYTIVTESYVVDIPEGNTVED  159 (187)
Q Consensus        83 R~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~-~g~--~~t~~~~~~~~d~p~~~~~~~  159 (187)
                      |+|+|.+|.|..+++|||+++|+++|+|+|+|++|++|+++|+++++|.|..+ +++  .|+..|+++..|+|++.++++
T Consensus       103 R~lt~~~G~p~~~vkErL~~lDde~~~~sYsIieG~lpv~~Y~sti~V~p~~~g~~t~V~Wt~~fes~~~D~p~g~~~e~  182 (208)
T 3jrs_A          103 RDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEED  182 (208)
T ss_dssp             EEEEECTTSSCCEEEEEEEEEETTTTEEEEEEEESSSSCTTCEEEEEEEEEEC-----CEEEEEEEEEEEECCTTSCHHH
T ss_pred             EEEEecCCCccceEEEEEEEEeccCCEEEEEEeeCCcceeeEEEEEEEEEccCCCccEEEEEEEEEEccCCCCCCCCHHH
Confidence            99999999776799999999999999999999999999999999999999753 344  466667778889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc
Q 046697          160 TKMFVDTVVKLNLQKLGVVSMASLH  184 (187)
Q Consensus       160 ~~~~~~~~~~~gL~~Lk~~le~~~~  184 (187)
                      +..|++++|+.||++||+.+|++|+
T Consensus       183 a~~~~~~vy~~gL~~L~~~~e~~~~  207 (208)
T 3jrs_A          183 TRLFADTVIRLNLQKLASITEAMNR  207 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999986

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=100.00  E-value=2e-44  Score=292.33  Aligned_cols=180  Identities=57%  Similarity=0.947  Sum_probs=166.6

Q ss_pred             CCCCCCChhhhcchhhhHhhhccCCCCCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CC-CCCCeEE
Q 046697            6 APPQGLTPEEYAELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GD-GGVGSIR   83 (187)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~-g~vG~vR   83 (187)
                      ..|+|||.+||.+|.|.|.+.|+|+++|++|.++++.+|+||+++||++++||++++.|+|.|++|+++ |+ |++|+||
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~c~~~v~~~I~ApadkVW~lv~dF~~l~~w~p~V~s~e~~eGd~g~vGsVR   99 (211)
T 3k3k_A           20 HMPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTR   99 (211)
T ss_dssp             -CCSSCCHHHHHHHHHHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCSSEEEEECCTTCCCCTTCEE
T ss_pred             CCCCcCCHHHHHHHHHHHHHHhccCCCCCeEeEEEEEEEcCCHHHHHHHHhCcCChhHcCccceEEEEecCCCCCCCcEE
Confidence            568999999999999999999999999999999999999999999999999999999999999999998 76 5899999


Q ss_pred             EEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHH
Q 046697           84 EVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMF  163 (187)
Q Consensus        84 ~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~  163 (187)
                      +|+|.+|.|..+++|||+++|+++|+|+|+|++|++|+++|.++++|.|.++++..|+..|+++..|+|++.+++++..|
T Consensus       100 ~lt~~~G~p~~~vkErL~~lDd~~~~~sYsIieg~lpv~~Y~sti~V~p~~~ggV~Wt~~fes~~~D~P~g~~~e~a~~~  179 (211)
T 3k3k_A          100 DVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMF  179 (211)
T ss_dssp             EEEESSSSSCEEEEEEEEEEETTTTEEEEEEEEETTGGGTCEEEEEEEEEEETTEEEEEEEEEEEEECCSSSSSSCCHHH
T ss_pred             EEEecCCCccceEEEEEEEEeccCCEEEEEEeecCcceeEEEEEEEEEECCCCCEEEEEEEEEecCCCCCCCCHHHHHHH
Confidence            99999997777999999999999999999999999999999999999998644445666677777889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccC
Q 046697          164 VDTVVKLNLQKLGVVSMASLHG  185 (187)
Q Consensus       164 ~~~~~~~gL~~Lk~~le~~~~~  185 (187)
                      ++++|+.||++|++.+|++|+.
T Consensus       180 v~~iy~~gL~~L~~~~e~~~~~  201 (211)
T 3k3k_A          180 ADTVVKLNLQKLATVAEAMARN  201 (211)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999875

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=100.00  E-value=1.5e-41  Score=274.33  Aligned_cols=169  Identities=47%  Similarity=0.789  Sum_probs=156.6

Q ss_pred             cchhhhHhhhccCCCCCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCccee
Q 046697           17 AELRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTS   96 (187)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v   96 (187)
                      ..+++.|.++|+|+++|++|..+++.+|+||+++||++|+||+++..|+|.|++|++.|+|++|++|+|+|.+|.|..++
T Consensus        33 ~~~~~~~~~~~~h~p~~~k~~~~V~~~I~ApadkVW~lV~Df~~l~kW~P~V~s~eveGdg~vGsVR~vt~~~G~p~~~v  112 (205)
T 3oqu_A           33 LETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTVIGDPEIGSLREVNVKSGLPATTS  112 (205)
T ss_dssp             ---CCHHHHHTCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCSSCCTTCEEEEEECTTSSCSEE
T ss_pred             ccccHHHHHHHhcCCCCcEEEEEEeeEEcCCHHHHHHHHhCcCChhHcCccceEEEeeCCCCCCcEEEEEEcCCCccceE
Confidence            45789999999999999999999999999999999999999999889999999998888888999999999998666799


Q ss_pred             eEEEEEEeCCCCeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046697           97 TERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG  176 (187)
Q Consensus        97 ~ErL~~~D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk  176 (187)
                      +|||+++|+++|+|+|+|++|++|+++|.++++|.|.+++|.++|.++|++.+|+|++.+++++..+++++|+.||++|+
T Consensus       113 kErL~~lDde~~~~sYsIieG~lpv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~t~e~~~~~v~~v~~~gL~~L~  192 (205)
T 3oqu_A          113 TERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLA  192 (205)
T ss_dssp             EEEEEEEETTTTEEEEEEEEESSSCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCEEEEEEEecCcceeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999986555568889999999999999999999999999999999999


Q ss_pred             HHHhhcccC
Q 046697          177 VVSMASLHG  185 (187)
Q Consensus       177 ~~le~~~~~  185 (187)
                      +.+|++|++
T Consensus       193 ~~~e~~~~~  201 (205)
T 3oqu_A          193 DVSERLASQ  201 (205)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhhhc
Confidence            999999875

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=100.00  E-value=2.5e-40  Score=263.52  Aligned_cols=167  Identities=47%  Similarity=0.770  Sum_probs=152.4

Q ss_pred             hhhhHhhhccCCCCCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecC-CCCCCeEEEEEEecCCCcceee
Q 046697           19 LRPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG-DGGVGSIREVTVVSGLPASTST   97 (187)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G-~g~vG~vR~lt~~~g~~~~~v~   97 (187)
                      +++.|.+.|+|+++|++|.++++.+|+||+++||++++||+++..|+|.|++|.+.| +|++|++|+++|.+|.|...++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~v~~~I~Apa~~VW~~v~df~~l~~w~P~V~s~~~eG~~ggvGsvR~lt~~~G~p~~~vk   89 (183)
T 3rt2_A           10 ESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKST   89 (183)
T ss_dssp             CCHHHHHHSCCCCSTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEEESSSCCCTTCEEEEEECCSSTTCEEE
T ss_pred             chHHHHHhhccCCCCCceEEEEEEEEeCCHHHHHHHHhCcCchhhcCccceEEEeeCCCCCCCcEEEEEeCCCCccceEE
Confidence            689999999999999999999999999999999999999999989999999996668 6889999999999986666999


Q ss_pred             EEEEEEeCCCCeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 046697           98 ERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGV  177 (187)
Q Consensus        98 ErL~~~D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~  177 (187)
                      |||+++|+++|+|+|+|++|++|+++|.+++++.|.+.+|...|.+.|++.+++|++..++++..|++++|+.||++||+
T Consensus        90 ErL~~~D~~~~~~sY~Iieg~lp~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~~~e~~~~~~~~i~~~~L~~L~~  169 (183)
T 3rt2_A           90 EVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLAD  169 (183)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCSCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEecCCcceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999752332245666777789999999999999999999999999999


Q ss_pred             HHhhcccC
Q 046697          178 VSMASLHG  185 (187)
Q Consensus       178 ~le~~~~~  185 (187)
                      .+|+++++
T Consensus       170 ~~e~~~~~  177 (183)
T 3rt2_A          170 VTERLQAE  177 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhh
Confidence            99999875

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.97  E-value=7.8e-30  Score=195.58  Aligned_cols=141  Identities=20%  Similarity=0.329  Sum_probs=120.7

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEE
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVV  115 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vv  115 (187)
                      .+...+++|+||+++||++++||+++..|.|.|.+|++.+ |  |++|+++|.+|+   .++|||+++|+++++|+|+++
T Consensus         2 ~~v~~si~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~-G--G~vR~~~~~~G~---~~~Erl~~~D~~~~~~~y~iv   75 (146)
T 3f08_A            2 AHTTTSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTE-G--GRVRHLANPDGE---TIIERLEVFNDKERYYTYSIM   75 (146)
T ss_dssp             CEEEEEEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEG-G--GTEEEEECTTSC---EEEEEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEEEeCCHHHHHHHHhccccHHHhCCCeEEEEEeC-C--CeEEEEEeCCCC---EEEEEEEEEeCCCCEEEEEEe
Confidence            3567888999999999999999999878999999999982 2  899999998886   899999999999999999999


Q ss_pred             eccccCCCeeeEEEEEEe-cCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          116 GGEHRLNNYRSVTSVNEF-QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       116 eg~~p~~~y~a~~~v~~~-~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      +|++|+++|.+++++.|. +++|+.++|...+   + |++..++.++++++++|+.||++||+.+|.+-|.|
T Consensus        76 ~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~---~-p~g~~~~~~~~~~~~~~~~~L~~Lk~~~e~~~~~~  143 (146)
T 3f08_A           76 NAPFPVTNYLSTIQVKEGTESNTSLVEWSGTF---T-PVAVSDEEAINLVHGIYSDGLKALQHAFLDLEHHH  143 (146)
T ss_dssp             ECSSSEEEEEEEEEEEECSSTTCEEEEEEEEE---E-ESSSCHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             cCCCceeEEEEEEEEEEecCCCcEEEEEEEEE---E-eCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            999889999999999993 4466777776654   4 47778889999999999999999999999997765

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.95  E-value=3.3e-27  Score=183.86  Aligned_cols=136  Identities=14%  Similarity=0.159  Sum_probs=115.2

Q ss_pred             ceeEEEEEEEcCChHHHHHHhhcCCCCccccccceee-Eec-CC--CCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeE
Q 046697           35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSC-NMH-GD--GGVGSIREVTVVSGLPASTSTERLEILDDEKHIL  110 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~-~~~-G~--g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~  110 (187)
                      |.+...+++|+||+++||++++||+++ .|.|.+.+| ++. |+  +++|++|.+    |+   .++|||+++|+++++|
T Consensus         1 M~~v~~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~----gg---~v~Erl~~~D~~~~~~   72 (160)
T 3p51_A            1 MPKVYNSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKKVGGGGGYSVGARRLL----NG---EFLDTLIAYSEIERRI   72 (160)
T ss_dssp             -CEEEEEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEEESSCCTTCTTCEEEE----TT---TEEEEEEEEETTTTEE
T ss_pred             CCEEEEEEEECCCHHHHHHHHhCcCCC-eEccCceEEEEEEecCCCCCCCCEEEE----CC---EEEEEEEEEcCCCcEE
Confidence            345678889999999999999999999 999988887 887 75  479999998    33   7899999999999999


Q ss_pred             EEEEEecccc-----CCCeeeEEEEEEec-CCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046697          111 SFRVVGGEHR-----LNNYRSVTSVNEFQ-KGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLH  184 (187)
Q Consensus       111 sY~vveg~~p-----~~~y~a~~~v~~~~-~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~  184 (187)
                      +|+|++|++|     +++|.+++++.|.+ ++|+.++|...+   +++.    +.++.+++++|+.||++||+.+|+..+
T Consensus        73 sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~---~~~~----~~~~~~~~~~~~~~L~~Lk~~~e~~~~  145 (160)
T 3p51_A           73 MYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSW---ESAS----TEAVEYMNTVYRSLLADLAAEFTSESR  145 (160)
T ss_dssp             EEEEEECSTTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEE---EESC----SHHHHHHHHHHHHHHHHHHHHSCTTTC
T ss_pred             EEEEecCCCcccccceeEEEEEEEEEEecCCCCEEEEEEEEE---EeCH----HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999998     89999999999985 455667766554   4332    277889999999999999999998765


Q ss_pred             C
Q 046697          185 G  185 (187)
Q Consensus       185 ~  185 (187)
                      .
T Consensus       146 ~  146 (160)
T 3p51_A          146 R  146 (160)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.93  E-value=7.9e-26  Score=172.27  Aligned_cols=143  Identities=19%  Similarity=0.175  Sum_probs=121.1

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CC-CCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GD-GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~-g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      ....+++|+||+++||++++||.+...|.|.+++|++. |+ +++|++|.+++.+|.   .++|+|+++|+.+++++|++
T Consensus         3 ~v~~si~I~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g~~~~~G~~r~~~~~~G~---~~~e~i~~~d~~~~~~~~~~   79 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTEE---ELVERLVERDESARRLVYTM   79 (151)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTSGGGGGTCTTCCCEEEESSCTTSTTCEEEESSSSSS---CEEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEEecCCHHHHHHHHhCcCcHHHhcCCceEEEEECCCCCCCCeEEEEEeCCCC---EEEEEEEEEeCCCCEEEEEE
Confidence            56678899999999999999999988899999999998 65 679999999997775   79999999999999999999


Q ss_pred             EeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          115 VGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDI-PEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       115 veg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~-p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      ++|++|+..|.+++++.+.+++|+.++|...+   ++ |.+.....+. +++++|+.||++||+.+|+.-|.|
T Consensus        80 ~~g~~~~~~~~~~~~l~~~~~~gt~v~w~~~f---~~~p~~~~~~~~~-~~~~~~~~~L~~Lk~~~e~~~~~~  148 (151)
T 2le1_A           80 PDPPFPITNHRAVLEVVPRDDRHCTVVWTAMF---DCSPETARELESV-IGDGVFAVGLNALAERYGRLEHHH  148 (151)
T ss_dssp             EECSSSEEEEEEEEEEEESSSSCEEEEEEEEE---EECHHHHHHHHHH-TTTTHHHHHHHHHHHHTTTTSCCC
T ss_pred             ecCCCCceeEEEEEEEEECCCCcEEEEEEEEE---EecCCCCCHHHHH-HHHHHHHHHHHHHHHHhhcccccc
Confidence            99988889999999998864466777776543   43 3444455556 788999999999999999987766

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=99.93  E-value=7.5e-25  Score=169.70  Aligned_cols=110  Identities=19%  Similarity=0.357  Sum_probs=94.1

Q ss_pred             eEEEEEEEcCChHHHHHH-hhcCCCC-ccccc-cceeeEec-CCCCCCeEEEEEEecC-CCcceeeEEEEEEeCCCCeEE
Q 046697           37 VSLITQRIDAPAHVVWPF-VRRFDNP-QKYKH-FIKSCNMH-GDGGVGSIREVTVVSG-LPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~v-i~df~~~-~~w~p-~v~s~~~~-G~g~vG~vR~lt~~~g-~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      +...+++|+|||++||++ ++||+++ ..|.| .|++|+++ |+|++|+||.|+|.+| .+ +.++|||+++|+++|+|+
T Consensus         4 ~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~g~~~-~~~kErl~~iD~~~~~~~   82 (155)
T 2flh_A            4 EFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP-SYQREEITEFDESSHEIG   82 (155)
T ss_dssp             EEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEECTTSSS-CEEEEEEEEEETTTTEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCCCCCCeEEEEEeeCCCCC-cEEEEEEEEEeCCCCEEE
Confidence            445778999999999999 7999994 55665 78999986 9989999999999988 55 699999999999999999


Q ss_pred             EEEEeccc---cCCCeeeEEEEEEecCCCceEEEEEEEE
Q 046697          112 FRVVGGEH---RLNNYRSVTSVNEFQKGGEIYTIVTESY  147 (187)
Q Consensus       112 Y~vveg~~---p~~~y~a~~~v~~~~~~g~~~t~~~~~~  147 (187)
                      |+|++|++   ++++|.+++++.+.+++|+.++|...+.
T Consensus        83 y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~  121 (155)
T 2flh_A           83 LQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYD  121 (155)
T ss_dssp             EEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEE
Confidence            99999986   6899999999999865567677766554

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=99.93  E-value=6.8e-25  Score=170.74  Aligned_cols=113  Identities=21%  Similarity=0.275  Sum_probs=95.3

Q ss_pred             eEEEEEEEcCChHHHHHHh-hcCCC-Cccccc-cceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEE
Q 046697           37 VSLITQRIDAPAHVVWPFV-RRFDN-PQKYKH-FIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSF  112 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi-~df~~-~~~w~p-~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY  112 (187)
                      +.+.+++|+|||++||+++ +||++ ...|.| .|++|+++ |+|++|+||+|+|.+|++.+.++|||+++|+++|+|+|
T Consensus         4 ~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~~~~~~kErl~~iD~~~~~~~y   83 (159)
T 4a8u_A            4 NYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSY   83 (159)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSCSEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCCCceEEEEEEecCCCccEEEEEEEEEccccCEEEE
Confidence            3456789999999999998 99999 345555 79999987 99889999999999998778999999999999999999


Q ss_pred             EEEecccc---CCCeeeEEEEEEecCCCceEEEEEEEEee
Q 046697          113 RVVGGEHR---LNNYRSVTSVNEFQKGGEIYTIVTESYVV  149 (187)
Q Consensus       113 ~vveg~~p---~~~y~a~~~v~~~~~~g~~~t~~~~~~~~  149 (187)
                      +|++|+++   +++|.+++++.+.+++|+.++|...+...
T Consensus        84 ~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~  123 (159)
T 4a8u_A           84 SVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTK  123 (159)
T ss_dssp             EEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred             EEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEEC
Confidence            99999864   57888889988876556777777665443

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=99.93  E-value=3.8e-24  Score=165.90  Aligned_cols=140  Identities=17%  Similarity=0.153  Sum_probs=107.2

Q ss_pred             EEEEEEEcCChHHHHHHhh-cCCC-CccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           38 SLITQRIDAPAHVVWPFVR-RFDN-PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~-df~~-~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      ...+++|++||++||++++ ||++ ...|.+.|++|+++ |+|++|+||.|+|.+|.+.+.++|||+++|+++|+|+|++
T Consensus         5 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~~~y~i   84 (157)
T 1tw0_A            5 FRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLGYDYSI   84 (157)
T ss_dssp             EEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCCCCCeEEEEEeeCCCccceEEEEEEEEeccCCEEEEEE
Confidence            4567899999999999999 9996 34555999999988 9988999999999988766789999999999999999999


Q ss_pred             Eecccc---CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          115 VGGEHR---LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       115 veg~~p---~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      ++|++.   +++|.+++++.+.+++|+.++|...+.... .....++..+ .....+...++.|.+.|
T Consensus        85 ieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~-~~~~~~~~~~-~~~~~~~~~~k~ie~yl  150 (157)
T 1tw0_A           85 VGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKG-DAPLSDAVRD-DALAKGAGFFKAIEGYV  150 (157)
T ss_dssp             EECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEEST-TCCCCHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             EecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCCCHHHHH-HHHHHHHHHHHHHHHHH
Confidence            999852   567888888888754567777776654432 2222333333 33445566666666655

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=99.92  E-value=1.5e-24  Score=168.40  Aligned_cols=140  Identities=18%  Similarity=0.195  Sum_probs=107.8

Q ss_pred             EEEEEEEcCChHHHHHHhh-cCCC-Cccccc-cceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           38 SLITQRIDAPAHVVWPFVR-RFDN-PQKYKH-FIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~-df~~-~~~w~p-~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ...+++|+||+++||++++ ||++ ...|.| .|++|+++ |+|++|++|.|+|.+|.+.+.++|||+++|+++|+|+|+
T Consensus         5 ~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~G~~~~~~kErl~~~D~~~~~~~y~   84 (159)
T 1e09_A            5 YESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYT   84 (159)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEecCCCCceEEEEEEEEEcCCCCEEEEE
Confidence            4567899999999999999 9986 456776 89999987 998899999999998866578999999999999999999


Q ss_pred             EEeccc---cCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          114 VVGGEH---RLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       114 vveg~~---p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      +++|++   ++++|.+++++.+.+++|+.++|..++.... .....++..+ .....+...++.|.+.|
T Consensus        85 iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~-~~~~~~~~~~-~~~~~~~~~~k~ie~yl  151 (159)
T 1e09_A           85 LIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKG-NVEIKEEHVK-AGKEKASNLFKLIETYL  151 (159)
T ss_dssp             ECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECS-SCCCCHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             EEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCCCHHHHH-HHHHHHHHHHHHHHHHH
Confidence            999986   5788889998888754567777776654432 1222333332 33445555566666655

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=99.92  E-value=3.4e-24  Score=165.82  Aligned_cols=139  Identities=15%  Similarity=0.134  Sum_probs=106.7

Q ss_pred             EEEEEEEcCChHHHHHHhh-cCCC-CccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           38 SLITQRIDAPAHVVWPFVR-RFDN-PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~-df~~-~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      ...+++|++||++||++++ ||++ ...|.+.|++|+++ |+|++|+||.|+|.+|.+.+.++|||+++|+++|+|+|++
T Consensus         5 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~~~y~i   84 (155)
T 1icx_A            5 FENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSI   84 (155)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCCCCCeEEEEEEecCCcceeEEEEEEEEeccCCEEEEEE
Confidence            4567899999999999999 9986 23455999999988 9988999999999988766789999999999999999999


Q ss_pred             Eecccc---CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          115 VGGEHR---LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       115 veg~~p---~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      ++|++.   +++|.+++++.+.+++|+.++|...+..... . ..++..+ ....++...++.|.+.|
T Consensus        85 ieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~-~-~~~~~~~-~~~~~~~~~~k~ie~yl  149 (155)
T 1icx_A           85 IGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGD-V-LSETVRD-QAKFKGLGLFKAIEGYV  149 (155)
T ss_dssp             EEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSS-S-CCHHHHT-THHHHHHHHHHHHHHHH
T ss_pred             EecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCC-C-CCHHHHH-HHHHHHHHHHHHHHHHH
Confidence            999852   5678888888887545677777766544322 2 3333332 33445666677776665

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=99.92  E-value=7.2e-24  Score=164.44  Aligned_cols=141  Identities=16%  Similarity=0.175  Sum_probs=107.4

Q ss_pred             eEEEEEEEcCChHHHHHHhh-cCCC-CccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           37 VSLITQRIDAPAHVVWPFVR-RFDN-PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~-df~~-~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      +...+++|++||++||++++ ||++ ...|.+.|++|+++ |+|++|+||.|+|.+|.+.+.++|||+++|+++|+|+|+
T Consensus         5 ~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdgg~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   84 (158)
T 2qim_A            5 TFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANLGYNYS   84 (158)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCCCCCeEEEEEEcCCCcceeEEEEEEEEecCCCEEEEE
Confidence            44567899999999999999 9986 23455999999988 998899999999998876678999999999999999999


Q ss_pred             EEecccc---CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          114 VVGGEHR---LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       114 vveg~~p---~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      +++|++.   +++|.+++++.+.+++|+.++|..++.... .....++..+ .....+...++.|.+.|
T Consensus        85 iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~-~~~~~~~~~~-~~~~~~~~~~k~ie~yl  151 (158)
T 2qim_A           85 IVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKG-DAQPNEEEGK-AAKARGDAFFKAIESYL  151 (158)
T ss_dssp             EEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEEST-TCCCCHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCCCHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999862   567888888888754567777776654432 2222333333 33445566666666665

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=99.92  E-value=6.4e-24  Score=166.26  Aligned_cols=111  Identities=18%  Similarity=0.265  Sum_probs=92.9

Q ss_pred             eEEEEEEEcCChHHHHHH-hhcCCCC-ccccc-cceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEE
Q 046697           37 VSLITQRIDAPAHVVWPF-VRRFDNP-QKYKH-FIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSF  112 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~v-i~df~~~-~~w~p-~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY  112 (187)
                      +.+.+++|+|||++||++ ++||+++ ..|+| .|++|+++ |+|++|+||+|+|.+|++.+.++|||+++|+++|+|+|
T Consensus        11 ~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~iD~~~~~~~Y   90 (165)
T 3ie5_A           11 TIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDEIDAANFYCKY   90 (165)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTSSCCEEEEEEEEEEGGGTEEEE
T ss_pred             EEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCCCCCeEEEEEecCCCCCceEEEEEEEEchhcCEEEE
Confidence            455677999999999999 6999994 56776 69999986 99999999999999998778999999999999999999


Q ss_pred             EEEecccc---CCCeeeEEEEEEecCCCceEEEEEEEEe
Q 046697          113 RVVGGEHR---LNNYRSVTSVNEFQKGGEIYTIVTESYV  148 (187)
Q Consensus       113 ~vveg~~p---~~~y~a~~~v~~~~~~g~~~t~~~~~~~  148 (187)
                      +|++|+++   +++|++++++. .+++|+.++|...+..
T Consensus        91 ~iieG~~l~~~~~~y~~~i~v~-~~~ggs~vkwt~~y~~  128 (165)
T 3ie5_A           91 TLFEGDVLRDNIEKVVYEVKLE-AVGGGSKGKITVTYHP  128 (165)
T ss_dssp             EEEEEGGGTTTEEEEEEEEEEE-EETTEEEEEEEEEEEE
T ss_pred             EEecCCCCccceEEEEEEEEEE-eCCCceEEEEEEEEEE
Confidence            99999853   78888888887 4435566666666543

