Citrus Sinensis ID: 046771

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
QTKTHWTGSPTSYIARRQHALTFLSQSMESKFGRIDDRTVPSPSSPSPSSRSSSYSSDDQARRGNYSMVPDLLNNPRLLYTLQREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAMHRAREMGLSIDDRLLMQLHTMYPWFPFSRNLGLGFGNDVLPSTLPHFSHGLWSGLDVNKKDELTMLGKPDSNICGSKQKAATPAAGSGELPSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIISTSKKSTESRDSGGHEMKTKVQKESVKGNKTVVDLDQKVKGGLDGHSQRKKRKAKKAEVVLAKK
Secondary Structure (PSIPRED)
ccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccEEEEEccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccEEEEEccccEEEcccEEEEcccccccccccccHHHcccccccEEEEEcc
Coil and Loop (DISEMBL)
qtkthwtgsptSYIARRQHALTFLSQSmeskfgriddrtvpspsspspssrsssyssddqarrgnysmvpdllnnpRLLYTLQREIEKEIIRREIIAAEIErrrlpeeeASRELMIEREMAMHRAREMGLSIDDRLLMQLhtmypwfpfsrnlglgfgndvlpstlphfshglwsgldvnkkdeltmlgkpdsnicgskqkaatpaagsgelpskssnkptkwscalCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIISTskkstesrdsgghemkTKVQkesvkgnktvvdldqkvkggldghsqrKKRKAKKAEVVLAKK
Flexible Loop (DISEMBL)
qtkthwtgsptsyiARRQHALTFLSQSMESKfgriddrtvpspsspspssrsssyssddqarrgnysmvpdllnnPRLLYTLQREIEKEIIRREiiaaeierrrlpeeeasRELMIEREMAMHRAREMGLSIDDRLLMQLHTMYPWFPFSRNLGLGFGNDVLPSTLPHFSHGLWSGLDVNKKDELTMLGKPDSNICGSKQKaatpaagsgelpskssnkptKWSCALCQVSATTARGLYAHlqgkkhkakekllRDLKMFIIstskkstesrdsgghemktkvqkesvkgnktvvdldqkvkggldghsqrkkrkakkaevvlakk
Low Complexity Region (SEG)
QTKTHWTGSPTSYIARRQHALTFLSQSMESKFGRIDDRTVpspsspspssrsssyssDDQARRGNYSMVPDLLNNPRLLYTLQreiekeiirreiiaaeierrrlpeeeaSRELMIEREMAMHRAREMGLSIDDRLLMQLHTMYPWFPFSRNLGLGFGNDVLPSTLPHFSHGLWSGLDVNKKDELTMLGKPDSNICGSKQKAATPAAGSGELPSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIISTSKKSTESRDSGGHEMKTKVQKESVKGNKTVVDLDQKVKGGLDGHSQrkkrkakkaevvlakk
Disordered region (IsUnstruct)
********************************************************************VPDLLNNPRLLYTLQREIEKEIIRREIIAAEI***************************MGLSIDDRLLMQLHTMYPWFPFSRNLGLGFGNDVLPSTLPHFSHGLWSGLDVNK****************************************KWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFII****************************************************************
Disordered Region (DISOPRED)
********SPTSYIARRQHALTFLSQSMESKFGR***********************************************************EIIAAEIERRRLPEE*******************************************************************************************************************SCALCQVSATTARGLYAHLQ***********************************************************************************
Disordered Region (DISEMBL)
**********TSYIARRQHALTFLSQSMESKFGRID*************************RRGNYSMVPDLLNNPRLLYTLQREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAMHRAREMGLSIDDRLLMQLHTMYPWFPFSRNLGLGFGNDVLPSTLPHFSHGLWSGLDVNKKDELTMLGKPDSNICG************************KWSCALCQVSATTARGLYAH********KEKLLRDLKMFIISTS***********************KGNKTVVDLDQKVKG***********************
Disordered Region (DISPRO)
*****WTGSPTSYIARRQHALTFLSQSMESKFGRIDDRTVPSPSSPSPSSRSSSYSSDDQARRGNYSMVPDLLNNPRLLYTLQREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAMHRAREMGLSIDDRLLMQLHTMYPWFPFSRNLGLGFGNDVLPSTLPHFSHGLWSGLDVNKKDELTMLGKP*****************************TKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIISTSKK*T*SR*SGGHEMKTKVQKESVKGNKTVVDLDQ***************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QTKTHWTGSPTSYIARRQHALTFLSQSMESKFGRIDDRTVPSPSSPSPSSRSSSYSSDDQARRGNYSMVPDLLNNPRLLYTLQREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAMHRAREMGLSIDDRLLMQLHTMYPWFPFSRNLGLGFGNDVLPSTLPHFSHGLWSGLDVNKKDELTMLGKPDSNICGSKQKAATPAAGSGELPSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIISTSKKSTESRDSGGHEMKTKVQKESVKGNKTVVDLDQKVKGGLDGHSQRKKRKAKKAEVVLAKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
255577041	423	hypothetical protein RCOM_0623850 [Ricin	0.665	0.513	0.411	5e-28
224091795	291	predicted protein [Populus trichocarpa]	0.328	0.367	0.491	2e-17
356500669	332	PREDICTED: uncharacterized protein LOC10	0.641	0.629	0.322	6e-16
357480033	556	hypothetical protein MTR_4g130690 [Medic	0.634	0.372	0.310	4e-12
297825315	456	predicted protein [Arabidopsis lyrata su	0.260	0.186	0.386	2e-08
297743659	220	unnamed protein product [Vitis vinifera]	0.276	0.409	0.47	3e-08
147784015	203	hypothetical protein VITISV_012828 [Viti	0.276	0.443	0.46	4e-08
359484879	186	PREDICTED: uncharacterized protein LOC10	0.276	0.483	0.46	4e-08
224091801	187	predicted protein [Populus trichocarpa]	0.337	0.588	0.412	5e-08
242096554	601	hypothetical protein SORBIDRAFT_10g02579	0.180	0.098	0.442	1e-05

