Citrus Sinensis ID: 046788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MPSTSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEcccccccccEEccccccccHHHHHHHHHHHHHHcccccccccccccEcccEEEEEEEccEEEEEEEEEEcccccEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MPSTSAIFCLLALATIHLssahnkpedYLKAHNEARasvgvgpmswdykladysHKHAQKlkgncnlkkpqvskysETIAWSSQGEITAAEFVKMCmdgkplydynsntcalngtkcaIYTQVVWRNSVRLgcakercnnngtlnfvicnydprgnvfgqrpy
Flexible Loop (DISEMBL)
MPSTSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLkgncnlkkpqVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERcnnngtlnfvicnydprgnvfgqrpy
Low Complexity Region (SEG)
MPSTSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY
Disordered region (IsUnstruct)
*****AIFCLLALATIHLSSAH*****YLKA***ARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNV******
Disordered Region (DISOPRED)
*PSTSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY
Disordered Region (DISEMBL)
MPSTSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY
Disordered Region (DISPRO)
MPSTSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSTSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
P07053	168	Pathogenesis-related prot	N/A	no	0.975	0.946	0.5	7e-37
P33154	161	Pathogenesis-related prot	yes	no	0.920	0.931	0.490	1e-36
P11670	177	Basic form of pathogenesi	N/A	no	0.944	0.870	0.490	7e-36
P09042	168	Pathogenesis-related prot	N/A	no	0.920	0.892	0.5	7e-36
P04284	159	Pathogenesis-related leaf	N/A	no	0.920	0.943	0.490	2e-35
Q04108	159	Pathogenesis-related leaf	N/A	no	0.920	0.943	0.477	2e-34
P08299	168	Pathogenesis-related prot	N/A	no	0.877	0.851	0.503	2e-33
Q41359	167	Pathogenesis-related prot	N/A	no	0.889	0.868	0.466	2e-32
Q00008	167	Pathogenesis-related prot	N/A	no	0.944	0.922	0.427	5e-31
Q05968	164	Pathogenesis-related prot	N/A	no	0.889	0.884	0.456	2e-30

>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1

 Score =  152 bits (385), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 103/164 (62%), Gaps = 5/164 (3%)

Query: 1   MPSTSAIFCLLALATI-HLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQ 59
           MPS   +  LL    I H S A N  +DYL AHN ARA VGV P++WD  +A Y+  +  
Sbjct: 9   MPSFFLVSTLLLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVS 68

Query: 60  KLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAI 119
           +L  +CNL      +Y E +A  S   +TAA+ V+M +D K  YD++SNTCA  G  C  
Sbjct: 69  QLAADCNLVHSH-GQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA-QGQVCGH 126

Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           YTQVVWRNSVR+GCA+ +CNN G +  V CNYDP GNV GQ PY
Sbjct: 127 YTQVVWRNSVRVGCARVKCNNGGYV--VSCNYDPPGNVIGQSPY 168

Probably involved in the defense reaction of plants against pathogens.
Nicotiana tabacum (taxid: 4097)

>sp|P33154|PR1_ARATH Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=At2g14610 PE=1 SV=1

 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 102/157 (64%), Gaps = 7/157 (4%)

Query: 7   IFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCN 66
           +F  L  A +  S A + P+DYL+ HN+AR +VGVGPM WD ++A Y+  +A++L+GNC 
Sbjct: 12  VFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCR 71

Query: 67  LKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWR 126
           L       Y E +AW S G+++    V M +  K  Y+Y +NTC  NG  C  YTQVVWR
Sbjct: 72  LIHSG-GPYGENLAWGS-GDLSGVSAVNMWVSEKANYNYAANTC--NGV-CGHYTQVVWR 126

Query: 127 NSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
            SVRLGCAK RCNN GT+  + CNYDPRGN   ++PY
Sbjct: 127 KSVRLGCAKVRCNNGGTI--ISCNYDPRGNYVNEKPY 161

Partially responsible for acquired pathogen resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1

 Score =  149 bits (376), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 100/161 (62%), Gaps = 7/161 (4%)

Query: 4   TSAIFCLLALAT-IHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLK 62
           T+ + C +  A  IH S A N P+DYL  HN AR  VGVGPM+WD +LA Y+  +A +  
Sbjct: 5   TTIVACFITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRI 64

Query: 63  GNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQ 122
           G+C +       Y E +A ++  ++ AA  VKM +D K  YDYNSN+C   G  C  YTQ
Sbjct: 65  GDCGMIHSH-GPYGENLA-AAFPQLNAAGAVKMWVDEKRFYDYNSNSCV--GGVCGHYTQ 120

Query: 123 VVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           VVWRNSVRLGCA+ R NN     F+ CNYDP GN  GQRP+
Sbjct: 121 VVWRNSVRLGCARVRSNNG--WFFITCNYDPPGNFIGQRPF 159

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3

 Score =  149 bits (376), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 4/154 (2%)

Query: 10  LLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKK 69
           LL L   H   A N  +DYL AHN ARA VGV P++WD ++A Y+  +A +L  +CNL  
Sbjct: 19  LLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVH 78

Query: 70  PQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSV 129
               +Y E +AW S   +TAA+ V+M ++ K  Y ++SNTCA  G  C  YTQVVWRNSV
Sbjct: 79  SH-GQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCA-QGQVCGHYTQVVWRNSV 136

Query: 130 RLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           R+GCA+ +CNN G +  V CNYDP GNV G+ PY
Sbjct: 137 RVGCARVQCNNGGYI--VSCNYDPPGNVIGKSPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P04284|PR06_SOLLC Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2

 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 95/157 (60%), Gaps = 7/157 (4%)

Query: 7   IFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCN 66
           + CL+ LA  H   A N P+DYL  HN+ARA VGVGPMSWD  LA  +  +A    G+CN
Sbjct: 10  LTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCN 69

Query: 67  LKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWR 126
           L     S   E +A    G+ T    V++ +  +P Y+Y +N C + G KC  YTQVVWR
Sbjct: 70  LIH---SGAGENLA-KGGGDFTGRAAVQLWVSERPSYNYATNQC-VGGKKCRHYTQVVWR 124

Query: 127 NSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           NSVRLGC + RCNN     F+ CNYDP GN  GQRPY
Sbjct: 125 NSVRLGCGRARCNNGWW--FISCNYDPVGNWIGQRPY 159

Probably involved in the defense reaction of plants against pathogens. Has antifungal activity.

Solanum lycopersicum (taxid: 4081)

>sp|Q04108|PR04_SOLLC Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 94/157 (59%), Gaps = 7/157 (4%)

Query: 7   IFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCN 66
           + CL+ LA  H   A N P+DYL  HN+ARA VGVGPMSWD  LA  +  +A    G+CN
Sbjct: 10  LTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCN 69

Query: 67  LKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWR 126
           L     S   E +A    G+ T    V++ +  +P Y+Y +N C + G  C  YTQVVWR
Sbjct: 70  LIH---SGAGENLA-KGGGDFTGRAAVQLWVSERPDYNYATNQC-VGGKMCGHYTQVVWR 124

Query: 127 NSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           NSVRLGC + RCNN     F+ CNYDP GN  G+RPY
Sbjct: 125 NSVRLGCGRARCNNGWW--FISCNYDPVGNWVGERPY 159

Probably involved in the defense reaction of plants against pathogens.

Solanum lycopersicum (taxid: 4081)

>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 96/147 (65%), Gaps = 4/147 (2%)

Query: 17  HLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYS 76
           H   A N  +DYL AHN ARA VGV P++WD ++A Y+  +A +L  +CNL      +Y 
Sbjct: 26  HSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSH-GQYG 84

Query: 77  ETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKE 136
           E +A  S   +TAA+ V+M +D K  YD++SNTCA  G  C  YTQVVWRNSVR+GCA+ 
Sbjct: 85  ENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARV 143

Query: 137 RCNNNGTLNFVICNYDPRGNVFGQRPY 163
           +CNN G +  V CNYDP GN  G+ PY
Sbjct: 144 QCNNGGYV--VSCNYDPPGNYRGESPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 93/148 (62%), Gaps = 3/148 (2%)

Query: 16  IHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKY 75
           +  S A N P+DY+ AHN AR++V VGP++WD  +A ++ ++AQ   G+C L      +Y
Sbjct: 23  VQYSVAQNSPQDYVDAHNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHSGDPRY 82

Query: 76  SETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAK 135
            E +A+ S  E+T    V M +  +  Y+ N+NTCA  G  C  YTQVVWRNSVR+GCA+
Sbjct: 83  GENLAFGSGFELTGRNAVDMWVAERNDYNPNTNTCAP-GKVCGHYTQVVWRNSVRIGCAR 141

Query: 136 ERCNNNGTLNFVICNYDPRGNVFGQRPY 163
            RCNN     F+ CNY P GN  GQRPY
Sbjct: 142 VRCNNGAW--FITCNYSPPGNYAGQRPY 167

Probably involved in the defense reaction of plants against pathogens.

Sambucus nigra (taxid: 4202)

>sp|Q00008|PRMS_MAIZE Pathogenesis-related protein PRMS OS=Zea mays GN=PRMS PE=2 SV=1

 Score =  133 bits (335), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 5/159 (3%)

Query: 7   IFCLLALAT-IHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
           ++ ++A AT +H S + N P+DYL   N ARA+VGVGP++W  KL  ++ K+A +  G+C
Sbjct: 12  LWLVMAAATAVHPSYSENSPQDYLTPQNSARAAVGVGPVTWSTKLQQFAEKYAAQRAGDC 71

Query: 66  NLKKPQVSKYSETIAWSSQG-EITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVV 124
            L+      Y E I W S G +  A + V+  +D K  Y+Y +N+CA  G  C  YTQVV
Sbjct: 72  RLQHSG-GPYGENIFWGSAGFDWKAVDAVRSWVDEKQWYNYATNSCAA-GKVCGHYTQVV 129

Query: 125 WRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           WR +  +GCA+  C +N  + F+ICNY+PRGN+ G +PY
Sbjct: 130 WRATTSIGCARVVCRDNRGV-FIICNYEPRGNIAGMKPY 167

Probably involved in the defense reaction of plants against pathogens.

Zea mays (taxid: 4577)

>sp|Q05968|PR1_HORVU Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 92/149 (61%), Gaps = 4/149 (2%)

Query: 16  IHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKY 75
           ++LS A N P+DY+  HN AR++VGVG +SW  KL  ++  +A +   +C L+      Y
Sbjct: 19  VNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSG-GPY 77

Query: 76  SETIAWSSQG-EITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCA 134
            E I W S G +  A++ V   +  K  YDY SNTCA  G  C  YTQVVWR S  +GCA
Sbjct: 78  GENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAA-GKVCGHYTQVVWRASTSIGCA 136

Query: 135 KERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           +  CNNN  + F+ CNY+PRGN+ GQ+PY
Sbjct: 137 RVVCNNNRGV-FITCNYEPRGNIIGQKPY 164

Probably involved in the defense reaction of plants against pathogens.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
255562124	162	STS14 protein precursor, putative [Ricin	0.938	0.944	0.531	2e-40
359744024	161	pathogensis-related protein 1a, partial	0.938	0.950	0.531	3e-39
224105801	161	predicted protein [Populus trichocarpa]	0.938	0.950	0.525	8e-39
163914225	160	putative pathogenesis-related protein 1	0.950	0.968	0.527	9e-39
224150051	161	predicted protein [Populus trichocarpa]	0.938	0.950	0.525	1e-38
307340515	160	pathogenesis-related protein 1 [Vitis hy	0.932	0.95	0.531	1e-38
307340507	160	pathogenesis-related protein 1 [Vitis hy	0.932	0.95	0.531	1e-38
225429115	160	PREDICTED: basic form of pathogenesis-re	0.932	0.95	0.531	1e-38
307340531	159	pathogenesis-related protein 1 [Vitis vi	0.932	0.955	0.531	1e-38
307340513	160	pathogenesis-related protein 1 [Vitis hy	0.932	0.95	0.525	2e-38

>gi|255562124|ref|XP_002522070.1| STS14 protein precursor, putative [Ricinus communis] gi|223538669|gb|EEF40270.1| STS14 protein precursor, putative [Ricinus communis]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 110/158 (69%), Gaps = 5/158 (3%)

Query: 6   AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
           A+ C++++A I  S A +  +DYL AHN AR  VG+GP++WD K+A Y+  HA + K +C
Sbjct: 9   ALVCIISIALIFSSHAQDTQQDYLNAHNSARGDVGLGPLTWDDKVASYAQHHANQHKSDC 68

Query: 66  NLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           +L   +   Y E +AWSS G+++  + VKM +D KP YDYNSN+CA +G  C  YTQVVW
Sbjct: 69  SLVHSE-GPYGENLAWSS-GDLSGTDAVKMWIDEKPYYDYNSNSCA-SGQICGHYTQVVW 125

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           R+SVRLGCAK  CNN GT  F+ CNYDP GN  GQRPY
Sbjct: 126 RSSVRLGCAKVSCNNGGT--FIGCNYDPPGNYIGQRPY 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359744024|gb|AEV57468.1| pathogensis-related protein 1a, partial [Prunus persica]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 102/158 (64%), Gaps = 5/158 (3%)

Query: 6   AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
           A  CL+ LA +  + A + P+DYL AHN ARA VGV P++WD  L  Y+ ++A    G+C
Sbjct: 9   AFVCLIGLALLQSTGAQDSPQDYLNAHNAARAQVGVAPLTWDPNLVAYAQRYANSRAGDC 68

Query: 66  NLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IA  S G+++    V + +  KP YDYNSNTCA  G  C  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIA-KSTGDLSGTAAVNLFVGEKPDYDYNSNTCAA-GKMCGHYTQVVW 125

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           RNSVRLGCAK RC N GT  F+ CNYDPRGN+ GQRPY
Sbjct: 126 RNSVRLGCAKARCTNGGT--FIGCNYDPRGNIRGQRPY 161

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105801|ref|XP_002313935.1| predicted protein [Populus trichocarpa] gi|222850343|gb|EEE87890.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 106/158 (67%), Gaps = 5/158 (3%)

Query: 6   AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
           A F L+ L+ I  S A + P+DYL AHN ARA+VGVGP++WD  +  Y+  +A +  G+C
Sbjct: 9   AFFTLITLSLILPSRAQDNPQDYLDAHNTARAAVGVGPLTWDTTVQAYAQNYANQRAGDC 68

Query: 66  NLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAWSS  +++  + VKM +D K  YDYNSN+CA  G +C  YTQVVW
Sbjct: 69  NLIHSG-GPYGENIAWSS-ADLSGTDAVKMWVDEKAYYDYNSNSCAA-GQQCGHYTQVVW 125

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           RNS RLGCAK +C+  GT  F+ CNYDP GNV GQ+PY
Sbjct: 126 RNSARLGCAKVKCSTGGT--FIGCNYDPPGNVVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|163914225|dbj|BAF95881.1| putative pathogenesis-related protein 1 [Vitis hybrid cultivar]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 85/161 (52%), Positives = 102/161 (63%), Gaps = 6/161 (3%)

Query: 3   STSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLK 62
           S  A+ C + LA  H+  A N P+DYL AHN ARA VGVGPMSWD  +A Y+  +A +  
Sbjct: 6   SPLALLCFMGLALAHICCAQNSPQDYLNAHNTARAQVGVGPMSWDNTVAAYAQNYANQRI 65

Query: 63  GNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQ 122
           G+CNL       Y E +AW S   +T  + V M +  K  YDYNSN+C   G +C  YTQ
Sbjct: 66  GDCNLVHSG-GPYGENLAWGSP-SLTGTDAVNMWVGEKSNYDYNSNSCV--GGQCGHYTQ 121

Query: 123 VVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           VVWRNSVRLGCA+ +CN  G   FV CNYDPRGN  GQRPY
Sbjct: 122 VVWRNSVRLGCARIQCNKGGW--FVTCNYDPRGNYIGQRPY 160

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224150051|ref|XP_002336902.1| predicted protein [Populus trichocarpa] gi|222837091|gb|EEE75470.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 106/158 (67%), Gaps = 5/158 (3%)

Query: 6   AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
           A F L+ L+ I  S A + P+DYL AHN ARA+VGVGP++WD  +  Y+  +A +  G+C
Sbjct: 9   AFFTLITLSLILPSRAQDNPQDYLDAHNAARAAVGVGPLTWDTTVQAYAQNYANQRAGDC 68

Query: 66  NLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAWSS  +++ A+ VKM +D K  YDYNSN+CA  G +C  YTQVVW
Sbjct: 69  NLVHSG-GPYGENIAWSS-ADLSGADAVKMWVDEKAYYDYNSNSCAA-GQQCGHYTQVVW 125