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=99.91  E-value=1.9e-24  Score=174.10  Aligned_cols=113  Identities=21%  Similarity=0.295  Sum_probs=95.4

Q ss_pred             eEEEEEEEcCChHHHHHH-hh-cCCCC-ccccc-cceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEE
Q 046697           37 VSLITQRIDAPAHVVWPF-VR-RFDNP-QKYKH-FIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSF  112 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~v-i~-df~~~-~~w~p-~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY  112 (187)
                      ..+.+++|+|||++||++ ++ ||+++ ..|.| .|++|+++|+|++|+||.|+|.+|++.++++|||+++|+++|+|+|
T Consensus        30 ~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~GdGg~GsIR~lt~~~G~~~~~vkErle~iDde~~~~sY  109 (201)
T 2vq5_A           30 VIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGGVGTILDMTFVPGEFPHEYKEKFILVDNEHRLKKV  109 (201)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEESSSSTTCEEEEECCTTCSSCEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEecCCCCCeEEEEEecCCCcccEEEEEEEEEchhhCEEEE
Confidence            344788999999999999 57 99994 46776 6799997798899999999999987767999999999999999999


Q ss_pred             EEEeccc---cCCCeeeEEEEEEecCCCceEEEEEEEEee
Q 046697          113 RVVGGEH---RLNNYRSVTSVNEFQKGGEIYTIVTESYVV  149 (187)
Q Consensus       113 ~vveg~~---p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~  149 (187)
                      +|+||++   ++++|.+++++.+.+++|+.++|..++...
T Consensus       110 siieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~  149 (201)
T 2vq5_A          110 QMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVK  149 (201)
T ss_dssp             EEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEEC
Confidence            9999984   578899999999876556777777666544

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.91  E-value=1.4e-23  Score=164.27  Aligned_cols=114  Identities=25%  Similarity=0.318  Sum_probs=94.0

Q ss_pred             eeEEEEEEEcCChHHHHHHh-hcCCCCccccc-cceeeEec-CC-CCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEE
Q 046697           36 CVSLITQRIDAPAHVVWPFV-RRFDNPQKYKH-FIKSCNMH-GD-GGVGSIREVTVVSGLPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi-~df~~~~~w~p-~v~s~~~~-G~-g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      -+...+++|+|||++||+++ +||+.+..|.| .|++|+++ |+ |++|+||.|+|..|++.+.++|||+++|+++++|+
T Consensus        17 ~k~~~ev~i~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~~~~kErl~~iD~~~~~~~   96 (166)
T 2i9y_A           17 GKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLIT   96 (166)
T ss_dssp             EEEEEEEEESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEEEEEEEEEEEEETTTTEEE
T ss_pred             cEEEEEEEecCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEecCCCceEEEEEEEEEeccCcEEE
Confidence            34456779999999999995 58888667877 99999988 98 89999999999988777789999999999999999


Q ss_pred             EEEEeccc--cCCCeeeEEEEEEecC-CCceEEEEEEEEee
Q 046697          112 FRVVGGEH--RLNNYRSVTSVNEFQK-GGEIYTIVTESYVV  149 (187)
Q Consensus       112 Y~vveg~~--p~~~y~a~~~v~~~~~-~g~~~t~~~~~~~~  149 (187)
                      |+|++|++  ++++|.+++++.+.++ +|+.++|...+...
T Consensus        97 y~iieGd~~~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~  137 (166)
T 2i9y_A           97 FRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKI  137 (166)
T ss_dssp             EEECCTTGGGTEEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             EEEEeCCCCCCeeEEEEEEEEEECCCCCCcEEEEEEEEEEC
Confidence            99999997  3567778888888643 35666666655433

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=99.90  E-value=2.6e-23  Score=161.09  Aligned_cols=108  Identities=23%  Similarity=0.334  Sum_probs=88.7

Q ss_pred             EEEEEEEcCChHHHHHH-hhcCCC--CccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           38 SLITQRIDAPAHVVWPF-VRRFDN--PQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        38 ~~v~~~I~apae~VW~v-i~df~~--~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      .+.++++++||+++|++ +.|+++  |+.+|..|++++++|+|++|+||+|+|..|++.+.++|||+++|+++|+|+|+|
T Consensus         6 ~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~veGdg~~Gsir~~t~~~g~~~~~~kErle~iD~~~~~~~y~i   85 (154)
T 2wql_A            6 HSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEVKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEALSYDSTV   85 (154)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEEESSSSTTCEEEEECCTTCSCCEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEEEECCCCCCeEEEEEEcCCCCceEEEEEEEEEehhhCEEEEEE
Confidence            44677999999999976 689997  677888899999779999999999999998888899999999999999999999


Q ss_pred             Eecccc---CCCeeeEEEEEEecCCCceEEEEEE
Q 046697          115 VGGEHR---LNNYRSVTSVNEFQKGGEIYTIVTE  145 (187)
Q Consensus       115 veg~~p---~~~y~a~~~v~~~~~~g~~~t~~~~  145 (187)
                      +||+..   ++.|..++++.+.+++|+.+.|...
T Consensus        86 ieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~  119 (154)
T 2wql_A           86 IDGDILLGFIESIETHMVVVPTADGGSITKTTAI  119 (154)
T ss_dssp             EESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EeccccccceEEEEEEEEEeeCCCCcEEEEEEEE
Confidence            999863   4556666777676545554445444

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.71  E-value=1.9e-16  Score=122.26  Aligned_cols=145  Identities=8%  Similarity=0.003  Sum_probs=107.3

Q ss_pred             hccCCCCCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeC
Q 046697           26 YHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDD  105 (187)
Q Consensus        26 ~~~~~~~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~  105 (187)
                      -++|++++.+..  .+++|+||+++||+++.||.+...|.|.|.++++.|.-.+|+.+++++..+.   .+..+|+++|+
T Consensus        10 ~~~~g~~~~~i~--~si~I~Appe~VW~~ltD~~~~~~W~p~v~~~~~~G~~~~G~~~~~~~~~~~---~~~~~v~~~~p   84 (155)
T 3ijt_A           10 GQQMGRGSMKFS--FELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMP---ELAFTLVEVRE   84 (155)
T ss_dssp             -----CCCEEEE--EEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETTSC---CEEEEECCCBT
T ss_pred             ccccCCCcEEEE--EEEEEcCCHHHHHHHHhCcccccccchhhEeeeccCCCCCCCEEEEEeCCCC---cEEEEEEEEeC
Confidence            456888877766  5569999999999999999998799999999988887568999988887665   78899999987


Q ss_pred             CCCeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          106 EKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEG-NTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       106 ~~~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~-~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      . ++++|+..   +|...|.....+.+.+++++.++|...+   ..+.. .....+.+.+...+..+|++||+.+|+.
T Consensus        85 ~-~~~~~~~~---~p~~~~~~~h~l~p~~~ggTrvt~~~~~---~G~~~~~~~~~~~~~i~~~~~~~l~~LK~~aE~~  155 (155)
T 3ijt_A           85 N-QCFSDLTA---TPFGNVLFEHEILENPDGTISLRHSVSL---TDSDTTEEALAFLKQIFADVPESVGKLKQILETV  155 (155)
T ss_dssp             T-TEEEEEEE---ETTEEEEEEEEEEECTTSCEEEEEEEEE---SCCSCCHHHHHHHHHHHTTHHHHHHHHHHHHTC-
T ss_pred             C-cEEEEEEe---cCCeEEEEEEEEEEcCCCcEEEEEEEEE---ECCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            5 67888643   3455677777787775566778876654   22221 1122355677888899999999999863

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.64  E-value=1.1e-14  Score=112.83  Aligned_cols=142  Identities=9%  Similarity=-0.014  Sum_probs=107.3

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEE--EecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVT--VVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt--~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      ...++.|++|+++||++|.|+.+...|.|.+.++++. ++| .+.+-+++  ..-++.......+ ..+|+.+++++|++
T Consensus         5 v~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~-~~~~~rl~~~~~~~G~~~~~ts~-~~~d~~~~~I~~~~   82 (159)
T 3tl1_A            5 TDNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDD-DKVTFRLTMHPDADGKVWSWVSE-RVADPVTRTVRAQR   82 (159)
T ss_dssp             EEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECS-SEEEEEEEECCCTTSCCCEEEEE-EEEETTTTEEEEEE
T ss_pred             eEEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCC-CEEEEEEEEEeccCceEEEEEEE-EEEcCCCCEEEEEE
Confidence            4567899999999999999999966899999999987 443 22222233  3333322222233 35899999999998


Q ss_pred             EeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046697          115 VGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLH  184 (187)
Q Consensus       115 veg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~  184 (187)
                      ++++ |++.|.+...+.+.++ |++++|...| .+.+..+...+.+.+.++..+...|++||+.+|+.+.
T Consensus        83 ~~~g-Pf~~l~g~W~f~p~~~-gt~V~~~~df-~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E~~~~  149 (159)
T 3tl1_A           83 VETG-PFQYMNIVWEYAETAE-GTVMRWTQDF-AMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQAAG  149 (159)
T ss_dssp             SSCT-TEEEEEEEEEEEEETT-EEEEEEEEEE-EECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCC-ChhhccCEEEEEECCC-CEEEEEEEEE-EecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Confidence            8433 5899999999999864 7888888765 4454566777778889999999999999999998764

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.63  E-value=7e-15  Score=114.98  Aligned_cols=140  Identities=11%  Similarity=0.102  Sum_probs=107.3

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEe-----cCCCcceeeEEEEEEeCCCCeE
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVV-----SGLPASTSTERLEILDDEKHIL  110 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~-----~g~~~~~v~ErL~~~D~~~~~~  110 (187)
                      +...++.|+||+++||+++.||.+...|.|.+.++++. +++  +.+| +++.     +|...++..++  .+|+..+++
T Consensus         4 ~v~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~~~--~~~~-~~l~~~~~~~G~~~~~ts~~--~~d~~~~~I   78 (169)
T 3tvq_A            4 RTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDG--DGFD-FRLKTRPDANGRVWEWVSHR--VPDKGSRTV   78 (169)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEEET--TEEE-EEEEECCCTTSCCCEEEEEE--EEEGGGTEE
T ss_pred             eEEEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEecCC--CEEE-EEEEEEecCCCeEEEEEEEE--EEcCCCcEE
Confidence            45678899999999999999999966899999999988 433  2333 3332     23222233333  478888999


Q ss_pred             EEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046697          111 SFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLH  184 (187)
Q Consensus       111 sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~  184 (187)
                      +|+.++++ |++.|.++..+.+.+ +|++++|...+ .+.+..+...+.+.+.++..+..+|++||+.+|+.++
T Consensus        79 ~~~~l~~g-Pf~~~~g~W~f~p~~-~gt~V~~~~df-~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE~~~~  149 (169)
T 3tvq_A           79 RAHRVETG-PFAYMNLHWTYRAVA-GGTEMRWVQEF-DMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHR  149 (169)
T ss_dssp             EEEESSCT-TEEEEEEEEEEEEET-TEEEEEEEEEE-EECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCC-ChhheeeEEEEEECC-CCEEEEEEEEE-EecCCCcccHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Confidence            99976544 689999999999986 44888887665 4455566778888999999999999999999998764

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.55  E-value=3.7e-13  Score=98.72  Aligned_cols=144  Identities=16%  Similarity=0.087  Sum_probs=100.0

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEE
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVV  115 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vv  115 (187)
                      .....+++|+||+++||+++.|+.+...|.|.+.++++.+.+..|....+++..++.......++.. ++.++++.|+++
T Consensus         2 ~~~~~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~~~~~i~~~~~   80 (147)
T 2d4r_A            2 PEVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEEEW-DDENLRNRFFSP   80 (147)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEE-ETTTTEEEEEEE
T ss_pred             CeEEEEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCccEEEEEEEeCCceEEEEEEEEE-cCCCcEEEEEec
Confidence            3456788999999999999999999778999999988873222355656666543311234555554 456799999999


Q ss_pred             eccccCCCeeeEEEEEEecCCCceEEEEEEEEeec-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697          116 GGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVD-IPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASL  183 (187)
Q Consensus       116 eg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d-~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~  183 (187)
                      +|++  ..+.++..+.+.+ +|+.++|...+.... .+...........++..++..|++||+.+|+.+
T Consensus        81 ~g~~--~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~~  146 (147)
T 2d4r_A           81 EGDF--DRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAAS  146 (147)
T ss_dssp             EESC--SEEEEEEEEEECS-SSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCh--hheEEEEEEEECC-CCcEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8854  6678888888875 457777765532111 122333444556677888999999999999864

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.54  E-value=1.3e-13  Score=107.11  Aligned_cols=149  Identities=12%  Similarity=0.069  Sum_probs=102.1

Q ss_pred             CceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      .|.+...++.|++|+++||+++.||.+...|.|.+.++++.+.+..+..-++++..++.......++ .+|+.++++.|+
T Consensus         3 ~M~~v~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~~~~~~~~~~~G~~~~~~s~~-~~~~~~~~i~~~   81 (172)
T 3tfz_A            3 HMRHVEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGYQVVRLHVDVAGEINTWTSRR-DLDPARRVIAYR   81 (172)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-EEETTTTEEEEE
T ss_pred             CCcEEEEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCEEEEEEEEecCCEEEEEEEEE-EEeCCCCEEEEE
Confidence            4677888999999999999999999997789999999999832111222234444343111223333 478888999999


Q ss_pred             EEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCC-----C--CCHH----HHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          114 VVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPE-----G--NTVE----DTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       114 vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~-----~--~~~~----~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      +++++.|+..+.+...+.+.++++++++|...+ .+..+.     +  ....    ...+.++.-....|+.||+.+|+.
T Consensus        82 ~~~~~gpf~~~~g~w~f~~~~~~~t~V~~~~~~-~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~~aE~~  160 (172)
T 3tfz_A           82 QLETAPIVGHMSGEWRAFTLDAERTQLVLTHDF-VTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERR  160 (172)
T ss_dssp             EEECCTTEEEEEEEEEEEEEETTEEEEEEEEEE-EECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCCChhhcEEEEEEEECCCCcEEEEEEEEE-EEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            998766688999999998886566888877653 222111     0  1112    234455555667899999999986


Q ss_pred             cc
Q 046697          183 LH  184 (187)
Q Consensus       183 ~~  184 (187)
                      ++
T Consensus       161 ~~  162 (172)
T 3tfz_A          161 VR  162 (172)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.46  E-value=1.8e-12  Score=96.16  Aligned_cols=85  Identities=15%  Similarity=0.202  Sum_probs=64.8

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      +...+++|++||++||+++++|+.+. |.+            +          |.   .   ||+++|+++++|+|++++
T Consensus         6 ~~~~e~~i~~~a~k~w~~~~~~~~~p-~g~------------~----------G~---~---~ie~iD~~~~~~~y~iie   56 (122)
T 1vjh_A            6 ALSVKFDVKCPADKFFSAFVEDTNRP-FEK------------N----------GK---T---EIEAVDLVKKTMTIQMSG   56 (122)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHTTSC-SST------------T----------CE---E---EEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEEecCCHHHHHHHHhhcccCC-ccC------------C----------Cc---c---EEEEEecccCEEEEEEEE
Confidence            34567899999999999999995543 422            1          32   2   999999999999999999


Q ss_pred             cccc--CCCeeeEEEEEEec-CCCceEEEEEEEEeec
Q 046697          117 GEHR--LNNYRSVTSVNEFQ-KGGEIYTIVTESYVVD  150 (187)
Q Consensus       117 g~~p--~~~y~a~~~v~~~~-~~g~~~t~~~~~~~~d  150 (187)
                      |+++  ++.|.+++++.+.. ++|+.++|...+...+
T Consensus        57 Gd~~~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~   93 (122)
T 1vjh_A           57 SEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVH   93 (122)
T ss_dssp             TTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESS
T ss_pred             ccccccEEEEEEEEEEEEecCCCCeEEEEEEEEEECC
Confidence            9974  57888888888864 4567777776665443

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.23  E-value=3.5e-10  Score=84.97  Aligned_cols=140  Identities=11%  Similarity=0.052  Sum_probs=94.7

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCC---CC-CCeEEEEEEecCCCcceeeEEEEEEeCCCCeEE
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGD---GG-VGSIREVTVVSGLPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~---g~-vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      .....++.|++|+++||+++.|+.+...|.|.+.++++.+.   |+ .+....++++-++-......|+. +|+.++++.
T Consensus         2 ~~~~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~i~   80 (148)
T 1t17_A            2 HRHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVR-RDKDARSID   80 (148)
T ss_dssp             CEEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEE-EETTTCEEE
T ss_pred             CEEEEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEEEEecceeEEEEEEEE-EcCCCcEEE
Confidence            34567889999999999999999997789999999988732   11 23334455544432234556665 577667999


Q ss_pred             EEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          112 FRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       112 Y~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      +++++|+  +..+.+...+.+.+ +|+.+++...   ++.+.+.....+..+++...+.-+++++++++++
T Consensus        81 ~~~~~G~--f~~~~g~w~f~~~~-~gt~v~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~f~~r~~~~  145 (148)
T 1t17_A           81 VSLLYGP--FKRLNNGWRFMPEG-DATRVEFVIE---FAFKSALLDAMLAANVDRAAGKLIACFEARAQQL  145 (148)
T ss_dssp             EEESSTT--SSCEEEEEEEEEET-TEEEEEEEEE---ECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCC--hhccEEEEEEEECC-CCeEEEEEEE---EEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999984  67889999998876 3476766544   3444333334555555666666666666666643

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.21  E-value=3.6e-10  Score=85.76  Aligned_cols=144  Identities=10%  Similarity=-0.022  Sum_probs=92.1

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCccee--eEEEEEEeCCCCeEEEEE
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTS--TERLEILDDEKHILSFRV  114 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v--~ErL~~~D~~~~~~sY~v  114 (187)
                      ....+..|+||+++||+++.|+.....|.|.+.+++..++|  +....+++..|+....+  +-++.++|+. ++++++.
T Consensus         4 ~i~~~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~   80 (162)
T 2pcs_A            4 NGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGED--KYKADLQIGIAAVKGKYDAIIEVTDIKPP-YHYKLLV   80 (162)
T ss_dssp             EEEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETT--EEEEEEEECCGGGCEEEEEEEEEEEEETT-TEEEEEE
T ss_pred             EEeeEEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeCCC--eEEEEEEEEeeeEEEEEEEEEEEEecCCC-cEEEEEE
Confidence            35567899999999999999999977888999888886332  22233444433211133  3366677764 6777776


Q ss_pred             Ee-ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697          115 VG-GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASL  183 (187)
Q Consensus       115 ve-g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~  183 (187)
                      .. |..+...+..++.+.+..++|+.++|..++.....-..........+.+.+++..+++|++.+|+..
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~~  150 (162)
T 2pcs_A           81 NGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKSK  150 (162)
T ss_dssp             EEEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EecCCCccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            53 2232345677777777544567788765532221112233445566777888888999999998743

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.20  E-value=7.1e-10  Score=84.35  Aligned_cols=140  Identities=14%  Similarity=0.088  Sum_probs=93.3

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEec--CCCcceeeEEEEEEeCCCCeEEEE
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVS--GLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~--g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      .....++.|++|+++||+++.|+.+...|.|.+.+++..++   |..+ +++..  |.......-++.++++ ++++.|+
T Consensus         4 ~~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~~---~~~~-~~~~~~~G~~~~~~~~~v~e~~p-~~~i~~~   78 (155)
T 3ggn_A            4 TVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDD---KRSR-WTVEAPAPLGTVSWEAELTADEP-GKRIAWR   78 (155)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCGGGHHHHSTTCCEEEECSS---SEEE-EEEECCTTTCEEEEEEEEEEEET-TTEEEEE
T ss_pred             cEEEEEEEEcCCHHHHHHHHhCHHHhHHHhhhceEEEEecC---CeeE-EEEEecCCcceEEEEEEEEEecC-CCEEEEE
Confidence            35567889999999999999999997789999999988743   2222 33432  3122245667777655 6899999


Q ss_pred             EEeccccCCCeeeEEEEEEec-CCCceEEEEEEEEeecCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 046697          114 VVGGEHRLNNYRSVTSVNEFQ-KGGEIYTIVTESYVVDIPEGNTV----EDTKMFVDTVVKLNLQKLGVVSMASLHG  185 (187)
Q Consensus       114 vveg~~p~~~y~a~~~v~~~~-~~g~~~t~~~~~~~~d~p~~~~~----~~~~~~~~~~~~~gL~~Lk~~le~~~~~  185 (187)
                      .++|+.  ..+.+.+.+.+.+ ++|+++++...+   ++|.+...    ..+..+.+.++++.|+.+|+.+|.-...
T Consensus        79 ~~~g~~--~~~~g~~~F~~~~~~~gT~V~~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~~l~r~k~~~e~~~~~  150 (155)
T 3ggn_A           79 SLPGAR--IENSGEVLFRPAPGARGTEVVVRLTY---RPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQELGLEH  150 (155)
T ss_dssp             ECTTCS--SCEEEEEEEEECSSSSCEEEEEEEEE---C----------------CHHHHHHHHHHHHHHHHHHTC--
T ss_pred             ECCCCC--cceEEEEEEEECCCCCceEEEEEEEE---ECCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence            999864  4678888888873 457888776553   44433322    2334456778889999999999986543

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.13  E-value=3.3e-09  Score=79.51  Aligned_cols=140  Identities=13%  Similarity=0.046  Sum_probs=90.6

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeE--EEEEEeCCCCeEEEEE
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTE--RLEILDDEKHILSFRV  114 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~E--rL~~~D~~~~~~sY~v  114 (187)
                      ....+..|+||+++||+++.|+.+...|.|.+.+++ .++|  +..-+++...|.....+.-  ++.++++ ++++.|+.
T Consensus        14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~-~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~i~~~~   89 (157)
T 2ns9_A           14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVE-VEDG--SFTIELRLSLGPLRGDARVRASFEDLEK-PSKATVKG   89 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEE-EETT--EEEEEEEEESSSSEEEEEEEEEEEEEET-TTEEEEEE
T ss_pred             EEeeEEEEcCCHHHHHHHHcCHHHHHhhCCCceEEE-ECCC--EEEEEEEEEEcceeEEEEEEEEEEecCC-CcEEEEEE
Confidence            456788999999999999999999778888888877 5221  2222334444421112333  5557776 57888875


Q ss_pred             Ee-ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          115 VG-GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       115 ve-g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      .. +..+...+..++.+.+.+ +|+.+++..++.................++..++..+++||+.+|+
T Consensus        90 ~~~~~~~~~~~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e~  156 (157)
T 2ns9_A           90 SGRGAGSTLDFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  156 (157)
T ss_dssp             EEECSSEEEEEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EecCCCccEEEEEEEEEEeCC-CcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            32 321112367777777775 6677887655322222223445567788888899999999999985

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=98.94  E-value=8e-08  Score=70.64  Aligned_cols=134  Identities=12%  Similarity=0.072  Sum_probs=86.7

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCcccc-ccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      ....+++.|+||+++||+++.|+.....|. +..  ++  ++-.+|..-++++.+++..-.+.-++.++++ ++++.|+.
T Consensus         5 ~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~~--~~--~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p-~~~l~~~~   79 (146)
T 2leq_A            5 LIAQVKTVINAPIEKVWEALVNPEIIKEYMFGTT--VV--SDWKEGSQIVWKGEWKGKAYEDKGTILQFNE-RSILQYSH   79 (146)
T ss_dssp             EEEEEEEEECSCHHHHHHHHSCTTHHHHHSSSCE--EE--CCCSTTCEEEEEEEETTEEEEEEEEEEEEET-TTEEEEEC
T ss_pred             ceEEEEEEECCCHHHHHHHHcCHHHhceeEcCCc--ce--eccCCCCEEEEEecCCCceecccEEEEEEcC-CCEEEEEE
Confidence            456678899999999999999999976773 332  22  2212444444555544311246788999987 58899887


Q ss_pred             Eecc--c---cCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697          115 VGGE--H---RLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASL  183 (187)
Q Consensus       115 veg~--~---p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~  183 (187)
                      ....  +   +...+..++.+.+.+ +|+.+++....+    +..    .....+..-+...|+.||+.+|+..
T Consensus        80 ~~~~~g~~~~~~~~~~~~~~l~~~~-~gT~l~~~~~~~----~~~----~~~~~~~~gw~~~l~~Lk~~le~~~  144 (146)
T 2leq_A           80 FSPLTGKPDLPENYHVVTITLTALK-KGVEVELTQDNN----ETE----KEQKHSEDNWNTMLEGLKKFLENKV  144 (146)
T ss_dssp             BCGGGCCCSCGGGSCEEEEEEEECS-SCEEEEEEEEEE----SSH----HHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             ccCccCCCCCCCCceEEEEEEEEcC-CCeEEEEEEecC----Cch----hhHhhHHhhHHHHHHHHHHHHhccc
Confidence            6421  1   122456667776764 567777654321    111    3445566678899999999999754

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.92  E-value=2.5e-08  Score=74.12  Aligned_cols=133  Identities=14%  Similarity=0.049  Sum_probs=84.9

Q ss_pred             CceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      .+....+++.|+||+++||+++.|+.....|.+.   ++  ++-.+|..-++++. ++   .+.-++.++++ +++++|+
T Consensus         6 ~~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~---~~--~~~~~G~~~~~~~~-~g---~~~~~v~e~~p-~~~l~~~   75 (143)
T 1xn6_A            6 TLNDIKQTIVFNASIQKVWSVVSTAEGIASWFMP---ND--FVLEVGHEFHVQSP-FG---PSPCKVLEIDE-PNHLSFS   75 (143)
T ss_dssp             SCCCEEEEEEESSCHHHHHHTTSCSHHHHTTSCC---BC--CCCCTTCEECBCCT-TC---CCCEEEEEEET-TTEEEEE
T ss_pred             CCCEEEEEEEEcCCHHHHHHHHhCHhHHHHhcCC---CC--cCcCCCCEEEEEEc-CC---CceEEEEEEeC-CCEEEEE
Confidence            3445678889999999999999999997677665   22  23234554445553 33   36788999987 5889998