>gi|255577041|ref|XP_002529405.1| hypothetical protein RCOM_0623850 [Ricinus communis] gi|223531153|gb|EEF33001.1| hypothetical protein RCOM_0623850 [Ricinus communis]

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/260 (41%), Positives = 134/260 (51%), Gaps = 43/260 (16%)

Query: 28  MESKFGRIDDRTVPSPSSPSPSSRSSSYSSDDQARRGNYSMV-----PDLLNNPRLLYTL 82
           ME +F   D R  P      PSS  ++Y S+  A R NY ++      DL+ N      L
Sbjct: 1   MEFRFRAADSR--PPEYFFHPSSSGTAYFSE-HAFRANYHVIDSTQDSDLMRNE----ML 53

Query: 83  QREIEKEIIRREIIAAEIE-RRRLPEEEASRELMIEREMAMHRAREMGLSIDDRLLMQLH 141
            RE+EK+ IR +II  E+  RRR+ E E  RE+MIERE+AM   R +G   DD     L 
Sbjct: 54  HREMEKDRIREQIIMEEMTMRRRILEAEVRREMMIEREIAM---RAVGGYNDDSYEETLE 110

Query: 142 --TMYPWFPFSRNL------------GLGFGNDVLPSTLPHFSHGLWSGLDVN-----KK 182
              + P F F   L            G GF  D  P  L       W+G DVN      K
Sbjct: 111 PTILAPQFHFMNQLNNRRVEDRPAFPGRGFL-DHSPRRLSE----AWAGPDVNAAKENSK 165

Query: 183 DELTMLGKPDSNICGSKQKAATP-AAGSGELPSKSSNKPTK--WSCALCQVSATTARGLY 239
            ++ +L KPD N+ G K+KAATP   G+ ELP     K  K  WSCALC+VSAT+ +GL 
Sbjct: 166 GKVVVLAKPDPNLFGVKRKAATPPVGGTHELPCTVLKKKPKEEWSCALCRVSATSEQGLN 225

Query: 240 AHLQGKKHKAKEKLLRDLKM 259
            HL+GKKHKAKE  LR  KM
Sbjct: 226 NHLRGKKHKAKEARLRANKM 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091795|ref|XP_002309354.1| predicted protein [Populus trichocarpa] gi|222855330|gb|EEE92877.1| predicted protein [Populus trichocarpa]

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 74/118 (62%), Gaps = 11/118 (9%)

Query: 187 MLGKPDSNICGSKQKAATPAAGS-GELPSKSSNKPTK--WSCALCQVSATTARGLYAHLQ 243
           M  KPD N+CG+K+KA TPAA S GELP     K  K  WSCALCQVSAT+ RGL  HLQ
Sbjct: 1   MKKKPDPNLCGAKRKAVTPAAESVGELPFAGIKKKPKEEWSCALCQVSATSERGLNEHLQ 60

Query: 244 GKKHKAKEKLLRDLKM--------FIISTSKKSTESRDSGGHEMKTKVQKESVKGNKT 293
           G++HKAKE  LR  KM            T+K +  +  + G EM+ K++ ES++ NK+
Sbjct: 61  GRRHKAKEAGLRAQKMARNPNKASLPKETTKTAKVTIPTAGLEMEAKIEDESLQLNKS 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500669|ref|XP_003519154.1| PREDICTED: uncharacterized protein LOC100786802 [Glycine max]

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 118/251 (47%), Gaps = 42/251 (16%)

Query: 28  MESKFGRIDDRTVPSPSSPSPSSRSSSYSSDDQARRGNYSM--VPDLLNNPRLLYT---- 81
           ME K+  + DR  P P  P     + +Y  D   R   +S    P  ++ PR+  T    
Sbjct: 1   MEFKYRAVQDRRTPPPPPPPHPLSTGTYVFDSPLRGYEFSSGGYPSNVSAPRVFLTPVPV 60

Query: 82  --------------LQREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAMHRARE 127
                         + RE+EKE IRREI+A E+ +RR  EEE  RE+ +ER + +    +
Sbjct: 61  NVGEAFRRELEKKQILRELEKEEIRREILAREMAQRRELEEEVMREITVERVLGISFREQ 120

Query: 128 MGLSIDDRLLMQLHTMYPWFPFSRNLGLGFGNDVLPSTLPHFSHGLWSGLDVNKKDELTM 187
           + +S++     Q H M    P + N+   FG    P   P         +  + KD++ +
Sbjct: 121 VSMSLN-----QNHRMNK--PINNNI---FGGS-QPRLPPQID------IKQSNKDKVII 163

Query: 188 LG--KPDSNICGSKQKAATPAAGSGELPSKSS--NKPTK-WSCALCQVSATTARGLYAHL 242
           L   KPD +  G+K+KA  P        S  S   KP + WSC LCQ++ T  +GL  HL
Sbjct: 164 LAGAKPDVDPYGAKRKAGKPPTIDDNHHSGFSVEKKPKREWSCGLCQITTTNEKGLNNHL 223

Query: 243 QGKKHKAKEKL 253
           +GKKHKAK  L
Sbjct: 224 EGKKHKAKASL 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480033|ref|XP_003610302.1| hypothetical protein MTR_4g130690 [Medicago truncatula] gi|355511357|gb|AES92499.1| hypothetical protein MTR_4g130690 [Medicago truncatula]

