Citrus Sinensis ID: 046781

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
MAFVWHAIIVFVVAAVDGNAEASNSNDIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL
ccHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHccccEEEEEEccccHHHHHccHHHHHHHHHHcccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHc
ccHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHHHHHHcccEEEEccccHHHHHHHcccccEEEEEEcHHHHHHHHHcHHHHHHHHHHHccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHc
MAFVWHAIIVFVVAAVdgnaeasnsndigfcygklendlpsatdvinpykkysigkirlfdpndaALNALRgsqidvtlgvrnedlpnlaasqdAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL
MAFVWHAIIVFVVAAVDGNAEASNSNDIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL
MAFVWHAIIVFVVAAVDGNAEASNSNDIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL
**FVWHAIIVFVVAAVDGNAEASNSNDIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNN**
**FVWHAIIVFVVAAVDGNAEASNSNDIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL
MAFVWHAIIVFVVAAVDGNAEASNSNDIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL
*AFVWHAIIVFVVAAVDGNAEASNSNDIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAFVWHAIIVFVVAAVDGNAEASNSNDIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query142 2.2.26 [Sep-21-2011]
P07979 370 Lichenase OS=Nicotiana pl N/A no 0.936 0.359 0.408 2e-23
P23535 348 Glucan endo-1,3-beta-gluc N/A no 0.774 0.316 0.473 2e-21
A7PQW3 344 Glucan endo-1,3-beta-gluc no no 0.788 0.325 0.474 3e-21
P52401 363 Glucan endo-1,3-beta-gluc N/A no 0.866 0.338 0.419 7e-21
Q03467 370 Glucan endo-1,3-beta-gluc N/A no 0.767 0.294 0.469 8e-21
P23431 365 Glucan endo-1,3-beta-gluc N/A no 0.880 0.342 0.392 9e-21
P27666 370 Glucan endo-1,3-beta-gluc N/A no 0.880 0.337 0.392 1e-20
P52400 337 Glucan endo-1,3-beta-gluc N/A no 0.683 0.287 0.463 2e-20
P23546 370 Glucan endo-1,3-beta-gluc N/A no 0.880 0.337 0.384 3e-20
P15797 371 Glucan endo-1,3-beta-gluc N/A no 0.880 0.336 0.384 3e-20
>sp|P07979|GUB_NICPL Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3 Back     alignment and function desciption
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 82/137 (59%), Gaps = 4/137 (2%)

Query: 10  VFVVAAVDGNAEASNSNDIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNA 69
           + ++  +  + E   +  +G CYG L N+LP A+ V+  YK  +I ++RL+DPN AAL A
Sbjct: 15  IILLGLLVSSTEIVGAQSVGVCYGMLGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQA 74

Query: 70  LRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIP----R 125
           LRGS I+V LGV N DL N+AA+   AN+W   N+  +   V F  IAVGN+V P     
Sbjct: 75  LRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTS 134

Query: 126 EFCQYVLPVMQILNNIL 142
              +Y+LP M+ + N +
Sbjct: 135 SLTRYLLPAMRNIRNAI 151

Nicotiana plumbaginifolia (taxid: 4092)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 7EC: 3
>sp|P23535|E13B_PHAVU Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1 Back     alignment and function description
>sp|A7PQW3|E13B_VITVI Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=VIT_06s0061g00120 PE=1 SV=2 Back     alignment and function description
>sp|P52401|E132_SOLTU Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1 Back     alignment and function description
>sp|Q03467|E13B_PEA Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|P23431|E13B_NICPL Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1 Back     alignment and function description
>sp|P27666|E13F_TOBAC Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P52400|E131_SOLTU Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1 Back     alignment and function description
>sp|P23546|E13E_TOBAC Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1 Back     alignment and function description
>sp|P15797|E13B_TOBAC Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query142
82754321238 glucanase [Rosa roxburghii] 0.781 0.466 0.603 8e-33
15241326 354 beta-1,3-glucanase 5 [Arabidopsis thalia 0.830 0.333 0.537 9e-27
15217468 335 putative beta-1,3-glucanase [Arabidopsis 0.802 0.340 0.521 3e-25
297808123 343 hypothetical protein ARALYDRAFT_910094 [ 0.964 0.399 0.482 5e-25
15241345 344 putative beta-1,3-glucanase [Arabidopsis 0.830 0.343 0.504 7e-25
255545504 340 Lichenase precursor, putative [Ricinus c 0.845 0.352 0.5 1e-24
297808103 345 beta-1,3-glucanase bg4 [Arabidopsis lyra 0.985 0.405 0.489 1e-24
297808125 353 hypothetical protein ARALYDRAFT_910095 [ 0.830 0.334 0.487 2e-24
15241384 337 putative beta-1,3-glucanase [Arabidopsis 0.845 0.356 0.483 6e-24
297808101 345 beta-1,3-glucanase bg4 [Arabidopsis lyra 0.985 0.405 0.475 9e-24
>gi|82754321|gb|ABB89957.1| glucanase [Rosa roxburghii] Back     alignment and taxonomy information
 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 84/111 (75%)