Q ss_pred             EEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeec---CCC-CCCHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 046697          114 VVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVD---IPE-GNTVEDTKMFVDTVVKLNL-QKLGVVSMA  181 (187)
Q Consensus       114 vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d---~p~-~~~~~~~~~~~~~~~~~gL-~~Lk~~le~  181 (187)
                      ...+     ....++.+.+.+++++.+++....+...   .|. +.........+..-+...| +.||+.+|+
T Consensus        76 ~~~~-----~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~le~  143 (143)
T 1xn6_A           76 WDTD-----GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVEG  143 (143)
T ss_dssp             ETTT-----TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHHC
T ss_pred             EeCC-----CEEEEEEEEECCCCcEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence            7644     4556667777653357777654322110   000 0112334445666678889 999998874

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=98.85  E-value=2e-07  Score=71.25  Aligned_cols=140  Identities=9%  Similarity=-0.018  Sum_probs=79.8

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEE---ecCCCc--ceeeEEEEEEeCCCCeEE
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTV---VSGLPA--STSTERLEILDDEKHILS  111 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~---~~g~~~--~~v~ErL~~~D~~~~~~s  111 (187)
                      ..+.++.|++|+++||+++.|+.+...|.|.+...+-.++   |.. ++.+   .-|...  .....|. .+|+.++++.
T Consensus         8 ~v~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~~---~~~-~~~~a~l~vg~~~~~~~~~s~~-~~~~~~~~I~   82 (161)
T 3p9v_A            8 ELNRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDLGN---NAY-RWEMEKVGVDKHAIQSVYACTY-HADKEAGKIT   82 (161)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEET---TEE-EEEECCBSSGGGCBCCEEEEEE-EEETTTTEEE
T ss_pred             EEEEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEcCC---Cce-EEEEEEEeeeeEEEEEEEEEEE-EEcCCCCEEE
Confidence            4456789999999999999999992233343333322233   322 2333   223211  1233343 3677789999


Q ss_pred             EEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697          112 FRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIP-EGNTVEDTKMFVDTVVKLNLQKLGVVSMASL  183 (187)
Q Consensus       112 Y~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p-~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~  183 (187)
                      |++++|++ .....+...+.+.++++|+++|...+ .+..| .+.-...+..+++.+++.-++...+++.++-
T Consensus        83 ~~~~~g~~-~~~l~g~w~f~p~~~g~t~V~~~~~~-e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~~~  153 (161)
T 3p9v_A           83 WSPIKGEG-NGVVSGSWTLSAKGDNATAVKFQTSA-ELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLKKAF  153 (161)
T ss_dssp             EEECTTST-TEEEEEEEEEEESSSSCEEEEEEEEE-EEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEecCcc-ceeEEEEEEEEECCCCeEEEEEEEEE-EEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998865 47778888888886444678776553 22212 3332333334444444444444444444433

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=98.79  E-value=2.7e-07  Score=71.40  Aligned_cols=140  Identities=9%  Similarity=-0.026  Sum_probs=83.6

Q ss_pred             CCCceeEEEEEEEcCChHHHHHHhhcCCCCcccc-cc-c--eeeEecCCCCCCeEEEEEEec-CCCcceeeEEEEEEeCC
Q 046697           32 KPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HF-I--KSCNMHGDGGVGSIREVTVVS-GLPASTSTERLEILDDE  106 (187)
Q Consensus        32 ~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~-v--~s~~~~G~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~  106 (187)
                      .+......++..|+||+++||+++.|...+..|. |. +  ..++  ++-.+|..-++.+.. ++..-.+.-++.++++ 
T Consensus        18 ~~~~~~i~~~r~i~Ap~e~Vw~altdpe~~~~W~~~~~~~~~~~~--~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p-   94 (178)
T 1xuv_A           18 EPGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKI--FEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTE-   94 (178)
T ss_dssp             CTTCSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEE--ECCSTTCEEEEEEECTTSCEEEEEEEEEEEET-
T ss_pred             CCCCcEEEEEEEECCCHHHHHHHhCCHHHHHhCCCCCCccceEEE--EecccCCEEEEEEECCCCCEEEEEEEEEEEeC-
Confidence            4455667788899999999999999999866674 32 2  2222  332244443344432 2211246778899987 


Q ss_pred             CCeEEEEEEeccccC--CCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHH----HHHHHHHHHHHHHHHHh
Q 046697          107 KHILSFRVVGGEHRL--NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMF----VDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       107 ~~~~sY~vveg~~p~--~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~----~~~~~~~gL~~Lk~~le  180 (187)
                      ++++.|+...++.|.  .....++.+.+.+++++.+++...+   . +    .+.....    +..-+...|+.|++.+|
T Consensus        95 ~~rl~~~~~~~~~~~~~~~~~v~~~l~~~~~ggT~lt~~~~~---~-~----~~~~~~~~~~~~~~Gw~~~L~~Lk~~le  166 (178)
T 1xuv_A           95 PERIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVF---Q-T----IEDRDGMLQSGMEEGINDSYERLDELLE  166 (178)
T ss_dssp             TTEEEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEEC---S-S----HHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEecCCCCCCCcEEEEEEEEEcCCCCEEEEEEEEe---C-C----HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            588998876443332  2345556666654345777765442   1 1    1122222    23456678999999887


Q ss_pred             hc
Q 046697          181 AS  182 (187)
Q Consensus       181 ~~  182 (187)
                      ..
T Consensus       167 ~~  168 (178)
T 1xuv_A          167 KM  168 (178)
T ss_dssp             HH
T ss_pred             hc
Confidence            63

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=98.78  E-value=7.3e-07  Score=68.05  Aligned_cols=145  Identities=13%  Similarity=-0.011  Sum_probs=85.0

Q ss_pred             CceeEEEEEEEcCChHHHHHHhhcCCCCcccc-cc---ceeeEecCCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCC
Q 046697           34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HF---IKSCNMHGDGGVGSIREVTVV--SGLPASTSTERLEILDDEK  107 (187)
Q Consensus        34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~---v~s~~~~G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~  107 (187)
                      ......++..|+||+++||+++.|...+..|. |.   +..++.  +-.+|..-++.+.  +|. .-...-++.++++ +
T Consensus        12 ~~~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~--d~~~Gg~~~~~~~~~~G~-~~~~~~~v~e~~p-~   87 (171)
T 2il5_A           12 EHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEA--DVKEGGKYRIVDQQRNGK-VNVIEGIYESLVM-D   87 (171)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEE--CCSTTCEEEEEEECGGGC-EEEEEEEEEEEET-T
T ss_pred             CCceEEEEEEeCCCHHHHHHHHCCHHHHHhccCCCCccceEEEe--cccCCCEEEEEEECCCCC-EEEEEEEEEEEcC-C
Confidence            34567788999999999999999988865564 32   223333  3224444344443  332 1135678888986 6


Q ss_pred             CeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 046697          108 HILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTV-------EDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       108 ~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~-------~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      +++.|+...++.|......++.+.+.+++++.+++....+... ..+...       ......+..-+...|+.|++.+|
T Consensus        88 ~rl~~~~~~~~~~~~~~~~~~~l~~~~~g~T~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le  166 (171)
T 2il5_A           88 EYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEK-ERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIE  166 (171)
T ss_dssp             TEEEEEESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEecCCCCCcEEEEEEEEECCCCCEEEEEEEEeccCc-ccccccchhccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999998754443333455566666643367777765422110 001111       12233344456678999999998


Q ss_pred             hcc
Q 046697          181 ASL  183 (187)
Q Consensus       181 ~~~  183 (187)
                      +.-
T Consensus       167 ~~~  169 (171)
T 2il5_A          167 TST  169 (171)
T ss_dssp             TTS
T ss_pred             hcc
Confidence            753

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.78  E-value=6.8e-08  Score=73.29  Aligned_cols=133  Identities=14%  Similarity=0.108  Sum_probs=85.9

Q ss_pred             CceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ......+++.|+||+++||+++.|...+..|.+.+...+. ..|  |..+ +++. |..  .+..++.++++ ++++.|+
T Consensus         7 ~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~-~~G--g~~~-~~~~-g~~--~~~~~v~e~~p-~~~l~~~   78 (160)
T 2lak_A            7 ESFVVRREAHLAAPPAAVFALMTDPEKILRWMGTEAEVEP-EPG--GLYL-VNVT-GAR--FARGSFREVVP-VHRLAYS   78 (160)
T ss_dssp             SCCEEEEEEEESSCHHHHHHHHHCHHHHHHTSCSSEEESC-STT--CCEE-ECSS-TTC--CSSCCEEEEET-TTEEEEC
T ss_pred             CCceEEEEEEeCCCHHHHHHHhcChHHHhhhCCCcceeec-cCC--CEEE-EEEe-CCc--eEEEEEEEEcC-CCEEEEE
Confidence            3456678889999999999999999997677665433333 222  3443 5454 322  46678888987 5889988


Q ss_pred             EEecc---ccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697          114 VVGGE---HRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASL  183 (187)
Q Consensus       114 vveg~---~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~  183 (187)
                      ...+.   .+......++.+.+.+ +|+.+++...-  +  +.   .+ ....+..-+..+|+.||+.+|+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~-~gT~l~~~~~~--~--~~---~~-~~~~~~~gw~~~L~~Lk~~le~~~  142 (160)
T 2lak_A           79 FGWDGSEVVPPGSSLVEIDLIEQG-GGTLLRLTHSG--L--PS---AE-QCAGHEEGWAHYLGRLTEVAAGRD  142 (160)
T ss_dssp             CCCCSSSCCCTTSCEEEEEEEECS-SSEEEEEEEEC--C--CS---HH-HHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             EEecCCCCCCCCcEEEEEEEEECC-CCEEEEEEEeC--C--CC---HH-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            75432   2334566667776764 56777765431  1  11   12 223344456789999999998754

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.74  E-value=2.9e-07  Score=68.87  Aligned_cols=133  Identities=16%  Similarity=0.084  Sum_probs=81.3

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEE
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVV  115 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vv  115 (187)
                      ....+++.|+||+++||+++.|+.....|.+..   .  ++-.+|..-++.+ +++   .+.-++.++++ +++++|+..
T Consensus         5 ~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~---~--~~~~~Gg~~~~~~-~~g---~~~~~v~e~~p-~~~l~~~~~   74 (146)
T 1xn5_A            5 PDIKKEVRFNAPIEKVWEAVSTSEGLAFWFMEN---D--LKAETGHHFHLQS-PFG---PSPCQVTDVER-PIKLSFTWD   74 (146)
T ss_dssp             CCEEEEEEESSCHHHHHHHTTSHHHHHTTSCCB---C--CCSCTTCEEEEEC-SSC---EEEEEEEEEET-TTEEEEEET
T ss_pred             cEEEEEEEEcCCHHHHHHHHhChhHHHHhcCCC---C--CCccCCCEEEEEe-cCC---ceEEEEEEEeC-CcEEEEEEe
Confidence            456678899999999999999999966776542   2  2322455444555 333   47888999987 588988875


Q ss_pred             eccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCC------CCHHHHHHHHHHHHHHHH-HHHHHHHhhcccCC
Q 046697          116 GGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEG------NTVEDTKMFVDTVVKLNL-QKLGVVSMASLHGH  186 (187)
Q Consensus       116 eg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~------~~~~~~~~~~~~~~~~gL-~~Lk~~le~~~~~~  186 (187)
                      .     .....++.+.+.+ +|+.+++...-  +...++      ...+.....+..-....| +.|++.++...|.|
T Consensus        75 ~-----~~~~~~~~l~~~~-~gT~l~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~GW~~~l~~~L~~~l~~~~~~~  144 (146)
T 1xn5_A           75 T-----DGWSVTFHLKEEE-NGTIFTIVHSG--WKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVELEHHHH  144 (146)
T ss_dssp             T-----TTEEEEEEEEECS-SSEEEEEEEEC--CCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC------
T ss_pred             C-----CCEEEEEEEEEcC-CCEEEEEEEEE--ecCCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Confidence            2     1234555666654 56777765431  111110      112334445566677889 99999999988766

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=98.71  E-value=4.6e-07  Score=66.77  Aligned_cols=136  Identities=13%  Similarity=0.071  Sum_probs=82.4

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCcccccc--ceeeEecCCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHF--IKSCNMHGDGGVGSIREVTVV--SGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~--v~s~~~~G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ..++..|+||+++||+++.|......|.+.  +......++-.+|..-++.+.  .++....+.-++.++++ ++++.|+
T Consensus         5 ~~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g~~~~~~~~v~~~~p-~~~l~~~   83 (147)
T 1z94_A            5 IRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVP-GERIRYT   83 (147)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEET-TTEEEEE
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCCCEEEEEEEEEEEcC-CCEEEEE
Confidence            457789999999999999999886566542  221112233335555555554  22211246778999987 6899999


Q ss_pred             EEeccccC-CCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697          114 VVGGEHRL-NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASL  183 (187)
Q Consensus       114 vveg~~p~-~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~  183 (187)
                      ...++... .....++.+.+.+ +|+.+++....   . +...    ....+..-+...|+.||+.+|+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~-~gT~l~~~~~~---~-~~~~----~~~~~~~gw~~~L~~L~~~le~~~  145 (147)
T 1z94_A           84 DRFDDAGLPGDMITTITLAPLS-CGADLSIVQEG---I-PDAI----PPENCYLGWQQSLKQLAALVEPDM  145 (147)
T ss_dssp             EEESCCC---CEEEEEEEEEET-TEEEEEEEEEC---C-CTTS----CHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred             EEEeCCCCCCcEEEEEEEEecC-CCEEEEEEEEc---C-Cchh----hHHHHHHHHHHHHHHHHHHHHhhC
Confidence            87553212 2345556666664 56777765442   1 2221    123345567788999999998743

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.70  E-value=1.3e-06  Score=66.79  Aligned_cols=145  Identities=12%  Similarity=0.076  Sum_probs=82.4

Q ss_pred             CCCceeEEEEEEEcCChHHHHHHhhcCCCCcccccc----ceeeEecCCCCCCeEEEEEEe--cCCCcceeeEEEEEEeC
Q 046697           32 KPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHF----IKSCNMHGDGGVGSIREVTVV--SGLPASTSTERLEILDD  105 (187)
Q Consensus        32 ~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~----v~s~~~~G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~  105 (187)
                      .+......++..|+||+++||+++.|...+..|.+.    +..++  ++-.+|..-++.+.  +|.. -.+.-++.++++
T Consensus         9 ~~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~--~d~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p   85 (164)
T 3pu2_A            9 PGSATRLEFRRHFAATPEQLWAALTSPALLPAWLFARGWPMTECV--FEPHKGGLIRQVWTGPEGRT-RGLTGRVILAEP   85 (164)
T ss_dssp             CCBTTEEEEEEEESSCHHHHHHHHHCTTTGGGTSCBTTBCEEEEE--ECCSTTCEEEEEEECGGGCE-EEEEEEEEEEET
T ss_pred             CCCCceEEEEEEECCCHHHHHHHhcCHHHHhhEeCCCCeeeEEEE--EeccCCCEEEEEEECCCCCE-EEEEEEEEEEcC
Confidence            345566778899999999999999999997677542    12233  33223433334443  3421 246778888987


Q ss_pred             CCCeEEEEEEe-c-cccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697          106 EKHILSFRVVG-G-EHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASL  183 (187)
Q Consensus       106 ~~~~~sY~vve-g-~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~  183 (187)
                       ++++.|+..- + ..| ....-++.+.+.+ +|+.+++...   +.. .+..+......+..=...+|+.|++.|+.+-
T Consensus        86 -~~rl~~t~~~~~~~~~-~~s~vt~~l~~~~-~gT~l~l~~~---~~~-~~~~~~~~~~~~~~GW~~~L~~L~~~l~~~~  158 (164)
T 3pu2_A           86 -PHRLIHSELYDEDWTG-GETLVTLQLLPVE-GGTELAMAVD---YAT-PEARDAVAASAMATEMEEAYRHLDVMLAALE  158 (164)
T ss_dssp             -TTEEEEEEBCC---CC-SCEEEEEEEEEET-TEEEEEEEEE---CSS-TTHHHHHHTSTHHHHHHHHHHHHHHHHHHC-
T ss_pred             -CCEEEEEEeccCCCCC-CCEEEEEEEEEcC-CCEEEEEEEE---eCC-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence             5888888742 2 122 2233444455554 5677776544   211 1110111112234556788999999999987


Q ss_pred             cCC
Q 046697          184 HGH  186 (187)
Q Consensus       184 ~~~  186 (187)
                      |.|
T Consensus       159 ~~~  161 (164)
T 3pu2_A          159 HHH  161 (164)
T ss_dssp             ---
T ss_pred             hhc
Confidence            765

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.62  E-value=2.3e-06  Score=63.89  Aligned_cols=129  Identities=14%  Similarity=0.060  Sum_probs=79.4

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccc-ccc----ceeeEec-CCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCCCe
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKY-KHF----IKSCNMH-GDGGVGSIREVTVV--SGLPASTSTERLEILDDEKHI  109 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w-~p~----v~s~~~~-G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~~~  109 (187)
                      ..+++.|+||+++||+++.|...++.| .+.    +..++.. ..|  |..+ +.+.  +|...-.+.-++.++++ +++
T Consensus         3 i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~p~~~~~~~~~~d~~~G--g~~~-~~~~~~~G~~~~~~~g~v~e~~p-~~~   78 (144)
T 2lgh_A            3 ISIEAHIEQEIEAVWWAWNDPDCIARWNAASSDWHTTGSRVDLVVG--GRFC-HHMAAKDGSAGFDFTGTFTRVEA-PTR   78 (144)
T ss_dssp             EEEEEEESSCHHHHHHHHHCHHHHTTSSSCSTTEEEEEEEECCSTT--CEEE-EEEEETTSSCEEEEEEEEEEEET-TTE
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhccCCCCCCcccceEEECCCCC--CEEE-EEEECCCCCceEEeEEEEEEEeC-CCE
Confidence            457889999999999999999886666 432    2233333 223  4444 3343  33201235678889987 589


Q ss_pred             EEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          110 LSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       110 ~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      +.|+.. |     ....++.+.+.+ +|+.+++....     +.....    ..+..-....|+.|++.+|...+.|
T Consensus        79 l~~~~~-~-----~~~~~~~l~~~~-~gT~l~~~~~~-----~~~~~~----~~~~~Gw~~~L~~L~~~le~~~~~~  139 (144)
T 2lgh_A           79 LSFVMD-D-----GREVDVQFASEP-GGTWVQETFDA-----ETSHTP----AQQQAGWQGILDNFKRYVEAAGLEH  139 (144)
T ss_dssp             EEEEET-T-----CCEEEEEEEEET-TEEEEEEEEEC-----CTTSCH----HHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             EEEEec-C-----CcEEEEEEEEcC-CCEEEEEEEEC-----CCHHHH----HHHHHHHHHHHHHHHHHHhhCcccc
Confidence            999953 2     234455555653 55666654432     122211    2234455678999999999988776

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.61  E-value=1.9e-06  Score=65.89  Aligned_cols=138  Identities=9%  Similarity=0.069  Sum_probs=80.6

Q ss_pred             CceeEEEEEEEcCChHHHHHHhhcCCCCcccc-cc---ceeeEecCCCCCCeEEEEEEec-CCCcceeeEEEEEEeCCCC
Q 046697           34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HF---IKSCNMHGDGGVGSIREVTVVS-GLPASTSTERLEILDDEKH  108 (187)
Q Consensus        34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~---v~s~~~~G~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~~  108 (187)
                      ......+++.|+||+++||+++.|...+..|. |.   +..++.  +-.+|..-++.+.+ ++..-...-++.++++ ++
T Consensus        10 ~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~--d~~~Gg~~~~~~~~~~g~~~~~~~~v~e~~p-~~   86 (172)
T 2ldk_A           10 EALSFSIVAEFDADVKRVWAIWEDPRQLERWWGPPTWPATFETH--EFTVGGKAAYYMTGPDGTKARGWWQFTTIEA-PD   86 (172)
T ss_dssp             TTTEEEEEEEESSCHHHHHHHHHCHHHHHTTSSCTTSCEEEEEE--CCSTTCEEEEEEECTTSCEEEEEEEEEEECS-SS
T ss_pred             CCceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCcccceEEE--eecCCCEEEEEEECCCCCEEeeEEEEEEEcC-CC
Confidence            44566788899999999999999988865553 32   122333  32244433344432 2221236778999987 58


Q ss_pred             eEEEEEEecc---ccC---CCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHH----HHHHHHHHHHHHHHHH
Q 046697          109 ILSFRVVGGE---HRL---NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKM----FVDTVVKLNLQKLGVV  178 (187)
Q Consensus       109 ~~sY~vveg~---~p~---~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~----~~~~~~~~gL~~Lk~~  178 (187)
                      ++.|+....+   .|.   .....++.+.+.+ +|+.+++...+   . +    .+....    .+..=+...|+.|++.
T Consensus        87 rl~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~lt~~~~~---~-~----~~~~~~~~~~~~~~Gw~~~L~~L~~~  157 (172)
T 2ldk_A           87 HLEFDDGFADEHGAPVDELGVTHATVKLEPLE-NRTRMTIISTF---E-S----EEQMQKMAEMGMEEGMREAIEQIDAV  157 (172)
T ss_dssp             EEEEEEEEBCSSCCBCTTTCEEEEEEEEEEET-TEEEEEEEEEE---S-C----HHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCCCCCccCCCccEEEEEEEEEcC-CCEEEEEEEEc---C-C----HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            8888875432   222   2233445555553 56777765442   1 1    112122    2344556789999999


Q ss_pred             Hhhcc
Q 046697          179 SMASL  183 (187)
Q Consensus       179 le~~~  183 (187)
                      +|+..
T Consensus       158 le~~~  162 (172)
T 2ldk_A          158 LSEPA  162 (172)
T ss_dssp             HTCCS
T ss_pred             HHHhH
Confidence            98754

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.60  E-value=7.3e-07  Score=67.93  Aligned_cols=144  Identities=12%  Similarity=0.070  Sum_probs=80.9

Q ss_pred             ceeEEEEEEEcCChHHHHHHhhcCCCCcccc-cc-ceeeEecCCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCCCeE
Q 046697           35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HF-IKSCNMHGDGGVGSIREVTVV--SGLPASTSTERLEILDDEKHIL  110 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~-v~s~~~~G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~~~~  110 (187)
                      .....++..|+||+++||+++.|...+..|. |. +......++-.+|..-++.+.  +|..  .+.-++.++++ ++++
T Consensus         7 ~~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~--~~~g~v~e~~p-~~rl   83 (164)
T 2l9p_A            7 KNKIIFTRTFSAPINKVFDAYTKRELFEQWFHPQDASVTVYDFNATKGGSAFYAIQAPQMIS--YTIAEYLQVDA-PYYI   83 (164)
T ss_dssp             SSEEEECCEESSCHHHHHHHHHCHHHHTTTCCCTTCEEEEEECCCSTTEEEEEEEEETTEEE--EEEEEESCCBT-TTEE
T ss_pred             CceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCceeeEEEEeccCCCEEEEEEECCCCCE--EEEEEEEEEcC-CCEE
Confidence            3456778899999999999999998866664 32 211112234234443334343  2321  16778899987 5888


Q ss_pred             EEEEEecc---ccC---CCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046697          111 SFRVVGGE---HRL---NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLH  184 (187)
Q Consensus       111 sY~vveg~---~p~---~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~  184 (187)
                      .|+...++   .|.   ....-++.+.+.+ +|+.+++...   +. +....+......+..=....|+.|++.+++++.
T Consensus        84 ~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~---~~-~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~~~~  158 (164)
T 2l9p_A           84 EYLDYFATSKGEKDTSMPGMHITLNFEEVK-GKTTVTSTST---FP-TESAAQQAIDMGVETGMNSTLNQLEKLLNQKLE  158 (164)
T ss_dssp             EEEEEEEBTTBSCCSSSCCEEEEEEECCCS-SSEEEEEEEE---CS-STTHHHHHHHHTHHHHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEEecCCCCCccCCCCceEEEEEEEECC-CCEEEEEEEE---cC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence            88765321   222   1233344443432 5677776543   22 111101111112334456789999999999876


Q ss_pred             CC
Q 046697          185 GH  186 (187)
Q Consensus       185 ~~  186 (187)
                      .|
T Consensus       159 ~~  160 (164)
T 2l9p_A          159 HH  160 (164)
T ss_dssp             CC
T ss_pred             hh
Confidence            55

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.57  E-value=2e-06  Score=65.44  Aligned_cols=141  Identities=10%  Similarity=0.024  Sum_probs=77.5

Q ss_pred             ceeEEEEEEEcCChHHHHHHhhcCCCCcccc-cc--c--eeeEecCCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCC
Q 046697           35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HF--I--KSCNMHGDGGVGSIREVTVV--SGLPASTSTERLEILDDEK  107 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~--v--~s~~~~G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~  107 (187)
                      .....++..|+||+++||+++.|...+..|. |.  +  ..+++  +-.+|..-++.+.  +|.. -.+.=++.++++ +
T Consensus         7 ~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~--d~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p-~   82 (161)
T 3rd6_A            7 HSTFTIERTYPQSPDRVFHAFADKATVRRWRVDGDGFTVAEFSF--DFRVGGGEVSRFSYGGGPE-VRLDAQFQDIVP-D   82 (161)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHHHHTCCCCC---CEEEE--CCSTTCEEEEEECSTTSCC-EEEEEEEEEEET-T
T ss_pred             CceEEEEEEECCCHHHHHHHhcCHHHHhhccCCCCCceeeEEEE--ccCcCCEEEEEEECCCCCE-EEEEEEEEEEcC-C
Confidence            3456778899999999999999988866665 32  2  12233  3223443344453  2321 246778888987 5