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 115/248 (46%), Gaps = 41/248 (16%)

Query: 13  YIARRQHALTFLSQS----MESKFGRIDDRTVPSPSSPSPSSRSSSYSSD-DQARRGNYS 67
           Y+      LTF+  S    ME KF  ID+    +PS+  PS  + +Y  D      G ++
Sbjct: 69  YLDSSWCELTFIYVSSFCSMEFKFRAIDNI---NPSTMQPSHPTVTYLPDRSLPMDGGFA 125

Query: 68  --MVPDLLNNPRLLYTLQREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAMHRA 125
               P   N       L+RE+EKE IRR+++     RR   E+E  REL +E      + 
Sbjct: 126 GFRAPLATNE----AALRREMEKEQIRRDML-----RRIELEDEVRRELAMEGAFGTMQK 176

Query: 126 REMGLSIDDRLLMQLHTMYPWFPFSRNLGLGFGNDVLPSTLPHFSHGLWSGLDVNKKDEL 185
               +  +   +M ++      P + +          P  + HF          + KD++
Sbjct: 177 PLNSVWSNSTPMMMMN------PVAVDASQ-------PPEIKHFPQ-------TSDKDKV 216

Query: 186 TMLGKPDSNICGSKQKAATPAAGSGELPSKSSNKPTK--WSCALCQVSATTARGLYAHLQ 243
            +L KPD ++ G+K+KA T  A + +  +    K  K  WSC LCQ+ AT+  GL AHL 
Sbjct: 217 ILLAKPDPDLYGAKRKALTLDAPNDDPYAIGMKKKPKEEWSCELCQIKATSESGLNAHLN 276

Query: 244 GKKHKAKE 251
           GKKHKAKE
Sbjct: 277 GKKHKAKE 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825315|ref|XP_002880540.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326379|gb|EFH56799.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 16/101 (15%)

Query: 41  PSPSSPSPSSRSSSYSSDDQARRGNYSMVPDLLNNPRLLYTLQREIEKEIIRREIIAAEI 100
           P+PS P  S+RS S  S++Q R                   +QREIEKE IR+EII AE 
Sbjct: 25  PNPSFPFFSARSMSGKSEEQVREA----------------MIQREIEKEKIRQEIIIAEA 68

Query: 101 ERRRLPEEEASRELMIEREMAMHRAREMGLSIDDRLLMQLH 141
            R+R    E  +E+ IEREM++ R  + G+S++++L+M ++
Sbjct: 69  ARKRELIAEVLQEMAIEREMSIRRVSDTGMSLEEKLIMWIN 109

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743659|emb|CBI36542.3| unnamed protein product [Vitis vinifera]

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 10/100 (10%)

Query: 28  MESKFGRIDDRTVPSPSSPSPSSRSSSYSSDDQARRGNYS----MVPDLLNNPR-LLYTL 82
           ME KF  +DDR  P   S SPS    +Y ++ QA R  YS    ++ +LL+NP  +   +
Sbjct: 1   MEFKFRAVDDR--PPYLSSSPSM--INYFTE-QALRAGYSNNGILLNELLSNPSDMREAI 55

Query: 83  QREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAM 122
           QRE+EKE IR EIIA EI RRRL E E  REL++E+E+ +
Sbjct: 56  QRELEKERIREEIIAREIARRRLLEAEVRRELLMEQELML 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784015|emb|CAN76834.1| hypothetical protein VITISV_012828 [Vitis vinifera]

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 10/100 (10%)

Query: 28  MESKFGRIDDRTVPSPSSPSPSSRSSSYSSDDQARRGNYS----MVPDLLNNPR-LLYTL 82
           ME KF  +DDR     SSPS      +Y ++ QA R  YS    ++ +LL+NP  +   +
Sbjct: 1   MEFKFRAVDDRPPYLSSSPS----MINYFTE-QALRAGYSNNGILLNELLSNPSDMREAI 55

Query: 83  QREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAM 122
           QRE+EKE IR EIIA EI RRRL E E  REL++E+E+ +
Sbjct: 56  QRELEKERIREEIIAREIARRRLLEAEVRRELLMEQELML 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484879|ref|XP_002275550.2| PREDICTED: uncharacterized protein LOC100241709 [Vitis vinifera]

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 10/100 (10%)

Query: 28  MESKFGRIDDRTVPSPSSPSPSSRSSSYSSDDQARRGNYS----MVPDLLNNPR-LLYTL 82
           ME KF  +DDR     SSPS      +Y ++ QA R  YS    ++ +LL+NP  +   +
Sbjct: 1   MEFKFRAVDDRPPYLSSSPS----MINYFTE-QALRAGYSNNGILLNELLSNPSDMREAI 55

Query: 83  QREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAM 122
           QRE+EKE IR EIIA EI RRRL E E  REL++E+E+ +
Sbjct: 56  QRELEKERIREEIIAREIARRRLLEAEVRRELLMEQELML 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091801|ref|XP_002309355.1| predicted protein [Populus trichocarpa] gi|222855331|gb|EEE92878.1| predicted protein [Populus trichocarpa]

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 66/126 (52%), Gaps = 16/126 (12%)

Query: 28  MESKFGRIDDRTVPSPSSPSPSSRSSSYSSDDQARRGNYS-----MVPDLLNNPRLLYTL 82
           ME KF   D+R    P   SPSS    +   +QA R +Y       +P+ + N   L   
Sbjct: 1   MEFKFRAGDNRP---PVCFSPSSSIGYFY--EQALRASYPNADPRQIPEPMRNELFL--- 52