Query: 28  IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
           +G CYG L NDLP+AT+V+N YK++SI K+RLFDPN AAL AL+GS I V LG++N+DLP
Sbjct: 1   MGVCYGTLGNDLPAATEVVNLYKRHSITKMRLFDPNTAALQALKGSGISVILGIQNQDLP 60

Query: 88  NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQIL 138
            LAASQ+A N+WF  N+EPYL  +  S IAVGN+VIP     Y  PVM+ L
Sbjct: 61  ALAASQEAVNAWFTANVEPYLDGIELSYIAVGNEVIPGPVGNYDFPVMRFL 111

Source: Rosa roxburghii

Species: Rosa roxburghii

Genus: Rosa

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15241326|ref|NP_197534.1| beta-1,3-glucanase 5 [Arabidopsis thaliana] gi|2808439|emb|CAA56135.1| bg5 [Arabidopsis thaliana] gi|332005450|gb|AED92833.1| beta-1,3-glucanase 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15217468|ref|NP_174592.1| putative beta-1,3-glucanase [Arabidopsis thaliana] gi|9665167|gb|AAF97351.1|AC021045_8 Putative beta-1,3-glucanase 4 [Arabidopsis thaliana] gi|12322568|gb|AAG51282.1|AC027035_5 beta-1,3-glucanase, putative [Arabidopsis thaliana] gi|332193450|gb|AEE31571.1| putative beta-1,3-glucanase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297808123|ref|XP_002871945.1| hypothetical protein ARALYDRAFT_910094 [Arabidopsis lyrata subsp. lyrata] gi|297317782|gb|EFH48204.1| hypothetical protein ARALYDRAFT_910094 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15241345|ref|NP_197539.1| putative beta-1,3-glucanase [Arabidopsis thaliana] gi|17529182|gb|AAL38817.1| putative beta-1,3-glucanase [Arabidopsis thaliana] gi|20465463|gb|AAM20191.1| putative beta-1,3-glucanase [Arabidopsis thaliana] gi|332005455|gb|AED92838.1| putative beta-1,3-glucanase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255545504|ref|XP_002513812.1| Lichenase precursor, putative [Ricinus communis] gi|223546898|gb|EEF48395.1| Lichenase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297808103|ref|XP_002871935.1| beta-1,3-glucanase bg4 [Arabidopsis lyrata subsp. lyrata] gi|297317772|gb|EFH48194.1| beta-1,3-glucanase bg4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297808125|ref|XP_002871946.1| hypothetical protein ARALYDRAFT_910095 [Arabidopsis lyrata subsp. lyrata] gi|297317783|gb|EFH48205.1| hypothetical protein ARALYDRAFT_910095 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15241384|ref|NP_197556.1| putative beta-1,3-glucanase [Arabidopsis thaliana] gi|67633812|gb|AAY78830.1| putative beta-1,3-glucanase [Arabidopsis thaliana] gi|332005475|gb|AED92858.1| putative beta-1,3-glucanase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297808101|ref|XP_002871934.1| beta-1,3-glucanase bg4 [Arabidopsis lyrata subsp. lyrata] gi|297317771|gb|EFH48193.1| beta-1,3-glucanase bg4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query142
TAIR|locus:2149279 345 BETAG4 ""beta-1,3-glucanase 4" 0.971 0.4 0.489 1.9e-28
TAIR|locus:2149289 354 BG5 "beta-1,3-glucanase 5" [Ar 0.915 0.367 0.529 5e-28
TAIR|locus:2149209 344 AT5G20390 [Arabidopsis thalian 0.830 0.343 0.504 3.2e-26
TAIR|locus:2149917 337 AT5G20560 [Arabidopsis thalian 0.845 0.356 0.483 4e-26
TAIR|locus:2196658 335 AT1G33220 [Arabidopsis thalian 0.802 0.340 0.521 5.2e-26
TAIR|locus:2130329 344 AT4G16260 [Arabidopsis thalian 0.795 0.328 0.429 4.4e-20
TAIR|locus:2082518 341 BG3 ""beta-1,3-glucanase 3"" [ 0.760 0.316 0.454 5.7e-20
TAIR|locus:2082568 340 BG1 ""beta-1,3-glucanase 1"" [ 0.767 0.320 0.418 6.5e-19
TAIR|locus:2082543 339 BGL2 ""beta-1,3-glucanase 2"" 0.809 0.339 0.422 2.5e-18
TAIR|locus:2203206 346 AT1G77790 [Arabidopsis thalian 0.922 0.378 0.363 6.7e-18
TAIR|locus:2149279 BETAG4 ""beta-1,3-glucanase 4"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 69/141 (48%), Positives = 93/141 (65%)