Q ss_pred             CeEEEEEEe--ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 046697          108 HILSFRVVG--GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHG  185 (187)
Q Consensus       108 ~~~sY~vve--g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~  185 (187)
                      +++.|+..-  ...|.....-++.+.+.+ +|+.+++.......+.  ....    ..+..=...+|+.|++.++..-+.
T Consensus        83 ~rl~~~~~~~~~~~~~~~s~v~~~l~~~~-~gT~lt~~~~~~~~~~--~~~~----~~~~~GW~~~L~~L~~~le~~~~~  155 (161)
T 3rd6_A           83 QRIVFSYRMAIGPQPMSASLTTVELTPSG-DGTRLTYTEQGAFFDG--VDSA----KGREEGTRGLLEALAAELQKWKLE  155 (161)
T ss_dssp             TEEEEEEEEEETTEEEEEEEEEEEEEEET-TEEEEEEEEEEEEETT--CCCH----HHHHHHHHHHHHHHHHHC------
T ss_pred             CEEEEEEEecCCCCCCCceEEEEEEEECC-CCEEEEEEEEecCcch--hhhH----HHHHHHHHHHHHHHHHHHhhcchh
Confidence            788887642  122222233344444543 5677776654221111  1111    234555678899999999887665


Q ss_pred             C
Q 046697          186 H  186 (187)
Q Consensus       186 ~  186 (187)
                      |
T Consensus       156 ~  156 (161)
T 3rd6_A          156 H  156 (161)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.55  E-value=7.1e-06  Score=60.24  Aligned_cols=124  Identities=12%  Similarity=0.060  Sum_probs=76.5

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG  117 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg  117 (187)
                      ..+++.|+||+++||+++.|......|.+.  .+  .++-.+|..-++++.+..  ....-++.++++ ++++.|+..+|
T Consensus         3 i~~~~~i~ap~e~Vw~altd~~~~~~W~~~--~~--~~~~~~Gg~~~~~~~~~~--~~~~~~v~~~~p-~~~l~~~~~~g   75 (135)
T 3q6a_A            3 IITKMQVDVPRETVFEAFVDPEKIGGFWFS--SS--SERWEQGKTITLRYEEYD--AELNINIERVED-NQLIAFTWGAH   75 (135)
T ss_dssp             EEEEEEESSCHHHHHHHHHCTTTGGGTSSS--EE--SSCCCTTCEEEEECGGGT--C-CEEEEEEEET-TTEEEEEETTE
T ss_pred             EEEEEEeCCCHHHHHHHHcCHHHhcccCCC--CC--cccccCCCEEEEEEcCcC--ceEEEEEEEEcC-CCEEEEEEcCC
Confidence            457789999999999999999997777432  22  233234554445554321  134457888887 58899987642


Q ss_pred             cccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          118 EHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       118 ~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                             ..++.+.+.+ +|+.+++...  .+  +... .. .......-....|+.||+.+|..
T Consensus        76 -------~~~~~l~~~~-~gT~l~~~~~--~~--~~~~-~~-~~~~~~~GW~~~l~~L~~~le~g  126 (135)
T 3q6a_A           76 -------PITIQFEESE-AGTVVTTTEK--DF--DTQD-VK-QLLGQKEGWVYMLSCLKVYLEHG  126 (135)
T ss_dssp             -------EEEEEEEEET-TEEEEEEEEC--CC--CSSC-HH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -------eEEEEEEECC-CCEEEEEEEc--CC--Ccch-HH-HHhhchhCHHHHHHHHHHHHhcC
Confidence                   4455555643 5566665432  11  2211 22 22344555667899999999864

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.55  E-value=1.5e-06  Score=65.30  Aligned_cols=140  Identities=9%  Similarity=-0.051  Sum_probs=77.9

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccc-cceeeE---ecCCCCCCeEEEEEEec-CCCcceeeEEEEEEeCCCCeEE
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKH-FIKSCN---MHGDGGVGSIREVTVVS-GLPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p-~v~s~~---~~G~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      ...++..|+||+++||+++.|...+..|.+ .--.+.   ..++-.+|..-++.+.+ ++..-.+.-++.++++ ++++.
T Consensus         3 ~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p-~~~l~   81 (152)
T 3eli_A            3 DLRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKP-PQSVG   81 (152)
T ss_dssp             EEEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEET-TTEEE
T ss_pred             eEEEEEEECCCHHHHHHHHcCHHHHhhccCCCCcccccceeEEcccCCcEEEEEEECCCCCEEEEEEEEEEEcC-CCEEE
Confidence            456788999999999999999888656643 211111   11332344443444432 2211246778889987 58888


Q ss_pred             EEEEeccccC---CCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          112 FRVVGGEHRL---NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       112 Y~vveg~~p~---~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      |+....+.+-   ....-++.+.+.+ +|+.+++...  .+  +.   .+ .......-....|+.|++.++-..|.|
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~l~~~~-~gT~l~l~~~--~~--~~---~~-~~~~~~~GW~~~L~~L~~~l~~~~~~~  150 (152)
T 3eli_A           82 FTWGWHDDDDRRGAESHVMFIVEPCA-KGARLILDHR--EL--GD---DE-MSLRHEEGWTSSLRKLAAELALEHHHH  150 (152)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEE--SC--SC---HH-HHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             EEEeecCCCCCCCCcEEEEEEEEECC-CCEEEEEEEc--cC--CC---HH-HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            8875432211   1112222222332 4566765432  11  21   12 234455666788999999999887765

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.54  E-value=5e-06  Score=62.61  Aligned_cols=137  Identities=9%  Similarity=0.006  Sum_probs=78.3

Q ss_pred             CceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      +.....+++.|+||+++||+++.|...+..|.+.   +..  +-.+|..-++....|+   .+.=++.++++ ++++.|+
T Consensus         7 ~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~---~~~--~~~~Gg~~~~~~~~g~---~~~g~v~e~~p-~~~l~~~   77 (151)
T 3q63_A            7 ENRTVVVERQISHPPEKLWRALTQPHLIEEWLMK---NDF--KPAVGHRFNISADWGG---VLDCEVLAVEP-NKTLSYT   77 (151)
T ss_dssp             --CEEEEEEEESSCHHHHHHHHHCHHHHHHHSCE---ECC--CSSTTCEEEEECTTSC---EEEEEEEEEET-TTEEEEE
T ss_pred             CCCeEEEEEEeCCCHHHHHHHHcCHHHHHhhcCc---CCC--ccCCCCEEEEECCCCC---EEEEEEEEEeC-CCEEEEE
Confidence            3445667889999999999999999987677652   222  2224444334322233   57788889987 5888888


Q ss_pred             EEecc--c-cCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          114 VVGGE--H-RLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       114 vveg~--~-p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      ...+.  . +...-.-++.+.+.+ +|+.+++...-    .+.+. .. ....+..=....|+.|++.+|..-+.|
T Consensus        78 ~~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~g----~~~~~-~~-~~~~~~~GW~~~L~~L~~~le~~~~~~  146 (151)
T 3q63_A           78 WNLAHQDPAFDLRSVVTFTLTPTP-TGTHLRMEQSG----FRPDQ-RR-AYGGAKMGWPQFFEKLEQLLDRTDLEH  146 (151)
T ss_dssp             CBBCCSSTTTCBCCEEEEEEEECS-SSEEEEEEEEC----CCTTC-HH-HHHHHHHHHHHHHHHHHHHHC------
T ss_pred             EecCCCCCCCCCCeEEEEEEEEcC-CCEEEEEEEeC----CCcch-HH-HHHhhhhCHHHHHHHHHHHHhccCccc
Confidence            76432  1 112223344455554 56777765431    12211 22 223344455678999999999876654

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.49  E-value=5e-07  Score=68.12  Aligned_cols=135  Identities=13%  Similarity=0.042  Sum_probs=82.9

Q ss_pred             CceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ......+++.|+||+++||+++.|+.....|.+.   ++  ++-.+|..-++++..|    .+.-++.++++ ++++.|+
T Consensus         8 ~~~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~---~~--~~~~~Gg~~~~~~~~g----~~~~~v~e~~p-~~~l~~~   77 (152)
T 2kew_A            8 ALPDITKSITLEAPIQKVWETVSTSEGIAKWFMP---ND--FQLKEGQEFHLQSPFG----PSPCKVLAVQA-PTELSFE   77 (152)
T ss_dssp             SSCCEEEEEEECSCHHHHHHHSSSSHHHHHHHCS---CC--CCSCSSCCBCSSSSCC----SCCBEEEEEET-TTEEEEE
T ss_pred             cccEEEEEEEECCCHHHHHHHHhCHHHHHHhcCC---CC--CCCCCCCEEEEEecCC----ceEEEEEEEeC-CcEEEEE
Confidence            3345668889999999999999999997677554   22  2222344333444323    36778889987 5888888


Q ss_pred             EEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCC-CCC-----CHHHHHHHHHHHHHHHH-HHHHHHHhhcccCC
Q 046697          114 VVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIP-EGN-----TVEDTKMFVDTVVKLNL-QKLGVVSMASLHGH  186 (187)
Q Consensus       114 vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p-~~~-----~~~~~~~~~~~~~~~gL-~~Lk~~le~~~~~~  186 (187)
                      ...+     ....++.+.+.+ +|+.+++...  .+... ...     ...........-....| +.|++.+|..-|.|
T Consensus        78 ~~~~-----~~~~~~~l~~~~-~gT~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le~g~~~~  149 (152)
T 2kew_A           78 WDTE-----GWVVTFQLEDLG-EKTGFTLIHS--GWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEELEHHH  149 (152)
T ss_dssp             CTTS-----CCEEEEEEECCS-SCEEEEEEEC--CSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTCSCSSS
T ss_pred             EccC-----CEEEEEEEEECC-CCEEEEEEEE--eccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHhcccccc
Confidence            6543     234445555554 5666665432  11111 011     12233344555667889 99999999877665

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.47  E-value=6.3e-06  Score=63.19  Aligned_cols=130  Identities=14%  Similarity=0.067  Sum_probs=78.1

Q ss_pred             CCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCC--Ce
Q 046697           32 KPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEK--HI  109 (187)
Q Consensus        32 ~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~--~~  109 (187)
                      -|-+...+.+++|++|+++||+++.|+.++..|.+.++++ +..+   +.-+..+....+   .++=|   +++.+  ..
T Consensus        23 ~~~m~~~~~si~I~ap~eeVy~~~~D~e~lP~W~~~l~~~-~~~~---~~~w~a~~~p~G---~v~v~---~~~~~~~gv   92 (156)
T 2qpv_A           23 MPVMQSRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGG-LEAD---GEDWIAKGGPLG---EVRVN---FAPHNEFGV   92 (156)
T ss_dssp             CCCCCEEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTC-CEEE---TTEEEEECSSSC---EEEEE---ECCCCSSCB
T ss_pred             CCCccceEEEEEEcCCHHHHHHHHHChhhHHHHHHhhhhh-cccC---CCcEEEeccCCC---cEEEE---EecCCCceE
Confidence            4456667888999999999999999999988999999886 3221   222333311222   23333   32322  11


Q ss_pred             -EEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          110 -LSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       110 -~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                       ..|..+.+..   .....+++.+.+ +|+.+++...    . +++.....++ .-...++..|++||+++|.
T Consensus        93 ~d~~~~l~~g~---~~~~~~rv~p~g-~GTeV~~tl~----~-~pg~~~~~~~-~~~~~v~~dL~~LK~l~E~  155 (156)
T 2qpv_A           93 IDHVVTLPDGL---KVYNALRVTPNG-SGTEVSFTLL----R-LEGMTDEDFE-QDASAITADLEMLKSLLEA  155 (156)
T ss_dssp             CCEEEECTTSC---EEEEEEEEEEET-TEEEEEEEEE----C-CTTCCHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEecCCCc---EEEEEEEEEeCC-CCEEEEEEEe----c-CCCCChhhhh-hhHHHHHHHHHHHHHHHhC
Confidence             2344444322   123346666764 5677765431    2 3445555553 3344789999999999984

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.47  E-value=5.6e-06  Score=62.95  Aligned_cols=142  Identities=13%  Similarity=0.045  Sum_probs=82.1

Q ss_pred             ceeEEEEEEEcCChHHHHHHhhcCCCCccccccc-----eeeEecCCCCCCeEEEEEEec-CCCcceeeEEEEEEeCCCC
Q 046697           35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFI-----KSCNMHGDGGVGSIREVTVVS-GLPASTSTERLEILDDEKH  108 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v-----~s~~~~G~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~~  108 (187)
                      .....++..|+||+++||+++.|...+..|.+..     ..++..  -.+|..-++.+.. ++..-.+.=++.++++ ++
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~g~~~~~~~~d--~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p-~~   84 (162)
T 3q64_A            8 HSTFIIERLYPAPPSKVFFALGNADAKRRWFTDPDNPMPGRFEMD--FRVGGKEVNAGGPKDGPIHVYTATYQDIVP-DQ   84 (162)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHHHHSSCTTSCCGGGCEEC--CSTTCEEEEEECCTTSCCEEEEEEEEEEET-TT
T ss_pred             cceEEEEEEeCCCHHHHHHHHCCHHHHhhcCCCCCCccceEEEEC--CccCCEEEEEEECCCCCEEEEEEEEEEEcC-CC
Confidence            3456678899999999999999988865665322     223332  1234333344432 2211246778899987 58


Q ss_pred             eEEEEEEe--ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          109 ILSFRVVG--GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       109 ~~sY~vve--g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      ++.|+..-  ...|.....-++.+.+.+ +|+.+++.......+.  ....    ..+..=....|+.|++.++..-+.|
T Consensus        85 rl~~~~~~~~~~~~~~~s~v~~~l~~~~-~gT~lt~~~~~~~~~~--~~~~----~~~~~GW~~~L~~L~~~le~~~~~~  157 (162)
T 3q64_A           85 RIVYSYDMLFGETRISVSLATIQLFAEG-EGTRLVLTEQGAFLDG--HDTP----STREHGTGVLLDLLDAFLDKTTLEH  157 (162)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEET-TEEEEEEEEEEEEETT--SSCH----HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EEEEEEEecCCCCCCCceEEEEEEEEcC-CCEEEEEEEEecCccc--hhHH----HHHHHHHHHHHHHHHHHHhhchhhh
Confidence            88887652  122222233344444543 5677776544211111  1111    2345556778999999999877655

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.47  E-value=9e-06  Score=60.16  Aligned_cols=131  Identities=10%  Similarity=0.030  Sum_probs=79.5

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccc--ccc-ceeeEecCCCCCCeEEEEEEec--CCCcceeeEEEEEEeCCCCeEEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKY--KHF-IKSCNMHGDGGVGSIREVTVVS--GLPASTSTERLEILDDEKHILSF  112 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w--~p~-v~s~~~~G~g~vG~vR~lt~~~--g~~~~~v~ErL~~~D~~~~~~sY  112 (187)
                      ..++..|+||+++||+++.|......|  .|. +......++-.+|..-++.+..  |...-.+.-++.++++ ++++.|
T Consensus         3 i~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p-~~~l~~   81 (142)
T 2lcg_A            3 ITVETTVAAPVGKVWRAYTTPEDIKQWNAASDDWHTTAATVDLREGGAFSSRMEAKDGSMGFDFAGTYTKVVE-NKRIEY   81 (142)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHCCSSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEET-TTEEEE
T ss_pred             EEEEEEeCCCHHHHHHHhCCHHHHhcCCCCCCCccceeeEEccccCCEEEEEEEcCCCCceeeeEEEEEEEcC-CCEEEE
Confidence            457789999999999999999886666  332 2111112332355555455542  3211246778899987 689999


Q ss_pred             EEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          113 RVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       113 ~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      +.- |      ...++.+.+.+ +|+.+++....     +.....    ..+..-...+|+.|++.++.....|
T Consensus        82 ~~~-g------~~~~~~l~~~~-~gT~l~~~~~~-----~~~~~~----~~~~~Gw~~~L~~L~~~le~~~~~~  138 (142)
T 2lcg_A           82 AFG-D------RTAKVEFLEAP-QGVTVRVSFVA-----ETEYPV----EQQQQGWQAILNNFKRHVESHLEHH  138 (142)
T ss_dssp             EET-T------EEEEEEEEEET-TEEEEEEEEEC-----CSSSCH----HHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred             EcC-C------CEEEEEEEEcC-CCEEEEEEEec-----CCHHHH----HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            961 1      44455555654 55667655331     222212    2344556778999999998765433

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.44  E-value=9.5e-06  Score=60.49  Aligned_cols=132  Identities=9%  Similarity=0.044  Sum_probs=77.9

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccc-c-cc-ceeeEecCCCCCCeEEEEEEec-CCC-cceeeEEEEEEeCCCCeEEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKY-K-HF-IKSCNMHGDGGVGSIREVTVVS-GLP-ASTSTERLEILDDEKHILSF  112 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w-~-p~-v~s~~~~G~g~vG~vR~lt~~~-g~~-~~~v~ErL~~~D~~~~~~sY  112 (187)
                      ..++..|+||+++||+++.|...++.| . |. +......++-.+|..-++.+.. ++. .-.+.-++.++++ ++++.|
T Consensus         4 i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p-~~~l~~   82 (144)
T 2l8o_A            4 ITVEVTVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKT-NDLIEY   82 (144)
T ss_dssp             EEEEEEECSCHHHHHHHHHCHHHHHHHSTTCTTCEEEEEECCCSTTCEEEEEEECTTSSCEEEEEEEEEEEET-TTEEEE
T ss_pred             EEEEEEECCCHHHHHHHHCCHHHHhhccCCCCCcccceeEEccCCCCEEEEEEECCCCCceeeeeEEEEEEeC-CCEEEE
Confidence            457789999999999999999887667 4 32 2111112332233333344432 222 1136678899987 589999


Q ss_pred             EEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          113 RVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       113 ~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      +.. |     ....++.+.+.+ +|+.+++...     .+.....    ..+..=....|+.|++.+|.....|
T Consensus        83 ~~~-g-----~~~v~~~l~~~~-~gT~l~~~~~-----~~~~~~~----~~~~~Gw~~~L~~L~~~le~~~~~~  140 (144)
T 2l8o_A           83 TIG-D-----GRKVRIVFTHTG-DTTNIVESFD-----PEETNPR----ELQQSGWQAILNSFKSYTENNLEHH  140 (144)
T ss_dssp             EET-T-----CCEEEEEEEECS-SSEEEEEEEC-----CCSSSCH----HHHHHHHHHHHHHHHHHHGGGTTCC
T ss_pred             EeC-C-----CeEEEEEEEEcC-CCEEEEEEEe-----CCCHHHH----HHHHHHHHHHHHHHHHHHHhHhhhh
Confidence            953 2     244555555654 5676765432     1222222    2234445678999999999865443

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.44  E-value=6.1e-06  Score=63.53  Aligned_cols=138  Identities=11%  Similarity=-0.002  Sum_probs=78.7

Q ss_pred             CCceeEEEEEEEcCChHHHHHHhhcCCCCcccc-cc-c--eeeEecCCCCCCeEEEEEEec-CCCcceeeEEEEEEeCCC
Q 046697           33 PNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HF-I--KSCNMHGDGGVGSIREVTVVS-GLPASTSTERLEILDDEK  107 (187)
Q Consensus        33 ~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~-v--~s~~~~G~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~  107 (187)
                      +......+++.|+||+++||+++.|...+..|. |. +  ..++.  +-.+|..-++.+.+ ++..-...-++.++++ +
T Consensus        13 ~~~~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~--d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p-~   89 (175)
T 2lf2_A           13 KENKTITIKREFAAVRAIVWEAFTRAEILDQWWAPKPWKAKTKSM--DFKEGGTWLYAMVGPNGEEHWSICEYAIIKP-I   89 (175)
T ss_dssp             TTTTEEEEEEEESSCHHHHHHHHTCHHHHHHSSSSSSSEEEEEEE--CCSTTCEEEEEEECSSSCEEEEEEEECCCCS-S
T ss_pred             CCCceEEEEEEEcCCHHHHHHHhCCHHHHhhCcCCCCccceEEEE--eccCCCEEEEEEECCCCCEEEeEEEEEEEcC-C
Confidence            345567788899999999999999998866664 32 2  22333  32234333343432 2211136778889987 5


Q ss_pred             CeEEEEEEecc---ccC---CCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHH----HHHHHHHHHHHHHH
Q 046697          108 HILSFRVVGGE---HRL---NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMF----VDTVVKLNLQKLGV  177 (187)
Q Consensus       108 ~~~sY~vveg~---~p~---~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~----~~~~~~~gL~~Lk~  177 (187)
                      +++.|+..-++   .|.   .....++.+.+.+ +|+.+++...   +.     +.+....+    +..=....|+.|++
T Consensus        90 ~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~---~~-----~~~~~~~~~~~~~~~Gw~~~L~~L~~  160 (175)
T 2lf2_A           90 ERFTGKDGFTDASGKLNTEMPRSNWDMRFIDKG-EITEVQYHIS---YD-----DVAQLEATIQMGFKEGITMAMENLDE  160 (175)
T ss_dssp             SEEEEEEEEESSTTCCCTTSCCEEEEEEEEEET-TEEEEEEEEE---CS-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEecCCCCCcCCCCCcEEEEEEEEECC-CCEEEEEEEe---cC-----CHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            88888764321   222   2344455555553 5576765543   11     12222222    23345667899999


Q ss_pred             HHhhc
Q 046697          178 VSMAS  182 (187)
Q Consensus       178 ~le~~  182 (187)
                      .+|..
T Consensus       161 ~le~~  165 (175)
T 2lf2_A          161 LLVSG  165 (175)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            88753

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.42  E-value=3.2e-06  Score=65.07  Aligned_cols=140  Identities=18%  Similarity=0.160  Sum_probs=82.4

Q ss_pred             CCCceeEEEEEEEcCChHHHHHHhhcCCCCcccc-cc---ceeeEec-CCCCCCeEEEEEEe--cCCCcceeeEEEEEEe
Q 046697           32 KPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HF---IKSCNMH-GDGGVGSIREVTVV--SGLPASTSTERLEILD  104 (187)
Q Consensus        32 ~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~---v~s~~~~-G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D  104 (187)
                      .+......++..|+||+++||+++.|...+..|. |.   +..+++. ..|  |..| +.+.  +|.. -.+.-++.+++
T Consensus         9 ~~~~~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~G--G~~~-~~~~~~~G~~-~~~~g~~~ev~   84 (168)
T 3uid_A            9 DLDTLTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHDLRPG--GRVT-YFMTGPDGEK-YAGYWEITAVD   84 (168)
T ss_dssp             ETTTTEEEEEEEESSCHHHHHHHHHSHHHHHHHHCCTTSCCEEEEECCSTT--CEEE-EEEECTTSCE-EEEEEEEEEEE
T ss_pred             cCCCCEEEEEEEEcCCHHHHHHHhCCHHHHhhEeCCCCeeeeEEEEcccCC--cEEE-EEEECCCCCE-EeeEEEEEEEe
Confidence            4556677789999999999999999988765563 32   2223333 223  4554 3343  3321 13677889998


Q ss_pred             CCCCeEEEEEEe----ccccCC---CeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHH----HHHHHHHHHH
Q 046697          105 DEKHILSFRVVG----GEHRLN---NYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMF----VDTVVKLNLQ  173 (187)
Q Consensus       105 ~~~~~~sY~vve----g~~p~~---~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~----~~~~~~~gL~  173 (187)
                      + ++++.|+..-    |.+ ..   .-..++.+.+.+ +|+.+++..   .+.     +.+....+    +..=...+|+
T Consensus        85 p-~~rlv~t~~~~~~~g~p-~~~~~~s~vt~~l~~~~-~gT~lt~~~---~~~-----~~~~~~~~~~~g~~~GW~~~L~  153 (168)
T 3uid_A           85 E-PHSFSFLDGFADEDFNP-NTDLPVSTNVYTFTEHD-GGTRATYVG---TYA-----SAEALQQVLDMGVIEGASSAIN  153 (168)
T ss_dssp             T-TTEEEEEEEEECTTSCB-CSSCCCEEEEEEEEEET-TEEEEEEEE---ECS-----CHHHHHHHHHTTHHHHHHHHHH
T ss_pred             C-CcEEEEEEeeccCCCCc-CCCCCcEEEEEEEEECC-CCEEEEEEE---ecC-----CHHHHHHHHHhcHHHHHHHHHH
Confidence            7 5888887632    322 21   223444444553 567777652   221     12222221    3444567899


Q ss_pred             HHHHHHhhcccCC
Q 046697          174 KLGVVSMASLHGH  186 (187)
Q Consensus       174 ~Lk~~le~~~~~~  186 (187)
                      .|++.++...|.|
T Consensus       154 ~L~~~l~~~~~~~  166 (168)
T 3uid_A          154 QIDALLTATHHHH  166 (168)
T ss_dssp             HHHHHTCSCCC--
T ss_pred             HHHHHHHhhhhcc
Confidence            9999999988766

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.41  E-value=5.6e-06  Score=63.69  Aligned_cols=141  Identities=10%  Similarity=0.038  Sum_probs=81.4

Q ss_pred             CCceeEEEEEEEcCChHHHHHHhhcCCCCcccc-cc-ceeeEecCCCCCCeEEEEEEec-CCCcceeeEEEEEEeCCCCe
Q 046697           33 PNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HF-IKSCNMHGDGGVGSIREVTVVS-GLPASTSTERLEILDDEKHI  109 (187)
Q Consensus        33 ~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~-v~s~~~~G~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~~~  109 (187)
                      +......++..|+||+++||+++.|......|. |. +......++-.+|..-++.+.. ++..-.+.-++.++++ +++
T Consensus         7 ~~~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p-~~r   85 (178)
T 1xfs_A            7 DAELDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTD-EKR   85 (178)
T ss_dssp             CTTTEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEET-TTE
T ss_pred             CCCceEEEEEEecCCHHHHHHHhCCHHHHhhCCCCCCeeeeEEEEeeECCcEEEEEEECCCCCEEEEEEEEEEEeC-CCE
Confidence            344456778899999999999999998866664 32 2211122332345444455542 2211245678888987 588