Query: 83  QREIEKEIIRREIIAAEIERRRLPEEEASRELMIEREMAMHRAREMGLSIDDRLLMQLHT 142
            R IEKE IR EIIA E+  R+  E E  RELM+EREMAM   R  G+S ++RL MQ  +
Sbjct: 53  -RRIEKERIREEIIAQEMAWRQELEAEVRRELMVEREMAMRGGR--GMSFEERLTMQFDS 109

Query: 143 MYPWFP 148
             P  P
Sbjct: 110 RKPLLP 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242096554|ref|XP_002438767.1| hypothetical protein SORBIDRAFT_10g025790 [Sorghum bicolor] gi|241916990|gb|EER90134.1| hypothetical protein SORBIDRAFT_10g025790 [Sorghum bicolor]

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 11/70 (15%)

Query: 192 DSNICGSKQKAATPAAGSGEL-----------PSKSSNKPTKWSCALCQVSATTARGLYA 240
           ++N+ G K+KA   +A +              P+K  N    WSCALCQVSAT+  GL  
Sbjct: 178 EANVSGVKRKADASSATTKPTKLQNASSATTEPTKLQNAARDWSCALCQVSATSEAGLNQ 237

Query: 241 HLQGKKHKAK 250
           H+QGKKHKAK
Sbjct: 238 HIQGKKHKAK 247

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	1e-04
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	4e-04

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 223 WSCALCQVSATTARGLYAHLQGKKH 247
           + C LC V+ T+   L +HL+GKKH
Sbjct: 1   FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 221 TKWSCALCQVSATTARGLYAHLQGKKHKAKEKLL 254
             + C LC V+ T    + AHL+GKKHK   K  
Sbjct: 2   GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.31
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.0
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.47
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	94.95
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	93.08
KOG4727	193	consensus U1-like Zn-finger protein [General funct	93.01
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	92.56
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	92.1
KOG3032	264	consensus Uncharacterized conserved protein [Funct	92.07
PLN02748	468	tRNA dimethylallyltransferase	91.76
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	90.63
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	90.0
smart00355	26	ZnF_C2H2 zinc finger.	86.06
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	84.93
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	83.97
KOG4722	672	consensus Zn-finger protein [General function pred	83.11
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	83.06
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	81.5

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.31  E-value=2.6e-07  Score=56.93  Aligned_cols=25  Identities=36%  Similarity=0.748  Sum_probs=24.5

Q ss_pred             eeeccccccccchhhHHhhhcccch
Q 046771          223 WSCALCQVSATTARGLYAHLQGKKH  247 (326)
Q Consensus       223 WsCalCqVttTSE~~LnsHL~GKrH  247 (326)
                      |.|.+|+++++++..|+.|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            8999999999999999999999998

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.00  E-value=3e-06  Score=55.36  Aligned_cols=32  Identities=44%  Similarity=0.686  Sum_probs=29.8

Q ss_pred             ceeeccccccccchhhHHhhhcccchHHHHHH
Q 046771          222 KWSCALCQVSATTARGLYAHLQGKKHKAKEKL  253 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~  253 (326)
                      .|.|.+|+++++++..+.+|+.|++|+.+++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            58899999999999999999999999998864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.47  E-value=4.9e-05  Score=48.29  Aligned_cols=27  Identities=30%  Similarity=0.618  Sum_probs=25.2

Q ss_pred             ceeeccccccccchhhHHhhhcccchH
Q 046771          222 KWSCALCQVSATTARGLYAHLQGKKHK  248 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~GKrHk  248 (326)
                      .|.|.+|...+.++..|..|+.|++||
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            378999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=94.95  E-value=0.016  Score=54.24  Aligned_cols=40  Identities=28%  Similarity=0.403  Sum_probs=34.8

Q ss_pred             CCceeeccccccccchhhHHhhhcccchHHHHHHhhHhhh
Q 046771          220 PTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKM  259 (326)
Q Consensus       220 ~~eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L~a~~~  259 (326)
                      ...+.|-||.-.-.+|.+.-.|++||||+.+++.-.++..
T Consensus        51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~e~   90 (222)
T KOG0227|consen   51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEA   90 (222)
T ss_pred             CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHHHh
Confidence            4789999999999999999999999999999987544443

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=93.08  E-value=0.053  Score=31.61  Aligned_cols=21  Identities=24%  Similarity=0.624  Sum_probs=17.8

Q ss_pred             eeeccccccccchhhHHhhhc
Q 046771          223 WSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       223 WsCalCqVttTSE~~LnsHL~  243 (326)
                      |.|.+|..++.+...|+.|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            789999999999999999974

...

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=93.01  E-value=0.067  Score=49.33  Aligned_cols=34  Identities=21%  Similarity=0.515  Sum_probs=31.2

Q ss_pred             CceeeccccccccchhhHHhhhcccchHHHHHHh
Q 046771          221 TKWSCALCQVSATTARGLYAHLQGKKHKAKEKLL  254 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L  254 (326)
                      .-+-|.||..++-.-.++.+|++||+||-++..+
T Consensus        74 ~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   74 GGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             CceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            4789999999999999999999999999998754

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=92.56  E-value=0.06  Score=40.55  Aligned_cols=32  Identities=22%  Similarity=0.582  Sum_probs=27.0

Q ss_pred             CceeeccccccccchhhHHhhhcccchHHHHH
Q 046771          221 TKWSCALCQVSATTARGLYAHLQGKKHKAKEK  252 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~GKrHkAk~e  252 (326)
                      ..|.|.+|...+.+...|..|++.+.|+....
T Consensus        49 ~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   49 ESFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SSEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            46999999999999999999999999987644