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           RNS RLGCAK +C+  GT  F+ CNYDP GN  GQ+PY
Sbjct: 126 RNSARLGCAKVKCSTGGT--FIGCNYDPPGNYVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340515|gb|ADN43419.1| pathogenesis-related protein 1 [Vitis hybrid cultivar]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 101/158 (63%), Gaps = 6/158 (3%)

Query: 6   AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
              C+L LA +H S A N  +DYL AHN ARA VGVG M+W+  +A Y+  +A +  G+C
Sbjct: 9   VFICVLGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 68

Query: 66  NLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW S G +T  + V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAWGS-GSLTGTDAVNLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 124

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           RNSVRLGCA+ +CNN G   FV CNYDP GN  GQRPY
Sbjct: 125 RNSVRLGCARVQCNNGGW--FVTCNYDPPGNYVGQRPY 160

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340507|gb|ADN43415.1| pathogenesis-related protein 1 [Vitis hybrid cultivar]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 101/158 (63%), Gaps = 6/158 (3%)

Query: 6   AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
              C+L LA +H S A N  +DYL AHN ARA VGVG M+W+  +A Y+  +A +  G+C
Sbjct: 9   VFICVLGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 68

Query: 66  NLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW S G +T  + V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAWGS-GSLTGTDAVDLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 124

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           RNSVRLGCA+ +CNN G   FV CNYDP GN  GQRPY
Sbjct: 125 RNSVRLGCARVQCNNGGW--FVTCNYDPPGNYVGQRPY 160

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429115|ref|XP_002273416.1| PREDICTED: basic form of pathogenesis-related protein 1 [Vitis vinifera] gi|307340517|gb|ADN43420.1| pathogenesis-related protein 1 [Vitis hybrid cultivar] gi|307340519|gb|ADN43421.1| pathogenesis-related protein 1 [Vitis hybrid cultivar] gi|307340521|gb|ADN43422.1| pathogenesis-related protein 1 [Vitis vinifera] gi|307340523|gb|ADN43423.1| pathogenesis-related protein 1 [Vitis vinifera] gi|307340525|gb|ADN43424.1| pathogenesis-related protein 1 [Vitis vinifera] gi|307340527|gb|ADN43425.1| pathogenesis-related protein 1 [Vitis vinifera]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 101/158 (63%), Gaps = 6/158 (3%)

Query: 6   AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
              CL+ LA +H S A N  +DYL AHN ARA VGVG M+W+  +A Y+  +A +  G+C
Sbjct: 9   VFICLVGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 68

Query: 66  NLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW S G +T  + V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAWGS-GSLTGTDAVNLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 124

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           RNSVRLGCA+ +CNN G   FV CNYDP GN  GQRPY
Sbjct: 125 RNSVRLGCARVQCNNGGW--FVTCNYDPPGNYVGQRPY 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340531|gb|ADN43427.1| pathogenesis-related protein 1 [Vitis vinifera]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 101/158 (63%), Gaps = 6/158 (3%)

Query: 6   AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
              CL+ LA +H S A N  +DYL AHN ARA VGVG M+W+  +A Y+  +A +  G+C
Sbjct: 8   VFICLVGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 67

Query: 66  NLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW S G +T  + V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 68  NLVHSN-GPYGENIAWGS-GSLTGTDAVNLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 123

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           RNSVRLGCA+ +CNN G   FV CNYDP GN  GQRPY
Sbjct: 124 RNSVRLGCARVQCNNGGW--FVTCNYDPPGNYVGQRPY 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340513|gb|ADN43418.1| pathogenesis-related protein 1 [Vitis hybrid cultivar] gi|307340529|gb|ADN43426.1| pathogenesis-related protein 1 [Vitis hybrid cultivar]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 101/158 (63%), Gaps = 6/158 (3%)

Query: 6   AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
              CL+ LA +H S A N  +DYL AHN ARA VGVG M+W+  +A Y+  +A +  G+C
Sbjct: 9   VFICLVGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 68

Query: 66  NLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW S G +T  + V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAWGS-GSLTGTDAVNLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 124

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           RNSVRLGCA+ +CNN G   F+ CNYDP GN  GQRPY
Sbjct: 125 RNSVRLGCARVQCNNGGW--FITCNYDPPGNYVGQRPY 160

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2064294	161	PR1 "AT2G14610" [Arabidopsis t	0.920	0.931	0.490	1.9e-37
TAIR|locus:2134178	163	AT4G33720 "AT4G33720" [Arabido	0.926	0.926	0.525	1e-36
TAIR|locus:2055240	161	PRB1 "AT2G14580" [Arabidopsis	0.944	0.956	0.469	4.6e-34
TAIR|locus:2091196	161	AT3G19690 "AT3G19690" [Arabido	0.950	0.962	0.453	4.7e-32
TAIR|locus:2180662	166	AT5G26130 "AT5G26130" [Arabido	0.938	0.921	0.462	8.8e-31
TAIR|locus:2134193	172	AT4G33730 "AT4G33730" [Arabido	0.840	0.796	0.451	3.8e-30
TAIR|locus:2005537	176	PR-1-LIKE "AT2G19990" [Arabido	0.822	0.761	0.464	5.6e-29
TAIR|locus:2031055	161	AT1G50060 "AT1G50060" [Arabido	0.865	0.875	0.441	5e-28
TAIR|locus:2134283	166	AT4G33710 "AT4G33710" [Arabido	0.969	0.951	0.420	1.7e-27
TAIR|locus:2126169	160	AT4G07820 "AT4G07820" [Arabido	0.950	0.968	0.401	1.6e-24

TAIR|locus:2064294 PR1 "AT2G14610" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 77/157 (49%), Positives = 102/157 (64%)

Query:     7 IFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCN 66
             +F  L  A +  S A + P+DYL+ HN+AR +VGVGPM WD ++A Y+  +A++L+GNC 
Sbjct:    12 VFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCR 71

Query:    67 LKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWR 126
             L       Y E +AW S G+++    V M +  K  Y+Y +NTC  NG  C  YTQVVWR
Sbjct:    72 LIHSG-GPYGENLAWGS-GDLSGVSAVNMWVSEKANYNYAANTC--NGV-CGHYTQVVWR 126

Query:   127 NSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
              SVRLGCAK RCNN GT+  + CNYDPRGN   ++PY
Sbjct:   127 KSVRLGCAKVRCNNGGTI--ISCNYDPRGNYVNEKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0009627 "systemic acquired resistance" evidence=IEP;RCA

GO:0005618 "cell wall" evidence=IDA

GO:0010266 "response to vitamin B1" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0006952 "defense response" evidence=TAS

TAIR|locus:2134178 AT4G33720 "AT4G33720" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 83/158 (52%), Positives = 102/158 (64%)

Query:     6 AIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNC 65
             AI   L L  +HL  A + P+D+L  HN ARA VGVGP+ WD K+A Y+  +A + KG+C
Sbjct:    13 AITFFLVLI-VHLK-AQDSPQDFLAVHNRARAEVGVGPLRWDEKVAAYARNYANQRKGDC 70

Query:    66 NLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
              +K    S Y E IAWSS G +T    V M +D +  YDY+SNTCA +  +C  YTQVVW
Sbjct:    71 AMKHSSGS-YGENIAWSS-GSMTGVAAVDMWVDEQFDYDYDSNTCAWD-KQCGHYTQVVW 127

Query:   126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
             RNS RLGCAK RCNN  T  F+ CNYDP GN  G+ PY
Sbjct:   128 RNSERLGCAKVRCNNGQT--FITCNYDPPGNWVGEWPY 163

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055240 PRB1 "AT2G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 77/164 (46%), Positives = 103/164 (62%)

Query:     3 STSAIFCLLAL---ATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQ 59
             S S I  +LA    A +    A +  +DY+ AHN+AR+ +GVGPM WD  LA Y+  +A 
Sbjct:     5 SYSRILIILAALVGALVVPLKAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYAN 64

Query:    60 KLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAI 119
             +LKG+C L   +   Y E +A  S G+++    V + ++ K  Y+Y++NTC  NG  C  
Sbjct:    65 QLKGDCRLVHSR-GPYGENLA-KSGGDLSGVAAVNLWVNEKANYNYDTNTC--NGV-CGH 119

Query:   120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
             YTQVVWRNSVRLGCAK RCNN GT+  + CNYDP GN   Q+PY
Sbjct:   120 YTQVVWRNSVRLGCAKVRCNNGGTI--ISCNYDPPGNYANQKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2091196 AT3G19690 "AT3G19690" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 73/161 (45%), Positives = 104/161 (64%)

Query:     4 TSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKG 63
             T+ +F LLA+A  + S A +  + +L+AHNEAR  VG+ P+ WD ++A Y+  +A +   
Sbjct:     6 TNILF-LLAIALFYGSLAEDLQQQFLEAHNEARNEVGLDPLVWDDEVAAYAASYANQRIN 64

Query:    64 NCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCA-LNGTKCAIYTQ 122
             +C L       + E IA SS GE++A +  +M ++ K  YDY+SNTC   NG  C  YTQ
Sbjct:    65 DCALVHSN-GPFGENIAMSS-GEMSAEDAAEMWINEKQYYDYDSNTCNDPNGGTCLHYTQ 122

Query:   123 VVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
             VVW+N+VRLGCAK  CN+ GT  F+ CNYDP GN  G++P+
Sbjct:   123 VVWKNTVRLGCAKVVCNSGGT--FITCNYDPPGNYIGEKPF 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180662 AT5G26130 "AT5G26130" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 74/160 (46%), Positives = 97/160 (60%)

Query:     5 SAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGN 64
             S I   LA A + L  A ++P+DYL  HN AR  VGV PM W      Y+  +AQ+ KG+
Sbjct:    13 SVIVLFLAFA-VPLK-AQDQPQDYLDEHNRARTQVGVPPMKWHAGAEQYAWNYAQQRKGD 70

Query:    65 CNLKKPQVSK-YSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQV 123
             C+L     +  Y E +AWS  G ++ AE VK+ ++ K  Y Y SNTC+ +G +C  YTQV
Sbjct:    71 CSLTHSNSNGLYGENLAWSG-GALSGAEAVKLWVNEKSDYIYASNTCS-DGKQCGHYTQV 128

Query:   124 VWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
             VWR S  +GCAK +C+N GT  FV CNY P GN  G+ PY
Sbjct:   129 VWRTSEWVGCAKVKCDNGGT--FVTCNYYPPGNYRGRWPY 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134193 AT4G33730 "AT4G33730" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 65/144 (45%), Positives = 90/144 (62%)

Query:    21 AHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKL-KGNCNLKKPQVSKYSETI 79
             +H  P+ YL+ HN ARA+V V P+ WD+ +A  +  +A  L  G C+L+      Y E +
Sbjct:    35 SHEYPDSYLRPHNAARAAVKVKPLRWDFGIATVAQDYANHLASGPCSLEHSS-GPYGENL 93

Query:    80 AWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCN 139
             A+ S G+++AA+ V M +  K  YD+ SN+C  +G  C  YTQVVWR S RLGC K +CN
Sbjct:    94 AFGS-GDMSAAQAVAMWVHEKSYYDFYSNSC--HGPACGHYTQVVWRGSARLGCGKAKCN 150

Query:   140 NNGTLNFVICNYDPRGNVFGQRPY 163
             N  ++  V+CNYDP GN  G RPY
Sbjct:   151 NGASI--VVCNYDPAGNYIGARPY 172

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2005537 PR-1-LIKE "AT2G19990" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 66/142 (46%), Positives = 88/142 (61%)

Query:    24 KPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIA--W 81
             KP++ L  HN+ARA VGVGPM W+  LA Y+  +A +   +C +K   +  + E +A  W
Sbjct:    41 KPQETLVVHNKARAMVGVGPMVWNETLATYAQSYAHERARDCAMKH-SLGPFGENLAAGW 99

Query:    82 SSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN 141
              +     A E+    M  K  YDY+SNTC  +G  C  YTQ+VWR+SVRLGCA  RC N+
Sbjct:   100 GTMSGPVATEY---WMTEKENYDYDSNTCGGDGV-CGHYTQIVWRDSVRLGCASVRCKND 155

Query:   142 GTLNFVICNYDPRGNVFGQRPY 163
               + +VIC+YDP GN  GQRPY
Sbjct:   156 EYI-WVICSYDPPGNYIGQRPY 176

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0042742 "defense response to bacterium" evidence=IEP

TAIR|locus:2031055 AT1G50060 "AT1G50060" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 64/145 (44%), Positives = 85/145 (58%)

Query:    19 SSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSET 78
             ++A N P+DYL +HN ARA VGV  + WD  LA Y+  ++   K +CNL       Y E 
Sbjct:    21 TNAQNTPQDYLNSHNTARAQVGVPNVVWDTTLAAYALNYSNFRKADCNLVHSN-GPYGEN 79

Query:    79 IAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERC 138
             +A  S    +A   VK+ +D KP Y Y  N C   G +C  YTQVVWR+SV++GCA+ +C
Sbjct:    80 LAKGSSSSFSAISAVKLWVDEKPYYSYAYNNCT-GGKQCLHYTQVVWRDSVKIGCARVQC 138

Query:   139 NNNGTLNFVICNYDPRGNVFGQRPY 163
              N  T  FV CNY+  GN  G+ PY
Sbjct:   139 TN--TWWFVSCNYNSPGNWVGEYPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134283 AT4G33710 "AT4G33710" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 69/164 (42%), Positives = 93/164 (56%)

Query:     2 PSTSAIFCL-LALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQK 60
             P T  +  L L LA      A ++ +DYL  HN AR  V V  + W    A Y+  +AQ+
Sbjct:     7 PQTLVLLALALVLAFAVPLKAQDRRQDYLDVHNHARDDVSVPHIKWHAGAARYAWNYAQR 66

Query:    61 LKGNCNL-KKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAI 119
              K +C L       +Y E +AWSS G+++ A  V++ +  K  Y + SNTC   G +C  
Sbjct:    67 RKRDCRLIHSNSRGRYGENLAWSS-GDMSGAAAVRLWVREKSDYFHKSNTCRA-GKQCGH 124

Query:   120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
             YTQVVW+NS  +GCAK +C+N GT  FV CNY   GNV G+RPY
Sbjct:   125 YTQVVWKNSEWVGCAKVKCDNGGT--FVTCNYSHPGNVRGRRPY 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126169 AT4G07820 "AT4G07820" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 65/162 (40%), Positives = 90/162 (55%)

Query:     2 PSTSAIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKL 61
             P+   +   LAL+      A ++P+DY  AHN AR SVGV P+ W   L  Y+  +A+K 
Sbjct:     6 PNLLVLAIALALSFSVPLKAQDQPQDYFNAHNRARVSVGVSPLMWSQTLTAYAQAYAEKR 65

Query:    62 KGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYT 121
             + +C L       Y ETI  +   + +A EFV   ++ K  YDY +NTC   G  C  Y 
Sbjct:    66 R-DCGLFLSG-GPYGETIK-ADIIDFSAEEFVSTFLNQKSDYDYTTNTCRA-GKSCDGYK 121

Query:   122 QVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
             QV++R SV LGCAK +CNN G L   IC+YDP   +  +RP+
Sbjct:   122 QVLFRKSVFLGCAKVKCNNGGFL--AICSYDP-SVILSERPF 160

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P33154	PR1_ARATH	No assigned EC number	0.4904	0.9202	0.9316	yes	no
P08299	PR1A_TOBAC	No assigned EC number	0.5034	0.8773	0.8511	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
cd05381	136	cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like ex	7e-56
cd05382	132	cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-lik	4e-27
cd00168	122	cd00168, SCP, SCP: SCP-like extracellular protein	3e-25
smart00198	144	smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 fa	7e-24
cd05384	129	cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like ex	1e-23
cd05380	144	cd05380, SCP_euk, SCP_euk: SCP-like extracellular	2e-18
cd05385	144	cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-l	3e-13
pfam00188	121	pfam00188, CAP, Cysteine-rich secretory protein fa	1e-12
cd05559	136	cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracel	1e-10
cd05383	138	cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellu	6e-04
cd05379	122	cd05379, SCP_bacterial, SCP_bacterial: SCP-like ex	0.002

>gnl|CDD|240181 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

 Score =  171 bits (436), Expect = 7e-56
 Identities = 70/139 (50%), Positives = 91/139 (65%), Gaps = 3/139 (2%)