Q ss_pred             EEEEEEecc--ccCC------------CeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHH----HHHHHHHH
Q 046697          110 LSFRVVGGE--HRLN------------NYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMF----VDTVVKLN  171 (187)
Q Consensus       110 ~sY~vveg~--~p~~------------~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~----~~~~~~~g  171 (187)
                      +.|+..-++  .|..            ....++.+.+.+ +|+.+++...+   . +    .+.....    +..=+...
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~-~gT~l~~~~~~---~-~----~~~~~~~~~~~~~~Gw~~~  156 (178)
T 1xfs_A           86 LIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTS-SGTRYTACAMH---N-T----PGQRKLHEEMGFHEGWGTT  156 (178)
T ss_dssp             EEEESSEEGGGEECCC-----------CCEEEEEEEECS-SSEEEEEEEEC---S-S----HHHHHHHHTTTHHHHHHHH
T ss_pred             EEEEEEEcCCCCccccccccccccccccEEEEEEEEECC-CCEEEEEEEEc---C-C----HHHHHHHHhhhHHHHHHHH
Confidence            888864211  1222            344555565654 56777765441   1 1    1122222    23445678


Q ss_pred             HHHHHHHHhhcc
Q 046697          172 LQKLGVVSMASL  183 (187)
Q Consensus       172 L~~Lk~~le~~~  183 (187)
                      |+.||+.+|+..
T Consensus       157 l~~L~~~le~~~  168 (178)
T 1xfs_A          157 ITQLEELLKQEK  168 (178)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhh
Confidence            899999888653

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.39  E-value=9.8e-06  Score=63.41  Aligned_cols=127  Identities=11%  Similarity=0.069  Sum_probs=80.2

Q ss_pred             CCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEE
Q 046697           32 KPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        32 ~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      ..+.....+++.|+||+++||+++.|......|.+.....+.. .|  |..| +.+.+ .   ...-++.++++. ++++
T Consensus        32 ~~~~~~i~~~~~i~Ap~e~VW~altdp~~l~~W~~~~~~~d~~-~G--g~~~-~~~~~-~---~~~~~v~e~~p~-~rl~  102 (184)
T 2nn5_A           32 ENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGELG-VN--GFWR-FILPD-F---EETMPFTDYAEE-KYLG  102 (184)
T ss_dssp             ETTEEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEECS-TT--CEEE-EEETT-E---EEEEEEEEEETT-TEEE
T ss_pred             CCCCcEEEEEEEeCCCHHHHHHHHcCHHHHHHhCCCccccccC-CC--CEEE-EEEeC-C---CceEEEEEecCC-CEEE
Confidence            4455677788999999999999999999977887654433332 22  4444 44543 2   456688889874 7888


Q ss_pred             EEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          112 FRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       112 Y~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      |+.-       ....++.+.+..++|+.+++... +....+.  ...   . ...-+...|+.|++.+|.
T Consensus       103 ~~~~-------~~~v~~~l~~~~~~gT~l~~~~~-~~~g~~~--~~~---~-~~~GW~~~L~~Lk~~le~  158 (184)
T 2nn5_A          103 VTWD-------TGIIYFDLKEQAPHQTLLVFSES-LPENFTT--PRH---K-DIAGWSIVLNRLKQVVET  158 (184)
T ss_dssp             EEET-------TEEEEEEEEEEETTEEEEEEEEE-ECTTCSS--CHH---H-HHHHHHHHHHHHHHHHHC
T ss_pred             EEEc-------CeEEEEEEEECCCCCEEEEEEEe-ccCCccc--hhh---H-HHHHHHHHHHHHHHHHhc
Confidence            8763       14445566662335676776522 1111111  121   1 344567789999999986

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.36  E-value=2.6e-05  Score=59.64  Aligned_cols=135  Identities=13%  Similarity=0.101  Sum_probs=77.4

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCcccc-cc----ceeeEec-CCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCC
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HF----IKSCNMH-GDGGVGSIREVTVV--SGLPASTSTERLEILDDEK  107 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~----v~s~~~~-G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~  107 (187)
                      ....++..|+||+++||+++.|...++.|. |.    +..+++. -.|  |..+ +.+.  +|.. -.+.-++.++++ +
T Consensus         9 ~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~~~~~~~~~~~~~d~~~G--G~~~-~~~~~~~G~~-~~~~g~v~ev~p-~   83 (166)
T 3put_A            9 TTFVIERRLTAPVARVFRAWSTPESKRQWFACHGEWVPLEYALDFRPG--GTER-NYTADTDGLL-HAYDARYIDIVP-D   83 (166)
T ss_dssp             EEEEEEEEESSCHHHHHHHHHCHHHHHHHHTCC---CCSEEEECCSTT--CEEE-EEEECTTSCE-EEEEEEEEEEET-T
T ss_pred             ceEEEEEEECCCHHHHHHHhCCHHHHHhcCCCCCCceeeEEEeCcccC--CEEE-EEEECCCCCE-EEEEEEEEEEcC-C
Confidence            456678899999999999999988866664 32    2223333 223  4444 4342  3431 136778899987 5


Q ss_pred             CeEEEEEEe--ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          108 HILSFRVVG--GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       108 ~~~sY~vve--g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      +++.|+..-  +..|...-.-++.+.+.+ +|+.+++.......+....  .    .....=....|+.|++.||..
T Consensus        84 ~rlv~t~~~~~~~~~~~~s~vt~~l~~~~-~gT~ltl~~~~~~~~~~~~--~----~~~~~GW~~~L~~L~~~le~~  153 (166)
T 3put_A           84 TRIIYAYEMKLGQTRISASLVTVAFDVEP-SGTRMVFTEQVVFLDGYGD--N----GARLQGTEIGLDNLELFLVRE  153 (166)
T ss_dssp             TEEEEEEEEEETTEEEEEEEEEEEEEECS-SSEEEEEEEEEEEETTCCC--T----THHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEecCCCCCCCceEEEEEEEECC-CCEEEEEEEEecCccchhh--H----HHHHHHHHHHHHHHHHHHhcC
Confidence            888887642  122222222333444443 5677776644322221111  1    123444566789999998864

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.19  E-value=2.6e-05  Score=61.10  Aligned_cols=133  Identities=11%  Similarity=0.083  Sum_probs=80.5

Q ss_pred             CceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCC--------------CcceeeEE
Q 046697           34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGL--------------PASTSTER   99 (187)
Q Consensus        34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~--------------~~~~v~Er   99 (187)
                      ......++..|+||+++||+++.|......|.+..   ++  +-.+|..-++.+....              ..-.+.-+
T Consensus        17 ~~~~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~~---~~--d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~g~   91 (191)
T 2k5g_A           17 DAQSIRFERLLPGPIERVWAWLADADKRARWLAGG---EL--PRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHT   91 (191)
T ss_dssp             CCSSEEEEEEESSSSHHHHHHHHCHHHHTTTSCCC---CC--CSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEE
T ss_pred             CCCeEEEEEEeCCCHHHHHHHHcCHHHHhhcCCCC---CC--CccCCCEEEEEEcCCccccccCcccccccCCCceeEEE
Confidence            34456688899999999999999999876776542   22  2224554455554310              11146678


Q ss_pred             EEEEeCCCCeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          100 LEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       100 L~~~D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      +.++++ +++++|+...++.+ .....++.+.+.+ +|+.+++...-  +  +.   .+ ....+..-....|+.|++.+
T Consensus        92 v~e~~p-p~rl~~~~~~~~~~-~~~~v~~~l~~~~-~gT~l~~~~~~--~--~~---~~-~~~~~~~GW~~~L~~L~~~l  160 (191)
T 2k5g_A           92 LLRCEP-PRVLALTWGGGAGE-APSEVLFELSEAG-EQVRLVLTHTR--L--AD---RA-AMLDVAGGWHAHLAVLAGKL  160 (191)
T ss_dssp             EEEEET-TTEEEEECCCCSSS-SCCEEEEEEEECS-SSEEEEEEEEC--C--CS---HH-HHHHHTTTTTTHHHHHHHHH
T ss_pred             EEEecC-CCEEEEEeecCCCC-CCEEEEEEEEEcC-CCEEEEEEEec--C--CC---HH-HHHHHHHhHHHHHHHHHHHH
Confidence            889987 58899987654332 2334455555554 56767654331  1  11   11 22233333456788999988


Q ss_pred             hhc
Q 046697          180 MAS  182 (187)
Q Consensus       180 e~~  182 (187)
                      |..
T Consensus       161 e~~  163 (191)
T 2k5g_A          161 AGQ  163 (191)
T ss_dssp             HTS
T ss_pred             CCC
Confidence            865

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=98.08  E-value=0.00046  Score=53.28  Aligned_cols=141  Identities=10%  Similarity=-0.063  Sum_probs=85.6

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCe-EEEEEEecCCCc---ceeeEEEEEEeCCCCeEEEEEE
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGS-IREVTVVSGLPA---STSTERLEILDDEKHILSFRVV  115 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~-vR~lt~~~g~~~---~~v~ErL~~~D~~~~~~sY~vv  115 (187)
                      .+.+|++|++++|+++.|...-+.|-|.+.++++.... .+. +-.+.++...+.   ..+.-+-...|.. .++...+.
T Consensus        31 ~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~~-~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~-g~~~i~~~  108 (189)
T 3qsz_A           31 GEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKAT-DTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGD-GAITVRVE  108 (189)
T ss_dssp             EEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEEC-SSEEEEEEEECCSSSCCCEEEEEEEEEEECTT-SCEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEeec-CCceEEEEEeecCCCcCCcceEEEEEEEECCC-CeEEEEEE
Confidence            45788999999999999999977999999999988321 232 222333322111   1222222222333 34433333


Q ss_pred             ecc--cc-------CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          116 GGE--HR-------LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       116 eg~--~p-------~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      ...  .|       +..+.+...+.| +++++++++..   ..|+...........++....-..|++|++.+++..+.|
T Consensus       109 ~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~---~~dp~G~iP~~lvn~~~~~~~~~~l~~L~k~~~~~~~~~  184 (189)
T 3qsz_A          109 AVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQM---HASPGGSIPSWLANQTVVETPFGTLKALRSHLRQAHLEH  184 (189)
T ss_dssp             ECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEE---EECSCSSSCHHHHHHTTTHHHHHHHHHHHHHHTC-----
T ss_pred             cCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEE---EeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence            321  12       466778888888 65557777553   446554566667777777777888999999999888765

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=97.93  E-value=0.00017  Score=54.94  Aligned_cols=137  Identities=9%  Similarity=0.017  Sum_probs=73.5

Q ss_pred             CCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeE
Q 046697           32 KPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHIL  110 (187)
Q Consensus        32 ~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~  110 (187)
                      .+......++..|+||+++||+++.|...+..|.+. ..+++. -.|  |..+   +..|    .+.=++.++++ ++++
T Consensus        15 ~~~~~~i~~~r~~~ap~e~Vw~A~Tdpe~l~~W~~g-~~~~~d~~~G--G~~~---~~~G----~~~g~v~ev~p-~~rl   83 (158)
T 3ni8_A           15 YFQGMSFEITEEYYVPPEVLFNAFTDAYTLTRLSRG-SLAEVDLKVG--GKFS---LFSG----SILGEFTEITK-PHKI   83 (158)
T ss_dssp             ---CCCEEEEEEESSCHHHHHHHHHCHHHHHHHTTT-SCCEECCSTT--CEEE---ETTT----TEEEEEEEEET-TTEE
T ss_pred             CCCCceEEEEEEECCCHHHHHHHhcCHHHHHhhcCC-CccEEEccCC--CEEE---EecC----CEEEEEEEEeC-CcEE
Confidence            344556778899999999999999998887667652 123333 223  4333   4444    35667788887 4788


Q ss_pred             EEEEEeccccCCC-eeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 046697          111 SFRVVGGEHRLNN-YRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLN-LQKLGVVSMA  181 (187)
Q Consensus       111 sY~vveg~~p~~~-y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~g-L~~Lk~~le~  181 (187)
                      .|+---.+.+... -.-++.+.+..++++.+++...-  +........+........=.... |+.|++.||.
T Consensus        84 v~tw~~~~~~~~~~s~vt~~l~~~~~~~T~ltl~~~g--~~~~~~~~~~~~~~~~~~GW~~~~L~~Lk~~Le~  154 (158)
T 3ni8_A           84 VEKWKFRDWNECDYSTVTVEFISVKENHTKLKLTHNN--IPASNKYNEGGVLERCKNGWTQNFLHNIEVILGY  154 (158)
T ss_dssp             EEEEEETTSCSSCCEEEEEEEEEEETTEEEEEEEEEC--CCSSCTTCCCCHHHHHHHHHHHTHHHHHHHTSCC
T ss_pred             EEEEEecCCCCCCcEEEEEEEEecCCCCEEEEEEEEc--cCchhhhccchhHHHHHhChhHHHHHHHHHHhCc
Confidence            7765433222222 23334444533355777765431  11111111011122233344554 8888888763

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=97.93  E-value=0.00016  Score=54.49  Aligned_cols=136  Identities=10%  Similarity=-0.027  Sum_probs=72.6

Q ss_pred             eeEEEEEEEcCChHHHHHHhhcCCCCccc-cccc------eeeEecCC-CCCCeEEEEEEecCCCcceeeEEEEEEeCCC
Q 046697           36 CVSLITQRIDAPAHVVWPFVRRFDNPQKY-KHFI------KSCNMHGD-GGVGSIREVTVVSGLPASTSTERLEILDDEK  107 (187)
Q Consensus        36 ~~~~v~~~I~apae~VW~vi~df~~~~~w-~p~v------~s~~~~G~-g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~  107 (187)
                      ....++..|+||+++||+++.+  .+..| .|..      ..++++ . |  |.. .++..+|..  ...=++.++|+ .
T Consensus         4 ~~i~~~r~~~Ap~e~Vw~A~Td--~l~~W~~p~~~~~~~~~~~~~d-r~G--G~~-~~~~~~G~~--~~~g~v~ev~p-p   74 (155)
T 1zxf_A            4 PFVRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVD-KKG--GRW-YEIDEQGEE--HTFGLIRKVDE-P   74 (155)
T ss_dssp             SCEEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEE-TTT--TEE-ECCCTTTSC--CCCEEEEEEET-T
T ss_pred             ceEEEEEEEeCCHHHHHHHHHh--hHHhhcCCCccccCCCceEEEE-CCC--CEE-EEECCCCCe--EeEEEEEEECC-C
Confidence            3456888999999999999999  34444 4432      234444 2 2  443 233334431  11236778887 5


Q ss_pred             CeEEEEEE-ecc---ccCCCeeeEEEEEEecCCC-ceEEEEEEEEeecCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          108 HILSFRVV-GGE---HRLNNYRSVTSVNEFQKGG-EIYTIVTESYVVDIPEGN-TVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       108 ~~~sY~vv-eg~---~p~~~y~a~~~v~~~~~~g-~~~t~~~~~~~~d~p~~~-~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      ++++|+-- ++.   .|...-.-++.+.+.+ +| +++++....  ++ ..+. ..+.....+..=....|+.|++.+++
T Consensus        75 ~rl~~tw~~~~~~~~~~~~~s~vt~~l~~~~-~g~T~ltl~~~~--~~-~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~  150 (155)
T 1zxf_A           75 DTLVIGWRLNGFGRIDPDNSSEFTVTFVADG-QKKTRVDVEHTH--FD-RMGTKHAKRVRNGMDKGWPTILQSFQDKIDE  150 (155)
T ss_dssp             TEEEEECCCSSSSSCCCSSCCCEEEEEEEET-TTEEEEEEEECS--ST-TSCHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEecCCCCCCCCCCcEEEEEEEEECC-CCcEEEEEEEec--cc-ccccchhHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            88888842 321   2222233455555554 45 777755331  11 1111 11222222222246788999998887


Q ss_pred             ccc
Q 046697          182 SLH  184 (187)
Q Consensus       182 ~~~  184 (187)
                      ..+
T Consensus       151 ~~a  153 (155)
T 1zxf_A          151 EGA  153 (155)
T ss_dssp             HHT
T ss_pred             hhc
Confidence            543

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=97.86  E-value=8.1e-05  Score=55.19  Aligned_cols=129  Identities=9%  Similarity=0.063  Sum_probs=74.2

Q ss_pred             CceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      .+....++..|+||+++||+++.|...+..|.+.....+.. .|  |.   +++.+|.    +.=++.++++ ++++.|+
T Consensus         9 ~~~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~~~~~~d~~-~G--g~---~~~~~G~----~~g~v~e~~p-~~~l~~~   77 (145)
T 1x53_A            9 PTCKITLKETFLTSPEELYRVFTTQELVQAFTHAPATLEAD-RG--GK---FHMVDGN----VSGEFTDLVP-EKHIVMK   77 (145)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCBCCCS-TT--CC---CBBTTTT----EECCEEEEET-TTEEEEE
T ss_pred             cccEEEEEEEECCCHHHHHHHhCCHHHHHHhcCCCceEECC-CC--CE---EEEECCe----eEEEEEEEeC-CCEEEEE
Confidence            34566788899999999999999998877786443222222 22  22   3343442    4446677876 5888888


Q ss_pred             EEeccccCCCe-eeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Q 046697          114 VVGGEHRLNNY-RSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKL-NLQKLGVVSMASL  183 (187)
Q Consensus       114 vveg~~p~~~y-~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~-gL~~Lk~~le~~~  183 (187)
                      -...+.|...+ .-++.+.+. ++++.+++....+    +.    ... ..+..-... .|+.||+.+|.-.
T Consensus        78 ~~~~~~~~~~~~~v~~~l~~~-~~gT~l~~~~~~~----~~----~~~-~~~~~Gw~~~~l~~L~~~le~g~  139 (145)
T 1x53_A           78 WRFKSWPEGHFATITLTFIDK-NGETELCMEGRGI----PA----PEE-ERTRQGWQRYYFEGIKQTFGYGA  139 (145)
T ss_dssp             EEETTSCTTCCEEEEEECCBC-SSCEEEEEEEEEE----EH----HHH-HHHHHTTHHHHHHHHHHHTCCCC
T ss_pred             EecCCCCCCCcEEEEEEEEEC-CCCEEEEEEEECC----CH----HHH-HHHHhchhHHHHHHHHHHHhcCc
Confidence            65544332322 233333333 3567777653211    11    112 233333444 5899999887643

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=97.63  E-value=0.00052  Score=53.54  Aligned_cols=126  Identities=16%  Similarity=0.151  Sum_probs=73.4

Q ss_pred             CCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEE
Q 046697           33 PNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSF  112 (187)
Q Consensus        33 ~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY  112 (187)
                      +......++..|+||+++||+++.|...+..|.+..   +  ++-.+|..  +++...     ..=++.++++ ++++.|
T Consensus        18 ~~~~~i~~~r~i~Appe~Vw~alTdpe~l~~W~~p~---~--~d~~~Gg~--~~~~~~-----~~g~v~e~~p-p~rl~~   84 (181)
T 4fpw_A           18 GEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP---K--GDLREGGN--FALQGN-----ASGDILRCEP-PRRLTI   84 (181)
T ss_dssp             EEEEEEEEEEEESSCHHHHHHHHHCHHHHHHHSCCE---E--SCCSTTCE--EEESSS-----CEEECCEEET-TTEEEE
T ss_pred             CCCceEEEEEEECCCHHHHHHHHcChHHHhhccCCC---c--cCCCCCCE--EEEEec-----CCEEEEEEcC-CcEEEE
Confidence            345567788999999999999999998866675432   2  22123433  223211     1235667776 589999


Q ss_pred             EEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697          113 RVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASL  183 (187)
Q Consensus       113 ~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~  183 (187)
                      +...++.+  ...-++.+.+. ++|+.+++....    .+    ++.. ..+..=....|+.|++.|+...
T Consensus        85 tw~~~~~~--~s~vt~~l~~~-~~gT~Ltl~~~~----~~----~e~~-~~~~~GW~~~L~~L~~~L~G~~  143 (181)
T 4fpw_A           85 SWVYEGKP--DSEVELRLSEE-GDGTLLELEHAT----TS----EQML-VEVGVGWEMALDFLGMFIRGDL  143 (181)
T ss_dssp             EEBCTTSC--CEEEEEEEEEE-TTEEEEEEEEEE----SC----HHHH-HHHHHHHHHHHHHHHHHC----
T ss_pred             EEEcCCCC--cEEEEEEEEEC-CCcEEEEEEEEc----CC----HHHH-HHHHHhHHHHHHHHHHHhCCCC
Confidence            87654432  22344555554 356777765432    11    1222 2334444788999999987543

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.62  E-value=0.0016  Score=48.66  Aligned_cols=128  Identities=9%  Similarity=0.056  Sum_probs=79.2

Q ss_pred             eeEEEEEEEcCCh-HHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           36 CVSLITQRIDAPA-HVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        36 ~~~~v~~~I~apa-e~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      -...++.+|+||+ ++||++|+.-.+++.|...  .+...|     ..-+++..+.+   ...=+++++++ +++++|+-
T Consensus         4 ~~i~~e~~i~A~~~~~VW~~IStPegL~~Wfad--~v~~~g-----~~~~F~w~~~~---~~~~~v~~~~~-~~~i~FrW   72 (136)
T 2lio_A            4 EKIHLEYLLNATSKNILWSAISTPTGLEDWFAD--KVVSDD-----KTVTFCWGKTE---QRQAGIVAIRA-YSFIRFHW   72 (136)
T ss_dssp             EEEEEEEEECTTSCTHHHHGGGSHHHHTTTSSS--EEEEET-----TEEEEESSSSS---EEEEEEEEEET-TTEEEEEE
T ss_pred             CcEEEEEEecCChHHHHHHHhCChhhhhcccCC--CCcccC-----ceEEEEeCCCC---cEeEEEEEEcC-CCEEEEEc
Confidence            3455778999999 9999999999998888644  233323     22234443322   56678888886 59999998


Q ss_pred             EeccccCCCeeeEEEEEEecC-CCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046697          115 VGGEHRLNNYRSVTSVNEFQK-GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLHGH  186 (187)
Q Consensus       115 veg~~p~~~y~a~~~v~~~~~-~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~~~  186 (187)
                      .+.+.  .++...+.+...+. ++..++.. -   +.  .   ... ..-+.......|+.||+.++.+-|.|
T Consensus        73 ~~~~~--~~~~~e~~l~~~~~t~~~~L~vt-d---Fa--~---~~~-~e~~~~gW~~~l~~Lk~~lg~~~~~~  133 (136)
T 2lio_A           73 LDDEN--ERDYFEIKMSYNELTGDYVLEIT-D---FS--E---ADE-ADDLKELWDSQVSKLRRTCGFLEHHH  133 (136)
T ss_dssp             SSSSS--SSCEEEEEEEECTTTSCEEEEEE-E---EE--C---HHH-HHHHHHHHHHHHHHHHHHTSCCCCCC
T ss_pred             cCCCC--CceEEEEEEEecCCCCcEEEEEe-c---CC--C---ccc-hhHHHhhHHHHHHHHHHHhhhhcccc
Confidence            76432  23333444333321 23444433 1   11  1   112 23366777888999999999987765

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=97.53  E-value=0.0075  Score=47.40  Aligned_cols=124  Identities=13%  Similarity=0.083  Sum_probs=74.8

Q ss_pred             CceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ......++.+++||+++||+++.|...+..|.+.   +++.  -.+|..  +.|...     ..-++.++++ .+++.|+
T Consensus        30 ~~~~l~i~R~f~Ap~e~VW~AlTdpe~l~~W~~~---~~~d--~r~GG~--~~~~~~-----~~g~v~ev~p-p~rL~~t   96 (192)
T 2luz_A           30 EARSIIIRQRYDAPVDEVWSACTDPNRINRWFIE---PKGD--LREGGN--FALQGN-----ASGDILRCEP-PRRLTIS   96 (192)
T ss_dssp             EEEEEEEEEEESSCHHHHHHHHHCHHHHTTTSCC---EEEC--CSTTSE--EEETTS-----EEEEEEEEET-TTEEEEE
T ss_pred             CceEEEEEEEeCCCHHHHHHHHcCHHHHheeeCC---Cccc--CccCcE--EEeecc-----ccceEEEEec-CeeEEEE
Confidence            3446678899999999999999999887778653   2333  123332  234322     2345777887 5888888


Q ss_pred             EEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          114 VVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       114 vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      -...+.+  .-.-++.+.+.+ +|+.+++....    .+    ++....+-.+ ...+|+.|+..|+..
T Consensus        97 w~~~~~~--~~~vt~~L~~~g-~gT~Ltl~h~~----~~----~~~~~~~~~G-W~~~Ld~L~~~L~g~  153 (192)
T 2luz_A           97 WVYEGKP--DSEVELRLSEEG-DGTLLELEHAT----TS----EQMLVEVGVG-WEMALDFLGMFIRGD  153 (192)
T ss_dssp             EEESSSC--EEEEEEEEEEET-TEEEEEEEEEE----SC----HHHHHHHHHH-HHHHHHHHHHHHTTC
T ss_pred             EeecCCC--CceEEEEEEEcC-CcEEEEEEEEC----CC----HHHHHHHhcc-HHHHHHHHHHHhCCC
Confidence            6543321  122344444543 56777765432    11    2333333333 478899999999853

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.31  E-value=0.0018  Score=57.62  Aligned_cols=99  Identities=16%  Similarity=0.173  Sum_probs=71.7