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.10  E-value=0.13  Score=36.12  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=18.7

Q ss_pred             Cceeeccccccccch--hhHHhhhcccchHHHHHH
Q 046771          221 TKWSCALCQVSATTA--RGLYAHLQGKKHKAKEKL  253 (326)
Q Consensus       221 ~eWsCalCqVttTSE--~~LnsHL~GKrHkAk~e~  253 (326)
                      +.+-|..|.+..+.-  ..=..|++|.+|+.+++.
T Consensus         2 ~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    2 PRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             -S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             cCeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            357899999998543  345899999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.07  E-value=0.17  Score=48.60  Aligned_cols=43  Identities=23%  Similarity=0.421  Sum_probs=37.2

Q ss_pred             CCCCCCCCCceeeccccccccchhhHHhhhcccchHHHHHHhhH
Q 046771          213 PSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRD  256 (326)
Q Consensus       213 p~~~~K~~~eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L~a  256 (326)
                      |-...+.....+|.||.|-.- +.--.-|..||+|+.++++|+.
T Consensus        26 plakyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs   68 (264)
T KOG3032|consen   26 PLAKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS   68 (264)
T ss_pred             HhhccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence            444455567899999999988 9999999999999999999984

>PLN02748 tRNA dimethylallyltransferase

Probab=91.76  E-value=0.12  Score=52.82  Aligned_cols=39  Identities=23%  Similarity=0.432  Sum_probs=33.4

Q ss_pred             Cceeeccccc-cccchhhHHhhhcccchHHHHHHhhHhhh
Q 046771          221 TKWSCALCQV-SATTARGLYAHLQGKKHKAKEKLLRDLKM  259 (326)
Q Consensus       221 ~eWsCalCqV-ttTSE~~LnsHL~GKrHkAk~e~L~a~~~  259 (326)
                      +..+|.+|.- +...+..-+.|++||+|+..+..++.++.
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~~~  456 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQKQT  456 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhhhh
Confidence            4558999998 89999999999999999999987765443

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=90.63  E-value=0.22  Score=46.64  Aligned_cols=38  Identities=32%  Similarity=0.514  Sum_probs=33.2

Q ss_pred             CCC-CCceeeccccccccchhhHHhhhcccchHHHHHHh
Q 046771          217 SNK-PTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLL  254 (326)
Q Consensus       217 ~K~-~~eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L  254 (326)
                      .|. ..++.|-||.-+--+|.+...|++||||+.++..-
T Consensus        47 ~knh~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr   85 (222)
T COG5246          47 SKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR   85 (222)
T ss_pred             hhcCCCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence            344 47999999999999999999999999999998753

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.00  E-value=0.19  Score=30.03  Aligned_cols=21  Identities=24%  Similarity=0.665  Sum_probs=19.7

Q ss_pred             eeeccccccccchhhHHhhhc
Q 046771          223 WSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       223 WsCalCqVttTSE~~LnsHL~  243 (326)
                      |.|..|..++++...|+.|++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            689999999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>smart00355 ZnF_C2H2 zinc finger

Probab=86.06  E-value=0.37  Score=27.99  Aligned_cols=21  Identities=19%  Similarity=0.510  Sum_probs=19.3

Q ss_pred             eeeccccccccchhhHHhhhc
Q 046771          223 WSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       223 WsCalCqVttTSE~~LnsHL~  243 (326)
                      +.|..|..++.+...|+.|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            369999999999999999987

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=84.93  E-value=0.52  Score=28.77  Aligned_cols=19  Identities=32%  Similarity=0.658  Sum_probs=15.6

Q ss_pred             eeccccccccchhhHHhhhc
Q 046771          224 SCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       224 sCalCqVttTSE~~LnsHL~  243 (326)
                      .|..|..+++ +.+|..|++
T Consensus         2 ~C~~C~y~t~-~~~l~~H~~   20 (24)
T PF13909_consen    2 KCPHCSYSTS-KSNLKRHLK   20 (24)
T ss_dssp             E-SSSS-EES-HHHHHHHHH
T ss_pred             CCCCCCCcCC-HHHHHHHHH
Confidence            6999999999 999999985

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.97  E-value=0.47  Score=35.29  Aligned_cols=27  Identities=30%  Similarity=0.482  Sum_probs=23.1

Q ss_pred             ceeeccccccccchhhHHhhhcccchHHHH
Q 046771          222 KWSCALCQVSATTARGLYAHLQGKKHKAKE  251 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~GKrHkAk~  251 (326)
                      .=-|..|++.+.   +|..|+.+++|+.=.
T Consensus         5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    5 PGYCENCRVKYD---DLEEHIQSEKHRKFA   31 (49)
T ss_pred             CccCccccchhh---hHHHHhCCHHHHHHH
Confidence            446999999997   599999999999754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=83.11  E-value=0.62  Score=48.50  Aligned_cols=34  Identities=32%  Similarity=0.629  Sum_probs=29.9

Q ss_pred             CceeeccccccccchhhHHhhhcccchHHHHHHh
Q 046771          221 TKWSCALCQVSATTARGLYAHLQGKKHKAKEKLL  254 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L  254 (326)
                      .+--|.+|+|--+||--|-+|..|++||-.+-.|
T Consensus       492 rkkqcslcnvlissevylfshvkgrkhqqal~e~  525 (672)
T KOG4722|consen  492 RKKQCSLCNVLISSEVYLFSHVKGRKHQQALNEL  525 (672)
T ss_pred             hhhccchhhhhhhhhhhhhhhhcchhHHHHHHHH
Confidence            3557999999999999999999999999877554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=83.06  E-value=0.85  Score=28.21  Aligned_cols=21  Identities=19%  Similarity=0.475  Sum_probs=19.4