Query: 25  PEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQ 84
           P+D+L AHN ARA+VGV P+ WD  LA Y+ ++A + +G+C L       Y E + W S 
Sbjct: 1   PQDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCAL-VHSNGPYGENLFWGSG 59

Query: 85  GEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTL 144
           G  +AA+ V   +  K  YDY+SNTCA  G  C  YTQVVWRN+ R+GCA+  C+N G +
Sbjct: 60  GNWSAADAVASWVSEKKYYDYDSNTCA-AGKMCGHYTQVVWRNTTRVGCARVTCDNGGGV 118

Query: 145 NFVICNYDPRGNVFGQRPY 163
            F+ICNYDP GN  GQRPY
Sbjct: 119 -FIICNYDPPGNYIGQRPY 136

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|240182 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

 Score = 98.4 bits (246), Expect = 4e-27
 Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 29  LKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIA--WSSQGE 86
           L AHNE RA  G  P+  D +LA  + K A+KL  +  L+    S Y E +A    S  +
Sbjct: 7   LDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPD 66

Query: 87  ITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNF 146
           +T  E V    +    YD+N        +K   +TQVVW++S  LG    +        +
Sbjct: 67  LTGEEAVDSWYNEIKKYDFNKP---GFSSKTGHFTQVVWKSSTELGVGVAKSKKGCV--Y 121

Query: 147 VICNYDPRGNV 157
           V+  Y P GNV
Sbjct: 122 VVARYRPAGNV 132

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms. Length = 132

>gnl|CDD|238097 cd00168, SCP, SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

 Score = 93.3 bits (232), Expect = 3e-25
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 14/132 (10%)

Query: 25  PEDYLKAHNEARASV-GVGPMSWDYKLADYSHKHAQKLKGNCNLK---KPQVSKYSETIA 80
            ++ ++ HN  RA V G+ PMSWD +LA  +  +A      C  K   +       E +A
Sbjct: 1   AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLA 56

Query: 81  WSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN 140
             S  ++T    V+   +    Y++         +    YTQVVW+N+ ++GC    C +
Sbjct: 57  AGS-YDMTGPAAVQAWYNEIKNYNFGQPGF---SSGTGHYTQVVWKNTTKIGCGVAFCGS 112

Query: 141 NGTLNFVICNYD 152
           N    +V+CNY 
Sbjct: 113 NSY--YVVCNYG 122

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. Little is known about the biological roles of the bacterial and archaeal SCP domains. Length = 122

>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

 Score = 90.5 bits (225), Expect = 7e-24
 Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 21/148 (14%)

Query: 23  NKPEDYLKAHNEARASVGVG-----------PMSWDYKLADYSHKHAQKLKGNCNLK-KP 70
            + ++ L AHN+ R+ V  G            ++WD +LA  +   A +    C      
Sbjct: 1   AQQQEILDAHNKLRSQVAGGFLAAPAASNMLKLTWDCELASSAQNWANQ----CPFGHST 56

Query: 71  QVSKYSETIAWSSQGE----ITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWR 126
               Y E +AW S         A+  V++  D    Y Y+SNTC     K   YTQVVW 
Sbjct: 57  PRPGYGENLAWWSSSTALPDTYASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWA 116

Query: 127 NSVRLGCAKERCNNNGTLN-FVICNYDP 153
            + ++GC    C +       V+CNYDP
Sbjct: 117 KTYKVGCGVANCPDGTKKKTVVVCNYDP 144

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function. Length = 144

>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

 Score = 89.3 bits (222), Expect = 1e-23
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 26  EDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQG 85
              L AHN  RA  GV P++W+  LA+Y+  +A     + NL       Y E +A    G
Sbjct: 4   SSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSG-GPYGENLAA---G 59

Query: 86  EITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLN 145
             +    V    D    YDY++            +TQ+VW+++ ++GCA + C       
Sbjct: 60  YPSGTSAVDAWYDEIEDYDYSNPG---FSEATGHFTQLVWKSTTQVGCAYKDCGGAWGW- 115

Query: 146 FVICNYDPRGNVFG 159
           +++C YDP GNV G
Sbjct: 116 YIVCEYDPAGNVIG 129

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune. Length = 129

>gnl|CDD|240180 cd05380, SCP_euk, SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

 Score = 76.0 bits (187), Expect = 2e-18
 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 26  EDYLKAHNEARASVGVG------------PMSWDYKLADYSHKHAQKLKGNCNLKKPQVS 73
           +  L AHNE R+ V  G             + WD +LA  +   A+      +       
Sbjct: 2   QAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKTCVFE-HSPCRNTG 60

Query: 74  KYSETIAWSSQG----EITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSV 129
              + +A  S      E  A + V    +    Y + SN      +    +TQ+VW  + 
Sbjct: 61  GVGQNLAAGSSTGSTVEELAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTT 120

Query: 130 RLGCAKERC-NNNGTLNFVICNYD 152
           ++GCA  RC  + G    V+CNY 
Sbjct: 121 KVGCAVARCGKDGGNKTVVVCNYS 144

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|240185 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 20/144 (13%)

Query: 26  EDYLKAHNEARASV-----GVGPMSWDYKLADYSHKHAQKLKG--NCNLKKPQVS--KYS 76
           ++ ++ HNE R+ V      +  M+WD  LA  +   A+K K   N  L K      K++
Sbjct: 4   DECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKKCKFKHNIYLGKRYKCHPKFT 63

Query: 77  ---ETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGC 133
              E I   S    +    V    +    YD+++N+C  +   C  YTQVVW  S ++GC
Sbjct: 64  SVGENIWLGSIYIFSPKNAVTSWYNEGKFYDFDTNSC--SRV-CGHYTQVVWATSYKVGC 120

Query: 134 AKERCNNNGTL----NFVICNYDP 153
           A   C N G +     FV CNY P
Sbjct: 121 AVAFCPNLGGIPNAAIFV-CNYAP 143

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|215778 pfam00188, CAP, Cysteine-rich secretory protein family

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 29  LKAHNEARASVGVGP-MSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAW---SSQ 84
           L  HNE R++ G  P +SWD  LA  +  HA      C         Y E +A    + +
Sbjct: 1   LNLHNELRSAAGGAPPLSWDPTLAAAAQDHAAY----CADNGYFGHDYGENLALVSVAGK 56

Query: 85  GEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTL 144
            +      V+   D    YD      A   +     T ++W  S ++GCA  +C  +G+ 
Sbjct: 57  ADDPGVAAVENWYDEAKDYDAAVGINAWM-SSPGHRTNLLWPKSTKVGCAVAKC-GDGSS 114

Query: 145 NFVICNY 151
            +V+CNY
Sbjct: 115 YYVVCNY 121

This is a large family of cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) that are found in a wide range of organisms, including prokaryotes and non-vertebrate eukaryotes, The nine subfamilies of the mammalian CAP 'super'family include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP 'super'family results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences. The Ca++-chelating function would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine from Heloderma horridum horridum blocks the Ca++ transporting ryanodine receptors. Length = 121

>gnl|CDD|240186 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 16/135 (11%)

Query: 29  LKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSS 83
           +  HN+ R+ V      +  M+WD +LA  +  +A+K   + N       +  E +  S+
Sbjct: 5   VDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYARKCIWDHN-PDRGHLRVGENLFIST 63

Query: 84  QGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN--- 140
                A + V+   + K  Y+YN+NTCA     C  YTQVVW N+ ++GC    C     
Sbjct: 64  GPPFDATKAVEDWNNEKLDYNYNTNTCA-PNKMCGHYTQVVWANTFKIGCGSYFCETLEV 122

Query: 141 ----NGTLNFVICNY 151
               N TL  ++CNY
Sbjct: 123 LRWENATL--LVCNY 135

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|240183 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDP 153
           YTQ+VW  S  +GCA   C N+    F +C+Y P
Sbjct: 104 YTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCP 137

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding. Length = 138

>gnl|CDD|240179 cd05379, SCP_bacterial, SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 13/83 (15%)

Query: 29 LKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGN-------CNLKKPQVSKYSETIAW 81
          L+  N  RA  G+ P++WD  LA  +  HA+ +  N        +   P     +    +
Sbjct: 5  LELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPY 64

Query: 82 SSQGE------ITAAEFVKMCMD 98
          SS GE       TA   V   M+
Sbjct: 65 SSAGENIAYGYSTAEAAVDGWMN 87

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
cd05381	136	SCP_PR-1_like SCP_PR-1_like: SCP-like extracellula	100.0
cd05384	129	SCP_PRY1_like SCP_PRY1_like: SCP-like extracellula	100.0
cd05382	132	SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracel	100.0
cd05385	144	SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extrac	100.0
smart00198	144	SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extra	100.0
cd05383	138	SCP_CRISP SCP_CRISP: SCP-like extracellular protei	100.0
cd05559	136	SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular prot	100.0
cd00168	122	SCP SCP: SCP-like extracellular protein domain, fo	100.0
KOG3017	225	consensus Defense-related protein containing SCP d	100.0
cd05380	144	SCP_euk SCP_euk: SCP-like extracellular protein do	100.0
PF00188	124	CAP: Cysteine-rich secretory protein family; Inter	99.89
TIGR02909	127	spore_YkwD uncharacterized protein, YkwD family. M	99.85
cd05379	122	SCP_bacterial SCP_bacterial: SCP-like extracellula	99.74
COG2340	207	Uncharacterized protein with SCP/PR1 domains [Func	99.34
PF11054	254	Surface_antigen: Sporozoite TA4 surface antigen; I	89.18
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	82.5
PF15240	179	Pro-rich: Proline-rich	81.69

>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

Probab=100.00  E-value=2.8e-44  Score=248.80  Aligned_cols=134  Identities=51%  Similarity=1.014  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccCCCCCHHHHHHHHHcCCCCCCC
Q 046788           26 EDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDY  105 (163)
Q Consensus        26 ~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~~y~~  105 (163)
                      ++||+.||.+|++++|++|+||++|+..||.||++|+..|...|+.. .+|||+++.......+.++|+.|++|...|++
T Consensus         2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~   80 (136)
T cd05381           2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNG-PYGENLFWGSGGNWSAADAVASWVSEKKYYDY   80 (136)
T ss_pred             hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCC-CCCceEEEecCCCCCHHHHHHHHHhccccCCC
Confidence            68999999999999999999999999999999998888899888776 59999998765456789999999999999999


Q ss_pred             CCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCC-CCeeEEEEEEecCCCCCCCCCCC
Q 046788          106 NSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN-NGTLNFVICNYDPRGNVFGQRPY  163 (163)
Q Consensus       106 ~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~-~~~~~~~vC~Y~p~gN~~g~~~Y  163 (163)
                      ..+.+.. +..++|||||||+++++||||++.|.+ ++.  ++||+|+|+||+.|++||
T Consensus        81 ~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~--~vvC~Y~p~gn~~g~~~Y  136 (136)
T cd05381          81 DSNTCAA-GKMCGHYTQVVWRNTTRVGCARVTCDNGGGV--FIICNYDPPGNYIGQRPY  136 (136)
T ss_pred             CCCCcCC-CccchHHHHHHHHhcCEeceEEEEeCCCCcE--EEEEEeeCCCCCCCCCCC
Confidence            8887766 668999999999999999999999987 445  899999999999999998

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

Probab=100.00  E-value=5.1e-40  Score=225.55  Aligned_cols=129  Identities=31%  Similarity=0.578  Sum_probs=113.0

Q ss_pred             CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccCCCCCHHHHHHHHHcCCCC
Q 046788           23 NKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPL  102 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~~  102 (163)
                      +.++.||+.||.+|+.++|+||+||++|+..||.||++|+..|.+.|+.. .+|||++.+.   .++.++|+.|++|...
T Consensus         1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~-~~geNi~~~~---~~~~~~v~~W~~e~~~   76 (129)
T cd05384           1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGG-PYGENLAAGY---PSGTSAVDAWYDEIED   76 (129)
T ss_pred             CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCC-CCCcEEEEec---CCHHHHHHHHHhhhhh
Confidence            46899999999999999999999999999999999997776666888876 6999998754   3688999999999999


Q ss_pred             CCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCCC
Q 046788          103 YDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFG  159 (163)
Q Consensus       103 y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g  159 (163)
                      |++..+.+   +..++|||||||+++++||||++.|+... ..++||+|+|+||+.|
T Consensus        77 y~~~~~~~---~~~~~h~tqmvw~~t~~vGCa~~~c~~~~-~~~~vC~Y~p~Gn~~g  129 (129)
T cd05384          77 YDYSNPGF---SEATGHFTQLVWKSTTQVGCAYKDCGGAW-GWYIVCEYDPAGNVIG  129 (129)
T ss_pred             CCCCCCCC---CCcccchhhhhhhccceeeeEEEEeCCCC-eEEEEEEEECCCCCCc
Confidence            99987554   34799999999999999999999998732 2389999999999876

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.

>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

Probab=100.00  E-value=3.2e-40  Score=227.16  Aligned_cols=130  Identities=33%  Similarity=0.539  Sum_probs=116.3

Q ss_pred             CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccC--CCCCHHHHHHHHHcCC
Q 046788           23 NKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQ--GEITAAEFVKMCMDGK  100 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~--~~~~~~~~v~~W~~e~  100 (163)
                      +++++||+.||.+|+.++|++|+||++|+..||.||++|+..+.+.|+.+..+|||+++...  ....+.++|+.|++|.
T Consensus         1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~   80 (132)
T cd05382           1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI   80 (132)
T ss_pred             CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence            47899999999999999999999999999999999998877777888877679999998764  3568899999999999


Q ss_pred             CCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCC
Q 046788          101 PLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNV  157 (163)
Q Consensus       101 ~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~  157 (163)
                      .+|++..+..   +..++|||||||+++++||||++.|+.+.+  ++||+|+|+||+
T Consensus        81 ~~y~~~~~~~---~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~--~~vC~Y~p~Gn~  132 (132)
T cd05382          81 KKYDFNKPGF---SSKTGHFTQVVWKSSTELGVGVAKSKKGCV--YVVARYRPAGNV  132 (132)
T ss_pred             ccCCCCCCCC---CCCCCCeEEeEecCCCceeeEEEEcCCCCE--EEEEEEeCCCCC
Confidence            9999985544   347999999999999999999999998666  899999999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.

>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

Probab=100.00  E-value=2.6e-37  Score=215.88  Aligned_cols=125  Identities=31%  Similarity=0.595  Sum_probs=108.2

Q ss_pred             CchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCC-----------CCccceEEeccCCC
Q 046788           23 NKPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQV-----------SKYSETIAWSSQGE   86 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------~~~Geni~~~~~~~   86 (163)
                      +++++||+.||.+|+++.     |++|+||++|+..||.||+    +|.+.|+..           ..+||||+....+.
T Consensus         1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~----~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~   76 (144)
T cd05385           1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAK----KCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYI   76 (144)
T ss_pred             CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHh----cCCCCCCchhhcccccccccCcccceeeecccCC
Confidence            478999999999999994     8999999999999999999    898887642           25899998876555


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCC---eeEEEEEEecCC
Q 046788           87 ITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG---TLNFVICNYDPR  154 (163)
Q Consensus        87 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~---~~~~~vC~Y~p~  154 (163)
                      ..+.++|+.||+|..+|+|..+.+..   .++|||||||++|++||||++.|+.++   ...++||+|+|+
T Consensus        77 ~~~~~av~~W~~e~~~y~~~~~~~~~---~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~  144 (144)
T cd05385          77 FSPKNAVTSWYNEGKFYDFDTNSCSR---VCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA  144 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCCC---cccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence            68999999999999999998776643   799999999999999999999998742   234899999994

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

Probab=100.00  E-value=2.8e-37  Score=215.44  Aligned_cols=127  Identities=33%  Similarity=0.634  Sum_probs=111.4

Q ss_pred             chHHHHHHHHHHHhhCC-----------CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccC----CCCC
Q 046788           24 KPEDYLKAHNEARASVG-----------VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQ----GEIT   88 (163)
Q Consensus        24 ~~~~iL~~hN~~R~~~~-----------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~----~~~~   88 (163)
                      .|+.||+.||.+|++++           |++|+||++||..||.||+    +|...|+....+|||+++...    ....
T Consensus         2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~GeNi~~~~~~~~~~~~~   77 (144)
T smart00198        2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWAN----QCPFGHSTPRGYGENLAWWSSSTDLPITY   77 (144)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHH----hCCCcCCCcCCcCcceEEecccCcccchh
Confidence            57899999999999999           9999999999999999999    999999887689999997653    2357


Q ss_pred             HHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCC-eeEEEEEEecCC
Q 046788           89 AAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG-TLNFVICNYDPR  154 (163)
Q Consensus        89 ~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~-~~~~~vC~Y~p~  154 (163)
                      +.++|+.|++|...|++..+.+...+..++|||||||+++++||||++.|+++. ...++||+|+|+
T Consensus        78 ~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~  144 (144)
T smart00198       78 ASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP  144 (144)
T ss_pred             HHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence            889999999999999998876653245799999999999999999999999864 234899999995

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.