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCC--CCCeEEEEEEecCCCcceeeEEE--EEEeCCCCeEEEE
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDG--GVGSIREVTVVSGLPASTSTERL--EILDDEKHILSFR  113 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g--~vG~vR~lt~~~g~~~~~v~ErL--~~~D~~~~~~sY~  113 (187)
                      ..+++|++|++.||+.+.+.+++..|.|....+++. +.|  .+|++- +.+..|  . ...-++  .++|+ .++|...
T Consensus         4 ~~~~~i~~p~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~-~~~~~~--~-~w~~~~~~t~~~~-~~~F~d~   78 (516)
T 3oh8_A            4 TTSHFIPFPREMVWDWHTRKGAVARLTPPFIPLNPITQAERLADGTTI-FSLPAG--L-KWVARHDLSGFLN-GSRFTDV   78 (516)
T ss_dssp             EEEEEESSCHHHHHHHHHSTTHHHHHSCTTSSCEECSCCSCSSSCEEE-EECSTT--C-EEEEEECGGGCBT-TTEEEEE
T ss_pred             EEEEEccCCHHHHHHHhcCcchHHHhCCCCCceEEecCCCCCcCCeEE-EecCCC--c-EEEEEEccccccC-CCeEEEE
Confidence            356799999999999999999987888888888887 333  367765 666544  2 556677  78876 5899999


Q ss_pred             EEecccc-CCCeeeEEEEEEecCCCceEEEE
Q 046697          114 VVGGEHR-LNNYRSVTSVNEFQKGGEIYTIV  143 (187)
Q Consensus       114 vveg~~p-~~~y~a~~~v~~~~~~g~~~t~~  143 (187)
                      .+.|+++ +....-+..+.+.+ +|+.++-.
T Consensus        79 ~~~gp~~~~~~w~h~h~f~~~~-~gt~~~d~  108 (516)
T 3oh8_A           79 CLTAPVKALANWRHVHNFVDQD-GGTLITDS  108 (516)
T ss_dssp             CCSCSSGGGSSCEEEEEEEEET-TEEEEEEE
T ss_pred             eccCcccceeeeEEEEEEEEcC-CCcEEEEE
Confidence            9998854 45666666666664 45555543

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=97.22  E-value=0.021  Score=44.48  Aligned_cols=140  Identities=11%  Similarity=0.029  Sum_probs=82.7

Q ss_pred             EEEEEE-cCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcc---eeeEE-EEEEeCCCCeEEEE
Q 046697           39 LITQRI-DAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPAS---TSTER-LEILDDEKHILSFR  113 (187)
Q Consensus        39 ~v~~~I-~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~---~v~Er-L~~~D~~~~~~sY~  113 (187)
                      -...+| ++|+++|++++.|....+.|-+.+.++++...++ ..+-.+.+....+.+   .+..| ...+++.+.++.+.
T Consensus        55 k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~~~-~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~i  133 (214)
T 1ln1_A           55 KVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNG-ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVI  133 (214)
T ss_dssp             EEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETT-EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEE
T ss_pred             EEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEeccCC-CEEEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEEE
Confidence            346788 5999999999999877778999999998872221 344445554322221   22222 22344333322111


Q ss_pred             ---EEec-ccc-------CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          114 ---VVGG-EHR-------LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       114 ---vveg-~~p-------~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                         -++. ..|       ...|.+...+.|.+++++.+++..   ..|+...........++.......|..|++.+++.
T Consensus       134 ~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~---~~Dp~G~iP~~l~n~~~~~~~~~~l~~l~k~~~~y  210 (214)
T 1ln1_A          134 LARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYY---FDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNY  210 (214)
T ss_dssp             EEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEE---EECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             EEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEE---EECCCCcccHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence               1221 122       345677777777755556666543   44654445555666666667777888888887653

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=95.42  E-value=0.2  Score=38.17  Aligned_cols=63  Identities=10%  Similarity=0.099  Sum_probs=48.4

Q ss_pred             hHHHHHHhhc-CCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697           48 AHVVWPFVRR-FDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        48 ae~VW~vi~d-f~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      .+++|.-+.. -.+|..+.|.|.+|++..++...-.|.++|+.+    .++|++.- .+ ..++.|.+..
T Consensus        22 r~QlW~GL~~kar~p~~Fvp~i~~c~Vlse~~~~~~R~l~fg~~----~i~e~vtl-~~-~~~v~f~~~~   85 (157)
T 2ffs_A           22 RLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLHRRLYLPGL----VVEDEVVL-KA-PDSAHYSIKP   85 (157)
T ss_dssp             HHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSSEEEEEEEETTE----EEEEEEEE-ET-TTEEEEEECC
T ss_pred             HHHHHHHHHHHhcChhhcccccCeEEEEecCCCeEEEEEEECCC----ccceEEEE-cC-CcEEEEEccc
Confidence            4789998765 445888889999999983322377899999876    68899774 44 5889999977

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=91.92  E-value=3.6  Score=32.05  Aligned_cols=139  Identities=9%  Similarity=-0.083  Sum_probs=70.7

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEecC-CCCCCeEEEEEEecCC----Cc-ceeeEEEEEEeCCCCeEEEE
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG-DGGVGSIREVTVVSGL----PA-STSTERLEILDDEKHILSFR  113 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G-~g~vG~vR~lt~~~g~----~~-~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ...+|++|+++|++++.|...-+.|-+.+..++++. -+..-.|-...+....    .. ..+.-|-..-++.+..+...
T Consensus        71 ~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~  150 (224)
T 1jss_A           71 AQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGV  150 (224)
T ss_dssp             EEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHhCcccccccccceeeEEEEEEcCCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEe
Confidence            356889999999999999777678999999998862 1211122222232211    11 12222222222222222111


Q ss_pred             EEecc-cc-----CCCeeeEEEEEEecCC--CceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          114 VVGGE-HR-----LNNYRSVTSVNEFQKG--GEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       114 vveg~-~p-----~~~y~a~~~v~~~~~~--g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      =++.+ .+     ...+.+...+.|.+++  .+.+++   ....|+.--........++....-..+++|++.+++
T Consensus       151 Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~---~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~  223 (224)
T 1jss_A          151 SVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTG---YIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGLRK  223 (224)
T ss_dssp             ECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEE---EECEECCSCCCHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             eeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEE---EEEeCCCCCccHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            12211 11     2334455666676432  244444   345564333445555555555555667777777654

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=90.51  E-value=5  Score=31.15  Aligned_cols=140  Identities=9%  Similarity=-0.046  Sum_probs=72.6

Q ss_pred             EEEEEcCChHHHH-HHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEec--CCCc---ceeeEEEEEEeCCCCeEEE
Q 046697           40 ITQRIDAPAHVVW-PFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVS--GLPA---STSTERLEILDDEKHILSF  112 (187)
Q Consensus        40 v~~~I~apae~VW-~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~--g~~~---~~v~ErL~~~D~~~~~~sY  112 (187)
                      +..+|++|+++|+ .++.|....+.|-+.+..++++.. +..-.|-.....+  ..+.   ..+.-|-...++....+..
T Consensus        70 ~~~~v~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~  149 (229)
T 1em2_A           70 LKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSG  149 (229)
T ss_dssp             EEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEE
T ss_pred             EEEEecCCHHHHHHHHHhCccchhhcccccceEEEEEecCCCeEEEEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEE
Confidence            4567899999999 888888887799999999988621 1111222222222  1222   1222222222322211111


Q ss_pred             EEEecc-cc-C------CCeeeEEEEEEecC--CCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          113 RVVGGE-HR-L------NNYRSVTSVNEFQK--GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       113 ~vveg~-~p-~------~~y~a~~~v~~~~~--~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      .=++.+ .| .      ..+.+...+.|..+  +.+.++++   ...|+..-........++....-.-+++|++.+++.
T Consensus       150 ~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~---~~~Dp~G~iP~~l~n~~~~~~~~~~~~~Lr~~~~~~  226 (229)
T 1em2_A          150 IATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWI---LNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISEL  226 (229)
T ss_dssp             EECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEE---ECEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEE---EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            112221 22 2      23445556667642  33556654   344543224444455555555556688888887764

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=87.34  E-value=9.4  Score=30.13  Aligned_cols=140  Identities=13%  Similarity=0.016  Sum_probs=74.4

Q ss_pred             EEcCChHHHHHHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEecCCCcc---eeeEE-EEEE---eCCC-Ce---E
Q 046697           43 RIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVSGLPAS---TSTER-LEIL---DDEK-HI---L  110 (187)
Q Consensus        43 ~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~g~~~~---~v~Er-L~~~---D~~~-~~---~  110 (187)
                      ..+++++.|++++.|+...+.|-+.+..+++... +..+.+-.+.++...+.+   .+.-| ....   ++.+ ..   +
T Consensus        81 ~~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~i~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~  160 (255)
T 2e3n_A           81 VKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVC  160 (255)
T ss_dssp             EETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEEEEETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEE
T ss_pred             EcCCCHHHHHHHHhCcchHhhhhhhcceeEEEEEcCCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEE
Confidence            3469999999999999887899999999988722 222445555555422221   12222 2222   1111 12   2


Q ss_pred             EEEEEecccc-CCCe-eeEEE--------EEEe-cC-------CCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHH
Q 046697          111 SFRVVGGEHR-LNNY-RSVTS--------VNEF-QK-------GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNL  172 (187)
Q Consensus       111 sY~vveg~~p-~~~y-~a~~~--------v~~~-~~-------~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL  172 (187)
                      ++++.-...| ..+| ++...        +.+. ++       +++.+++   ....|+...........++...+-..|
T Consensus       161 ~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~---~~~~Dp~G~iP~~lvn~~~~~~~~~~l  237 (255)
T 2e3n_A          161 NFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITY---VANVNPGGWAPASVLRAVAKREYPKFL  237 (255)
T ss_dssp             EEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEE---EEEEECSSCCCHHHHHHHHHHHHHHHH
T ss_pred             EeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEE---EEEeCCCCccCHHHHHHHHhccccHHH
Confidence            3333322222 2333 23321        1111 11       1233443   345565444555556666666777789


Q ss_pred             HHHHHHHhhcccC
Q 046697          173 QKLGVVSMASLHG  185 (187)
Q Consensus       173 ~~Lk~~le~~~~~  185 (187)
                      +.|++.+++...+
T Consensus       238 ~~L~k~v~~~~~~  250 (255)
T 2e3n_A          238 KRFTSYVQEKTAG  250 (255)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccC
Confidence            9999988766544

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=86.99  E-value=9.1  Score=29.63  Aligned_cols=140  Identities=8%  Similarity=-0.095  Sum_probs=69.8

Q ss_pred             EEEEEcCChHHHHHHh--hcCCCCccccccceeeEec-CCCCCCeEEE-EEEec-CCCc---ceeeEEEEEEeCCCCe-E
Q 046697           40 ITQRIDAPAHVVWPFV--RRFDNPQKYKHFIKSCNMH-GDGGVGSIRE-VTVVS-GLPA---STSTERLEILDDEKHI-L  110 (187)
Q Consensus        40 v~~~I~apae~VW~vi--~df~~~~~w~p~v~s~~~~-G~g~vG~vR~-lt~~~-g~~~---~~v~ErL~~~D~~~~~-~  110 (187)
                      ...+|++++++|++++  .|....+.|-+.+..++++ --++...|-. ++... +.+.   ..+.-|-...++.+.. +
T Consensus        71 ~~~~v~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i~~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi  150 (231)
T 2r55_A           71 GEGIVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISS  150 (231)
T ss_dssp             EEEEESSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEECSSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEE
T ss_pred             EEEEECCCHHHHHHHHHhhCcchhhhhccccceeEEEEEcCCCEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEE
Confidence            3567899999999999  7777778899999998876 2221222311 11111 1111   1222222223222222 1


Q ss_pred             -EEEEEeccc-cCCCe------eeEEEEEEec--CCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          111 -SFRVVGGEH-RLNNY------RSVTSVNEFQ--KGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       111 -sY~vveg~~-p~~~y------~a~~~v~~~~--~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                       ..++.-... +..+|      .+...+.|..  ++++.++++.   ..|+..-.....+..++....-..++.|++.++
T Consensus       151 ~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~---~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~  227 (231)
T 2r55_A          151 NATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFF---HTDLSGYLPQNVVDSFFPRSMTRFYANLQKAVK  227 (231)
T ss_dssp             EEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEE---CEECCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEE---EeCCCCCccHHHHHHHHhHhHHHHHHHHHHHHH
Confidence             222321122 23333      3444555654  2346666543   446433343445555555555567788888776


Q ss_pred             hc
Q 046697          181 AS  182 (187)
Q Consensus       181 ~~  182 (187)
                      +.
T Consensus       228 ~~  229 (231)
T 2r55_A          228 QF  229 (231)
T ss_dssp             GG
T ss_pred             Hh
Confidence            53

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=83.28  E-value=14  Score=28.46  Aligned_cols=137  Identities=8%  Similarity=-0.020  Sum_probs=69.6

Q ss_pred             EEEEEcCChHHHHHHh-hcCCCCccccccceeeEecCC-CCCCeEEEEEEec--CCCc---ceeeEEEEEEeCCCCeEE-
Q 046697           40 ITQRIDAPAHVVWPFV-RRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVS--GLPA---STSTERLEILDDEKHILS-  111 (187)
Q Consensus        40 v~~~I~apae~VW~vi-~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~--g~~~---~~v~ErL~~~D~~~~~~s-  111 (187)
                      ...+|++|+++|++++ .|....+.|-+.+..++++.. +.--.|-......  ..+.   ..+.-|....++ +..+. 
T Consensus        59 ~~~~v~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~-~~~vi~  137 (221)
T 3p0l_A           59 LEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFITHELAAEAAGNLVGPRDFVSVRCAKRRG-STCVLA  137 (221)
T ss_dssp             EEEEESSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEECSSSEEEEEEEECC---CCSCCEEEEEEEEEEECS-SCEEEC
T ss_pred             EEEEEcCCHHHHHHHHHhccchhhhcCcchheEEEEEecCCCeEEEEEeeccccCCccCCceEEEEEEEEEcC-CeEEEE
Confidence            3467899999999998 588887789999999988622 2111122221222  1111   122222222222 22221 


Q ss_pred             EEEEec-ccc-CCC------eeeEEEEEEecCC--CceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          112 FRVVGG-EHR-LNN------YRSVTSVNEFQKG--GEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       112 Y~vveg-~~p-~~~------y~a~~~v~~~~~~--g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      ..=++. ..| ..+      +.+...+.|.+++  ++.++++   ...|+-.-...-.+..++....-..+++|++.++
T Consensus       138 ~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~---~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~~  213 (221)
T 3p0l_A          138 GMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWL---LSIDLKGWLPKSIINQVLSQTQVDFANHLRKRLE  213 (221)
T ss_dssp             CEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEE---ECEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEE---EEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111222 122 223      3455566666532  2444443   4556543444445555544444456888888877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	1e-25
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	6e-24
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	2e-22
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	4e-20
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	1e-19
d3cnwa1	138	d.129.3.8 (A:3-140) Uncharacterized protein XoxI {	3e-17
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	1e-16
d2d4ra1	146	d.129.3.6 (A:2-147) Hypothetical protein TTHA0849	0.001
d2rera1	155	d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, c	0.002

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score = 94.6 bits (235), Expect = 1e-25
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 46  APAHVVWPFVRRFDN--PQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEIL 103
           +   +   FV   D   P+      KS  + GDGG G+++ +T+  G P +T T R++ +
Sbjct: 14  SAEKIFQGFVIDVDTVLPKAAPGAYKSVEIKGDGGPGTLKIITLPDGGPITTMTLRIDGV 73

Query: 104 DDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIV--TESYVVDIPEGNTVEDTK 161
           + E     + V+ G+  L    S+ +        +  +I   T  +          E+ K
Sbjct: 74  NKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIK 133

Query: 162 MFVDTVVKL 170
              +    L
Sbjct: 134 YANEQNTAL 142

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score = 90.0 bits (223), Expect = 6e-24
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 46  APAHVVWPFVRRFDN--PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEI 102
             A +   F+   D   P+     I S     G+GG G+I+++    G P     +R++ 
Sbjct: 14  PAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDE 73

Query: 103 LDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTV--EDT 160
           +D      ++ V+ G    +    +++  +     +   ++  S        + V  E  
Sbjct: 74  VDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQV 133

Query: 161 KMFVDTVVKL 170
           K   +    L
Sbjct: 134 KASKEMGETL 143

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 86.5 bits (214), Expect = 2e-22
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 46  APAHVVWPFVRRFDN--PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEI 102
            P  +   FV   DN  P+     IK   +  GDGG G+I+++T   G        +++ 
Sbjct: 14  PPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDS 73

Query: 103 LDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTV--EDT 160
           +D E +  S+ ++ G+   +    ++   +        +I+  +          +  E  
Sbjct: 74  IDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHV 133

Query: 161 KMFVDTVVKL 170
           K   +    L
Sbjct: 134 KAGKEKASNL 143

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 80.3 bits (198), Expect = 4e-20
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 46  APAHVVWPFVRRFDN-PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEIL 103
           APA +    V+  D    K    I+S     G+GG G+I+++T++ G        ++E +
Sbjct: 14  APARLYKALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHKIEAV 73

Query: 104 DDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESY 147
           D+     ++ +VGG    +    ++   +  +G    +I   + 
Sbjct: 74  DEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTI 117

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 78.8 bits (194), Expect = 1e-19
 Identities = 19/116 (16%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 46  APAHVVWPFVRRFDN--PQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEIL 103
           APA +     +  D   P+  +       + G+GG G+I+++  +     S    +L+ +
Sbjct: 14  APAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAI 73

Query: 104 DDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVED 159
           D+     ++ ++GGE    +   ++  ++   G +  +I   +      +G+ + +
Sbjct: 74  DEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFH-TKGDVLSE 128

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

 Score = 72.1 bits (176), Expect = 3e-17
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 9/135 (6%)

Query: 41  TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERL 100
           +  I      VW  +  F++   +  +I S  +           V  ++     T  ERL
Sbjct: 7   SMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEG------GRVRHLANPDGDTIIERL 60

Query: 101 EILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDT 160
           E+ +D++   ++ ++     + NY S   V E  +     ++V  S     P   + E+ 
Sbjct: 61  EVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNT--SLVEWSGTFT-PVEVSDEEA 117

Query: 161 KMFVDTVVKLNLQKL 175
                 +    L+ L
Sbjct: 118 INLFHGIYSDGLKAL 132

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 70.8 bits (173), Expect = 1e-16
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 46  APAHVVWPFVRRFDN-PQKYKHFIKSCNMHG-DGGVGSIREVTVVSGLPASTSTERLEIL 103
           APA +     +  D   QK    I+S  +   +GGVG+I+++T   G   S   ++++ +
Sbjct: 14  APAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAI 73

Query: 104 DDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVT 144
           D+      + +VGG     +   ++   +   G    +I  
Sbjct: 74  DEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISK 114

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 3/114 (2%)

Query: 41  TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERL 100
            + I AP   V+   +  +  + Y   ++S  +    G  +      V+        E  
Sbjct: 6   ERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEE 65

Query: 101 EILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEG 154
           E  D+       R    E   + Y          +G  +   +T    + I  G
Sbjct: 66  EWDDENLRN---RFFSPEGDFDRYEGTWVFLPEGEGTRVVLTLTYELTIPIFGG 116

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 10/110 (9%), Positives = 22/110 (20%)

Query: 44  IDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEIL 103
           ++AP  +VW      +   +         +    G G    +                 +
Sbjct: 11  VNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSHRV 70

Query: 104 DDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPE 153
            D+                      +      G E+  +         P 
Sbjct: 71  PDKGSRTVRAHRVETGPFAYMNLHWTYRAVAGGTEMRWVQEFDMKPGAPF 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.95
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	99.91
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	99.88
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	99.88
d1fm4a_	159	Major tree pollen allergen {European white birch (	99.87
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	99.86
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	99.84
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.62
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.56
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.52
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.34
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.22
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	99.21
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	98.85
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	98.81
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	98.8
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.72
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.46
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.34
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	98.19
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.17
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	98.16
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	98.12
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.05
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	97.7
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	97.67
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	96.53
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	94.98
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	94.87
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	87.51

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.95  E-value=1.6e-26  Score=172.69  Aligned_cols=136  Identities=18%  Similarity=0.287  Sum_probs=119.1

Q ss_pred             ceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      |.+.+.+++|+||+|+||++++||++...|+|.+.+|+..|   .|++|.+++.+|.   .+.|||+++|+.+|+++|++
T Consensus         1 m~~~~~si~I~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~---~G~~R~~~~~~g~---~~~E~l~~~d~~~~~~~y~~   74 (138)
T d3cnwa1           1 MAHTTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTE---GGRVRHLANPDGD---TIIERLEVFNDKERYYTYSI   74 (138)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHCCTTCGGGTCTTCSEEEEEG---GGTEEEEECTTCC---EEEEEEEEEETTTTEEEEEE
T ss_pred             CCcEEEEEEEeCCHHHHHHHHhCccchHHHhcccceeEeec---CceeEEEEecCCc---eeEEEEEEEeCCCcEEEEEE
Confidence            45678899999999999999999999889999999998874   3899999998886   89999999999999999999


Q ss_pred             EeccccCCCeeeEEEEEEecCC-CceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697          115 VGGEHRLNNYRSVTSVNEFQKG-GEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM  180 (187)
Q Consensus       115 veg~~p~~~y~a~~~v~~~~~~-g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le  180 (187)
                      ++|++|+.+|.+++++.+.+++ ++.++|...+   + |.+..++.+..+++++|+.+|++|++.+.
T Consensus        75 ~~~~~p~~~~~~~~~l~p~~~g~~t~v~w~~~f---~-p~~~~~~~~~~~~~~~~~~~l~~L~~~f~  137 (138)
T d3cnwa1          75 MNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTF---T-PVEVSDEEAINLFHGIYSDGLKALQQAFL  137 (138)
T ss_dssp             EECSSSEEEEEEEEEEEECSSTTCEEEEEEEEE---E-ESSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcceeeEEEEEEEECCCCCeEEEEEEEEE---e-cCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999998643 3667776543   4 45677888899999999999999999874

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=99.91  E-value=5.2e-24  Score=162.05  Aligned_cols=112  Identities=21%  Similarity=0.314  Sum_probs=91.2

Q ss_pred             eEEEEEEEcCChHHHHH-HhhcCCC-CccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           37 VSLITQRIDAPAHVVWP-FVRRFDN-PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~-vi~df~~-~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      +...++.+++||+++|. ++.||++ ++.+++.|++|+++ |+|++|+||+|+|..|++...++|||+++|+++|+|+|+
T Consensus         4 ~~~~E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~~~~kErl~~iD~~~~~~~y~   83 (147)
T d1txca1           4 VFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLGYDYS   83 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEEEE
T ss_pred             EEEEEEeccCCHHHHHHhhhcccccCccccccccccceeecCCCCcceEEEEEEcCCCcceEEEEEEEEEccCCcEEEEE
Confidence            34567788999999996 5669999 57788889999998 999999999999999887778999999999999999999


Q ss_pred             EEeccccCCCeeeE---EEEEEecCCCceEEEEEEEEe
Q 046697          114 VVGGEHRLNNYRSV---TSVNEFQKGGEIYTIVTESYV  148 (187)
Q Consensus       114 vveg~~p~~~y~a~---~~v~~~~~~g~~~t~~~~~~~  148 (187)
                      ++||+.+...|.++   +.+.+..++|+.++|...|+.
T Consensus        84 iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~  121 (147)
T d1txca1          84 IVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHT  121 (147)
T ss_dssp             EEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEE
T ss_pred             EEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEE
Confidence            99998655555555   455554445676777766654

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=99.88  E-value=3.1e-22  Score=153.06  Aligned_cols=110  Identities=22%  Similarity=0.343  Sum_probs=88.5

Q ss_pred             eEEEEEEEcCChHHHHHHh-hcCCC--CccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           37 VSLITQRIDAPAHVVWPFV-RRFDN--PQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi-~df~~--~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      +...++.+++||+++|+++ .|+++  |+..|..|++|+++|+|++|+||.|+|..|++...++||++++|+++++++|+
T Consensus         4 t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sveveGdG~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~~~y~   83 (153)
T d2bk0a1           4 THVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEIKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYS   83 (153)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEEESSSSTTCEEEEECCTTSSCCEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEEEECCCCCCeEEEEEEecCccceeeEEEEEEEecCccEEEEE
Confidence            3456789999999999986 58776  77777799999988999999999999998888889999999999999999999


Q ss_pred             EEeccccCCCeeeEEEEE---EecCCCc--eEEEEEEE
Q 046697          114 VVGGEHRLNNYRSVTSVN---EFQKGGE--IYTIVTES  146 (187)
Q Consensus       114 vveg~~p~~~y~a~~~v~---~~~~~g~--~~t~~~~~  146 (187)
                      ++||+.....|.++...+   +.+++|+  +||+.|+.
T Consensus        84 viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~  121 (153)
T d2bk0a1          84 VIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHT  121 (153)
T ss_dssp             EEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             EEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEE
Confidence            999997566676655544   4443455  44444443

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=99.88  E-value=5.3e-22  Score=152.62  Aligned_cols=109  Identities=20%  Similarity=0.330  Sum_probs=90.5

Q ss_pred             EEEEEEEcCChHHHHHH-hhcCCC--CccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           38 SLITQRIDAPAHVVWPF-VRRFDN--PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        38 ~~v~~~I~apae~VW~v-i~df~~--~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ...++.+++||+++|++ ++|+++  |+.++..|++++++ |+|++||||.|+|..|++...++|||+++|+++|+++|+
T Consensus         5 ~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~KErie~iD~~~~~~~y~   84 (159)
T d1e09a_           5 YESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYT   84 (159)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCcEEEEEEEEEEcccccEEEEE
Confidence            44667889999999998 578887  67788889999998 999999999999999988889999999999999999999


Q ss_pred             EEeccccCCCeeeEEEEEEec---CCCceEEEEEEE
Q 046697          114 VVGGEHRLNNYRSVTSVNEFQ---KGGEIYTIVTES  146 (187)
Q Consensus       114 vveg~~p~~~y~a~~~v~~~~---~~g~~~t~~~~~  146 (187)
                      ++||+++...|.++...+.+.   ++|+.++|..++
T Consensus        85 viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eY  120 (159)
T d1e09a_          85 LIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY  120 (159)
T ss_dssp             ECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEE
T ss_pred             EEecccccccEEEEEEEEEEccCCCCCcEEEEEEEE
Confidence            999998667788777766653   245544554443