Query:     3 FVWHAIIVFVVAAVDGNAEASNSNDIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDP 62
             F    I+++V +   G   A+NS  IG  YG L ++LPS ++VIN YK   I +IR+FDP
Sbjct:    11 FFLSCIVLYVNSNNSGFVTAANS--IGLNYGLLGDNLPSPSNVINLYKSIGISRIRIFDP 68

Query:    63 NDAALNALRGSQ-IDVTLGVRNEDLPNLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQ 121
             N   LNALRG + I+VT+GV+++DL  LAAS++A   WFA N+E YL DV  + I VGN+
Sbjct:    69 NTEVLNALRGHRDIEVTVGVKDQDLAALAASEEAVKGWFAANIESYLADVNITFITVGNE 128

Query:   122 VIPREFCQYVLPVMQILNNIL 142
             VIP      VLPVMQ L N++
Sbjct:   129 VIPGPIGPQVLPVMQSLTNLV 149
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0043169 "cation binding" evidence=IEA
TAIR|locus:2149289 BG5 "beta-1,3-glucanase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149209 AT5G20390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149917 AT5G20560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196658 AT1G33220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130329 AT4G16260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082518 BG3 ""beta-1,3-glucanase 3"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082568 BG1 ""beta-1,3-glucanase 1"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082543 BGL2 ""beta-1,3-glucanase 2"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2203206 AT1G77790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.39LOW CONFIDENCE prediction!
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
pfam00332 310 pfam00332, Glyco_hydro_17, Glycosyl hydrolases fam 3e-32
>gnl|CDD|215863 pfam00332, Glyco_hydro_17, Glycosyl hydrolases family 17 Back     alignment and domain information 
 Score =  115 bits (290), Expect = 3e-32
 Identities = 54/115 (46%), Positives = 73/115 (63%)

Query: 28  IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
           IG CYG   N+LPS +DV++ YK  +I ++R++DP+  AL ALRGS I+V LGV N+DL 
Sbjct: 1   IGVCYGVKGNNLPSPSDVVSLYKSNNIRRMRIYDPDTKALKALRGSGINVILGVPNDDLA 60

Query: 88  NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL 142
            LA SQ  A SW   N+ PY   V    IAVGN+V P     +++P M+ + N L
Sbjct: 61  ELAGSQSNAASWVQDNVRPYAPKVKIRYIAVGNEVSPGTTQSFLVPAMRNIRNAL 115

Length = 310

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 142
PF00332 310 Glyco_hydro_17: Glycosyl hydrolases family 17; Int 100.0
COG5309 305 Exo-beta-1,3-glucanase [Carbohydrate transport and 97.23
PF03198 314 Glyco_hydro_72: Glucanosyltransferase; InterPro: I 94.29
PF00925169 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: 92.94
PRK00393197 ribA GTP cyclohydrolase II; Reviewed 89.47
TIGR00505191 ribA GTP cyclohydrolase II. Several members of the 89.46
smart0048167 POLIIIAc DNA polymerase alpha chain like domain. D 88.57
cd00641193 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP 87.16
PRK12485369 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 83.87
PRK09314339 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 83.54
PRK14019367 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 82.06
PF02836 298 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM 80.35
PRK09311402 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 80.04
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3 Back     alignment and domain information 
Probab=100.00  E-value=3.7e-42  Score=289.11  Aligned_cols=115  Identities=45%  Similarity=0.728  Sum_probs=97.1