>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

Probab=100.00  E-value=4e-37  Score=213.53  Aligned_cols=125  Identities=29%  Similarity=0.474  Sum_probs=107.8

Q ss_pred             chHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCC-------CCccceEEeccCCCCCHHH
Q 046788           24 KPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQV-------SKYSETIAWSSQGEITAAE   91 (163)
Q Consensus        24 ~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-------~~~Geni~~~~~~~~~~~~   91 (163)
                      .|+.||+.||.+|+.+.     |++|+||++||..||.||+    +|.+.|++.       ..+|||++... ......+
T Consensus         2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~~~~~GeNl~~~~-~~~~~~~   76 (138)
T cd05383           2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWAN----TCNLTHSPPNGRTIGGITCGENIFMSS-YPRSWSD   76 (138)
T ss_pred             HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHh----cCCCcCCchhhcccCCCCcceeeeccC-CCCCHHH
Confidence            47889999999999985     6789999999999999999    999888753       14799998765 3357889


Q ss_pred             HHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCC
Q 046788           92 FVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPR  154 (163)
Q Consensus        92 ~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~  154 (163)
                      +|+.||+|..+|+++.+.+.. +..++|||||||++|++||||++.|..+....++||+|+|+
T Consensus        77 av~~W~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~  138 (138)
T cd05383          77 VIQAWYDEYKDFKYGVGATPP-GAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA  138 (138)
T ss_pred             HHHHHHHHHHhCCCCCCCCCC-CCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence            999999999999999876554 66899999999999999999999998863234899999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t

>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

Probab=100.00  E-value=5.6e-36  Score=207.30  Aligned_cols=123  Identities=30%  Similarity=0.554  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC---CccceEEeccCCCCCHHHHHHHH
Q 046788           25 PEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSSQGEITAAEFVKMC   96 (163)
Q Consensus        25 ~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~~~~~~~~v~~W   96 (163)
                      |+.||+.||.+|+.++     |.+|+||++||..||.||+    +|.+.|++..   .+|||++....+...+.++|+.|
T Consensus         1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W   76 (136)
T cd05559           1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYAR----KCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW   76 (136)
T ss_pred             CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHH----hccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence            5789999999999996     7789999999999999999    9998887643   69999988765556899999999


Q ss_pred             HcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCC-----CeeEEEEEEec
Q 046788           97 MDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN-----GTLNFVICNYD  152 (163)
Q Consensus        97 ~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~-----~~~~~~vC~Y~  152 (163)
                      ++|..+|++..+.+.. +..++|||||||+++++||||++.|+++     ....++||+|+
T Consensus        77 ~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~  136 (136)
T cd05559          77 NNEKLDYNYNTNTCAP-NKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG  136 (136)
T ss_pred             HHHHHhcCCCCCCCCC-CCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence            9999999998887766 6689999999999999999999999752     12348999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

Probab=100.00  E-value=3.1e-35  Score=199.88  Aligned_cols=118  Identities=31%  Similarity=0.595  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHhhC-CCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC---CccceEEeccCCCCCHHHHHHHHHcCC
Q 046788           25 PEDYLKAHNEARASV-GVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSSQGEITAAEFVKMCMDGK  100 (163)
Q Consensus        25 ~~~iL~~hN~~R~~~-~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~~~~~~~~v~~W~~e~  100 (163)
                      +++||+.||.+|+++ +|+||+||++|+..||.||+    +|.+.|+...   .+|||++....+ .++.++|+.|++|.
T Consensus         1 ~~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~----~c~~~h~~~~~~~~~geNi~~~~~~-~~~~~~v~~W~~e~   75 (122)
T cd00168           1 AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLAAGSYD-MTGPAAVQAWYNEI   75 (122)
T ss_pred             CcHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHh----hccccCCCcccCCCCCceeEEecCC-CCHHHHHHHHHHHH
Confidence            367999999999999 99999999999999999999    8999887654   689999987643 68999999999999


Q ss_pred             CCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEec
Q 046788          101 PLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYD  152 (163)
Q Consensus       101 ~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~  152 (163)
                      .+|+|..+..   +..++||+||||+++++||||++.|+.++.  ++||+|+
T Consensus        76 ~~y~~~~~~~---~~~~~h~~qmvw~~s~~vGca~~~~~~~~~--~~vC~Y~  122 (122)
T cd00168          76 KNYNFGQPGF---SSGTGHYTQVVWKNTTKIGCGVAFCGSNSY--YVVCNYG  122 (122)
T ss_pred             HhCCCCCCCC---CCCccchhhhhcccCCeeeeEEEEcCCCCE--EEEEeCc
Confidence            9999985544   347999999999999999999999997666  8999995

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as

>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=216.01  Aligned_cols=137  Identities=35%  Similarity=0.669  Sum_probs=117.7

Q ss_pred             CchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCC-----CCCccceEEeccCCC------
Q 046788           23 NKPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQ-----VSKYSETIAWSSQGE------   86 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~-----~~~~Geni~~~~~~~------   86 (163)
                      +.++++++.||.+|..++     |++|+||++||..||.||+    +|.+.|+.     ...+|||+++.....      
T Consensus        40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~----~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~  115 (225)
T KOG3017|consen   40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWAN----TCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLD  115 (225)
T ss_pred             HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHh----hCCcccCccccccCCCCcccceeeccCCCCcccc
Confidence            468889999999999999     9999999999999999999    88887764     446799999876531      


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCcccCC--CCccchHHHHHHHhcCeeeEEEEEcCCCC---eeEEEEEEecCCCCCCC-C
Q 046788           87 ITAAEFVKMCMDGKPLYDYNSNTCALN--GTKCAIYTQVVWRNSVRLGCAKERCNNNG---TLNFVICNYDPRGNVFG-Q  160 (163)
Q Consensus        87 ~~~~~~v~~W~~e~~~y~~~~~~~~~~--~~~~~~ftq~vw~~t~~vGCa~~~c~~~~---~~~~~vC~Y~p~gN~~g-~  160 (163)
                      ..+..+++.|+.|...|++.++.+...  +..+||||||||++|++||||++.|+++.   ...++||+|+|+||..+ +
T Consensus       116 ~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~  195 (225)
T KOG3017|consen  116 TSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGE  195 (225)
T ss_pred             ccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCC
Confidence            567889999999999999999888642  56899999999999999999999999863   34589999999965555 6


Q ss_pred             CCC
Q 046788          161 RPY  163 (163)
Q Consensus       161 ~~Y  163 (163)
                      .||
T Consensus       196 ~~y  198 (225)
T KOG3017|consen  196 IPY  198 (225)
T ss_pred             CcC
Confidence            776

>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

Probab=100.00  E-value=9.9e-34  Score=196.97  Aligned_cols=123  Identities=29%  Similarity=0.561  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHhhC------------CCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC---CccceEEeccCC----
Q 046788           25 PEDYLKAHNEARASV------------GVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSSQG----   85 (163)
Q Consensus        25 ~~~iL~~hN~~R~~~------------~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~----   85 (163)
                      |+.||+.||.+|+++            .|++|+||++||..||.||+    +|...|+...   .+|||++.....    
T Consensus         1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~   76 (144)
T cd05380           1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAK----TCVFEHSPCRNTGGVGQNLAAGSSTGSTV   76 (144)
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHh----cCCCcCCcccCCCCCCcEEEEeccCCCCH
Confidence            468999999999999            69999999999999999999    9988887654   699999987643    


Q ss_pred             CCCHHHHHHHHHcCCCCCCCCCC-cccCCCCccchHHHHHHHhcCeeeEEEEEcCCC-CeeEEEEEEec
Q 046788           86 EITAAEFVKMCMDGKPLYDYNSN-TCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN-GTLNFVICNYD  152 (163)
Q Consensus        86 ~~~~~~~v~~W~~e~~~y~~~~~-~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~-~~~~~~vC~Y~  152 (163)
                      ...+.++|+.|++|...|++... .+.. +..++|||||||+++++||||++.|..+ ....++||+|+
T Consensus        77 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~  144 (144)
T cd05380          77 EELAEDAVNAWYNELKDYGFGSNPTNNF-NSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS  144 (144)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCccccc-ccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence            23688999999999999999875 2223 5689999999999999999999999863 23348999995

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins

Probab=99.89  E-value=5.3e-23  Score=137.07  Aligned_cols=119  Identities=27%  Similarity=0.462  Sum_probs=85.0

Q ss_pred             HHHHHHHH-hhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccCCCCC---HHHHHHHHHcCCCCCC
Q 046788           29 LKAHNEAR-ASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEIT---AAEFVKMCMDGKPLYD  104 (163)
Q Consensus        29 L~~hN~~R-~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~---~~~~v~~W~~e~~~y~  104 (163)
                      |+.||.+| ...++++|+||++|+..|+.+|+    .|...+......|+++.........   ....++.|+.+...++
T Consensus         1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (124)
T PF00188_consen    1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAK----YCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYN   76 (124)
T ss_dssp             HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHT----TTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEE
T ss_pred             CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhH----HhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccc
Confidence            78999999 88889999999999999999999    6766444444678888766533221   1112999999998887


Q ss_pred             CCCCc-ccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEe
Q 046788          105 YNSNT-CALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY  151 (163)
Q Consensus       105 ~~~~~-~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y  151 (163)
                      ..... .......++||+||+|.++++||||++.|+.+....++||.|
T Consensus        77 ~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y  124 (124)
T PF00188_consen   77 FQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY  124 (124)
T ss_dssp             TTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred             cccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence            77211 111145789999999999999999999999876223999998

Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....

>TIGR02909 spore_YkwD uncharacterized protein, YkwD family

Probab=99.85  E-value=1.2e-20  Score=129.01  Aligned_cols=107  Identities=14%  Similarity=0.216  Sum_probs=91.4

Q ss_pred             CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC----------------CccceEEeccCCC
Q 046788           23 NKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS----------------KYSETIAWSSQGE   86 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~----------------~~Geni~~~~~~~   86 (163)
                      ++++++|+.||.+|.+++++||+||+.|+..|+.||++|+..+.+.|..+.                ..||||+.+.   
T Consensus         3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~---   79 (127)
T TIGR02909         3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN---   79 (127)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC---
Confidence            457889999999999999999999999999999999999999988887531                3489998654   


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEe
Q 046788           87 ITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY  151 (163)
Q Consensus        87 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y  151 (163)
                      .++.++|+.|++                 ..+|+.+|+|.+.++||||++.+++|+.  |+|=.|
T Consensus        80 ~~~~~~v~~W~~-----------------S~gH~~nil~~~~~~~Gvg~~~~~~g~~--y~~q~F  125 (127)
T TIGR02909        80 STVEAVHNAWMN-----------------SPGHRANILNPNYTEIGVGYVEGGSGGI--YWTQMF  125 (127)
T ss_pred             CCHHHHHHHHHc-----------------CHhHHHHHcCCCcCeEeEEEEeCCCCCe--EEEEEe
Confidence            478899999954                 3589999999999999999999888765  565444

Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.

>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea

Probab=99.74  E-value=3.9e-17  Score=110.01  Aligned_cols=104  Identities=21%  Similarity=0.305  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCC----------------ccceEEeccCCCCCH
Q 046788           26 EDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSK----------------YSETIAWSSQGEITA   89 (163)
Q Consensus        26 ~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~----------------~Geni~~~~~~~~~~   89 (163)
                      +++++.+|.+|.+++++||+||.+|+..|+.+|.+|+....+.|.....                +|||++...   ..+
T Consensus         2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~---~~~   78 (122)
T cd05379           2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGY---STA   78 (122)
T ss_pred             hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccC---CCH
Confidence            5789999999999999999999999999999999999777777765322                389987665   278


Q ss_pred             HHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEe
Q 046788           90 AEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY  151 (163)
Q Consensus        90 ~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y  151 (163)
                      .++++.|++                 ..+|+.+|+|...+++|||++.+.++..  ++|..|
T Consensus        79 ~~~~~~w~~-----------------~~~H~~~ll~~~~~~~Gvg~~~~~~~~~--y~~~~f  121 (122)
T cd05379          79 EAAVDGWMN-----------------SPGHRANILNPDYTEVGVGVAYGGDGGY--YWVQVF  121 (122)
T ss_pred             HHHHHHHhC-----------------CHhHHHHHcCCCcceeeEEEEeCCCCCe--EEEEec
Confidence            999999953                 3579999999999999999999887665  666655

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.

>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]

Probab=99.34  E-value=6.2e-12  Score=92.72  Aligned_cols=100  Identities=17%  Similarity=0.220  Sum_probs=84.0

Q ss_pred             CCCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC----------------CccceEEeccC
Q 046788           21 AHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS----------------KYSETIAWSSQ   84 (163)
Q Consensus        21 ~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~----------------~~Geni~~~~~   84 (163)
                      .++..+.+++.+|.+|.++++++|+||.+|+..|+.+++.|+.+..+.|..+.                .+||||+.+..
T Consensus        77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~  156 (207)
T COG2340          77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN  156 (207)
T ss_pred             cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC
Confidence            34677889999999999999999999999999999999999998889997531                37999988762


Q ss_pred             CCCCHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcC
Q 046788           85 GEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCN  139 (163)
Q Consensus        85 ~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~  139 (163)
                      .  .+..+|+.|                 -...||-.+|+-..-+.+|.|+..-.
T Consensus       157 ~--~~~~~v~~W-----------------l~S~gH~~nll~~~~~~~Gv~~~~~~  192 (207)
T COG2340         157 D--PPEAAVDGW-----------------LNSPGHRKNLLNPAYTEIGVGVAYDA  192 (207)
T ss_pred             C--chHHHHHHh-----------------cCChhhhhhccCcchhheeEEEEecC
Confidence            2  227999999                 33568889999999999999998744

>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens

Probab=89.18  E-value=2.7  Score=31.70  Aligned_cols=133  Identities=17%  Similarity=0.192  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHhhCCCCCcc-----------c-CHHHHHHHHHHHHhhcCCCCCcCC-CCC-----------CccceEE
Q 046788           25 PEDYLKAHNEARASVGVGPMS-----------W-DYKLADYSHKHAQKLKGNCNLKKP-QVS-----------KYSETIA   80 (163)
Q Consensus        25 ~~~iL~~hN~~R~~~~m~~L~-----------W-d~~La~~Aq~~a~~~~~~C~~~~~-~~~-----------~~Geni~   80 (163)
                      .-++|+..|..|...|++...           . +++| .....|..    -|..... ..+           .-| +.+
T Consensus        35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~----iC~~l~pt~~~~~~~~~~~~pf~~G-TyA  108 (254)
T PF11054_consen   35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKK----ICEHLIPTQAEPAAEASKLNPFKDG-TYA  108 (254)
T ss_pred             chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHH----HHHHhcCCCCcchhhccccCcCCCC-ceE
Confidence            557999999999999954221           2 2333 44556666    5643222 111           112 222


Q ss_pred             e--ccCCCCCHHHHHHHHHcCCCCCCCCCCcccCC-----CCccchHHHHHHHhcCe-eeEEEEEcCCC-----------
Q 046788           81 W--SSQGEITAAEFVKMCMDGKPLYDYNSNTCALN-----GTKCAIYTQVVWRNSVR-LGCAKERCNNN-----------  141 (163)
Q Consensus        81 ~--~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~-----~~~~~~ftq~vw~~t~~-vGCa~~~c~~~-----------  141 (163)
                      .  ......+..++|+.|-.-.++++--.+.....     +...-.|.-|-..++.- .-|.+..|+..           
T Consensus       109 f~~lt~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~  188 (254)
T PF11054_consen  109 FKSLTDEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQ  188 (254)
T ss_pred             eeeccCCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCccccc
Confidence            2  12345689999999987777765422222210     22234455555555554 56999999641           


Q ss_pred             -------CeeEEEEEEecCCCC-CCCCCCC
Q 046788          142 -------GTLNFVICNYDPRGN-VFGQRPY  163 (163)
Q Consensus       142 -------~~~~~~vC~Y~p~gN-~~g~~~Y  163 (163)
                             ++.+-++|.=.|..- ..|..||
T Consensus       189 ~d~~~~~~~gyAliCkT~P~Al~~~~saPF  218 (254)
T PF11054_consen  189 GDSDSESKTGYALICKTMPAALASDGSAPF  218 (254)
T ss_pred             CCCcccccceEEEEEecCchhhcCCCCCCC
Confidence                   224579999999765 5677665

One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=82.50  E-value=1.1  Score=28.82  Aligned_cols=12  Identities=25%  Similarity=0.207  Sum_probs=6.5

Q ss_pred             CcchhHHHHHHH
Q 046788            1 MPSTSAIFCLLA   12 (163)
Q Consensus         1 m~~~~~~~~ll~   12 (163)
                      |.|..+|||.|+
T Consensus         1 MaSK~~llL~l~   12 (95)
T PF07172_consen    1 MASKAFLLLGLL   12 (95)
T ss_pred             CchhHHHHHHHH
Confidence            667555544444

Some of them may be involved in resistance to environmental stress [].