Q ss_pred             eeeccccccccchhhHHhhhc
Q 046771          223 WSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       223 WsCalCqVttTSE~~LnsHL~  243 (326)
                      ..|.+|+.++.+...|..|++
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCccCCccCChhHHHHHhH
Confidence            479999999999999999994

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=81.50  E-value=0.56  Score=35.04  Aligned_cols=28  Identities=25%  Similarity=0.371  Sum_probs=23.4

Q ss_pred             CceeeccccccccchhhHHhhhcccchHHHH
Q 046771          221 TKWSCALCQVSATTARGLYAHLQGKKHKAKE  251 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~GKrHkAk~  251 (326)
                      +.--|..|.+.+.   +|..|+.+++|+.=.
T Consensus         4 k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA   31 (49)
T smart00586        4 KPGYCENCREKYD---DLETHLLSEKHRRFA   31 (49)
T ss_pred             CCcccccHhHHHh---hHHHHhccHHHHHHH
Confidence            3456999999986   799999999999744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 28/271 (10%), Positives = 67/271 (24%), Gaps = 77/271 (28%)

Query: 68  MVPDLLNNPRLLYTLQREIEKEIIRR--------------EIIAAEIERRRLPEE--EAS 111
           M  D ++    L+      ++E++++                I  E  +  +        
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 112 RELM-----------IEREMAMHRAREMGLSIDDRLLMQLHTMYPWFPFSRNLGLGFGND 160
           R+ +           + R     + R+  L +     + +  +           LG G  
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-----------LGSGKT 164

Query: 161 VL-------PSTLPHFSHGL-WSGLDVNKKDELTMLGKPDSNICGSKQKAATPAAGSGEL 212
            +                 + W  L++   +    + +    +        T        
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWT------SR 216

Query: 213 PSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKL--LRD------LKMF---- 260
              SSN   +       + +  A  L   L+ K +  +  L  L +         F    
Sbjct: 217 SDHSSNIKLR-------IHSIQAE-LRRLLKSKPY--ENCLLVLLNVQNAKAWNAFNLSC 266

Query: 261 -IISTSKKSTESRDSGGHEMKTKVQKESVKG 290
            I+ T++    +                   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Length = 127

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 12/72 (16%), Positives = 27/72 (37%)

Query: 211 ELPSKSSNKPTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRDLKMFIISTSKKSTE 270
            L  ++S+  +   C +C     +     AH Q +KH  K +    +     S   K  +
Sbjct: 21  SLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFK 80

Query: 271 SRDSGGHEMKTK 282
           +  +   + + +
Sbjct: 81  AAPAEISDGEDR 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.59
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.59
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.05
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	90.42
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	87.54
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	87.53
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	86.54
1ard_A	29	Yeast transcription factor ADR1; transcription reg	86.04
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.86
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	85.68
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	85.52
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	85.52
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	84.88
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.75
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	84.51
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	84.41
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	84.27
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	84.0
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.51
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.25
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.72
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	83.34
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.46
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	82.2
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	82.08
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	81.9
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	81.82
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.71
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	81.61
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	81.44
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	81.28
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	81.08
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	80.99
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	80.97
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	80.93
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.93
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	80.87
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.86
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	80.65
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.6
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.52
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	80.18
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	80.17
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	80.76

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.59  E-value=2.6e-05  Score=63.96  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=32.4

Q ss_pred             CCceeeccccccccchhhHHhhhcccchHHHHHHh
Q 046771          220 PTKWSCALCQVSATTARGLYAHLQGKKHKAKEKLL  254 (326)
Q Consensus       220 ~~eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L  254 (326)
                      ...|.|.+|.++++|+..|++|+.||+|+.++.++
T Consensus        91 ~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~  125 (127)
T 1zu1_A           91 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR  125 (127)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHh
Confidence            46889999999999999999999999999998765

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.59  E-value=2.5e-05  Score=64.01  Aligned_cols=36  Identities=22%  Similarity=0.384  Sum_probs=33.0

Q ss_pred             CceeeccccccccchhhHHhhhcccchHHHHHHhhH
Q 046771          221 TKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRD  256 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L~a  256 (326)
                      +.|.|.+|+|+++|+..+..|++||+|+.++..+..
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            469999999999999999999999999999886654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.05  E-value=0.0037  Score=52.52  Aligned_cols=35  Identities=26%  Similarity=0.391  Sum_probs=32.8

Q ss_pred             CceeeccccccccchhhHHhhhcccchHHHHHHhh
Q 046771          221 TKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLR  255 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L~  255 (326)
                      +.+.|..|...|.++..|+.|+++|+|+..+..|+
T Consensus        49 kpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~   83 (124)
T 1zr9_A           49 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS   83 (124)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhc
Confidence            57999999999999999999999999999998875

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=90.42  E-value=0.13  Score=50.14  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=31.6

Q ss_pred             Cceeeccccc------cccchhhHHhhhcccchHHHHHHhhHh
Q 046771          221 TKWSCALCQV------SATTARGLYAHLQGKKHKAKEKLLRDL  257 (326)
Q Consensus       221 ~eWsCalCqV------ttTSE~~LnsHL~GKrHkAk~e~L~a~  257 (326)
                      +..+|.+|..      +...|..-+.|+.||+|+.++...+.+
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~  401 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ  401 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3448999998      899999999999999999998866444

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=87.54  E-value=0.25  Score=27.54  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=20.2

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|.+|.-++.....|+.|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            5899999999999999999974