Q ss_pred             cceeecCCCCCCCChHHHHHHHHhCCCCeEEeeCCCHHHHhhhcCCCceEEeccCCCChhhhhcCHHHHHHHHHhcCcCC
Q 046781           28 IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPY  107 (142)
Q Consensus        28 iGVnyG~~g~nLPsp~~vv~llks~~i~~vRlyd~dp~vL~Ala~sgI~v~v~vpN~~l~~la~s~~~A~~WV~~nV~py  107 (142)
                      |||||||+|||||+|++||+|||+++|++|||||+||++||||+||||+|+++|||++|+++++++.+|..||++||.||
T Consensus         1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~   80 (310)
T PF00332_consen    1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY   80 (310)
T ss_dssp             EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred             CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEeeccccCCCccchhhHHHHHHHhhC
Q 046781          108 LKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL  142 (142)
Q Consensus       108 ~p~t~I~~I~VGNEv~~~~~~~~llPAM~Ni~~AL  142 (142)
                      +|+++|++|+||||++++....+|||||+|+|+||
T Consensus        81 ~~~~~i~~i~VGnEv~~~~~~~~lvpAm~ni~~aL  115 (310)
T PF00332_consen   81 LPAVNIRYIAVGNEVLTGTDNAYLVPAMQNIHNAL  115 (310)
T ss_dssp             TTTSEEEEEEEEES-TCCSGGGGHHHHHHHHHHHH
T ss_pred             CcccceeeeecccccccCccceeeccHHHHHHHHH
Confidence            99999999999999998654448999999999986

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane Back     alignment and domain information
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin Back     alignment and domain information
>PRK00393 ribA GTP cyclohydrolase II; Reviewed Back     alignment and domain information
>TIGR00505 ribA GTP cyclohydrolase II Back     alignment and domain information
>smart00481 POLIIIAc DNA polymerase alpha chain like domain Back     alignment and domain information
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA) Back     alignment and domain information
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
2cyg_A 312 Crystal Structure At 1.45- Resolution Of The Major 2e-22
3em5_A 316 Crystal Structure Of A Native Endo Beta-1,3-Glucana 1e-19
4gzi_A 323 Active-site Mutant Of Potato Endo-1,3-beta-glucanas 6e-19
3ur7_A 323 Higher-density Crystal Structure Of Potato Endo-1,3 6e-19
1ghs_A 306 The Three-Dimensional Structures Of Two Plant Beta- 7e-17
1aq0_A 306 Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space G 2e-14
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome Length = 312 Back     alignment and structure 
Iteration: 1

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 28  IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
           IG CYG L N+LP  ++V++ YK  +I ++RL+DPN AAL ALR S I V L V   D+ 
Sbjct: 1   IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 88  NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIP-REFCQYVLPVMQILNNIL 142
           +LA++  AA  W   N+  Y   V F  IAVGN++IP  +  QY+LP M+ + N L
Sbjct: 61  SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNAL 116
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis Length = 316 Back     alignment and structure
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In Complex With Laminaratriose Length = 323 Back     alignment and structure
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase Length = 323 Back     alignment and structure
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities Length = 306 Back     alignment and structure
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group Length = 306 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
1ghs_A 306 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulg 1e-28
2cyg_A 312 Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be 9e-28
1aq0_A 306 1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl 3e-27
3ur8_A 323 Glucan endo-1,3-beta-D-glucosidase; glucoside hydr 6e-26
3em5_A 316 Beta-1,3-glucanase; glycoprotein, rossmann fold, ( 2e-25
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3 Length = 306 Back     alignment and structure
 Score =  105 bits (263), Expect = 1e-28
 Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 28  IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
           IG CYG + N+LPS +DV+  Y+   I  +R++  +  AL+ALR S I + L + N+ L 
Sbjct: 1   IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60