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=99.87  E-value=9.3e-22  Score=151.24  Aligned_cols=109  Identities=18%  Similarity=0.293  Sum_probs=87.7

Q ss_pred             EEEEEEEcCChHHHHHH-hhcCCC--CccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           38 SLITQRIDAPAHVVWPF-VRRFDN--PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        38 ~~v~~~I~apae~VW~v-i~df~~--~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ...++.+++||+++|++ ++|++.  |+.+|..|++|+++ |+|++|+||.|+|..|++.+.++|||+++|+++|+++|+
T Consensus         5 ~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~~~y~   84 (159)
T d1fm4a_           5 YETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYS   84 (159)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSSSEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCceEEEEEEEEEcccccEEEEE
Confidence            45567889999999997 568887  67788889999988 999999999999998888889999999999999999999


Q ss_pred             EEeccccCCCeee---EEEEEEecCCCceEEEEEEE
Q 046697          114 VVGGEHRLNNYRS---VTSVNEFQKGGEIYTIVTES  146 (187)
Q Consensus       114 vveg~~p~~~y~a---~~~v~~~~~~g~~~t~~~~~  146 (187)
                      ++||+.....|.+   ++++.+.+++|+.++|..++
T Consensus        85 viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eY  120 (159)
T d1fm4a_          85 VIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY  120 (159)
T ss_dssp             EEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEeccccccceEEEEEEEEEecCCCCceEEEEEEEE
Confidence            9999864555555   44555544455555555444

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.86  E-value=4e-22  Score=153.00  Aligned_cols=109  Identities=17%  Similarity=0.263  Sum_probs=88.1

Q ss_pred             EEEEEEEcCChHHHHHHh-hcCCC-CccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           38 SLITQRIDAPAHVVWPFV-RRFDN-PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi-~df~~-~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      ...++.+++||+++|+++ .|++. ++.+++.|++|+++ |+|++|+||.|+|..|++.+.++||++++|+++++++|++
T Consensus         5 ~~~E~~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~~~~Kerie~vD~e~~~~~y~v   84 (157)
T d1xdfa1           5 FEDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHKIEAVDEANLRYNYSI   84 (157)
T ss_dssp             EEEEEEESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEEEEE
T ss_pred             EEEEEeccCCHHHHHHHHhhchhhccccchhheecceeecCCCCCCcEEEEEEcCCCccEEEEEEEEEEechhcEEEEEE
Confidence            456778999999999875 68887 45689999999999 9999999999999999888899999999999999999999


Q ss_pred             EeccccCCCeeeEEEEEE---ecCCCceEEEEEEE
Q 046697          115 VGGEHRLNNYRSVTSVNE---FQKGGEIYTIVTES  146 (187)
Q Consensus       115 veg~~p~~~y~a~~~v~~---~~~~g~~~t~~~~~  146 (187)
                      +||+.....|.++...+.   .+++|+.++|..++
T Consensus        85 iEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eY  119 (157)
T d1xdfa1          85 VGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI  119 (157)
T ss_dssp             ESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEE
T ss_pred             EecccccccEEEEEEEEEEEcCCCCceEEEEEEEE
Confidence            999975566666555544   44355544444443

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.84  E-value=1.9e-20  Score=143.23  Aligned_cols=108  Identities=19%  Similarity=0.287  Sum_probs=86.4

Q ss_pred             EEEEEEEcCChHHHHHHh-hcCCC-CccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           38 SLITQRIDAPAHVVWPFV-RRFDN-PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi-~df~~-~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      ...++..++||+++|.++ .|+++ +..++|.|++++++ |+|++|+||.|+|..|++.+.++||++++|+++++++|++
T Consensus         5 ~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGdGg~GsIk~~~~~~~~~~~~~Kerie~iD~en~~~~y~v   84 (155)
T d1icxa_           5 FENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSI   84 (155)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTEEEEEE
T ss_pred             EEEeEEecCCHHHHhhhheeccchhchhhhhheeeeeEecCCCccceEEEEEeccCCceEEEEEEEEEEcccccEEEEEE
Confidence            345678899999999985 58888 35567889999999 9999999999999999888899999999999999999999


Q ss_pred             EeccccCCCeeeEEEEE---EecCCCceEEEEEE
Q 046697          115 VGGEHRLNNYRSVTSVN---EFQKGGEIYTIVTE  145 (187)
Q Consensus       115 veg~~p~~~y~a~~~v~---~~~~~g~~~t~~~~  145 (187)
                      +||++....|.++...+   +.+++|+..+|..+
T Consensus        85 iEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~e  118 (155)
T d1icxa_          85 IGGEGLDESLEKISYESKILPGPDGGSIGKINVK  118 (155)
T ss_dssp             EEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEE
T ss_pred             EecccccccEEEEEEEEEEecCCCCCeEEEEEEE
Confidence            99997555665555444   44445554444433

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.62  E-value=1.8e-14  Score=104.72  Aligned_cols=135  Identities=8%  Similarity=-0.016  Sum_probs=104.5

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG  117 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg  117 (187)
                      .+.++.|+||+|+||+++.|+.+...|.|.+.+++..|+.++|+..++++..+.   .+..++.++++ +++++|+... 
T Consensus         3 ~s~si~I~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~v~~~~p-~~~~~~~~~~-   77 (137)
T d2b79a1           3 FSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMP---ELAFTLVEVRE-NQCFSDLTAT-   77 (137)
T ss_dssp             EEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETTSC---CEEEEECCCBT-TTEEEEEEEE-
T ss_pred             eEEEEEEcCCHHHHHHHHhhhhhCccccCcccceeecccccceEEEEEEEcCCc---ceeeeeecccC-CcEEEEEecc-
Confidence            467889999999999999999997799999999998876568999989887765   57788888876 5789887633 


Q ss_pred             cccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          118 EHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       118 ~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                        |...+.....+.+.+++++.++|...+..  .........+...++..+...|++||+.+|.
T Consensus        78 --~~~~~~~~~~~~~~~~g~t~vt~~~~~~g--~~~~~~~~~~~~~v~~~~~~~l~~LK~~~Ea  137 (137)
T d2b79a1          78 --PFGNVLFEHEILENPDGTISLRHSVSLTD--SDTTEEALAFLKQIFADVPESVGKLKQILET  137 (137)
T ss_dssp             --TTEEEEEEEEEEECTTSCEEEEEEEEECS--CSCCTTHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred             --cceeeeeEEEEccCCCCcEEEEEEEeccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence              24566777777777655577887665422  2333445566777888899999999999984

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.56  E-value=1.3e-13  Score=101.83  Aligned_cols=143  Identities=10%  Similarity=0.037  Sum_probs=103.7

Q ss_pred             EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCC-CcceeeEEEEEEeCCCCeEEEEEEec
Q 046697           39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGL-PASTSTERLEILDDEKHILSFRVVGG  117 (187)
Q Consensus        39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~-~~~~v~ErL~~~D~~~~~~sY~vveg  117 (187)
                      .-+++|+||+++||+++.|+.+...|.|.+.++.+.+.++.|....+++..+. ......+....+++..+.+.|....+
T Consensus         6 e~si~I~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (155)
T d2rera1           6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSHRVPDKGSRTVRAHRVET   85 (155)
T ss_dssp             EEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCCTTSCCCEEEEEEEEEGGGTEEEEEESSC
T ss_pred             EEEEEECCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEeeeeeeEEEEEEEEEcCCccEEEEEeecC
Confidence            34679999999999999999997789999999998743223444444443221 11233344455777778888887655


Q ss_pred             cccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046697          118 EHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLH  184 (187)
Q Consensus       118 ~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~  184 (187)
                      ++ ...+.+...+.+.+ +|+.++|.+++ ...++.+.......+.++..+...|++||+.+|+.++
T Consensus        86 ~~-~~~~~~~w~~~~~~-~gT~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~~~  149 (155)
T d2rera1          86 GP-FAYMNLHWTYRAVA-GGTEMRWVQEF-DMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHR  149 (155)
T ss_dssp             TT-EEEEEEEEEEEEET-TEEEEEEEEEE-EECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc-ceeeEEEEEEeecC-CccEEEEEEEE-EECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            54 77888888888875 67778887764 3344556666667888899999999999999997654

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=3.5e-13  Score=98.76  Aligned_cols=142  Identities=16%  Similarity=0.117  Sum_probs=103.2

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG  117 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg  117 (187)
                      ...+++|+||+++||+++.|+.+...|.|.+.++++.+.++.+....+++...+.......++. +++.++.+.|++..|
T Consensus         3 v~~~~~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~g   81 (146)
T d2d4ra1           3 VRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEEE-WDDENLRNRFFSPEG   81 (146)
T ss_dssp             EEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-EETTTTEEEEEEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcceEEEEEEeeeeeEEEEEEEE-EcCCCCEEEEEEccC
Confidence            3467799999999999999999977999999999988332234444444443321123444443 677889999999998


Q ss_pred             cccCCCeeeEEEEEEecCCCceEEEEEEEEe-ecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697          118 EHRLNNYRSVTSVNEFQKGGEIYTIVTESYV-VDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASL  183 (187)
Q Consensus       118 ~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~-~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~  183 (187)
                      ++  ..+.++..+.+.+ +|+.++|...+-. ..++.......++..++..++..|+.|+++++.+.
T Consensus        82 ~~--~~~~g~w~l~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~s  145 (146)
T d2d4ra1          82 DF--DRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAAS  145 (146)
T ss_dssp             SC--SEEEEEEEEEECS-SSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             Cc--ceEEEEEEEEecC-CceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            64  6789999998875 6677777655321 11234566678888888899999999999988754

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.34  E-value=1.6e-11  Score=88.43  Aligned_cols=142  Identities=10%  Similarity=0.000  Sum_probs=90.1

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG  116 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve  116 (187)
                      +..-+++|+||+++||+++.|+.+...|.|.+++++...++ .+......................+++. ....+....
T Consensus         4 k~e~si~I~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   81 (147)
T d2ns9a1           4 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGS-FTIELRLSLGPLRGDARVRASFEDLEKP-SKATVKGSG   81 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTE-EEEEEEEESSSSEEEEEEEEEEEEEETT-TEEEEEEEE
T ss_pred             EEEEEEEEcCCHHHHHHHHhCHhhhhhcccchhheeecccc-cceeEEEEEEEEeeEeeeeeeeeeecCC-cceeEEEee
Confidence            45567899999999999999999988999999998765321 1222222221111011233444444443 444433333


Q ss_pred             -ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          117 -GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       117 -g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                       .......+..+..+.+.+ +|+.++|..+.....+-...........++..++..|++||++++.
T Consensus        82 ~~~~~~~~~~~~~~l~~~~-~gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~~  146 (147)
T d2ns9a1          82 RGAGSTLDFTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  146 (147)
T ss_dssp             ECSSEEEEEEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             eccccceeeEEEEEEEecC-CCcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             223355677777777764 5677777766433223344556678888899999999999998875

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.22  E-value=8.4e-11  Score=85.35  Aligned_cols=87  Identities=16%  Similarity=0.240  Sum_probs=59.2

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG  117 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg  117 (187)
                      ..+.+.|++||+++|.++.+...              |+            -+   +..+||++++|+++++++|++++|
T Consensus         7 l~~eveik~~a~kf~~~~~~~~~--------------~~------------~~---~~~KerVe~vD~en~sity~vieG   57 (120)
T d1vjha_           7 LSVKFDVKCPADKFFSAFVEDTN--------------RP------------FE---KNGKTEIEAVDLVKKTMTIQMSGS   57 (120)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHTT--------------SC------------SS---TTCEEEEEEEETTTTEEEEEEECT
T ss_pred             EEEEEEecCCHHHHHHHhhhccC--------------CC------------CC---cccEEEEEEEcCCCCEEEEEEEee
Confidence            45678999999999999953221              11            01   245999999999999999999999


Q ss_pred             cccCCCeeeE---EEEEEecC-CCc--eEEEEEEEEeecCCCC
Q 046697          118 EHRLNNYRSV---TSVNEFQK-GGE--IYTIVTESYVVDIPEG  154 (187)
Q Consensus       118 ~~p~~~y~a~---~~v~~~~~-~g~--~~t~~~~~~~~d~p~~  154 (187)
                      ++ +..|.++   ++++|.++ +|+  +||..|+....+.|++
T Consensus        58 dv-l~~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p   99 (120)
T d1vjha_          58 EI-QKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDP   99 (120)
T ss_dssp             TG-GGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCS
T ss_pred             cc-ccceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCH
Confidence            97 5666555   45555443 355  4555555544444444

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.21  E-value=2.8e-10  Score=83.36  Aligned_cols=131  Identities=15%  Similarity=0.062  Sum_probs=88.4

Q ss_pred             CCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEec-CCCcceeeEEEEEEeCCCCeEE
Q 046697           33 PNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVS-GLPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        33 ~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      |.+.+.+++++|++|+++||+++.||.++..|.+.+.+++..++   +.  .++... ++   .++-++++ |..++.+.
T Consensus         2 p~~~~~~~~i~I~~p~~~v~~~~~d~~~~p~w~~~l~~~~~~~~---~~--~~~~~~~~G---~~~~~i~~-~~p~~~i~   72 (133)
T d2qpva1           2 PVMQSRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADG---ED--WIAKGGPLG---EVRVNFAP-HNEFGVID   72 (133)
T ss_dssp             CCCCEEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEEET---TE--EEEECSSSC---EEEEEECC-CCSSCBCC
T ss_pred             CcceEEEEEEEECCCHHHHHHHHhChhhcchhhhccceeEEecC---Cc--EEEEecCCC---cEEEEEEE-cCCCCEEE
Confidence            55678889999999999999999999998799999998877633   22  333332 23   56667776 56689999


Q ss_pred             EEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          112 FRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       112 Y~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      |++..++. .. -...+.+.+.+ +|+.+++..     ..|++..++.+... ...++..|+.||+.+|.
T Consensus        73 w~~~~~~~-~~-g~v~fr~~~~g-~gt~v~~~~-----~~ppg~~~~~~~~~-~~~v~~dL~rlK~l~Ea  133 (133)
T d2qpva1          73 HVVTLPDG-LK-VYNALRVTPNG-SGTEVSFTL-----LRLEGMTDEDFEQD-ASAITADLEMLKSLLEA  133 (133)
T ss_dssp             EEEECTTS-CE-EEEEEEEEEET-TEEEEEEEE-----ECCTTCCHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_pred             EEEecCCC-CE-EEEEEEEccCC-CeEEEEEEE-----EeCCCCchHHHHHH-HHHHHHHHHHHHHHhcC
Confidence            99987754 11 12233433332 334343322     23556666665554 44668899999999984

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=98.85  E-value=2.1e-08  Score=72.48  Aligned_cols=141  Identities=10%  Similarity=-0.026  Sum_probs=84.2

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCC--CcceeeEEEEEEeCCCCeEEEEEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGL--PASTSTERLEILDDEKHILSFRVV  115 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~--~~~~v~ErL~~~D~~~~~~sY~vv  115 (187)
                      .+-+.+|++|+|+||+++.|+.....|.|.+++++..+++. . .-.+++.-|.  ..-..+.++...+.. ..+.....
T Consensus         3 ~s~~~~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~   79 (147)
T d2pcsa1           3 GNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDK-Y-KADLQIGIAAVKGKYDAIIEVTDIKPP-YHYKLLVN   79 (147)
T ss_dssp             EEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTE-E-EEEEEECCGGGCEEEEEEEEEEEEETT-TEEEEEEE
T ss_pred             CCceEEeCCCHHHHHHHHcCHHHHHhhCcchhhceecCCCE-E-EEEEEEeecceeeeeEEEEEEeccCcc-cceeEeec
Confidence            44567999999999999999999878999999998885531 1 1122232221  001244555666554 33333333


Q ss_pred             ecc-ccCCCeeeEEEEEEecCCCceEEEEEEEEeecCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          116 GGE-HRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIP-EGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       116 eg~-~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p-~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      ... .......+.....+..++++.++|...+ ....+ .......+...++.++++.++++++.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~-~~~g~l~~l~~~li~~~~~~~~~~f~~~~~~~l~~s  147 (147)
T d2pcsa1          80 GEGGPGFVNAEGVIDLTPINDECTQLTYTYSA-EVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKS  147 (147)
T ss_dssp             EEETTEEEEEEEEEEEEESSSSEEEEEEEEEE-EEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccchhcceeEEeeecccCCcEEEEEEEEE-EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            221 2123344444444444455777777664 23322 223445667777788888888888888763

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=98.81  E-value=8e-08  Score=71.27  Aligned_cols=146  Identities=8%  Similarity=-0.061  Sum_probs=79.9

Q ss_pred             CCCceeEEEEEEEcCChHHHHHHhhcCCCCcccc-ccceeeEec-CCCCCCeEEEEEEec-CCCcceeeEEEEEEeCCCC
Q 046697           32 KPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HFIKSCNMH-GDGGVGSIREVTVVS-GLPASTSTERLEILDDEKH  108 (187)
Q Consensus        32 ~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~v~s~~~~-G~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~~  108 (187)
                      .+.+....++.+|+||+++||+++.|...+..|. |.--.+... .+..+|....+.+.. ++..-.+.-++.++++. +
T Consensus         8 ~~~~~~i~i~r~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~~~~~g~v~~i~~~-~   86 (163)
T d1xuva_           8 EPGKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEP-E   86 (163)
T ss_dssp             CTTCSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETT-T
T ss_pred             CCCCceEEEEEEeCCCHHHHHHHHcChHHhhhccCCCCccceeeeeeceeCceEEEEEEecCCCceEEEEEEEEecCC-C
Confidence            3455567788999999999999999988855554 332223332 343344444444443 22223467788999874 8


Q ss_pred             eEEEEEEecccc--CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          109 ILSFRVVGGEHR--LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       109 ~~sY~vveg~~p--~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      +++|+.--+..+  ......++.+.+.+++++.+++...   +..+. ..+......+..=....|++|++++|++
T Consensus        87 rl~~tw~~~~~~~~~~~~~v~~~~e~~~~g~t~~~~~~~---~~~~~-~~~~~~~~g~~~GW~~~L~~L~~~le~~  158 (163)
T d1xuva_          87 RIISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSV---FQTIE-DRDGMLQSGMEEGINDSYERLDELLEKM  158 (163)
T ss_dssp             EEEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEE---CSSHH-HHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeccCCCCCCCcEEEEEEEEEeCCCcEEEEEEEc---CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888876433322  2334445555555422233443322   22111 1111111122333556788888888875

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=98.80  E-value=1.9e-07  Score=68.31  Aligned_cols=138  Identities=11%  Similarity=0.057  Sum_probs=87.0

Q ss_pred             eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec--CCCCCCeEEEEEEecC--CCcceeeEEEEEEeCCCCeEEE
Q 046697           37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH--GDGGVGSIREVTVVSG--LPASTSTERLEILDDEKHILSF  112 (187)
Q Consensus        37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~--G~g~vG~vR~lt~~~g--~~~~~v~ErL~~~D~~~~~~sY  112 (187)
                      +..++.+|++|+++||++|.|+..-+.|.|.+.++++.  +++..+......+..|  +.......+ ...+..+..+..
T Consensus         3 ~~~~~~vi~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   81 (148)
T d1t17a_           3 RHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATR-VRRDKDARSIDV   81 (148)
T ss_dssp             EEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEE-EEEETTTCEEEE
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEEeeeeEEEEEEE-eeecCCceEEEE
Confidence            34578899999999999999999966899999999876  3322344444444433  211233333 335566666666


Q ss_pred             EEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          113 RVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       113 ~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      ...+|+  ++...+...+.+.+ +|++++|...   ++.+.++....+..+++.+.+.-+++++++.++
T Consensus        82 ~~~~g~--f~~l~~~W~f~~~~-~~T~V~~~l~---fe~~~~l~~~~~~~~~~~~~~~~i~aF~~Ra~~  144 (148)
T d1t17a_          82 SLLYGP--FKRLNNGWRFMPEG-DATRVEFVIE---FAFKSALLDAMLAANVDRAAGKLIACFEARAQQ  144 (148)
T ss_dssp             EESSTT--SSCEEEEEEEEEET-TEEEEEEEEE---ECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCch--hhhcccceeeccCC-CceEEEEEEE---EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665553  57888888888875 5677777554   344444444444455555555555555555544

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.72  E-value=7.5e-07  Score=65.94  Aligned_cols=150  Identities=13%  Similarity=-0.004  Sum_probs=82.2

Q ss_pred             CCceeEEEEEEEcCChHHHHHHhhcCCCCccc-cccceeeEec-CCCCCCeEEEEEEec-CCCcceeeEEEEEEeCCCCe
Q 046697           33 PNTCVSLITQRIDAPAHVVWPFVRRFDNPQKY-KHFIKSCNMH-GDGGVGSIREVTVVS-GLPASTSTERLEILDDEKHI  109 (187)
Q Consensus        33 ~~~~~~~v~~~I~apae~VW~vi~df~~~~~w-~p~v~s~~~~-G~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~~~  109 (187)
                      ++.....++..|+||+++||+++.|...+..| .|.--.+... ++-.+|..-++.+.. ++....+.-++.++++ +++
T Consensus         4 ~~~~~i~ier~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p-~~~   82 (164)
T d2il5a1           4 NEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVM-DEY   82 (164)
T ss_dssp             CEEEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEET-TTE
T ss_pred             CCcEEEEEEEEECCCHHHHHHHHcCHHHHhCcccCCCccceEEEeecccCceEEEEEecCCcceEEEEEEEEEEcC-CCE
Confidence            44556778899999999999999998885555 4431122222 332344443344443 2211245668889987 588


Q ss_pred             EEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHH----HHHHHHH---HHHHHHHHHHHHHhhc
Q 046697          110 LSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVED----TKMFVDT---VVKLNLQKLGVVSMAS  182 (187)
Q Consensus       110 ~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~----~~~~~~~---~~~~gL~~Lk~~le~~  182 (187)
                      ++|+.--...+......++.+....++|+.+++....+.... .......    .+...++   =+...|+.||+.||..
T Consensus        83 i~~t~~~~~~~~~~~~~~~~~~e~~~ggT~vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~lE~g  161 (164)
T d2il5a1          83 VKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKE-RRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETS  161 (164)
T ss_dssp             EEEEESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECCC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEeccCCCCCceEEEEEEEEcCCCCEEEEEEEeecChhH-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888763211212223333444444446688888766543321 1222211    1122222   2345688899998876


Q ss_pred             cc
Q 046697          183 LH  184 (187)
Q Consensus       183 ~~  184 (187)
                      ..
T Consensus       162 ~~  163 (164)
T d2il5a1         162 TQ  163 (164)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.46  E-value=1.9e-06  Score=63.69  Aligned_cols=142  Identities=12%  Similarity=0.073  Sum_probs=76.5

Q ss_pred             ceeEEEEEEEcCChHHHHHHhhcCCCCcccc-cc-ceeeEecCCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCCCeE
Q 046697           35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYK-HF-IKSCNMHGDGGVGSIREVTVV--SGLPASTSTERLEILDDEKHIL  110 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~-p~-v~s~~~~G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~~~~  110 (187)
                      +....++.+|+||+++||+++.|...+..|. |. .......++-.+|..-.+.+.  +|. .....=++.++++ .+++
T Consensus         4 ~~~l~i~r~i~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~-~~~~~g~v~ei~p-~~rl   81 (165)
T d1xfsa_           4 ELDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGN-KFPNSGCFLEVTD-EKRL   81 (165)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCC-EEEEEEEEEEEET-TTEE
T ss_pred             CcEEEEEEEEcCCHHHHHHHHcCHHHHhhcCCCCCccceeecccceeCceEEEEEECCCCc-eeeEEEEEEEecC-CcEE
Confidence            3456788999999999999999988865663 32 222222234223433334443  333 2245568888987 4888


Q ss_pred             EEEE--Eecc----------cc--CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046697          111 SFRV--VGGE----------HR--LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG  176 (187)
Q Consensus       111 sY~v--veg~----------~p--~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk  176 (187)
                      .|+.  .++.          .+  ......++.+.+. ++|+++++....   ..+. ......+..+..=....|+.|+
T Consensus        82 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~gT~lt~~~~~---~~~~-~~~~~~~~g~~~GW~~~l~~L~  156 (165)
T d1xfsa_          82 IWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPT-SSGTRYTACAMH---NTPG-QRKLHEEMGFHEGWGTTITQLE  156 (165)
T ss_dssp             EEESSEEGGGEECCC-----------CCEEEEEEEEC-SSSEEEEEEEEC---SSHH-HHHHHHTTTHHHHHHHHHHHHH
T ss_pred             EEEEeecccccccccccccccCCCCccEEEEEEEEEc-CCcEEEEEEEEc---CCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            8763  2211          10  1112333444443 366777765432   1111 1111111112333567899999


Q ss_pred             HHHhhcc
Q 046697          177 VVSMASL  183 (187)
Q Consensus       177 ~~le~~~  183 (187)
                      +.||+..
T Consensus       157 ~~le~~~  163 (165)
T d1xfsa_         157 ELLKQEK  163 (165)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9998764

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.34  E-value=2.5e-05  Score=55.88  Aligned_cols=134  Identities=15%  Similarity=0.126  Sum_probs=75.2

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCcccc-ccceeeEe-cCCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCCCeEEEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYK-HFIKSCNM-HGDGGVGSIREVTVV--SGLPASTSTERLEILDDEKHILSFR  113 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~-p~v~s~~~-~G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~~~~sY~  113 (187)
                      ..++..|+||+++||+++.|...+..|. |.--.+.. .++-.+|..-++++.  +++..-.+.=++.++++ .+++.|+
T Consensus         4 i~~~r~i~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~~~~~g~v~~~~p-~~~i~~t   82 (143)
T d1z94a1           4 IRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVP-GERIRYT   82 (143)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEET-TTEEEEE
T ss_pred             EEEEEEECCCHHHHHHHhcCHHHHhhhhCCCCccceeEeeccccceeEEEEEeeCCCCcEEEEEEEEEEecC-CeEEEEE
Confidence            3466799999999999999988865553 32222222 244334443334443  23322245668888987 5778887