>PF15240 Pro-rich: Proline-rich

Probab=81.69  E-value=0.65  Score=33.38  Aligned_cols=21  Identities=38%  Similarity=0.540  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHhhhccCCCchH
Q 046788            6 AIFCLLALATIHLSSAHNKPE   26 (163)
Q Consensus         6 ~~~~ll~~~~~~~~~~~~~~~   26 (163)
                      |||+||+++|++.++|+...+
T Consensus         1 MLlVLLSvALLALSSAQ~~dE   21 (179)
T PF15240_consen    1 MLLVLLSVALLALSSAQSTDE   21 (179)
T ss_pred             ChhHHHHHHHHHhhhcccccc
Confidence            356666666666666665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
1cfe_A	135	P14a, Nmr, 20 Structures Length = 135		4e-32
1u53_A	196	Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein F		2e-06
1smb_A	154	Crystal Structure Of Golgi-Associated Pr-1 Protein		4e-06
3q2r_A	205	Crystal Structure Of Sglipr1 Soaked With Zinc Chlor		4e-06
4aiw_A	154	Gapr-1 With Bound Inositol Hexakisphosphate Length		7e-06
2vzn_A	218	Crystal Structure Of The Major Allergen From Fire A		2e-05
1wvr_A	221	Crystal Structure Of A Crisp Family Ca-Channel Bloc		8e-05
1rc9_A	221	Crystal Structure Of Stecrisp, A Member Of Crisp Fa		9e-05
3nt8_A	424	Crystal Structure Of Na-Asp-1 Length = 424		8e-04
1xta_A	221	Crystal Structure Of Natrin, A Snake Venom Crisp Fr		9e-04

>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures Length = 135

Iteration: 1
 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 86/141 (60%), Gaps = 7/141 (4%)
Query: 22  HNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAW 81
            N P+DYL  HN+ARA VGVGPMSWD  LA  +  +A    G+CNL     S   E +A 
Sbjct: 1   QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLA- 56
Query: 82  SSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN 141
              G+ T    V++ +  +P Y+Y +N C + G KC  YTQVVWRNSVRLGC + RCNN 
Sbjct: 57  KGGGDFTGRAAVQLWVSERPSYNYATNQC-VGGKKCRHYTQVVWRNSVRLGCGRARCNNG 115
Query: 142 GTLNFVICNYDPRGNVFGQRP 162
               F+ CNYDP GN  GQRP
Sbjct: 116 --WWFISCNYDPVGNWIGQRP 134

>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The Nematode Parasite Necator Americanus And A Vaccine Antigen For Human Hookworm Infection Length = 196

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           YTQ+VW+ +V+LGC  E C+N   + +V+C Y P GN+ G+  Y
Sbjct: 135 YTQMVWQETVKLGCYVEACSN---MCYVVCQYGPAGNMMGKDIY 175

>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein Length = 154

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 27  DYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLK-KPQVSK--YSETIAWSS 83
           + LKAHNE R   GV P+     L   + ++++ L     LK  P+ S+    E +AW+S
Sbjct: 12  EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXGENLAWAS 71
Query: 84  QGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGT 143
             + T  E          + +YN        +    +T +VW+N+ ++G  K   ++  +
Sbjct: 72  YDQ-TGKEVADRWYS--EIKNYNFQQPGFT-SGTGHFTAMVWKNTKKMGVGKASASDGSS 127
Query: 144 LNFVICNYDPRGNV 157
             FV+  Y P GNV
Sbjct: 128 --FVVARYFPAGNV 139

>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride Length = 205

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 26  EDYLKAHNEARASVGVGP-----MSWDYKLADYSHKHAQ--KLKGNCNLKKPQ-----VS 73
           +D ++ HN+ R+ V         M+WD  LA  +   A   +   N  LK P       +
Sbjct: 20  KDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFT 79
Query: 74  KYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGC 133
              E I   S    + +  +    D    YD+ +  C      C  YTQVVW +S ++GC
Sbjct: 80  SLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK---KVCGHYTQVVWADSYKVGC 136
Query: 134 AKERCNNNGTLNFV------ICNYDPRGN 156
           A + C      + +      ICNY P GN
Sbjct: 137 AVQFCPKVSGFDALSNGAHFICNYGPGGN 165

>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate Length = 154

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 27  DYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLK-KPQVSKYS--ETIAWSS 83
           + LKAHNE R   GV P+     L   + ++++ L     LK  P+ S+    E +AW+S
Sbjct: 12  EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS 71
Query: 84  QGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGT 143
             + T  E          + +YN        +    +T +VW+N+ ++G  K   ++  +
Sbjct: 72  YDQ-TGKEVADRWYS--EIKNYNFQQPGFT-SGTGHFTAMVWKNTKKMGVGKASASDGSS 127
Query: 144 LNFVICNYDPRGNV 157
             FV+  Y P GNV
Sbjct: 128 --FVVARYFPAGNV 139

>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant Venom, Sol I 3 Length = 218

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query: 18  LSSAHNKPEDYLKAHNEARASVGVGP-------MSWDYKLADYSHKHAQKLK---GNC-N 66
           + + HN+    + +  E R + G  P       ++WD +LA  + + A +       C N
Sbjct: 46  IVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDACRN 105
Query: 67  LKKPQVSKYSETIAWSSQGEITAAEFVKMC------MDGKPLYDYNSNTCALNGTKCAIY 120
           +++  V +     + S + + T  E + +        D + +  + S+   L   K   Y
Sbjct: 106 VERFAVGQNIAATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNIL--MKVGHY 163
Query: 121 TQVVWRNSVRLGCAKE--RCNNNGTLNFVICNYDPRGNVFGQRPY 163
           TQ+VW  + ++GC +   +  +N T ++++CNY P GNV G   Y
Sbjct: 164 TQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIY 208

>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker Derived From Snake Venom Length = 221

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ 160
           YTQ+VW  S R GCA   C ++    F +C Y P GN+ G+
Sbjct: 116 YTQIVWYKSYRAGCAAAYCPSSKYSYFYVCQYCPAGNIIGK 156

>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family From Trimeresurus Stejnegeri Refined At 1.6 Angstroms Resolution: Structual Relationship Of The Two Domains Length = 221

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ 160
           YTQ+VW  S R+GCA   C ++    F +C Y P GN  G+
Sbjct: 116 YTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGK 156

>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1 Length = 424

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           YTQ+ W  + +LGCA   CN+     F +C Y P GN  G   Y
Sbjct: 359 YTQMAWDTTYKLGCAVVFCND---FTFGVCQYGPGGNYMGHVIY 399

>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From Taiwan Cobra (Naja Atra) Length = 221

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 114 GTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ 160
           G+    YTQ+VW  + R GCA   C ++    F +C Y P GN  G+
Sbjct: 110 GSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGK 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	1e-49
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	5e-46
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	2e-33
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	3e-33
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	8e-33
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	3e-32
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	1e-31
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	4e-28
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	5e-25
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	2e-23
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	1e-13
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	1e-09

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1 Length = 135

 Score =  155 bits (393), Expect = 1e-49
 Identities = 71/142 (50%), Positives = 86/142 (60%), Gaps = 7/142 (4%)

Query: 22  HNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAW 81
            N P+DYL  HN+ARA VGVGPMSWD  LA  +  +A    G+CNL     S   E +A 
Sbjct: 1   QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLAK 57

Query: 82  SSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN 141
              G+ T    V++ +  +P Y+Y +N C   G KC  YTQVVWRNSVRLGC + RCNN 
Sbjct: 58  GG-GDFTGRAAVQLWVSERPSYNYATNQCV-GGKKCRHYTQVVWRNSVRLGCGRARCNNG 115

Query: 142 GTLNFVICNYDPRGNVFGQRPY 163
               F+ CNYDP GN  GQRPY
Sbjct: 116 WW--FISCNYDPVGNWIGQRPY 135

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A* Length = 154

 Score =  146 bits (371), Expect = 5e-46
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 9/148 (6%)

Query: 19  SSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLK---KPQVSKY 75
           S++     + LKAHNE R   GV P+     L   + ++++ L     LK   +    + 
Sbjct: 4   SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQC 63

Query: 76  SETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAK 135
            E +AW+S  + T  E           Y++         +    +T +VW+N+ ++G  K
Sbjct: 64  GENLAWAS-YDQTGKEVADRWYSEIKNYNFQQPGFT---SGTGHFTAMVWKNTKKMGVGK 119

Query: 136 ERCNNNGTLNFVICNYDPRGNVFGQRPY 163
              ++  +  FV+  Y P GNV  +  +
Sbjct: 120 ASASDGSS--FVVARYFPAGNVVNEGFF 145

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1 Length = 209

 Score =  116 bits (292), Expect = 2e-33
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 22/163 (13%)

Query: 23  NKPEDYLKAHNEARASVGVG-----------------PMSWDYKLADYSHKHAQKLKGNC 65
            + +D LK HN+ R  +  G                  + W+ +LA  +   A + +   
Sbjct: 44  QEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGH 103

Query: 66  NL-KKPQVSKYSETIAWSS---QGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYT 121
           +  +     +  + +A +           + VKM  D    Y+        +  K   YT
Sbjct: 104 DTCRDVAKYQVGQNVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYT 163

Query: 122 QVVWRNSVRLGCAKERCNNNGTLN-FVICNYDPRGNVFGQRPY 163
           Q+VW N+  +GC   +         +++CNY P GN   +  Y
Sbjct: 164 QMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A Length = 205

 Score =  116 bits (291), Expect = 3e-33
 Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 15  TIHLSSAHNKPEDYLKAHNEARASVGVGP-----MSWDYKLADYSHKHAQKLK------- 62
            +      +  +D ++ HN+ R+ V         M+WD  LA  +   A   +       
Sbjct: 9   ILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRL 68

Query: 63  GNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQ 122
              +   P  +   E I   S    + +  +    D    YD+ +  C      C  YTQ
Sbjct: 69  KPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRIC---KKVCGHYTQ 125

Query: 123 VVWRNSVRLGCAKERCNNNGTLN------FVICNYDPRGNVFGQRPY 163
           VVW +S ++GCA + C      +        ICNY P GN     PY
Sbjct: 126 VVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWPY 171

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A Length = 221

 Score =  115 bits (288), Expect = 8e-33
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 12/157 (7%)

Query: 17  HLSSAHNKPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLK---GNCNLK 68
             +    K ++ +  HN  R  V      +  M W  + A  + + A          NL+
Sbjct: 7   ESTRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLR 66

Query: 69  KPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNS 128
             +  +  E+I  SS    T  E + +  D    + Y        G+    YTQ+VW  +
Sbjct: 67  VLEGIQCGESIYMSS-NARTWTEIIHLWHDEYKNFVYGVGASP-PGSVTGHYTQIVWYQT 124

Query: 129 VRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ--RPY 163
            R GCA   C ++    F +C Y P GN  G+   PY
Sbjct: 125 YRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPY 161

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A Length = 210

 Score =  113 bits (284), Expect = 3e-32
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 14/154 (9%)

Query: 20  SAHNKPEDYLKAHNEARASV-----GVGPMSWDYKLADYSHKHAQKLK---GNCNLKKPQ 71
           +  N  ++ +  HN  R SV      +  M W+   A  + + A +        N +   
Sbjct: 1   NKKNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADRCTFAHSPPNTRTVG 60

Query: 72  VSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRL 131
             +  E I  SS      +  V+   D    + Y        G+    YTQVVW  S  +
Sbjct: 61  KLRCGENIFMSS-QPFPWSGVVQAWYDEIKNFVYGIGAKP-PGSVIGHYTQVVWYKSHLI 118

Query: 132 GCAKERCNNNGTLNFVICNYDPRGNVFGQ--RPY 163
           GCA  +C+++      +C Y P GN+ G    PY
Sbjct: 119 GCASAKCSSSKY--LYVCQYCPAGNIRGSIATPY 150

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus} Length = 196

 Score =  111 bits (278), Expect = 1e-31
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 28/165 (16%)

Query: 23  NKPEDYLKAHNEARASVGVG-----------------PMSWDYKLADYSHKHAQKLKGNC 65
              + +L+ HN  R+SV +G                  M++D ++   +  +A++     
Sbjct: 15  EARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVFKH 74

Query: 66  NLKKPQVSKYSETIAWSSQG----EITAAEFVKMCMDGKPLYDYNSNTC---ALNGTKCA 118
           + +  Q     E I  SS         A +  K             N      L      
Sbjct: 75  S-QPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVG 133

Query: 119 IYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
            YTQ+VW+ +V+LGC  E C+N     +V+C Y P GN+ G+  Y
Sbjct: 134 HYTQMVWQETVKLGCYVEACSNM---CYVVCQYGPAGNMMGKDIY 175

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta} Length = 218

 Score =  103 bits (257), Expect = 4e-28
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 27/165 (16%)

Query: 26  EDYLKAHNEARASVGVG-----------------PMSWDYKLADYSHKHAQKLKGNCNL- 67
           +  +  HNE R  V  G                  ++WD +LA  + + A +     +  
Sbjct: 44  DAIVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDAC 103

Query: 68  KKPQVSKYSETIAWSS---QGEITAAEFVKMCMDGKPLYDYNSNTCAL----NGTKCAIY 120
           +  +     + IA +S   + + T  E + +  +    +D    +          K   Y
Sbjct: 104 RNVERFAVGQNIAATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHY 163

Query: 121 TQVVWRNSVRLGCAKERCNNNGTLN--FVICNYDPRGNVFGQRPY 163
           TQ+VW  + ++GC +            +++CNY P GNV G   Y
Sbjct: 164 TQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIY 208

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score = 98.3 bits (244), Expect = 5e-25
 Identities = 36/172 (20%), Positives = 56/172 (32%), Gaps = 37/172 (21%)

Query: 22  HNKPEDYLKAHNEARASVGVG-----------------PMSWDYKLADYSHKHAQKLKGN 64
            +  + +L  HNE R+SV  G                  M +D ++   + +H  K    
Sbjct: 235 DSVRDTFLSVHNEFRSSVARGLEPDALGGNAPKAAKMLKMVYDCEVEASAIRHGNK---- 290

Query: 65  CNLK---KPQVSKYSETIAWSSQGEITAAEFVKMCMDG----KPLYDYNSNTCAL----- 112
           C  +           E I  +S  +    +  K            Y    +         
Sbjct: 291 CVYQHSHGEDRPGLGENIYKTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWN 350

Query: 113 -NGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
               +   YTQ+ W  + +LGCA   CN+     F +C Y P GN  G   Y
Sbjct: 351 RPNMQIGHYTQMAWDTTYKLGCAVVFCNDF---TFGVCQYGPGGNYMGHVIY 399

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score = 94.0 bits (233), Expect = 2e-23
 Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 30/160 (18%)

Query: 26  EDYLKAHNEARASVGVGP----------------MSWDYKLADYSHKHAQKLKGNCNLKK 69
           + +L  HN AR  V  G                 +SWD  +        Q     C    
Sbjct: 38  QAFLDFHNNARRRVAKGLEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQS----CPSGF 93

Query: 70  PQVSKYSETIAWSS------QGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQV 123
             +   ++     S         +     +     G        +     G     ++ +
Sbjct: 94  AGIQGVAQNTMSWSSSGGYPDPSVKIEPTLSGWWSGAKKNGVGPDNKY-TGGGLFAFSNM 152

Query: 124 VWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY 163
           V+  + +LGCA + C        V C Y+  G +  Q  +
Sbjct: 153 VYSETTKLGCAYKVCGTK---LAVSCIYNGVGYITNQPMW 189

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C* Length = 233

 Score = 65.1 bits (158), Expect = 1e-13
 Identities = 22/160 (13%), Positives = 45/160 (28%), Gaps = 23/160 (14%)