Query: 88  NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPREFCQYVLPVMQILNNIL 142
           N+AAS   A SW   N+ PY   V    IA GN+V      Q +LP M+ LN  L
Sbjct: 61  NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGG-ATQSILPAMRNLNAAL 114
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3 Length = 312 Back     alignment and structure
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A Length = 306 Back     alignment and structure
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A Length = 323 Back     alignment and structure
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} PDB: 3f55_A* Length = 316 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query142
3em5_A 316 Beta-1,3-glucanase; glycoprotein, rossmann fold, ( 100.0
3ur8_A 323 Glucan endo-1,3-beta-D-glucosidase; glucoside hydr 100.0
1ghs_A 306 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulg 100.0
1aq0_A 306 1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl 100.0
2cyg_A 312 Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be 100.0
2w61_A 555 GAS2P, glycolipid-anchored surface protein 2; glyc 98.86
3nco_A 320 Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 95.53
1bqc_A 302 Protein (beta-mannanase); glycosyl hydrolase, fami 95.27
2whl_A 294 Beta-mannanase, baman5; glycoside hydrolase, hydro 94.91
3vup_A 351 Beta-1,4-mannanase; TIM barrel, digestive fluid, H 94.22
3aof_A 317 Endoglucanase; glycosyl hydrolase family 5, cellul 93.93
1wky_A 464 Endo-beta-1,4-mannanase; TIM barrel, catalytic dom 93.6
2cks_A 306 Endoglucanase E-5; carbohydrate metabolism, polysa 93.56
3jug_A 345 Beta-mannanase; TIM-barrel, glycosidase, hydrolase 93.06
1qnr_A 344 Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt 92.36
1hjs_A 332 Beta-1,4-galactanase; 4-galactanases, family 53 gl 92.13
1fob_A 334 Beta-1,4-galactanase; B/A barrel, glycosyl hydrola 91.17
4awe_A 387 Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana 91.14
3pzt_A 327 Endoglucanase; alpha/beta barrel, glycosyl hydrola 91.13
1ur4_A 399 Galactanase; hydrolase, beta-1, glycoside hydrolas 91.02
1egz_A 291 Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL 90.77
1uuq_A 440 Mannosyl-oligosaccharide glucosidase; hydrolase, m 89.77
2vrq_A 496 Alpha-L-arabinofuranosidase; hydrolase, glycosidas 89.74
4hty_A 359 Cellulase; (alpha/beta)8 barrel, family 5 endogluc 89.07
2c7f_A 513 Alpha-L-arabinofuranosidase; glycosidase, xylan, a 88.91
1ceo_A 343 Cellulase CELC; glycosyl hydrolase, family A/5 of 88.88
1h1n_A 305 Endo type cellulase ENGI; hydrolase, glycosyl hydr 88.61
1ece_A 358 Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. 88.44
1tvn_A 293 Cellulase, endoglucanase G; glycoside hydrolase, C 88.1
3cmg_A 667 Putative beta-galactosidase; structural genomics, 87.75
2bz1_A196 GTP cyclohydrolase II; riboflavin biosynthesis, ca 87.75
3fn9_A 692 Putative beta-galactosidase; structural genomics, 86.94
2c0h_A 353 Mannan endo-1,4-beta-mannosidase; hydrolase, signa 86.9
1vjz_A 341 Endoglucanase; TM1752, structural genomics, JCSG, 86.78
1qw9_A 502 Arabinosidase, alpha-L-arabinofuranosidase; hydrol 86.33
3qho_A 458 Endoglucanase, 458AA long hypothetical endo-1,4-be 84.83
1kwg_A 645 Beta-galactosidase; TIM barrel, glycoside hydrolas 84.55
2y2w_A 574 Arabinofuranosidase; hydrolase, arabinoxylan, glyc 84.51
3vny_A 488 Beta-glucuronidase; TIM barrel, greek-KEY, glycosi 83.81
1rh9_A 373 Endo-beta-mannanase; endo-beta-mannase, retaining, 83.71
1edg_A 380 Endoglucanase A; family A, cellulases, xylanases, 82.29
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 81.08
3tty_A 675 Beta-GAL, beta-galactosidase; TIM barrel, glycosid 80.5
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-43  Score=297.69  Aligned_cols=115  Identities=43%  Similarity=0.802  Sum_probs=110.5