Q ss_pred             EEeccccC-CCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697          114 VVGGEHRL-NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA  181 (187)
Q Consensus       114 vveg~~p~-~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~  181 (187)
                      ..-.+... .....++.+.+.+ +|+.+++...    ..+.....+.    +..=....|+.|++.+|+
T Consensus        83 ~~~~~~~~~~~~~v~~~l~~~~-~gT~lt~~~~----~~~~~~~~~~----~~~GW~~~l~~L~~~lE~  142 (143)
T d1z94a1          83 DRFDDAGLPGDMITTITLAPLS-CGADLSIVQE----GIPDAIPPEN----CYLGWQQSLKQLAALVEP  142 (143)
T ss_dssp             EEESCCC---CEEEEEEEEEET-TEEEEEEEEE----CCCTTSCHHH----HHHHHHHHHHHHHHHHSC
T ss_pred             EeccCCCCCCcEEEEEEEEEcC-CCEEEEEEEE----cCCChhHHHH----HHHHHHHHHHHHHHHHcC
Confidence            65333211 2233344444553 5677776543    2233222222    223355679999999885

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=98.19  E-value=6.4e-06  Score=60.12  Aligned_cols=136  Identities=8%  Similarity=-0.101  Sum_probs=74.1

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCcccccc-----ceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEE
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHF-----IKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~-----v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      ...+++|+||+++||+++.+. -.+.|+|.     +..+.+. +.|  |..+ +...+|..  .+.=++.++++ .+++.
T Consensus         6 v~~~~~i~Ap~e~Vf~a~te~-~~~Ww~~~~~~~~~~~~~~~~~~g--G~~~-~~~~dG~~--~~~g~v~ei~p-~~rl~   78 (155)
T d1zxfa1           6 VRHSVTVKADRKTAFKTFLEG-FPEWWPNNFRTTKVGAPLGVDKKG--GRWY-EIDEQGEE--HTFGLIRKVDE-PDTLV   78 (155)
T ss_dssp             EEEEEEESSHHHHHHHHHTTC-SSSSSSGGGSTTTTCSSCEEETTT--TEEE-CCCTTTSC--CCCEEEEEEET-TTEEE
T ss_pred             EEEEEEEeCCHHHHHHHHHhh-hHhhcCCCCCCceEEEEEEeeCCC--ceEE-EEccccce--eeeEEEEEEec-CcEEE
Confidence            446789999999999999862 23445554     2333333 322  4432 33334432  33447888987 48888


Q ss_pred             EEEEeccc--cCC--CeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHhhccc
Q 046697          112 FRVVGGEH--RLN--NYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVD---TVVKLNLQKLGVVSMASLH  184 (187)
Q Consensus       112 Y~vveg~~--p~~--~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~---~~~~~gL~~Lk~~le~~~~  184 (187)
                      |+---++.  +..  ...-++.+.+.+++++.+++...  .+. .  ..........+   .=....|+.|++.+|+.+.
T Consensus        79 ~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~h~--g~~-~--~~~~~~~~~~~~~~~GW~~~L~~L~~~le~~~~  153 (155)
T d1zxfa1          79 IGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHT--HFD-R--MGTKHAKRVRNGMDKGWPTILQSFQDKIDEEGA  153 (155)
T ss_dssp             EECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEEC--SST-T--SCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHT
T ss_pred             EEEecCCccccccccceEEEEEEEecCCCCEEEEEEEe--ccC-c--ccchhHHHHHhhhhhhHHHHHHHHHHHhhhhcc
Confidence            88533221  112  22334444455444566775532  111 1  11222222222   2245779999999999876


Q ss_pred             C
Q 046697          185 G  185 (187)
Q Consensus       185 ~  185 (187)
                      +
T Consensus       154 ~  154 (155)
T d1zxfa1         154 K  154 (155)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.17  E-value=1.3e-05  Score=57.36  Aligned_cols=92  Identities=20%  Similarity=0.216  Sum_probs=58.7

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG  117 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg  117 (187)
                      ..+++.|+||+++||+++.+...+..|.+..   ...  .++|..  +.+..+..  .+.=++.++++ +++++|+.-.+
T Consensus         7 i~~~~~i~ap~e~Vw~alt~p~~~~~W~~~~---~~~--~~~g~~--~~~~~~~~--~~~g~v~~~~~-~~~l~~~~~~~   76 (138)
T d1xn5a_           7 IKKEVRFNAPIEKVWEAVSTSEGLAFWFMEN---DLK--AETGHH--FHLQSPFG--PSPCQVTDVER-PIKLSFTWDTD   76 (138)
T ss_dssp             EEEEEEESSCHHHHHHHTTSHHHHHTTSCCB---CCC--SCTTCE--EEEECSSC--EEEEEEEEEET-TTEEEEEETTT
T ss_pred             EEEEEEECCCHHHHHHHHcCHHHhceEccCC---ccc--ccceee--EEecCCcc--ceeEEEEEEeC-CcEEEEEecCC
Confidence            5577899999999999999999876776532   121  123443  33332211  45667888987 58899986322


Q ss_pred             cccCCCeeeEEEEEEecCCCceEEEEEE
Q 046697          118 EHRLNNYRSVTSVNEFQKGGEIYTIVTE  145 (187)
Q Consensus       118 ~~p~~~y~a~~~v~~~~~~g~~~t~~~~  145 (187)
                           +...++.+.+.+ +|+.+++...
T Consensus        77 -----~~~v~~~l~~~~-~gT~lt~~~~   98 (138)
T d1xn5a_          77 -----GWSVTFHLKEEE-NGTIFTIVHS   98 (138)
T ss_dssp             -----TEEEEEEEEECS-SSEEEEEEEE
T ss_pred             -----CeEEEEEEEEcC-CcEEEEEEEe
Confidence                 344455555553 6787887654

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=98.16  E-value=3.4e-05  Score=55.81  Aligned_cols=131  Identities=15%  Similarity=0.065  Sum_probs=74.1

Q ss_pred             CCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEec-CCCcceeeEEEEEEeCCCCeEE
Q 046697           33 PNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVS-GLPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        33 ~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      ..+-....++.|+||+++||+++.|...+..|.+.   +.+.  -.+|..  +++.. ++   .+.=++.++++ +++++
T Consensus         5 ~~~~~i~~~~~i~ap~e~Vw~alTdp~~l~~W~~~---~~~~--~~~G~~--~~~~~~~g---~~~g~v~~~~p-~~~l~   73 (143)
T d1xn6a_           5 NTLNDIKQTIVFNASIQKVWSVVSTAEGIASWFMP---NDFV--LEVGHE--FHVQSPFG---PSPCKVLEIDE-PNHLS   73 (143)
T ss_dssp             CSCCCEEEEEEESSCHHHHHHTTSCSHHHHTTSCC---BCCC--CCTTCE--ECBCCTTC---CCCEEEEEEET-TTEEE
T ss_pred             CCCCeEEEEEEECCCHHHHHHHhcChHHhceEeec---cCcc--cccCce--EEEecccc---ceeEEEEEEeC-CcEEE
Confidence            33444667889999999999999999997778643   2232  112332  33432 22   34567888987 58899


Q ss_pred             EEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCC------CCCHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 046697          112 FRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPE------GNTVEDTKMFVDTVVKLNL-QKLGVVSMA  181 (187)
Q Consensus       112 Y~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~------~~~~~~~~~~~~~~~~~gL-~~Lk~~le~  181 (187)
                      |+--.     ....-++.+.+.+++++.+++...  .+....      ..........+.+=....| +.||+.+|.
T Consensus        74 ~tw~~-----~~~~v~~~l~~~~~G~T~l~l~h~--g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~lEG  143 (143)
T d1xn6a_          74 FSWDT-----DGWVVSFDLKDLGDNKTEFTLIHG--GWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVEG  143 (143)
T ss_dssp             EEETT-----TTEEEEEEEEEEETTEEEEEEEEE--CCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHHC
T ss_pred             EEEcC-----CCcEEEEEEEEcCCCcEEEEEEEe--CCCCchhhhhhcchhhHHHHHHHhhCHHHHHHHHHHHHhCC
Confidence            98622     123445555565534466775433  222111      1122233333333333445 689998873

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.12  E-value=5.7e-05  Score=56.15  Aligned_cols=128  Identities=13%  Similarity=0.102  Sum_probs=79.5

Q ss_pred             CCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEE
Q 046697           32 KPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILS  111 (187)
Q Consensus        32 ~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~s  111 (187)
                      ..+...-.++..|+||+++||+++.+...++.|.+......+. .|  |.++ +.+.++    ...-++.++++ ++++.
T Consensus         8 ~~~~~~f~~er~i~ap~e~Vw~AlTdpe~l~~W~~~~~~~d~~-~G--G~~~-~~~~~~----~~~~~v~~~ep-p~rL~   78 (160)
T d2nn5a1           8 ENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGELG-VN--GFWR-FILPDF----EETMPFTDYAE-EKYLG   78 (160)
T ss_dssp             ETTEEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEECS-TT--CEEE-EEETTE----EEEEEEEEEET-TTEEE
T ss_pred             cCCcEEEEEEEEecCCHHHHHHHHcCHHHHHhhCCCCCccccc-CC--CeeE-EEcCCC----CcceEEEEEec-CCEEE
Confidence            4567777889999999999999999999987888765443332 12  5553 555544    35567888986 69999


Q ss_pred             EEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          112 FRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       112 Y~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      |+--++       .-++.+.+.+++++.++....     .++...+... .. .+=...+|+.|++.+|..
T Consensus        79 ~tW~~~-------~v~~eL~~~~~~~t~l~l~~~-----~~~~~~~~~~-~~-~~GW~~~Ld~L~~~leg~  135 (160)
T d2nn5a1          79 VTWDTG-------IIYFDLKEQAPHQTLLVFSES-----LPENFTTPRH-KD-IAGWSIVLNRLKQVVETP  135 (160)
T ss_dssp             EEETTE-------EEEEEEEEEETTEEEEEEEEE-----ECTTCSSCHH-HH-HHHHHHHHHHHHHHHHCT
T ss_pred             EEecCc-------eEEEEEecCCCCeEEEEEEEe-----cCccccchhh-hh-HHHHHHHHHHHHHHHcCC
Confidence            986221       224445555434455554332     1222211111 11 123578899999999863

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.05  E-value=4.8e-05  Score=54.28  Aligned_cols=128  Identities=7%  Similarity=0.018  Sum_probs=67.4

Q ss_pred             EEEEEEEcCChHHHHHHhhcCCCCccccc-c-----ceeeEecCCCCCCeEEEEEEec--CCCcceeeEEEEEEeCCCCe
Q 046697           38 SLITQRIDAPAHVVWPFVRRFDNPQKYKH-F-----IKSCNMHGDGGVGSIREVTVVS--GLPASTSTERLEILDDEKHI  109 (187)
Q Consensus        38 ~~v~~~I~apae~VW~vi~df~~~~~w~p-~-----v~s~~~~G~g~vG~vR~lt~~~--g~~~~~v~ErL~~~D~~~~~  109 (187)
                      ..++..|+||+++||+++.|...+..|.+ .     +..+.+.  -.+|.--.+.+..  |. ...+.=++.++++. ++
T Consensus         3 l~i~r~i~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~g~-~~~~~g~v~~~~p~-~r   78 (143)
T d3elia1           3 LRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLD--FTRLGPWFSVMVNGEGQ-RYKVSGQVTHVKPP-QS   78 (143)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCC--CSSSEEEEEEEECTTCC-EEEEEEEEEEEETT-TE
T ss_pred             EEEEEEECCCHHHHHHHhcCHHHHhhhcCCCCceeeeeeEEEe--eccCccEEEEEECCCCc-EEEEEEEEEEcCCC-CE
Confidence            45788999999999999999888655542 2     1122222  1123333333433  32 12355688889875 67


Q ss_pred             EEEEE--EeccccCCCeeeEEEE--EEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          110 LSFRV--VGGEHRLNNYRSVTSV--NEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       110 ~sY~v--veg~~p~~~y~a~~~v--~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      ++|+-  .+.+. .....+.+.+  .+. ++|+++++....    .+.   . ........=....|+.|++.|
T Consensus        79 l~~t~~~~~~~~-~~~~~~~vt~~l~~~-~~gT~l~~~~~~----~~~---~-~~~~~~~~GW~~~L~~L~~~l  142 (143)
T d3elia1          79 VGFTWGWHDDDD-RRGAESHVMFIVEPC-AKGARLILDHRE----LGD---D-EMSLRHEEGWTSSLRKLAAEL  142 (143)
T ss_dssp             EEEEEEEECTTS-CEEEEEEEEEECCBC---CEEEEEEEES----CSC---H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCC-CCCCcEEEEEEEEEc-CCCEEEEEEEEc----CCC---H-HHHHHHHHHHHHHHHHHHHHh
Confidence            76653  43322 2223333332  222 256777765431    121   2 223333334466677887765

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=97.70  E-value=0.00017  Score=54.04  Aligned_cols=139  Identities=9%  Similarity=0.052  Sum_probs=79.1

Q ss_pred             CCCCCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCC--------------Ccc
Q 046697           29 FEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGL--------------PAS   94 (187)
Q Consensus        29 ~~~~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~--------------~~~   94 (187)
                      ++.+.+.....++..|+||+++||+++.|...+..|.+.. .++..    +|..-.+.+.++.              ..-
T Consensus        12 ~g~~~d~~~l~~er~~~Ap~e~VW~AlTdpe~l~~W~~p~-~~d~~----~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
T d2k5ga1          12 HGARLDAQSIRFERLLPGPIERVWAWLADADKRARWLAGG-ELPRQ----PGQTFELHFNHAALTAETAPARYAQYDRPI   86 (183)
T ss_dssp             CCCCSCCSSEEEEEEESSSSHHHHHHHHCHHHHTTTSCCC-CCCSS----TTCEEEEEECGGGSCCSSCCSSCSGGGSCE
T ss_pred             cccccccceEEEEEEeCCCHHHHHHHHhChHHHhhhcCCC-Ccccc----CCCEEEEEecCCCCcccccccccccCCCce
Confidence            4555555667788999999999999999988866665321 22221    2333234443211              001


Q ss_pred             eeeEEEEEEeCCCCeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHH
Q 046697           95 TSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQK  174 (187)
Q Consensus        95 ~v~ErL~~~D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~  174 (187)
                      .+.=++.++++ .++++|+...+... ..-.-++.+.+. ++|+.+++...-    .++   .+....+ ..=....|+.
T Consensus        87 ~~~g~v~~~~p-~~rl~~tw~~~~~~-~~s~v~~~l~~~-g~gT~ltl~~~~----~~~---~~~~~~~-~~GW~~~L~~  155 (183)
T d2k5ga1          87 VARHTLLRCEP-PRVLALTWGGGAGE-APSEVLFELSEA-GEQVRLVLTHTR----LAD---RAAMLDV-AGGWHAHLAV  155 (183)
T ss_dssp             EEEEEEEEEET-TTEEEEECCCCSSS-SCCEEEEEEEEC-SSSEEEEEEEEC----CCS---HHHHHHH-TTTTTTHHHH
T ss_pred             eEEEEEEEEeC-CeEEEEEeccCCCC-CcEEEEEEEEEc-CCcEEEEEEEec----CCC---hhhHHHH-hhhHHHHHHH
Confidence            35568899987 68899987655431 111223333343 356777755431    111   2222222 2223467999


Q ss_pred             HHHHHhhcc
Q 046697          175 LGVVSMASL  183 (187)
Q Consensus       175 Lk~~le~~~  183 (187)
                      |++.|+...
T Consensus       156 L~~~leg~~  164 (183)
T d2k5ga1         156 LAGKLAGQA  164 (183)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHCCCC
Confidence            999998654

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00017  Score=51.47  Aligned_cols=124  Identities=10%  Similarity=0.132  Sum_probs=69.3

Q ss_pred             ceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697           35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV  114 (187)
Q Consensus        35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v  114 (187)
                      .+...++.+++||+++||+++.|-..++.|...-...+.. .|  |.   +++-+|    .+.=++.++++. +++.|+-
T Consensus         3 T~~i~~~r~~~ap~e~Vw~a~tdpe~l~~W~~~~~~~d~~-~G--g~---f~~~~g----~~~G~~~ev~p~-~rlv~tw   71 (132)
T d1x53a1           3 TCKITLKETFLTSPEELYRVFTTQELVQAFTHAPATLEAD-RG--GK---FHMVDG----NVSGEFTDLVPE-KHIVMKW   71 (132)
T ss_dssp             EEEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCBCCCS-TT--CC---CBBTTT----TEECCEEEEETT-TEEEEEE
T ss_pred             ceEEEEEEEECCCHHHHHHHHcCHHHHHhhhCCccccccc-cC--CE---EEEEec----ceeEEEEEEeCC-CEEEEEE
Confidence            4667889999999999999999988877886443333332 12  33   223333    234456778764 5666553


Q ss_pred             EeccccCCCeeeEEEE--EEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          115 VGGEHRLNNYRSVTSV--NEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       115 veg~~p~~~y~a~~~v--~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      --.+.|...+ +.+.+  .+. ++++++++...-.    |    .......-++.=+.-|+.||+.+
T Consensus        72 ~~~~~~~~~~-s~vt~~l~~~-~~~T~l~l~~~g~----p----~~~~e~~~~GW~~~~~~~lk~~f  128 (132)
T d1x53a1          72 RFKSWPEGHF-ATITLTFIDK-NGETELCMEGRGI----P----APEEERTRQGWQRYYFEGIKQTF  128 (132)
T ss_dssp             EETTSCTTCC-EEEEEECCBC-SSCEEEEEEEEEE----E----HHHHHHHHHTTHHHHHHHHHHHT
T ss_pred             ecCCCCCCCc-EEEEEEEEEC-CCcEEEEEEEECC----C----cchHHHHHhhHHHHHHHHHHHHc
Confidence            2222222222 33333  232 3567777665422    2    12223333343344688888876

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.53  E-value=0.023  Score=41.31  Aligned_cols=125  Identities=10%  Similarity=0.069  Sum_probs=73.8

Q ss_pred             ChHHHHHHhh-cCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccccCCCee
Q 046697           47 PAHVVWPFVR-RFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYR  125 (187)
Q Consensus        47 pae~VW~vi~-df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p~~~y~  125 (187)
                      ..+++|.-+- .-..|..+.|.+.+|++..+++-+-.|.++|+++    .++|++.-. + ..++.|.+....-  ....
T Consensus        21 Tr~QlW~GL~lrar~p~~Fv~~l~~c~v~~~~~~~~~Rel~fg~~----~v~e~Vtl~-~-~~~v~f~~~a~~~--~~g~   92 (151)
T d2ffsa1          21 DRLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLHRRLYLPGL----VVEDEVVLK-A-PDSAHYSIKPSAE--VAGG   92 (151)
T ss_dssp             CHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSSEEEEEEEETTE----EEEEEEEEE-T-TTEEEEEECCCSS--SBEE
T ss_pred             CHHHHHHHHHHhhcCHhhcccccceEEEEEecCCeEEEEEEECCc----eeEEEEEEc-C-CcEEEEEcccccC--CCCc
Confidence            3579999865 4555888889999999984333478999999765    799998754 3 4788998775322  1123


Q ss_pred             eEEEEEEecCCCc-eEEEEEEEEeecCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 046697          126 SVTSVNEFQKGGE-IYTIVTESYVVDIPEGNTVEDTKMFVDTVVK-LNLQKLGVVSMA  181 (187)
Q Consensus       126 a~~~v~~~~~~g~-~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~-~gL~~Lk~~le~  181 (187)
                      +...++..+.+|. -+++.|+....+  ..........++++.|. +-++.|+..-|+
T Consensus        93 ~l~~~Ieep~~g~L~lrf~Ye~~~p~--~~~~~~~~~e~~ksaY~~ad~dTvr~IRe~  148 (151)
T d2ffsa1          93 SLDMTIEEPEPGSLFVRFAYCTRYLQ--PLGDELPYDAFVKQAYIAMDVETIATIRDR  148 (151)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECSC--C--CCCCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEccCCCCeEEEEEEEEcCCCC--CCcchhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3333334433443 356666532221  11111223455666654 445566665554

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.43  Score=34.91  Aligned_cols=142  Identities=8%  Similarity=-0.074  Sum_probs=78.7

Q ss_pred             EEEEEcCChHHHHH-HhhcCCCCccccccceeeEecCC-CCCCeEEEEEEec-CC-Cc---ceeeEEEEEEeCCCCeEEE
Q 046697           40 ITQRIDAPAHVVWP-FVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVS-GL-PA---STSTERLEILDDEKHILSF  112 (187)
Q Consensus        40 v~~~I~apae~VW~-vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~-g~-~~---~~v~ErL~~~D~~~~~~sY  112 (187)
                      .+.+|++|++++.. ++.|....+.|-+.+..++++-. +.-..+-...+.. .. +.   ..+.-|-...++....+..
T Consensus        56 ~~~~i~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~~~~~~~  135 (214)
T d1em2a_          56 LKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSG  135 (214)
T ss_dssp             EEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcCCCceEEEEEecccCCCCCCCcEEEEEEEEEEcCCcEEEEE
Confidence            46789999999986 66788777799999999988621 1112222222221 21 11   2334444444444433333


Q ss_pred             EEEecc--ccCC------CeeeEEEEEEecC--CCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697          113 RVVGGE--HRLN------NYRSVTSVNEFQK--GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS  182 (187)
Q Consensus       113 ~vveg~--~p~~------~y~a~~~v~~~~~--~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~  182 (187)
                      .-++.+  ++..      .+.+...+.+.+.  +.+.++++   ...|+.--........++....-..+..|++.+.++
T Consensus       136 ~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~---~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lrk~~~k~  212 (214)
T d1em2a_         136 IATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWI---LNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISEL  212 (214)
T ss_dssp             EECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEE---ECEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEE---EEeCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            333322  2222      3345555556543  23555544   344643334455555566666667799999998886


Q ss_pred             cc
Q 046697          183 LH  184 (187)
Q Consensus       183 ~~  184 (187)
                      .+
T Consensus       213 ~a  214 (214)
T d1em2a_         213 GA  214 (214)
T ss_dssp             TC
T ss_pred             cC
Confidence            53

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.87  E-value=0.44  Score=34.47  Aligned_cols=139  Identities=9%  Similarity=-0.089  Sum_probs=71.7

Q ss_pred             EEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEec-CCC-c--ceee-EEEEEEeCCCCeEEEE
Q 046697           40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVS-GLP-A--STST-ERLEILDDEKHILSFR  113 (187)
Q Consensus        40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~-g~~-~--~~v~-ErL~~~D~~~~~~sY~  113 (187)
                      .+.+|++|+++|++++.|......|-+.+..+++. -.+.-..+-...+.. ..+ .  ..+. -|...-++....+...
T Consensus        48 ~~~~i~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~~~~~~~~  127 (199)
T d1jssa_          48 AQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGV  127 (199)
T ss_dssp             EEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEeCCCHHHHHHHHhChhhhhhcccchheEEEEEEcCCCcEEEEEEEcccCCCCcCCcEEEEEEEEEEcCCcEEEEEE
Confidence            45788999999999999999988999999999887 322223332222321 111 1  1111 2222222222222222


Q ss_pred             EEeccccC------CCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          114 VVGGEHRL------NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       114 vveg~~p~------~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                      ..+..++.      ..+.+...+.|.++ +...|.+.+....|+......-....++....-.-+.+|++.+
T Consensus       128 ~~~~~p~~~~~VR~~~~~~~~~i~p~~~-~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~l  198 (199)
T d1jssa_         128 SVEWSETRPEFVRGYNHPCGWFCVPLKD-SPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGL  198 (199)
T ss_dssp             ECCCCCCCTTSEECEECSEEEEEEEETT-EEEEEEEEEEECEECCSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCCCCCceEEEEEeeeeEEEEEcCC-CCCcEEEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22222222      23445566667643 2112333333455654444444444555555555667776654

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.51  E-value=3.6  Score=29.25  Aligned_cols=136  Identities=11%  Similarity=0.047  Sum_probs=68.3

Q ss_pred             EEEEE-cCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcc---eeeE-EEEEEeCCCCeEEEEE
Q 046697           40 ITQRI-DAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPAS---TSTE-RLEILDDEKHILSFRV  114 (187)
Q Consensus        40 v~~~I-~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~---~v~E-rL~~~D~~~~~~sY~v  114 (187)
                      .+.+| ++|++.++.++.|...-+.|-+.+.++...-++. -.+-.+.+..-.|.+   .+.. +....++....+...+
T Consensus        49 ~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~~~~~-~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~~~~~v~~  127 (203)
T d1ln1a_          49 VFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNG-ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVIL  127 (203)
T ss_dssp             EEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETT-EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEE
T ss_pred             EEEEEcCCCHHHHHHHHcCHhHhhhhcccceEEEEEccCC-cEEEEEEcccccccCCceEEEEEEEEEccCCCCeEEEEE
Confidence            34578 5999999999999988778999988875542221 122223333222221   1211 2222333333322221


Q ss_pred             ---Ee-cccc-------CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697          115 ---VG-GEHR-------LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS  179 (187)
Q Consensus       115 ---ve-g~~p-------~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l  179 (187)
                         .+ ...|       +..+.+...+.+.+++++++++..   ..|+-..........+.....-..+..|++..
T Consensus       128 ~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~---~~Dp~G~iP~~lvn~~~~~~~~~~~~~l~k~~  200 (203)
T d1ln1a_         128 ARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYY---FDNPGGQIPSWLINWAAKNGVPNFLKDMARAC  200 (203)
T ss_dssp             EEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEE---EECCSSCCCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             eecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEE---EcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               12 1122       245566666667655567777543   34543223333333333444444455555543