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=87.53  E-value=0.25  Score=38.72  Aligned_cols=33  Identities=30%  Similarity=0.476  Sum_probs=26.7

Q ss_pred             ceeecccccccc--chhhHHhhhcccchHHHHHHh
Q 046771          222 KWSCALCQVSAT--TARGLYAHLQGKKHKAKEKLL  254 (326)
Q Consensus       222 eWsCalCqVttT--SE~~LnsHL~GKrHkAk~e~L  254 (326)
                      .|-|..|.+..|  |-..-..|++|++|+.+++..
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            578999999874  445568999999999988743

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=86.54  E-value=0.36  Score=26.85  Aligned_cols=22  Identities=18%  Similarity=0.516  Sum_probs=20.1

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|.+|.-++++...|..|.+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999975

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=86.04  E-value=0.34  Score=26.88  Aligned_cols=22  Identities=18%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|.+|.-+++....|..|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4689999999999999999974

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=85.86  E-value=0.34  Score=28.28  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=20.9

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.+.+...|+.|.+
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHH
Confidence            45899999999999999999974

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=85.68  E-value=0.4  Score=28.21  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.++....|+.|++
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=85.52  E-value=0.37  Score=26.59  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|.+|.-+++....|..|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            4789999999999999999974

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=85.52  E-value=0.2  Score=37.48  Aligned_cols=31  Identities=26%  Similarity=0.482  Sum_probs=28.9

Q ss_pred             eeccccccccchhhHHhhhcccchHHHHHHh
Q 046771          224 SCALCQVSATTARGLYAHLQGKKHKAKEKLL  254 (326)
Q Consensus       224 sCalCqVttTSE~~LnsHL~GKrHkAk~e~L  254 (326)
                      -|++|.|..+....|++|+--+.|-+++..+
T Consensus        15 eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~   45 (55)
T 2yrk_A           15 ECTLCGVKYSARLSIRDHIFSKQHISKVRET   45 (55)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             cccccCcccccccchhhhhccHHHHHHHHHH
Confidence            7999999999999999999999999988754

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=84.88  E-value=0.51  Score=26.53  Aligned_cols=22  Identities=23%  Similarity=0.714  Sum_probs=20.1

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|.+|...++....|+.|.+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999974

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.75  E-value=0.39  Score=28.28  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.+.+...|+.|++
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHHH
Confidence            46899999999999999999974

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=84.51  E-value=0.44  Score=26.36  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=20.1

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|..|.-++.....|..|.+
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5789999999999999999974

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.41  E-value=0.9  Score=29.02  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=22.3

Q ss_pred             CCCceeeccccccccchhhHHhhhc
Q 046771          219 KPTKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       219 ~~~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      ..+.+.|.+|.-+++....|+.|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHH
Confidence            3467999999999999999999975

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=84.27  E-value=0.46  Score=26.40  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      ...|..|.-.+.+...|+.|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4689999999999999999985

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=84.00  E-value=0.37  Score=26.46  Aligned_cols=22  Identities=27%  Similarity=0.527  Sum_probs=19.8

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|..|.-++.....|..|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.51  E-value=0.49  Score=28.06  Aligned_cols=23  Identities=26%  Similarity=0.703  Sum_probs=20.9

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.+.+...|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.25  E-value=0.61  Score=27.65  Aligned_cols=23  Identities=13%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|...+.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.72  E-value=0.57  Score=27.84  Aligned_cols=23  Identities=26%  Similarity=0.648  Sum_probs=20.8

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.+....+|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHH
Confidence            45899999999999999999974

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=83.34  E-value=0.25  Score=27.31  Aligned_cols=22  Identities=18%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|.+|.-.++....|..|.+
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            4689999999999999999974

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.46  E-value=0.58  Score=27.52  Aligned_cols=23  Identities=22%  Similarity=0.585  Sum_probs=20.9

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.+.....|+.|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=82.20  E-value=0.56  Score=45.90  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=29.0

Q ss_pred             ceeeccccccccchhhHHhhhcccchHHHHHHh
Q 046771          222 KWSCALCQVSATTARGLYAHLQGKKHKAKEKLL  254 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L  254 (326)
                      .--|..|+=-+.++..+.+||.||+|+.+.+..
T Consensus       292 ~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~  324 (402)
T 4dgw_A          292 GIYCPFCSRWFKTSSVFESHLVGKIHKKNESKR  324 (402)
T ss_dssp             EECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHS
T ss_pred             CeeehhhhhhhccccccHHHhcccccchhHHHH
Confidence            456999999999999999999999999876553

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=82.08  E-value=0.49  Score=26.14  Aligned_cols=22  Identities=18%  Similarity=0.676  Sum_probs=19.7

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|.+|...+.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            4689999999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=81.90  E-value=0.71  Score=25.26  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.1

Q ss_pred             eeeccccccccchhhHHhhhc
Q 046771          223 WSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       223 WsCalCqVttTSE~~LnsHL~  243 (326)
                      +.|.+|.-++.+...|..|.+
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            579999999999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=81.82  E-value=0.69  Score=27.44  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|...+.....|+.|++
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            46899999999999999999974

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.71  E-value=0.93  Score=26.79  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=21.0

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.+.....|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            56899999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.61  E-value=1.3  Score=27.67  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             CCceeeccccccccchhhHHhhhc
Q 046771          220 PTKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       220 ~~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.+.|.+|.-.+.....|+.|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHT
T ss_pred             CcCccCCCCCCccCChHHHHHHHH
Confidence            356999999999999999999975