Q ss_pred             ccceeecCCCCCCCChHHHHHHHHhCCCCeEEeeCCCHHHHhhhcCCCceEEeccCCCChhhhhcCHHHHHHHHHhcCcC
Q 046781           27 DIGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEP  106 (142)
Q Consensus        27 ~iGVnyG~~g~nLPsp~~vv~llks~~i~~vRlyd~dp~vL~Ala~sgI~v~v~vpN~~l~~la~s~~~A~~WV~~nV~p  106 (142)
                      .||||||++|||||||++||+|||++||++|||||+|+++|+||++|||+|+|||||+++++++ ++++|.+||++||.+
T Consensus         1 ~iGvnyG~~~~nlp~p~~vv~llks~gi~~VRlYdaD~~vL~Al~~sgi~v~vGV~n~~l~~la-~~~~A~~WV~~nV~~   79 (316)
T 3em5_A            1 EVGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQSLT-NPSNAKSWVQKNVRG   79 (316)
T ss_dssp             CCEEECCCCCTTCCCHHHHHHHHHHTTCCEEECSSCCHHHHHHHTTCCCEEEEEECGGGHHHHT-SHHHHHHHHHHHTGG
T ss_pred             CeeEEcCcCCCCCCCHHHHHHHHHHcCCCEEEEecCCHHHHHHhhcCCceEEEecccchhhhcc-CHHHHHHHHHHhhhh
Confidence            3899999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             CCCCceeEEEEeeccccCCC-c----cchhhHHHHHHHhhC
Q 046781          107 YLKDVVFSLIAVGNQVIPRE-F----CQYVLPVMQILNNIL  142 (142)
Q Consensus       107 y~p~t~I~~I~VGNEv~~~~-~----~~~llPAM~Ni~~AL  142 (142)
                      |+|.++|+||+||||++.+. .    ++.|+|||+|+|+||
T Consensus        80 y~p~~~I~~IaVGNEvl~~~~~t~~~~~~LvpAm~nv~~AL  120 (316)
T 3em5_A           80 FWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI  120 (316)
T ss_dssp             GTTTSCEEEEEEEESCCTTCTTTGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEEecccccCCCccccCHHHHHHHHHHHHHHH
Confidence            99999999999999999853 2    678999999999986
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A Back     alignment and structure
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3 Back     alignment and structure
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A Back     alignment and structure
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3 Back     alignment and structure
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Back     alignment and structure
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* Back     alignment and structure
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* Back     alignment and structure
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A Back     alignment and structure
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} Back     alignment and structure
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* Back     alignment and structure
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 Back     alignment and structure
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* Back     alignment and structure
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} Back     alignment and structure
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* Back     alignment and structure
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* Back     alignment and structure
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A Back     alignment and structure
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila} Back     alignment and structure
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A Back     alignment and structure
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* Back     alignment and structure
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 Back     alignment and structure
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* Back     alignment and structure
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A Back     alignment and structure
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* Back     alignment and structure
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Back     alignment and structure
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Back     alignment and structure
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A Back     alignment and structure
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A Back     alignment and structure
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 Back     alignment and structure
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Back     alignment and structure
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Back     alignment and structure
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* Back     alignment and structure
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Back     alignment and structure
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum} Back     alignment and structure
>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A* Back     alignment and structure
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 Back     alignment and structure
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 142
d2cyga1 312 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana ( 1e-31
d1ghsa_ 306 c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeu 2e-31
d1aq0a_ 306 c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeu 9e-29
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]} Length = 312 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Plant beta-glucanases
species: Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]

 Score =  112 bits (281), Expect = 1e-31
 Identities = 53/116 (45%), Positives = 73/116 (62%), Gaps = 1/116 (0%)

Query: 28  IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLP 87
           IG CYG L N+LP  ++V++ YK  +I ++RL+DPN AAL ALR S I V L V   D+ 
Sbjct: 1   IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60