Query: 26  EDYLKAHNEARASVGVG-----------PMSWDYKLADYSHKHAQKLKGNCN-LKKPQVS 73
            + L   N+ R  V  G            + WD +LA  + +H +   G  +  +  +  
Sbjct: 42  NEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTKGCVGETHACRNTERF 101

Query: 74  KYSETIAWSSQGEI--TAAEFVKMCMDGKPLYDYNSNTCALN-------GTKCAIYTQVV 124
                + +   G+      E +   +    L  +N     +                  +
Sbjct: 102 WLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQKHNITREIIENYRENGPNGDVKELALAI 161

Query: 125 WRNSVRLGCAKERCNNNGTLNF-VICNYDPRGNVFGQRPY 163
                 +GC      +       + CN+    N  G+  Y
Sbjct: 162 SDRVTAVGCGLTTWEDGAKARALLTCNFSS-QNTRGRPVY 200

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A Length = 206

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 22/153 (14%), Positives = 39/153 (25%), Gaps = 37/153 (24%)

Query: 26  EDYLKAHNEARASVGVG------------PMSWDYKLADYSHKHAQKLKGNCNLKKPQVS 73
           E     HN  R  +  G             + +D  L + + K  +              
Sbjct: 20  EAIDTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLEEEARKEIK-----LPGYADLHH 74

Query: 74  KYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGC 133
           +     +   +G                L +      A   +      QVV+  + R GC
Sbjct: 75  RGVTRFSGDYEG-----------SAISALKEILETFSADKNS----MRQVVYPKATRFGC 119

Query: 134 AKERCNNNGTLN---FVICNYDPRGNVFGQRPY 163
           +     N  T       +C YD +        +
Sbjct: 120 SGRLRRNKKTGMRRMDWVCVYDKKPK--DGESF 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	100.0
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	100.0
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	100.0
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	100.0
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	100.0
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	100.0
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	100.0
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	100.0
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	100.0
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	100.0
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	100.0
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	100.0
4ifa_A	339	Extracellular protein containing A SCP domain; vac	99.7
4h0a_A	323	Uncharacterized protein; CAP protein family, cyste	99.44
3plv_C	21	66 kDa U4/U6.U5 small nuclear ribonucleoprotein C;	84.89

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1

Probab=100.00  E-value=5.4e-49  Score=271.18  Aligned_cols=135  Identities=52%  Similarity=0.972  Sum_probs=126.5

Q ss_pred             CCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccCCCCCHHHHHHHHHcCCC
Q 046788           22 HNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKP  101 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~  101 (163)
                      ++++++||+.||.+|++++|++|+||++|+..||.||++|+.+|.+.|+++   ||||++++ ...++.++|+.|++|..
T Consensus         1 ~~~~~~iL~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~a~~c~~~hs~~---GENla~~~-~~~~~~~~v~~W~~E~~   76 (135)
T 1cfe_A            1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA---GENLAKGG-GDFTGRAAVQLWVSERP   76 (135)
T ss_dssp             CCSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTTTCCSCSCSS---SBCCEECS-SSCCHHHHHHHHHTTGG
T ss_pred             CcHHHHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHHHhcCCCcccCCC---CeEEEEec-CCCCHHHHHHHHHhHHh
Confidence            367899999999999999999999999999999999999999999999875   99999876 55789999999999999


Q ss_pred             CCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCCCCCCC
Q 046788          102 LYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY  163 (163)
Q Consensus       102 ~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~~~Y  163 (163)
                      +|+|..+.+.. +..+||||||||++|++||||++.|+++.+  ++||+|+|+||+.|++||
T Consensus        77 ~y~~~~~~~~~-~~~~gHfTQ~vW~~t~~vGCa~~~c~~~~~--~~VC~Y~p~GN~~g~~pY  135 (135)
T 1cfe_A           77 SYNYATNQCVG-GKKCRHYTQVVWRNSVRLGCGRARCNNGWW--FISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             GEEGGGTEECS-SSCCSSHHHHHCTTCCEEEEEEEECTTSSE--EEEEECSSCCSCTTSCCC
T ss_pred             hCCCCCCCcCC-CCcccceeeeEEccCcEEeEEEEEeCCCCE--EEEEEEeCCCCCCCCCCC
Confidence            99999988876 678999999999999999999999988766  999999999999999999

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A*

Probab=100.00  E-value=1.6e-48  Score=274.33  Aligned_cols=139  Identities=25%  Similarity=0.428  Sum_probs=126.7

Q ss_pred             ccCCCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCC---CCCccceEEeccCCCCCHHHHHHH
Q 046788           19 SSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQ---VSKYSETIAWSSQGEITAAEFVKM   95 (163)
Q Consensus        19 ~~~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~---~~~~Geni~~~~~~~~~~~~~v~~   95 (163)
                      +.+++++++||+.||.+|++|+++||+||++|+..||.||++++.+|.+.|++   ...+||||++.. ...++.++|+.
T Consensus         4 s~~~~f~~~iL~~HN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~~~~~hs~~~~~~~~GeNl~~~~-~~~~~~~~v~~   82 (154)
T 4aiw_A            4 SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS-YDQTGKEVADR   82 (154)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCCCCHHHHTTSSEEEEEEES-SCCCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhhhcccccccccCCCCCCCeeeEecC-CCCCHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999974   236899999876 44688999999


Q ss_pred             HHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCCCCCCC
Q 046788           96 CMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY  163 (163)
Q Consensus        96 W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~~~Y  163 (163)
                      ||+|..+|+|..+.+..   .+||||||||++|++||||++.|+++..  ++||+|+|+||+.|+.||
T Consensus        83 W~~E~~~y~~~~~~~~~---~~gHfTQ~VW~~t~~vGCg~a~c~~~~~--~vVC~Y~P~GN~~g~~~y  145 (154)
T 4aiw_A           83 WYSEIKNYNFQQPGFTS---GTGHFTAMVWKNTKKMGVGKASASDGSS--FVVARYFPAGNVVNEGFF  145 (154)
T ss_dssp             HHGGGGGCCTTSCSCCT---TTHHHHHHHCTTCCEEEEEEEECTTSCE--EEEEEEESCCCCCSTTHH
T ss_pred             HHHHhhhcccCCCCcCC---CcCCeeeeehhhhceeeeEEEEcCCCCE--EEEEEEeCCCccCCccch
Confidence            99999999999988865   6999999999999999999999999877  999999999999999776

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A

Probab=100.00  E-value=8.4e-42  Score=251.03  Aligned_cols=134  Identities=29%  Similarity=0.529  Sum_probs=118.9

Q ss_pred             CCchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC-------CccceEEeccCCCCCH
Q 046788           22 HNKPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS-------KYSETIAWSSQGEITA   89 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~-------~~Geni~~~~~~~~~~   89 (163)
                      ++++++||+.||.+|++|+     |++|+||++||..||.||+    +|.+.|++..       .+||||++++. ..++
T Consensus         3 ~~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~----~C~~~Hs~~~~r~~~~~~~GENl~~~~~-~~~~   77 (210)
T 2ddb_A            3 KNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWAD----RCTFAHSPPNTRTVGKLRCGENIFMSSQ-PFPW   77 (210)
T ss_dssp             -CHHHHHHHHHHHHHTTCSSCBSSCBCCEECHHHHHHHHHHHT----TTCCSCCCGGGSEETTEECEEEEEEESS-CCCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCccccCcccccCHHHHHHHHHHHh----cCCCCCCCccccccCCCCCcceEEEEcC-CCCH
Confidence            4678999999999999997     7799999999999999999    9999998532       48999998763 3568


Q ss_pred             HHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCCCC--CCC
Q 046788           90 AEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ--RPY  163 (163)
Q Consensus        90 ~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~--~~Y  163 (163)
                      .++|+.||+|..+|+|..+.+.. +..+||||||||+++++||||++.|+.+.+  ++||+|+|+||+.|+  +||
T Consensus        78 ~~av~~W~~E~~~y~~~~~~~~~-~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~--~~VC~Y~P~GN~~g~~~~pY  150 (210)
T 2ddb_A           78 SGVVQAWYDEIKNFVYGIGAKPP-GSVIGHYTQVVWYKSHLIGCASAKCSSSKY--LYVCQYCPAGNIRGSIATPY  150 (210)
T ss_dssp             HHHHHHHHGGGGGEETTTEESST-TSCCHHHHHHTCTTCCEEEEEEEEEETTEE--EEEEEEESCSSSTTCTTCSS
T ss_pred             HHHHHHHHHHhhhCCCCCCCCCC-CCcccchhhhhhhhccEeeEEEEEcCCCCE--EEEEEeeCCCCCCCCccCCC
Confidence            99999999999999998866655 668999999999999999999999988744  899999999999999  898

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1

Probab=100.00  E-value=7.7e-42  Score=251.26  Aligned_cols=138  Identities=24%  Similarity=0.439  Sum_probs=116.3

Q ss_pred             CCchHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCC-----CCccceE
Q 046788           22 HNKPEDYLKAHNEARASVG-----------------VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQV-----SKYSETI   79 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----~~~Geni   79 (163)
                      +++++.||+.||.+|++|+                 |++|+||++||..||.||+    +|.+.|+..     ..+||||
T Consensus        43 ~~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A~----~C~~~h~~~~~~~~~~~GeNl  118 (209)
T 1qnx_A           43 KQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWAN----QCQYGHDTCRDVAKYQVGQNV  118 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCSTTCCCCCBSSCCCCEECHHHHHHHHHHHT----TCCCSCCSCCCCSSSCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccccCCCCCCCccccccccccCHHHHHHHHHHHh----cCcccCCCccCCCCCCCccEE
Confidence            3568899999999999983                 7899999999999999999    999999752     2489999


Q ss_pred             EeccCC---CCCHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCe-eEEEEEEecCCC
Q 046788           80 AWSSQG---EITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGT-LNFVICNYDPRG  155 (163)
Q Consensus        80 ~~~~~~---~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~-~~~~vC~Y~p~g  155 (163)
                      ++....   ...+.++|+.||+|..+|++..+.....+..+||||||||++|++||||++.|..++. ..++||+|+|+|
T Consensus       119 ~~~~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~P~G  198 (209)
T 1qnx_A          119 ALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSG  198 (209)
T ss_dssp             EEEEESSSCCCCHHHHHHHHHGGGGGCCTTSCGGGSCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESCC
T ss_pred             EEecccCCCcccHHHHHHHHHHhhhhcCCccCCCCCCCCcccchhhhhhhcCcEeeeEEEEEeCCCceeEEEEEEeCCCC
Confidence            986533   2468899999999999999986422211246899999999999999999999986542 358999999999


Q ss_pred             CCCCCCCC
Q 046788          156 NVFGQRPY  163 (163)
Q Consensus       156 N~~g~~~Y  163 (163)
                      |+.|++||
T Consensus       199 N~~g~~~Y  206 (209)
T 1qnx_A          199 NFKNEELY  206 (209)
T ss_dssp             CCTTSCSS
T ss_pred             CCCCCCCC
Confidence            99999998

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A

Probab=100.00  E-value=1.3e-41  Score=251.72  Aligned_cols=137  Identities=28%  Similarity=0.516  Sum_probs=120.2

Q ss_pred             CCCchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC-------CccceEEeccCCCCC
Q 046788           21 AHNKPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS-------KYSETIAWSSQGEIT   88 (163)
Q Consensus        21 ~~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~-------~~Geni~~~~~~~~~   88 (163)
                      .++++++||+.||.+|++|+     |++|+||++||..||.||+    +|.+.|++..       .+||||++... ..+
T Consensus        11 ~~~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~----~C~~~Hs~~~~r~~~~~~~GENl~~~~~-~~~   85 (221)
T 1xta_A           11 RKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWAN----TCSLNHSPDNLRVLEGIQCGESIYMSSN-ART   85 (221)
T ss_dssp             SHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHT----TTCCSCCCGGGCEETTEECEEEEEEESS-CCC
T ss_pred             CHHHHHHHHHHHHHHHHhcCCccccCccCccCHHHHHHHHHHHh----cCCCCCcCccccccCCCCCceEEEeecC-CCC
Confidence            34678999999999999997     7799999999999999999    9999998531       48999998763 346


Q ss_pred             HHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCCCC--CCC
Q 046788           89 AAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ--RPY  163 (163)
Q Consensus        89 ~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~--~~Y  163 (163)
                      +.++|+.||+|..+|+|..+.+.. +..+||||||||+++++||||++.|+.+....++||+|+|+||+.|+  +||
T Consensus        86 ~~~av~~W~~E~~~y~~~~~~~~~-~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~VC~Y~P~GN~~g~~~~pY  161 (221)
T 1xta_A           86 WTEIIHLWHDEYKNFVYGVGASPP-GSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPY  161 (221)
T ss_dssp             HHHHHHHHHGGGGGEETTTEESST-TCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTTTTCSS
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCC-CCchhHHHHHHHHhcCEeeEEEEEcCCCCccEEEEEEEeCCcCCCCCcCCCc
Confidence            899999999999999999876655 66899999999999999999999998763334899999999999999  898

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A

Probab=100.00  E-value=3.9e-41  Score=246.79  Aligned_cols=137  Identities=30%  Similarity=0.527  Sum_probs=119.1

Q ss_pred             ccCCCchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCC-----------CCccceEEec
Q 046788           19 SSAHNKPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQV-----------SKYSETIAWS   82 (163)
Q Consensus        19 ~~~~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------~~~Geni~~~   82 (163)
                      ...++++++||+.||.+|++|+     |.+|+||++||..||.||+    +|.+.|+..           ..+||||+.+
T Consensus        13 ~~~~~f~~~~L~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~----~C~~~h~~~~~~~~~~~~~~~~~GeNl~~~   88 (205)
T 3q2u_A           13 IENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWAS----NCQFSHNTRLKPPHKLHPNFTSLGENIWTG   88 (205)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHT----TCBSSCCTTSSTTCCSSTTCSSCEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCcccCccCccCHHHHHHHHHHHH----hCCCCCCccccccccccCCCCCCceEEEEc
Confidence            3345689999999999999997     7799999999999999999    899888642           3689999887


Q ss_pred             cCCCCCHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCC------CeeEEEEEEecCCCC
Q 046788           83 SQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN------GTLNFVICNYDPRGN  156 (163)
Q Consensus        83 ~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~------~~~~~~vC~Y~p~gN  156 (163)
                      +....++.++|+.||+|..+|+|..+.+..   .+||||||||++|++||||++.|+..      ....++||+|+|+||
T Consensus        89 ~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~---~~gHfTQ~VW~~t~~vGCa~~~c~~~~g~~~~~~~~~~VC~Y~P~GN  165 (205)
T 3q2u_A           89 SVPIFSVSSAITNWYDEIQDYDFKTRICKK---VCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGN  165 (205)
T ss_dssp             ETTTCCHHHHHHHHHGGGGGEETTTTEESS---CCHHHHHHTCTTCCEEEEEEEEESCCBTCSSCCSEEEEEEEEESCCC
T ss_pred             cCCCCCHHHHHHHHHhHHHhcCCCCCCccc---hhHHHHHHHhhcccEeeeEEEEcCCCcCcccccccEEEEEEEECCCC
Confidence            655678999999999999999999887653   79999999999999999999999852      123489999999999


Q ss_pred             CCCCCCC
Q 046788          157 VFGQRPY  163 (163)
Q Consensus       157 ~~g~~~Y  163 (163)
                      + |++||
T Consensus       166 ~-~~~pY  171 (205)
T 3q2u_A          166 Y-PTWPY  171 (205)
T ss_dssp             C-SSCSS
T ss_pred             c-CCCCC
Confidence            8 88888

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}

Probab=100.00  E-value=4e-41  Score=245.17  Aligned_cols=137  Identities=28%  Similarity=0.511  Sum_probs=116.7

Q ss_pred             cCCCchHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhcCCCCCcCCC---CCCccceE
Q 046788           20 SAHNKPEDYLKAHNEARASVG-----------------VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQ---VSKYSETI   79 (163)
Q Consensus        20 ~~~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~---~~~~Geni   79 (163)
                      .++++++.||+.||.+|++|+                 |++|+||++||..||.||+    +|.+.|+.   ...+||||
T Consensus        12 lt~~~~~~iL~~HN~~R~~~a~G~~~~~~g~~~p~A~nM~~L~Wd~~La~~Aq~~A~----~C~~~h~~~~~~~~~GeNl   87 (196)
T 1u53_A           12 MSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAK----QCVFKHSQPNQRKGLGENI   87 (196)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCCBCTTSSBCCCBSSCBCCEECHHHHHHHHHHHT----TCCCCCCCGGGSTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCcccCCCCcCCccccchhcccCHHHHHHHHHHHH----hCccCCCccccCCCCCeEE
Confidence            444678999999999999982                 6699999999999999999    99999984   33689999


Q ss_pred             EeccCCCC----CHHHHHHHHHcCCCCCCCCC-CcccCC--CCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEec
Q 046788           80 AWSSQGEI----TAAEFVKMCMDGKPLYDYNS-NTCALN--GTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYD  152 (163)
Q Consensus        80 ~~~~~~~~----~~~~~v~~W~~e~~~y~~~~-~~~~~~--~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~  152 (163)
                      ++.+....    .+.++|+.||+|..+|++.. +.+...  +..++|||||||+++++||||++.|.+ .+  ++||+|+
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~~~~~ghfTQ~VW~~t~~vGCa~~~c~~-~~--~~VC~Y~  164 (196)
T 1u53_A           88 FMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSN-MC--YVVCQYG  164 (196)
T ss_dssp             EEESCTTCCHHHHHHHHHHHHHTHHHHHCCCSCCBCCHHHHTTTCHHHHHHTCTTCCEEEEEEEECSS-CE--EEEEEEE
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHcCCCcccccCccccCccccchheeeecccCEEeeEEEEeCC-CE--EEEEEeC
Confidence            97653322    36899999999999999987 544311  457999999999999999999999976 44  8999999


Q ss_pred             CCCCCCCCCCC
Q 046788          153 PRGNVFGQRPY  163 (163)
Q Consensus       153 p~gN~~g~~~Y  163 (163)
                      |+||+.|++||
T Consensus       165 p~GN~~g~~~Y  175 (196)
T 1u53_A          165 PAGNMMGKDIY  175 (196)
T ss_dssp             SCCCCTTSBSS
T ss_pred             CCCCCCCCcCC
Confidence            99999999998

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}

Probab=100.00  E-value=7.3e-41  Score=247.48  Aligned_cols=138  Identities=25%  Similarity=0.490  Sum_probs=114.5

Q ss_pred             CCchHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhcCCCCCcCCC-----CCCccceE
Q 046788           22 HNKPEDYLKAHNEARASVG-----------------VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQ-----VSKYSETI   79 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~-----~~~~Geni   79 (163)
                      ++++++||+.||.+|++++                 |++|+||++||..||.||+    +|.+.|+.     ...+||||
T Consensus        40 ~~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A~----~C~~~Hs~c~~~~~~~~GeNl  115 (218)
T 2vzn_A           40 DAEKDAIVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWAN----QCTFEHDACRNVERFAVGQNI  115 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCTTSCCCCBSCCCCCEECHHHHHHHHHHHT----TCCSSCCSCCCCSSSCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCchhhchhccCCHHHHHHHHHHHH----hCCcCCCCCCCCccCCCceEE
Confidence            3568899999999999983                 7899999999999999999    99999986     12489999


Q ss_pred             EeccCC---CCCHHHHHHHHHcCCCCCCCCCC-cccC---CCCccchHHHHHHHhcCeeeEEEEEcCC-C-CeeEEEEEE
Q 046788           80 AWSSQG---EITAAEFVKMCMDGKPLYDYNSN-TCAL---NGTKCAIYTQVVWRNSVRLGCAKERCNN-N-GTLNFVICN  150 (163)
Q Consensus        80 ~~~~~~---~~~~~~~v~~W~~e~~~y~~~~~-~~~~---~~~~~~~ftq~vw~~t~~vGCa~~~c~~-~-~~~~~~vC~  150 (163)
                      ++....   .....++|+.||+|..+|++... .+..   .+..+||||||||++|++||||++.|.. + ....++||+
T Consensus       116 ~~~~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~vVC~  195 (218)
T 2vzn_A          116 AATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCN  195 (218)
T ss_dssp             EEEEECC-CCCCHHHHHHHHHGGGGGCCGGGSSSCCCCHHHHHHHHHHHHHTCTTCCEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEeccCCccchHHHHHHHHHHHHHhcCcccccCCCCCcccCCCcchHHHHHHHhcCEEeEEEEEEeCCCCeEEEEEEEE
Confidence            986533   23577999999999999998742 1111   0246899999999999999999999976 3 334589999


Q ss_pred             ecCCCCCCCCCCC
Q 046788          151 YDPRGNVFGQRPY  163 (163)
Q Consensus       151 Y~p~gN~~g~~~Y  163 (163)
                      |+|+||+.|++||
T Consensus       196 Y~P~GN~~g~~~y  208 (218)
T 2vzn_A          196 YGPAGNVLGAPIY  208 (218)
T ss_dssp             EESCCCCTTSCSS
T ss_pred             ECCCCCCCCCccc
Confidence            9999999999998

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=100.00  E-value=1e-39  Score=262.23  Aligned_cols=133  Identities=20%  Similarity=0.336  Sum_probs=115.9

Q ss_pred             CchHHHHHHHHHHHhhC--C--------------CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccCC-
Q 046788           23 NKPEDYLKAHNEARASV--G--------------VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQG-   85 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~--~--------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~~-   85 (163)
                      +.|+.||+.||.+|+++  |              |++|+||++||..||.||+    +|.+.|+....+|||++..... 
T Consensus        35 ~~~~~il~~HN~~R~~~A~G~~~~~~~~~p~A~nM~~L~Wd~eLa~~Aq~~a~----~C~~~h~~~~~~GeNl~~~~~~~  110 (424)
T 3nt8_A           35 SDRQAFLDFHNNARRRVAKGLEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQ----SCPSGFAGIQGVAQNTMSWSSSG  110 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCBCSSSBCCCEESCBCCEECHHHHHHHHHHCT----TCCSSCCCCTTCEEEEEEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCCCCCcccccCCccccCHHHHHHHHHHHh----hCCCcCCCCCCceeeEEeccccC
Confidence            47889999999999999  2              8899999999999999999    9999999887899999876522 


Q ss_pred             C-----CCHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCCCC
Q 046788           86 E-----ITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ  160 (163)
Q Consensus        86 ~-----~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~  160 (163)
                      .     ..+.++|+.||+|..+|++....... +..++|||||||+++++||||++.|+. .+  ++||+|+|+||+.|+
T Consensus       111 ~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~-~~~~ghfTqmvw~~t~~vGCa~~~c~~-~~--~~VC~Y~p~GN~~g~  186 (424)
T 3nt8_A          111 GYPDPSVKIEPTLSGWWSGAKKNGVGPDNKYT-GGGLFAFSNMVYSETTKLGCAYKVCGT-KL--AVSCIYNGVGYITNQ  186 (424)
T ss_dssp             CCSCGGGGHHHHHHHHHTHHHHHCCCTTCBCC-CTTCHHHHHHHCTTCCEEEEEEEEETT-EE--EEEEEESSCCCSTTC
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHcCCcccccCC-CcchHHHHHHHHHhcCeeceEEEEeCC-cE--EEEEEECCCCCcccc
Confidence            1     13789999999999999998543333 457899999999999999999999986 34  899999999999999


Q ss_pred             CCC
Q 046788          161 RPY  163 (163)
Q Consensus       161 ~~Y  163 (163)
                      +||
T Consensus       187 ~~Y  189 (424)
T 3nt8_A          187 PMW  189 (424)
T ss_dssp             BSS
T ss_pred             ccc
Confidence            998

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*

Probab=100.00  E-value=3.4e-38  Score=235.28  Aligned_cols=136  Identities=15%  Similarity=0.197  Sum_probs=112.1

Q ss_pred             CCchHHHHHHHHHHHhhC-----------CCCCcccCHHHHHHHHHHHHhhcCCCCCcCCC---C---CCccceEEeccC
Q 046788           22 HNKPEDYLKAHNEARASV-----------GVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQ---V---SKYSETIAWSSQ   84 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~-----------~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~---~---~~~Geni~~~~~   84 (163)
                      +++++.||+.||.+|++|           .|++|+||++||..||.||+    +|.+.|+.   .   ..+|||++..+.
T Consensus        38 ~~~~~~il~~HN~~R~~va~G~~~~P~A~nM~~L~Wd~~La~~Aq~~a~----~C~~~h~~c~~~~~~~~~Gen~~~~~~  113 (233)
T 3u3l_C           38 KEHRNEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTK----GCVGETHACRNTERFWLPGQLNFKYSG  113 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTCCCBSSCBCCEECHHHHHHHHHHHT----TCCSCCCCBCCCSSCSSCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCccccCCccEECHHHHHHHHHHHH----hCCCCCCcccccCcCCcCeEEEEEecC
Confidence            457999999999999999           49999999999999999999    99999875   2   158998876543


Q ss_pred             CC-C----CHHHHHHHHHcCCCCCCCCC----CcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCC-eeEEEEEEecCC
Q 046788           85 GE-I----TAAEFVKMCMDGKPLYDYNS----NTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG-TLNFVICNYDPR  154 (163)
Q Consensus        85 ~~-~----~~~~~v~~W~~e~~~y~~~~----~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~-~~~~~vC~Y~p~  154 (163)
                      .. .    .+.++|+.||+|..+|++..    +.... +..+||||||||++|++||||++.|..++ ...++||+|+| 
T Consensus       114 ~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~-~~~~gHfTQmVW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p-  191 (233)
T 3u3l_C          114 DKLPRIKELIDDAVKKGHLQKHNITREIIENYRENGP-NGDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFSS-  191 (233)
T ss_dssp             SSCCCHHHHHHHHHHHHHGGGGTCCHHHHHSCCSCC---CCCHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEESC-
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhhCHHHHhcCCCccc-ccchhhhHHHhhhcCCeeeeEEEEEEcCCeeEEEEEEECCC-
Confidence            22 2    26889999999999998653    11112 45799999999999999999999998653 34589999998 


Q ss_pred             CCCCCCCCC
Q 046788          155 GNVFGQRPY  163 (163)
Q Consensus       155 gN~~g~~~Y  163 (163)
                      ||+.|++||
T Consensus       192 GN~~g~~~Y  200 (233)
T 3u3l_C          192 QNTRGRPVY  200 (233)
T ss_dssp             CCCTTSCSS
T ss_pred             CCCCCCcee
Confidence            899999998

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=100.00  E-value=4.6e-37  Score=246.77  Aligned_cols=136  Identities=26%  Similarity=0.463  Sum_probs=116.4

Q ss_pred             CCCchHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC---CccceEE
Q 046788           21 AHNKPEDYLKAHNEARASVG-----------------VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIA   80 (163)
Q Consensus        21 ~~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~---~~Geni~   80 (163)
                      ++++++.||+.||.+|++|+                 |.+|+||++||..||.||+    +|.+.|+...   .+||||+
T Consensus       234 ~~~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~nM~~L~Wd~~La~~Aq~~a~----~C~~~h~~~~~~~~~GeNl~  309 (424)
T 3nt8_A          234 TDSVRDTFLSVHNEFRSSVARGLEPDALGGNAPKAAKMLKMVYDCEVEASAIRHGN----KCVYQHSHGEDRPGLGENIY  309 (424)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSBCTTSSBCCCBSSCBCCEECHHHHHHHHHHHT----TCCSSCCCTTTSTTCEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCchhceEhHHHHHHHHHHHH----hCcccCCCccccCccceeEE
Confidence            34689999999999999986                 4489999999999999999    9999998643   6999999


Q ss_pred             eccCCCC----CHHHHHHHHHcCCCCCCCCCCc-c-----cCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEE
Q 046788           81 WSSQGEI----TAAEFVKMCMDGKPLYDYNSNT-C-----ALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICN  150 (163)
Q Consensus        81 ~~~~~~~----~~~~~v~~W~~e~~~y~~~~~~-~-----~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~  150 (163)
                      +.+....    .+.++|+.||+|..+|++.... +     ..++..++|||||||++|++||||++.|+.+ +  ++||+
T Consensus       310 ~~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~-~--~~VC~  386 (424)
T 3nt8_A          310 KTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDF-T--FGVCQ  386 (424)
T ss_dssp             EESSTTCCHHHHHHHHHHHHHTHHHHTCCCTTCBCCHHHHTCTTCCCHHHHHHHCTTCCEEEEEEEECSSS-E--EEEEE
T ss_pred             ecccCCCchHHHHHHHHHHHHHHHHhcCCCCCcccccccccCCCCcccchHHHhhhhcceeeeEEEEeCCC-e--EEEEE
Confidence            8764433    4789999999999999987543 1     1114589999999999999999999999875 4  89999


Q ss_pred             ecCCCCCCCCCCC
Q 046788          151 YDPRGNVFGQRPY  163 (163)
Q Consensus       151 Y~p~gN~~g~~~Y  163 (163)
                      |+|+||+.|++||
T Consensus       387 Y~p~GN~~g~~~Y  399 (424)
T 3nt8_A          387 YGPGGNYMGHVIY  399 (424)
T ss_dssp             EESCCCCTTSBSS
T ss_pred             ecCCCCcCCCCCC
Confidence            9999999999998

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A

Probab=100.00  E-value=3.2e-33  Score=203.48  Aligned_cols=118  Identities=15%  Similarity=0.165  Sum_probs=93.5

Q ss_pred             cCCCchHHHHHHHHHHHhhCC------------CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccCC--
Q 046788           20 SAHNKPEDYLKAHNEARASVG------------VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQG--   85 (163)
Q Consensus        20 ~~~~~~~~iL~~hN~~R~~~~------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~~--   85 (163)
                      .++++|+.||+.||.+|++++            |.+|+||++||..||.||+     |. .++..  .||||+..+..  
T Consensus        14 lt~~~~~~il~~HN~~R~~va~G~~~~~p~A~nM~~l~Wd~eLa~~Aq~~A~-----C~-~~~~~--~GeNl~~~sg~~~   85 (206)
T 3s6s_A           14 VDRPFREAIDTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLEEEARKEIK-----LP-GYADL--HHRGVTRFSGDYE   85 (206)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTCSTTSCSCCCCBCCEEEHHHHHHHHHHHH-----ST-THHHH--TTCEEEEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCCCCCcchhhcCcCCchHHHHHHHHHhhc-----CC-CCCCC--CCcEEEEecCCCC
Confidence            345679999999999999974            7789999999999999997     65 33222  39999654321  


Q ss_pred             CCCH--HHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCC---CCeeEEEEEEecCCCCCCCC
Q 046788           86 EITA--AEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN---NGTLNFVICNYDPRGNVFGQ  160 (163)
Q Consensus        86 ~~~~--~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~---~~~~~~~vC~Y~p~gN~~g~  160 (163)
                      ....  .++|+.||+|                .++|||||||++|++||||++.|++   ++...++||+|+|+|  .|+
T Consensus        86 ~~~~~~~~av~~W~~E----------------~~gHfTQmVW~~Tt~VGCa~~~C~~~~~~~~~~~vVCnY~p~G--~g~  147 (206)
T 3s6s_A           86 GSAISALKEILETFSA----------------DKNSMRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKP--KDG  147 (206)
T ss_dssp             SCHHHHHHHHHHHHTT----------------CHHHHHHHHCTTCCEEEEEEEECC-------EEEEEEEESCCC--CTT
T ss_pred             ccchhHHHHHHHHHhh----------------hhhhHHHHHHHhhceeeEEEEEecCcCCCCceEEEEEEeCCCC--CCC
Confidence            2223  4899999999                2799999999999999999999962   222448999999998  899


Q ss_pred             CCC
Q 046788          161 RPY  163 (163)
Q Consensus       161 ~~Y  163 (163)
                      +||
T Consensus       148 ~~Y  150 (206)
T 3s6s_A          148 ESF  150 (206)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            998

>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}

Probab=99.70  E-value=3.3e-17  Score=127.24  Aligned_cols=93  Identities=15%  Similarity=0.174  Sum_probs=83.4

Q ss_pred             chHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCC----------------CccceEEeccCCCC
Q 046788           24 KPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVS----------------KYSETIAWSSQGEI   87 (163)
Q Consensus        24 ~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~----------------~~Geni~~~~~~~~   87 (163)
                      +.+++|++||.+|.++|++||+||..|+..||.||+.|+..|.+.|..+.                .+||||+.+.   .
T Consensus       220 ~e~~vl~lvN~~Ra~~Gl~pL~~d~~L~~aAq~hA~dMa~~~~fsH~~~~G~~~~~R~~~~G~~~~~~GENIA~G~---~  296 (339)
T 4ifa_A          220 NMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSPTLGTLGDRLQRGKVGFQLAGENIAAQH---S  296 (339)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCSSSBTTTBCHHHHHHHTTCCCSEEEEEEEESC---S
T ss_pred             HHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHhhcCCeecCCCCCCCHHHHHHHcCCCcCceeEEEEEeC---C
Confidence            46789999999999999999999999999999999999999999997531                3699999876   4


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEE
Q 046788           88 TAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKE  136 (163)
Q Consensus        88 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~  136 (163)
                      ++.++|+.|++                 ..||+.+|+|.+.++||||+.
T Consensus       297 s~~~av~~Wmn-----------------SpGHr~NIL~~~~t~iGvGv~  328 (339)
T 4ifa_A          297 DGVAALQGWLN-----------------SEGHRKNLLNEQFTGLGVGVY  328 (339)
T ss_dssp             SHHHHHHHHHT-----------------SHHHHHHHTCTTCCEEEEEEE
T ss_pred             CHHHHHHHHhC-----------------CHhHHHHHhCCCCCEEEEEEE
Confidence            78999999963                 468999999999999999997

>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}

Probab=99.44  E-value=2.4e-13  Score=105.26  Aligned_cols=92  Identities=11%  Similarity=0.113  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCC---------------CCccceEEeccCCCCCH
Q 046788           25 PEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQV---------------SKYSETIAWSSQGEITA   89 (163)
Q Consensus        25 ~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~---------------~~~Geni~~~~~~~~~~   89 (163)
                      .+++|+++|.+|..+|++||+||..|+..|+.||..|+......|++.               ...||||+.+.   .++
T Consensus       206 e~~il~liN~~R~~~GL~pL~~d~~L~~aA~~ha~dma~~~~~h~~~~g~~~~~R~~~~g~~~~~~gENIA~g~---~~~  282 (323)
T 4h0a_A          206 LISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYAF---NDV  282 (323)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHTC------CCCHHHHHHHHHHTTCCCSEEEEEEEESC---CSH
T ss_pred             HHHHHHHHHHHHHHcCCcccCccHhHHHHHHHHHHHHhhCCCCCcCCCCCCHHHHHHHcCCCcCeeeeEEecCC---CCH
Confidence            467999999999999999999999999999999999986543333321               13589999876   578


Q ss_pred             HHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEE
Q 046788           90 AEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKE  136 (163)
Q Consensus        90 ~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~  136 (163)
                      .++|+.|++                 ..||..+|+..+.++||+|+.
T Consensus       283 ~~vv~~Wmn-----------------SpgHR~NiL~~~~t~iGvGv~  312 (323)
T 4h0a_A          283 PTLIHSWMN-----------------SDIHRSRLLNSKYDEMGGDVM  312 (323)
T ss_dssp             HHHHHHHHT-----------------SHHHHHHHTCSSCCEEEEEEE
T ss_pred             HHHHHHHHc-----------------CHHHHHHHcCCCCCEEEEEEE
Confidence            999999963                 458999999999999999986

>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}

Probab=84.89  E-value=0.9  Score=20.12  Aligned_cols=17  Identities=35%  Similarity=0.567  Sum_probs=14.4

Q ss_pred             HHHHHHHHhhCCCCCcc
Q 046788           29 LKAHNEARASVGVGPMS   45 (163)
Q Consensus        29 L~~hN~~R~~~~m~~L~   45 (163)
                      ++..|+.|.+.||.|+.
T Consensus         4 iEEtnk~r~~lGLkplp   20 (21)
T 3plv_C            4 IEETNELRASLGLKLIP   20 (26)
T ss_dssp             HHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHcCCCCCC
Confidence            46789999999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1cfea_	135	d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1	1e-33
d1rc9a1	164	d.111.1.1 (A:1-164) Cysteine-rich secretory protei	6e-26
d1smba_	149	d.111.1.1 (A:) Golgi-associated PR-1 protein {Huma	2e-25
d1qnxa_	209	d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jac	9e-24

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]} Length = 135

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

 Score =  113 bits (284), Expect = 1e-33
 Identities = 68/141 (48%), Positives = 83/141 (58%), Gaps = 7/141 (4%)

Query: 23  NKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWS 82
           N P+DYL  HN+ARA VGVGPMSWD  LA  +  +A    G+CNL      +        
Sbjct: 2   NSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGEN----LAK 57

Query: 83  SQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG 142
             G+ T    V++ +  +P Y+Y +N C   G KC  YTQVVWRNSVRLGC + RCNN  
Sbjct: 58  GGGDFTGRAAVQLWVSERPSYNYATNQCV-GGKKCRHYTQVVWRNSVRLGCGRARCNNGW 116

Query: 143 TLNFVICNYDPRGNVFGQRPY 163
              F+ CNYDP GN  GQRPY
Sbjct: 117 W--FISCNYDPVGNWIGQRPY 135

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]} Length = 164

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

 Score = 94.9 bits (235), Expect = 6e-26
 Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 12/148 (8%)

Query: 26  EDYLKAHNEARASVGVGP-----MSWDYKLADYSHKHAQKLKGNCNL---KKPQVSKYSE 77
            + +  HN  R SV         M W  + AD + + A +   + +    +  +  K  E
Sbjct: 16  NEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWAYRCIESHSSYESRVIEGIKCGE 75

Query: 78  TIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKER 137
            I  S    +   + +    D    + Y              YTQ+VW  S R+GCA   
Sbjct: 76  NIYMSP-YPMKWTDIIHAWHDEYKDFKYGVGADP-PNAVTGHYTQIVWYKSYRIGCAAAY 133

Query: 138 CNNNGTLNFVICNYDPRGNVFGQ--RPY 163
           C ++    F +C Y P GN  G+   PY
Sbjct: 134 CPSSPYSYFFVCQYCPAGNFIGKTATPY 161

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (230), Expect = 2e-25
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 19  SSAHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSET 78
           S++     + LKAHNE R   GV P+     L   + ++++ L     LK    S   + 
Sbjct: 1   SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQC 60

Query: 79  IA--WSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKE 136
                 +  + T  E           Y++         +    +T +VW+N+ ++G  K 
Sbjct: 61  GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGF---TSGTGHFTAMVWKNTKKMGVGKA 117

Query: 137 RCNNNGTLNFVICNYDPRGNVFGQRPY 163
             ++  +  FV+  Y P GNV  +  +
Sbjct: 118 SASDGSS--FVVARYFPAGNVVNEGFF 142

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]} Length = 209

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

 Score = 90.3 bits (223), Expect = 9e-24
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 22/160 (13%)

Query: 26  EDYLKAHNEARASVGVG-----------------PMSWDYKLADYSHKHAQKLKGNCNL- 67
           +D LK HN+ R  +  G                  + W+ +LA  +   A + +   +  
Sbjct: 47  QDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTC 106

Query: 68  ---KKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVV 124
               K QV +       ++       + VKM  D    Y+        +  K   YTQ+V
Sbjct: 107 RDVAKYQVGQNVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMV 166

Query: 125 WRNSVRLGCAKERCNNNGTLN-FVICNYDPRGNVFGQRPY 163
           W N+  +GC   +         +++CNY P GN   +  Y
Sbjct: 167 WANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1cfea_	135	Pathogenesis-related protein 1 (PR1) {Tomato (Lyco	100.0
d1smba_	149	Golgi-associated PR-1 protein {Human (Homo sapiens	100.0
d1rc9a1	164	Cysteine-rich secretory protein (SteCRISP) {Chines	100.0
d1qnxa_	209	Insect allergen 5 (AG5) {Yellow jacket (Vespula vu	100.0

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

Probab=100.00  E-value=3.7e-48  Score=265.34  Aligned_cols=135  Identities=52%  Similarity=0.966  Sum_probs=124.3

Q ss_pred             CCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCCCCccceEEeccCCCCCHHHHHHHHHcCCC
Q 046788           22 HNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSSQGEITAAEFVKMCMDGKP  101 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~  101 (163)
                      |++++++|+.||.+|+.++|+||+||++|+..||.||++++..|.+.|+   .+||||+.+. ...++.++|+.||+|..
T Consensus         1 ~~~~q~~l~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~~~~~~~~~~---~~GeNi~~~~-~~~~~~~av~~W~~E~~   76 (135)
T d1cfea_           1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHS---GAGENLAKGG-GDFTGRAAVQLWVSERP   76 (135)
T ss_dssp             CCSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTTTCCSCSC---SSSBCCEECS-SSCCHHHHHHHHHTTGG
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcCEECHHHHHHHHHHHHHHhhCCCcccC---ccccceeccC-CCCCHHHHHHHHHhhcc
Confidence            4678999999999999999999999999999999999988888877776   5799998765 55789999999999999


Q ss_pred             CCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCCCCCCC
Q 046788          102 LYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY  163 (163)
Q Consensus       102 ~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~~~Y  163 (163)
                      +|+|..+.+.. ...++|||||||++|++||||++.|+++++  ++||+|+|+||+.|++||
T Consensus        77 ~y~~~~~~~~~-~~~~ghftQmvW~~t~~vGCa~~~c~~~~~--~vVC~Y~P~GN~~g~~pY  135 (135)
T d1cfea_          77 SYNYATNQCVG-GKKCRHYTQVVWRNSVRLGCGRARCNNGWW--FISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             GEEGGGTEECS-SSCCSSHHHHHCTTCCEEEEEEEECTTSSE--EEEEECSSCCSCTTSCCC
T ss_pred             ccccccccCCC-CcccchhheeeehhheEeeEEEEEECCCCE--EEEEEEeCCCCcCCcCCC
Confidence            99999888776 668999999999999999999999999887  899999999999999999

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-45  Score=252.50  Aligned_cols=137  Identities=25%  Similarity=0.427  Sum_probs=124.9

Q ss_pred             CCCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCCcCCCC---CCccceEEeccCCCCCHHHHHHHHH
Q 046788           21 AHNKPEDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNLKKPQV---SKYSETIAWSSQGEITAAEFVKMCM   97 (163)
Q Consensus        21 ~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~---~~~Geni~~~~~~~~~~~~~v~~W~   97 (163)
                      +++++++||+.||.+|++++++||+||++|+..||.||++|+++|.+.|++.   ..+|||++++. ....+.++|+.|+
T Consensus         3 ~~~f~~~il~~HN~~R~~~g~~pL~wd~~La~~A~~~A~~~a~~~~~~h~~~~~~~~~geni~~~~-~~~~~~~~v~~W~   81 (149)
T d1smba_           3 SKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS-YDQTGKEVADRWY   81 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHCCCCCCHHHHTTSSEEEEEEES-SCCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHhhcccccccccccccccccCceeeecC-CCccHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999999753   36899999776 3457899999999


Q ss_pred             cCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCCCCCCC
Q 046788           98 DGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQRPY  163 (163)
Q Consensus        98 ~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~~~Y  163 (163)
                      +|..+|+|..+.+..   .++|||||||+++++||||++.|+++.+  ++||+|+|+||+.|+.||
T Consensus        82 ~e~~~y~~~~~~~~~---~~ghftqmvw~~t~~vGCg~a~c~~~~~--~~VC~Y~p~GN~~~~~~y  142 (149)
T d1smba_          82 SEIKNYNFQQPGFTS---GTGHFTAMVWKNTKKMGVGKASASDGSS--FVVARYFPAGNVVNEGFF  142 (149)
T ss_dssp             GGGGGCCTTSCCCCG---GGHHHHHHHCTTCCEEEEEEEECTTSCE--EEEEEEESCCCCCSTTHH
T ss_pred             HHHhhcccCCCCccc---ccchhhheecCCceEeeEEEEEcCCCCE--EEEEEeeCCCCcCCcccc
Confidence            999999999988865   7999999999999999999999998877  899999999999999887

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

Probab=100.00  E-value=1.4e-41  Score=239.58  Aligned_cols=137  Identities=27%  Similarity=0.464  Sum_probs=118.8

Q ss_pred             CCCchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCCcCCCC-------CCccceEEeccCCCCC
Q 046788           21 AHNKPEDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQV-------SKYSETIAWSSQGEIT   88 (163)
Q Consensus        21 ~~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-------~~~Geni~~~~~~~~~   88 (163)
                      ..+++++||+.||.+|++++     |++|+||.+|+..||.||+    +|...|+..       ..+|||++... ....
T Consensus        11 ~~~~~~~il~~HN~~R~~~~~~a~~m~~L~Wd~~La~~A~~~a~----~c~~~~~~~~~~~~~~~~~g~n~~~~~-~~~~   85 (164)
T d1rc9a1          11 KPEIQNEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWAY----RCIESHSSYESRVIEGIKCGENIYMSP-YPMK   85 (164)
T ss_dssp             SHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHT----TTCCSCCCGGGGEETTEECEEEEEEES-SCCC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCcccccccccCHHHHHHHHHHHH----HHhhccCCcccccccccccceEEEEec-CCCC
Confidence            34689999999999999998     6679999999999999999    888777542       26789998655 4467


Q ss_pred             HHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCCeeEEEEEEecCCCCCCCC--CCC
Q 046788           89 AAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ--RPY  163 (163)
Q Consensus        89 ~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~--~~Y  163 (163)
                      +.++|+.||+|..+|++..+.+.. +..++|||||||+++++||||++.|.++....++||+|+|+||+.||  .||
T Consensus        86 ~~~~v~~W~~E~~~~~~~~~~~~~-~~~~ghftqmvW~~t~~vGCa~~~c~~~~~~~~vVC~Y~P~GN~~g~~~~~Y  161 (164)
T d1rc9a1          86 WTDIIHAWHDEYKDFKYGVGADPP-NAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGKTATPY  161 (164)
T ss_dssp             HHHHHHHHHGGGGGEETTTEESST-TCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTCTTCSS
T ss_pred             HHHHHHHHhhhhheeecCCCCCCC-cchhhHHHHHhhhcccEEeEEEEEeCCCCceEEEEEEEcCCCccCCCcCCCc
Confidence            899999999999999999877766 66799999999999999999999998875445899999999999998  567

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

Probab=100.00  E-value=8.3e-40  Score=238.56  Aligned_cols=139  Identities=24%  Similarity=0.441  Sum_probs=116.9

Q ss_pred             CCCchHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhcCCCCCcCCC-----CCCccce
Q 046788           21 AHNKPEDYLKAHNEARASVG-----------------VGPMSWDYKLADYSHKHAQKLKGNCNLKKPQ-----VSKYSET   78 (163)
Q Consensus        21 ~~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~-----~~~~Gen   78 (163)
                      ++++|++||+.||.+|++++                 |.+|+||++||..||.||+    +|...|+.     ...+|||
T Consensus        42 t~~~r~~iL~~HN~~R~~vA~G~~~~~~~~~~P~A~~M~~L~Wd~eLa~~A~~~a~----~C~~~~~~~~~~~~~~~Gen  117 (209)
T d1qnxa_          42 TKQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWAN----QCQYGHDTCRDVAKYQVGQN  117 (209)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCCCSTTCCCCCBSSCCCCEECHHHHHHHHHHHT----TCCCSCCSCCCCSSSCCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHhcccccccccCCCCccccCccceECHHHHHHHHHHHh----hcccCCCcccCCCCCCCcce
Confidence            34589999999999999862                 7789999999999999999    88887753     2257999


Q ss_pred             EEeccCC---CCCHHHHHHHHHcCCCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEcCCCC-eeEEEEEEecCC
Q 046788           79 IAWSSQG---EITAAEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG-TLNFVICNYDPR  154 (163)
Q Consensus        79 i~~~~~~---~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~-~~~~~vC~Y~p~  154 (163)
                      ++.....   ...+.++|+.|++|..+|++..+.....+..++|||||||+++++||||++.|..+. ...++||+|+|+
T Consensus       118 ~~~~~~~~~~~~~~~~~v~~W~~E~~~~~~~~~~~~~~~~~~ghftQmvw~~t~~VGCa~~~c~~~~~~~~~vVC~Y~p~  197 (209)
T d1qnxa_         118 VALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPS  197 (209)
T ss_dssp             EEEEEESSSCCCCHHHHHHHHHGGGGGCCTTSCGGGSCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred             eeecccCCcCcccHHHHHHHHHHHhhhcCCCcccccCCccccchhHHHhhhhhCEEeEEEEEEcCCCCCEEEEEEEECCC
Confidence            9875422   357899999999999999988766554245699999999999999999999997653 345899999999


Q ss_pred             CCCCCCCCC
Q 046788          155 GNVFGQRPY  163 (163)
Q Consensus       155 gN~~g~~~Y  163 (163)
                      ||+.|++||
T Consensus       198 GN~~g~~~Y  206 (209)
T d1qnxa_         198 GNFKNEELY  206 (209)
T ss_dssp             CCCTTSCSS
T ss_pred             CCCCCCCCC
Confidence            999999999