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.44  E-value=0.79  Score=28.02  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.++....|+.|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHH
Confidence            46899999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=81.28  E-value=0.76  Score=28.12  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-++.+...|+.|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.08  E-value=0.72  Score=28.12  Aligned_cols=23  Identities=17%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-++++...|+.|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.99  E-value=0.8  Score=28.13  Aligned_cols=23  Identities=22%  Similarity=0.573  Sum_probs=21.1

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-++++...|+.|++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=80.97  E-value=0.65  Score=27.60  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.8

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|.+|.-.++...+|+.|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            4689999999999999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.93  E-value=1.3  Score=27.83  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             CCceeeccccccccchhhHHhhhc
Q 046771          220 PTKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       220 ~~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.+.|.+|.-+++....|+.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHH
Confidence            356899999999999999999975

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.93  E-value=0.71  Score=28.82  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=21.1

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-+++...+|+.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.87  E-value=0.71  Score=28.44  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.+++...|+.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHhh
Confidence            46899999999999999999984

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.86  E-value=0.79  Score=28.70  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.+++...|+.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.65  E-value=0.83  Score=28.51  Aligned_cols=23  Identities=17%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-+++....|+.|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            56899999999999999999984

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.60  E-value=0.86  Score=28.43  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-.+++...|+.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCEECCCCChhhCChHHHHHHHH
Confidence            56999999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.52  E-value=0.83  Score=28.60  Aligned_cols=23  Identities=26%  Similarity=0.577  Sum_probs=21.2

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-++++...|+.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            56999999999999999999984

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.18  E-value=0.77  Score=28.10  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=21.0

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-+++....|+.|++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCEeCCCcChhhCCHHHHHHHHH
Confidence            46999999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.17  E-value=0.78  Score=28.86  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=21.0

Q ss_pred             CceeeccccccccchhhHHhhhc
Q 046771          221 TKWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~  243 (326)
                      +.+.|.+|.-++.....|+.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHH
Confidence            56999999999999999999974

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=80.76  E-value=0.37  Score=26.90  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             ceeeccccccccchhhHHhhhc
Q 046771          222 KWSCALCQVSATTARGLYAHLQ  243 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~  243 (326)
                      .+.|..|.-++.+..+|+.|.+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            4789999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	96.33
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	96.15
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	90.22
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	84.39
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	82.4
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	80.98

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.00085  Score=49.59  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=33.2

Q ss_pred             CceeeccccccccchhhHHhhhcccchHHHHHHhhH
Q 046771          221 TKWSCALCQVSATTARGLYAHLQGKKHKAKEKLLRD  256 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L~a  256 (326)
                      ..|-|-.|.-.+.|+..|++|+.+|+|+..+.+|+.
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            469999999999999999999999999999988854

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.15  E-value=0.0023  Score=46.04  Aligned_cols=30  Identities=20%  Similarity=0.408  Sum_probs=27.7

Q ss_pred             eeeccccccccchhhHHhhhcccchHHHHH
Q 046771          223 WSCALCQVSATTARGLYAHLQGKKHKAKEK  252 (326)
Q Consensus       223 WsCalCqVttTSE~~LnsHL~GKrHkAk~e  252 (326)
                      --|.||+++++|...-++|..||.|..++.
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk   51 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLR   51 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHH
Confidence            379999999999999999999999998764

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=90.22  E-value=0.06  Score=40.23  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=30.0

Q ss_pred             ceeeccccccccchhhHHhhhcccchHHHHHHh
Q 046771          222 KWSCALCQVSATTARGLYAHLQGKKHKAKEKLL  254 (326)
Q Consensus       222 eWsCalCqVttTSE~~LnsHL~GKrHkAk~e~L  254 (326)
                      .--|-+|.+.-.||+.=.+|.+||+|..|+..+
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557999999999999999999999999988754

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.39  E-value=0.2  Score=31.55  Aligned_cols=26  Identities=31%  Similarity=0.655  Sum_probs=24.4

Q ss_pred             eeeccccccccchhhHHhhhcccchH
Q 046771          223 WSCALCQVSATTARGLYAHLQGKKHK  248 (326)
Q Consensus       223 WsCalCqVttTSE~~LnsHL~GKrHk  248 (326)
                      +.|..|.+++....+|-.|+..|-|.
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSKaH~   27 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSKAHS   27 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             cccceeeeeEeeccchhHhhhhhhhc
Confidence            68999999999999999999999885

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.40  E-value=0.34  Score=34.72  Aligned_cols=33  Identities=30%  Similarity=0.461  Sum_probs=26.1

Q ss_pred             ceeecccccccc-c-hhhHHhhhcccchHHHHHHh
Q 046771          222 KWSCALCQVSAT-T-ARGLYAHLQGKKHKAKEKLL  254 (326)
Q Consensus       222 eWsCalCqVttT-S-E~~LnsHL~GKrHkAk~e~L  254 (326)
                      ..-|..|.+-.| . -+.=..|++|++|+.+.+..
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~y   37 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHH
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHH
Confidence            467999999887 3 34457899999999998743

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.98  E-value=0.35  Score=30.93  Aligned_cols=26  Identities=27%  Similarity=0.503  Sum_probs=22.5

Q ss_pred             CceeeccccccccchhhHHhhhcccchH
Q 046771          221 TKWSCALCQVSATTARGLYAHLQGKKHK  248 (326)
Q Consensus       221 ~eWsCalCqVttTSE~~LnsHL~GKrHk  248 (326)
                      +.+.|.+|.-.++...+|+.|++  .|-
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r--~Ht   31 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLK--VHT   31 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG--GGT
T ss_pred             ccccCCCCCCcccChHHHHHHcc--ccC
Confidence            46899999999999999999984  553