Query: 88  NLAASQDAANSWFATNMEPYLKDVVFSLIAVGNQVIPR-EFCQYVLPVMQILNNIL 142
           +LA++  AA  W   N+  Y   V F  IAVGN++IP  +  QY+LP M+ + N L
Sbjct: 61  SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNAL 116
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]} Length = 306 Back     information, alignment and structure
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]} Length = 306 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query142
d2cyga1 312 Plant beta-glucanases {Banana (Musa acuminata), 1, 100.0
d1ghsa_ 306 Plant beta-glucanases {Barley (Hordeum vulgare), 1 100.0
d1aq0a_ 306 Plant beta-glucanases {Barley (Hordeum vulgare), 1 100.0
d1wkya2 297 Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 97.11
d1bqca_ 302 Beta-mannanase {Thermomonospora fusca [TaxId: 2021 96.43
d2c0ha1 350 endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed 94.61
d1bhga3 304 beta-Glucuronidase, domain 3 {Human (Homo sapiens) 94.33
d2vzsa5 339 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 93.26
d1uuqa_ 410 Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} 92.92
d1tvna1 293 Endoglucanase Cel5a {Pseudoalteromonas haloplankti 92.6
d1kwga2 393 A4 beta-galactosidase {Thermus thermophilus [TaxId 91.37
d1jz8a5 292 beta-Galactosidase, domain 3 {Escherichia coli [Ta 90.63
d1egza_ 291 Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 90.57
d1ur4a_ 387 Beta-1,4-galactanase {Bacillus licheniformis [TaxI 90.33
d2je8a5 348 Five-domain beta-mannosidase, domain 3 {Bacteroide 90.22
d1hjsa_ 332 Beta-1,4-galactanase {Thielavia heterothallica, ak 87.96
d7a3ha_ 300 Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId 87.75
d1ecea_ 358 Endocellulase E1 {Acidothermus cellulolyticus [Tax 87.67
d1yq2a5 297 beta-Galactosidase, domain 3 {Arthrobacter sp. c2- 87.44
d2hmva1134 Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} 85.43
d2bz1a1174 GTP cyclohydrolase II, RibA {Escherichia coli [Tax 85.36
d1foba_ 334 Beta-1,4-galactanase {Fungus (Aspergillus aculeatu 84.2
d1qw9a2 367 Alpha-L-arabinofuranosidase, catalytic domain {Bac 82.42
d1tg7a5 354 Beta-galactosidase LacA, N-terminal domain {Penici 81.12
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Plant beta-glucanases
species: Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]

Probab=100.00  E-value=3.9e-39  Score=266.06  Aligned_cols=115  Identities=46%  Similarity=0.832  Sum_probs=111.2

Q ss_pred             cceeecCCCCCCCChHHHHHHHHhCCCCeEEeeCCCHHHHhhhcCCCceEEeccCCCChhhhhcCHHHHHHHHHhcCcCC
Q 046781           28 IGFCYGKLENDLPSATDVINPYKKYSIGKIRLFDPNDAALNALRGSQIDVTLGVRNEDLPNLAASQDAANSWFATNMEPY  107 (142)
Q Consensus        28 iGVnyG~~g~nLPsp~~vv~llks~~i~~vRlyd~dp~vL~Ala~sgI~v~v~vpN~~l~~la~s~~~A~~WV~~nV~py  107 (142)
                      ||||||+.|||||||++|++|||++||++||+||+|+++|+|+++|||+|++|+||+++++++++++.|++|++++|++|
T Consensus         1 ~gi~yg~~~~nlps~~~vv~lLk~~~i~~IRlY~~d~~vL~A~~~tgi~v~lGv~n~~l~~~~~~~~~a~~wv~~~v~~~   80 (312)
T d2cyga1           1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQSLASNPSAAGDWIRRNVVAY   80 (312)
T ss_dssp             CEEECCCCCSSCCCHHHHHHHHHHTTCCEEEESSCCHHHHHHHTTSCCEEEEEECHHHHHHHHHCTTHHHHHHHHHTGGG
T ss_pred             CeeeCCCccCCCCCHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHhcCCEEEEeeccchhhhccCCHHHHHHHHHHHHhcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEeeccccCC-CccchhhHHHHHHHhhC
Q 046781          108 LKDVVFSLIAVGNQVIPR-EFCQYVLPVMQILNNIL  142 (142)
Q Consensus       108 ~p~t~I~~I~VGNEv~~~-~~~~~llPAM~Ni~~AL  142 (142)
                      +|.++|++|+||||++.. +....++|+|+|+|+||
T Consensus        81 ~~~~~I~~IaVGNE~l~~~~~~~~~lpa~~~~~~aL  116 (312)
T d2cyga1          81 WPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNAL  116 (312)
T ss_dssp             TTTSEEEEEEEEESCTTTSTTGGGHHHHHHHHHHHH
T ss_pred             CCCceEEEEEecCEEeeCCcCchhhcccHHHHHHHH
Confidence            999999999999999974 46788999999999885
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]} Back     information, alignment and structure
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]} Back     information, alignment and structure
>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} Back     information, alignment and structure
>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} Back     information, alignment and structure
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} Back     information, alignment and structure
>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} Back     information, alignment and structure
>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} Back     information, alignment and structure
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3 {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure