Citrus Sinensis ID: 046974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRSEERLAKGPGGAPTTAPPAAASRSTEVPKKFKSRTPDKAVKA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHccccHHHEEEcHHHHHHHHccccHHHHHHHHHcccEEEccccccccHHHHHHHHHHHccccccHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVSLKLQKRLAASMLKcgrgmvwldpnevneisMANSRQNIRKLVKggfiirkptkiHSRSRALRMKEAKrkgrhsgygkrrgtrearlptkipwMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNkasrseerlakgpggapttappaaasrstevpkkfksrtpdkavka
Flexible Loop (DISEMBL)
MVSLKLQKRLAASmlkcgrgmvwLDPNEVNEISMANSRQNIRKlvkggfiirkptkihsrsralrmkeakrkgrhsgygkrrgtrearlptkipwmrrmrvLRRLLRRYReakkidrhmyhdmymkvkgnvfknkRVLMESIHKSRAEKAREKILSDqleakraknkasrseerlakgpggapttappaaasrstevpkkfksrtpdkavka
Low Complexity Region (SEG)
MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMrrmrvlrrllrryrEAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRSEERLAKgpggapttappaaaSRSTEVPKKFKSRTPDKAVKA
Disordered region (IsUnstruct)
*********LAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRK*************************************TKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLM*************************************************************************
Disordered Region (DISOPRED)
********RLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTK************************************IPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHK********************************************************************
Disordered Region (DISEMBL)
MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKI****************************EARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQ******************************************************
Disordered Region (DISPRO)
**SLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPT********************************RLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAK***********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRxxxxxxxxxxxxxxxxxxxxxASRSEERLAKGPGGAPTTAPPAAASRSTEVPKKFKSRTPDKAVKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9LUQ6	209	60S ribosomal protein L19	yes	no	0.938	0.952	0.791	2e-87
Q9SRX2	214	60S ribosomal protein L19	no	no	0.853	0.845	0.839	1e-78
P49693	208	60S ribosomal protein L19	no	no	0.933	0.951	0.786	5e-78
P36241	203	60S ribosomal protein L19	yes	no	0.778	0.812	0.690	1e-64
P84100	196	60S ribosomal protein L19	no	no	0.825	0.892	0.672	2e-55
Q5RB99	196	60S ribosomal protein L19	yes	no	0.825	0.892	0.672	2e-55
P84099	196	60S ribosomal protein L19	yes	no	0.825	0.892	0.672	2e-55
Q8HXN9	196	60S ribosomal protein L19	N/A	no	0.825	0.892	0.672	2e-55
P84098	196	60S ribosomal protein L19	yes	no	0.825	0.892	0.672	2e-55
D0VWQ5	196	60S ribosomal protein L19	yes	no	0.825	0.892	0.672	2e-55

>sp|Q9LUQ6|RL192_ARATH 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1

 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/206 (79%), Positives = 176/206 (85%), Gaps = 7/206 (3%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLK+QKRLAAS++KCG+G VWLDPNE  +ISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA  + EAKRKGRHSGYGKR+GTREARLPTKI WMRRMRVLRR L +YRE+KKIDRHMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHK +AEKAREK L+DQ EAKR KNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 175 LAKGPGGAPTTAPPAAASRSTEVPKK 200
           LA+GPGG  TT  PA A +  EV KK
Sbjct: 181 LAQGPGGGETTT-PAGAPQQPEVTKK 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1

 Score =  292 bits (747), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/187 (83%), Positives = 170/187 (90%), Gaps = 6/187 (3%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLAAS++KCG+G VWLDPNE ++ISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA +MK AK KGRHSGYGKR+GTREARLPTK+ WMRRMRVLRRLL++YRE KKID+HMY
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYM+VKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 175 LAKGPGG 181
           LAKGPGG
Sbjct: 181 LAKGPGG 187

Arabidopsis thaliana (taxid: 3702)

>sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3

 Score =  290 bits (742), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 162/206 (78%), Positives = 177/206 (85%), Gaps = 8/206 (3%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLA+S+LKCG+  VWLDPNE ++ISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA ++  AKRKGRHSGYGKR+GTREARLPTK+ WMRRMRVLRRLL++YRE KKIDRHMY
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 175 LAKGPGGAPTTAPPAAASRSTEVPKK 200
           LAKGPGG       A  +++ EVP K
Sbjct: 181 LAKGPGG--DIPAAAPPAQTAEVPAK 204

Arabidopsis thaliana (taxid: 3702)

>sp|P36241|RL19_DROME 60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2

 Score =  245 bits (626), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/165 (69%), Positives = 139/165 (84%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M SLKLQKRLAAS+L+CG+  VWLDPNE+NEI+  NSRQNIRKL+K G II+KP  +HSR
Sbjct: 1   MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
            R  +  EA+RKGRH G+GKR+GT  AR+PTK+ WM+R RVLRRLL++YR++KKIDRH+Y
Sbjct: 61  YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAK 165
           HD+YMK KGNVFKNKRVLME IHK +AEK R K+L+DQ EA+R K
Sbjct: 121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165

Drosophila melanogaster (taxid: 7227)

>sp|P84100|RL19_RAT 60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 146/177 (82%), Gaps = 2/177 (1%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           +R  +   A+RKGRH G GKR+GT  AR+P K+ WMRRMR+LRRLLRRYRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
           H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

Rattus norvegicus (taxid: 10116)

>sp|Q5RB99|RL19_PONAB 60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 146/177 (82%), Gaps = 2/177 (1%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           +R  +   A+RKGRH G GKR+GT  AR+P K+ WMRRMR+LRRLLRRYRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
           H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

Pongo abelii (taxid: 9601)

>sp|P84099|RL19_MOUSE 60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 146/177 (82%), Gaps = 2/177 (1%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           +R  +   A+RKGRH G GKR+GT  AR+P K+ WMRRMR+LRRLLRRYRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
           H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

Mus musculus (taxid: 10090)

>sp|Q8HXN9|RL19_MACFA 60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 146/177 (82%), Gaps = 2/177 (1%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           +R  +   A+RKGRH G GKR+GT  AR+P K+ WMRRMR+LRRLLRRYRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
           H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

Macaca fascicularis (taxid: 9541)

>sp|P84098|RL19_HUMAN 60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 146/177 (82%), Gaps = 2/177 (1%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           +R  +   A+RKGRH G GKR+GT  AR+P K+ WMRRMR+LRRLLRRYRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
           H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

Homo sapiens (taxid: 9606)

>sp|D0VWQ5|RL19_CANFA 60S ribosomal protein L19 OS=Canis familiaris GN=RPL19 PE=1 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 146/177 (82%), Gaps = 2/177 (1%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           +R  +   A+RKGRH G GKR+GT  AR+P K+ WMRRMR+LRRLLRRYRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
           H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
297830288	209	60S ribosomal protein L19 [Arabidopsis l	0.943	0.956	0.797	2e-86
15228314	209	60S ribosomal protein L19-2 [Arabidopsis	0.938	0.952	0.791	9e-86
319428655	209	60S ribosomal protein [Phaseolus vulgari	0.952	0.966	0.841	1e-84
388498236	219	unknown [Medicago truncatula]	0.943	0.913	0.824	7e-84
255564262	208	60S ribosomal protein L19, putative [Ric	0.943	0.961	0.842	2e-83
217071450	219	unknown [Medicago truncatula]	0.943	0.913	0.819	3e-83
224079704	210	predicted protein [Populus trichocarpa]	0.952	0.961	0.832	4e-83
351726632	212	uncharacterized protein LOC100527275 [Gl	0.952	0.952	0.824	5e-83
351721197	212	uncharacterized protein LOC100500446 [Gl	0.952	0.952	0.834	5e-82
224134653	209	predicted protein [Populus trichocarpa]	0.952	0.966	0.822	5e-82

>gi|297830288|ref|XP_002883026.1| 60S ribosomal protein L19 [Arabidopsis lyrata subsp. lyrata] gi|297328866|gb|EFH59285.1| 60S ribosomal protein L19 [Arabidopsis lyrata subsp. lyrata]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/207 (79%), Positives = 176/207 (85%), Gaps = 7/207 (3%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLAAS++KCG+G VWLDPNE  +ISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA  + EAKRKGRHSGYGKR+GTREARLPTKI WMRRMRVLRR L +YRE+KKIDRHMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHK +AEKAREK LSDQ EAKR KNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLSDQFEAKRIKNKASRERKFARREER 180

Query: 175 LAKGPGGAPTTAPPAA-ASRSTEVPKK 200
           LA+GPGG  TT P AA   +  EV KK
Sbjct: 181 LAQGPGGGETTTPAAAPVPQQAEVTKK 207

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228314|ref|NP_188300.1| 60S ribosomal protein L19-2 [Arabidopsis thaliana] gi|17865565|sp|Q9LUQ6.1|RL192_ARATH RecName: Full=60S ribosomal protein L19-2 gi|11994633|dbj|BAB02770.1| 60S ribosome protein L19-like [Arabidopsis thaliana] gi|15010618|gb|AAK73968.1| AT3g16780/MGL6_23 [Arabidopsis thaliana] gi|19699260|gb|AAL90996.1| AT3g16780/MGL6_23 [Arabidopsis thaliana] gi|332642343|gb|AEE75864.1| 60S ribosomal protein L19-2 [Arabidopsis thaliana]

 Score =  322 bits (824), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 163/206 (79%), Positives = 176/206 (85%), Gaps = 7/206 (3%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLK+QKRLAAS++KCG+G VWLDPNE  +ISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA  + EAKRKGRHSGYGKR+GTREARLPTKI WMRRMRVLRR L +YRE+KKIDRHMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHK +AEKAREK L+DQ EAKR KNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 175 LAKGPGGAPTTAPPAAASRSTEVPKK 200
           LA+GPGG  TT  PA A +  EV KK
Sbjct: 181 LAQGPGGGETTT-PAGAPQQPEVTKK 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319428655|gb|ADV56679.1| 60S ribosomal protein [Phaseolus vulgaris] gi|319428672|gb|ADV56695.1| 60S ribosomal protein [Phaseolus vulgaris]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/208 (84%), Positives = 185/208 (88%), Gaps = 6/208 (2%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLAAS+LKCGRG VWLDPNE NEISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNESNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA RMKEAKRKGRHSGYGKR+GTREARLPTKI WMRRMRVLRRLLR+YRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 175 LAKGPGGAPTTAPPAAASRSTEVPKKFK 202
           LA+GP    +TAP A A +ST+ PKK K
Sbjct: 181 LAQGPVEKVSTAPSAPAPQSTQAPKKSK 208

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498236|gb|AFK37184.1| unknown [Medicago truncatula]

 Score =  315 bits (807), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 174/211 (82%), Positives = 184/211 (87%), Gaps = 11/211 (5%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLA+S+LKCGRG VWLDPNEVNEISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA RMKEAKRKGRHSGYGKR+GTREARLPTKI WMRRMRVLRRLLR+YREAKKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 175 LAKGPGG-----APTTAPPAAASRSTEVPKK 200
            A+GPGG     AP+ AP AA   +   P+K
Sbjct: 181 FAQGPGGEKPAEAPSAAPVAATKPTQTQPQK 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564262|ref|XP_002523128.1| 60S ribosomal protein L19, putative [Ricinus communis] gi|223537690|gb|EEF39313.1| 60S ribosomal protein L19, putative [Ricinus communis]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 176/209 (84%), Positives = 185/209 (88%), Gaps = 9/209 (4%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLAAS+LKCG+G VWLDPNE NEISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEANEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA RMKEAKRKGRHSGYGKR+GTREARLPTKI WMRRMRVLRRLLR+YRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 175 LAKGPGGA-PTTAPPAAASRSTEVPKKFK 202
           LA+GPG   P  APP  AS+STE  KK K
Sbjct: 181 LAQGPGAEKPIAAPP--ASQSTEGSKKSK 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071450|gb|ACJ84085.1| unknown [Medicago truncatula]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 173/211 (81%), Positives = 183/211 (86%), Gaps = 11/211 (5%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLA+S+LKCGRG VWLDPNEVNEISMANSRQNIRKLVK GFIIRKP KIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPAKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA RMKEAKRKGRHSGYGKR+GTREARLPTKI WMRRMRVLRRLLR+YREAKKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 175 LAKGPGG-----APTTAPPAAASRSTEVPKK 200
            A+GPGG     AP+ AP AA   +   P+K
Sbjct: 181 FAQGPGGEKPAEAPSAAPVAATKPTQTQPQK 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079704|ref|XP_002305919.1| predicted protein [Populus trichocarpa] gi|222848883|gb|EEE86430.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 174/209 (83%), Positives = 183/209 (87%), Gaps = 7/209 (3%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLAAS+LKCG+G VWLDPNE NEISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA RMKEAKRKGRHSGYGKR+GTREARLPTK+ WMRRMRVLRRLLR+YRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 175 LAKGPGGA-PTTAPPAAASRSTEVPKKFK 202
           LA GPG   P  APPAA S+  E  KK K
Sbjct: 181 LAMGPGAEKPVAAPPAAVSQPAEGTKKSK 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726632|ref|NP_001237389.1| uncharacterized protein LOC100527275 [Glycine max] gi|255631934|gb|ACU16334.1| unknown [Glycine max]

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 174/211 (82%), Positives = 185/211 (87%), Gaps = 9/211 (4%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRL+AS+LKCGRG VWLDPNEVNEISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA RMKEAKRKGRHSGYGKR+GTREARLPTKI WMRRMRVLRRLLR+YRE+KKID+HMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 175 LAKGPGGAPTTAPPAAAS---RSTEVPKKFK 202
           LA+GP     TAP A A+   +S + PKK K
Sbjct: 181 LAQGPVDKSFTAPSAPAATVPQSAQAPKKSK 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721197|ref|NP_001238225.1| uncharacterized protein LOC100500446 [Glycine max] gi|255630353|gb|ACU15533.1| unknown [Glycine max]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 176/211 (83%), Positives = 187/211 (88%), Gaps = 9/211 (4%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLAAS+LKCGRG VWLDPNEVNEISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA RMKEAK+KGRHSGYGKR+GTREARLPTKI WMRRMRVLRRLLR+YRE+KKID+HMY
Sbjct: 61  SRARRMKEAKKKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180

Query: 175 LAKGPGG---APTTAPPAAASRSTEVPKKFK 202
           LA+GP G      +AP A A +ST+ PKKFK
Sbjct: 181 LAQGPIGKTSTAPSAPAATAPQSTQAPKKFK 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134653|ref|XP_002327457.1| predicted protein [Populus trichocarpa] gi|118484109|gb|ABK93939.1| unknown [Populus trichocarpa] gi|222836011|gb|EEE74432.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 171/208 (82%), Positives = 181/208 (87%), Gaps = 6/208 (2%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLAAS+LKCG+G VWLDPNE NEISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA RM EAKRKGRHSGYGKR+GTREARLPTK+ WMRRMRVLRRLLR+YRE+KKID+HMY
Sbjct: 61  SRARRMNEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMYMKVKGNVFKNKRVLMESIHKS+AEKAREK L+DQ EAKRAKNKASR       EER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLADQFEAKRAKNKASRERKFARREER 180

Query: 175 LAKGPGGAPTTAPPAAASRSTEVPKKFK 202
           LA GPG     A P AAS+ TE  KK K
Sbjct: 181 LAMGPGAEKAVAAPPAASQPTEGTKKSK 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2024695	214	emb2386 "embryo defective 2386	0.834	0.827	0.770	1e-68
TAIR|locus:2137854	208	AT4G02230 [Arabidopsis thalian	0.948	0.966	0.7	4.4e-68
TAIR|locus:2089383	209	AT3G16780 [Arabidopsis thalian	0.834	0.846	0.759	7.2e-68
FB|FBgn0002607	203	RpL19 "Ribosomal protein L19"	0.830	0.866	0.612	6.1e-55
UNIPROTKB|Q3T0W9	196	RPL19 "60S ribosomal protein L	0.825	0.892	0.598	1.9e-53
UNIPROTKB|D0VWQ5	196	RPL19 "60S ribosomal protein L	0.825	0.892	0.598	1.9e-53
UNIPROTKB|P84098	196	RPL19 "60S ribosomal protein L	0.825	0.892	0.598	1.9e-53
MGI|MGI:98020	196	Rpl19 "ribosomal protein L19"	0.825	0.892	0.598	1.9e-53
RGD|621183	196	Rpl19 "ribosomal protein L19"	0.825	0.892	0.598	1.9e-53
UNIPROTKB|J3KTE4	194	RPL19 "Ribosomal protein L19"	0.811	0.886	0.603	3e-53

TAIR|locus:2024695 emb2386 "embryo defective 2386" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 141/183 (77%), Positives = 152/183 (83%)

Query:     1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
             MVSLKLQKRLAAS++KCG+G VWLDPNE ++ISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct:     1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query:    61 SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
             SRA +MK AK KGRHSGYGKR+GTREARLPTK+ WM              E KKID+HMY
Sbjct:    61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
             HDMYM+VKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct:   121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query:   175 LAK 177
             LAK
Sbjct:   181 LAK 183

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2137854 AT4G02230 [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 147/210 (70%), Positives = 161/210 (76%)

Query:     1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
             MVSLKLQKRLA+S+LKCG+  VWLDPNE ++ISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct:     1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query:    61 SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
             SRA ++  AKRKGRHSGYGKR+GTREARLPTK+ WM              E KKIDRHMY
Sbjct:    61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
             HDMYMKVKGNVFKNKRVLMESIHKS+AEKAREK LSDQ EAKRAKNKASR       EER
Sbjct:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query:   175 LAKXXXXXXXXXXXXXXSRSTEVPKKFKSR 204
             LAK              +++ EVP K KS+
Sbjct:   181 LAKGPGGDIPAAAPP--AQTAEVPAK-KSK 207

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2089383 AT3G16780 [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 139/183 (75%), Positives = 150/183 (81%)

Query:     1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
             MVSLK+QKRLAAS++KCG+G VWLDPNE  +ISMANSRQNIRKLVK GFIIRKPTKIHSR
Sbjct:     1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query:    61 SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
             SRA  + EAKRKGRHSGYGKR+GTREARLPTKI WM              E+KKIDRHMY
Sbjct:    61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
             HDMYMKVKGNVFKNKRVLMESIHK +AEKAREK L+DQ EAKR KNKASR       EER
Sbjct:   121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query:   175 LAK 177
             LA+
Sbjct:   181 LAQ 183

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

FB|FBgn0002607 RpL19 "Ribosomal protein L19" [Drosophila melanogaster (taxid:7227)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 109/178 (61%), Positives = 134/178 (75%)

Query:     1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
             M SLKLQKRLAAS+L+CG+  VWLDPNE+NEI+  NSRQNIRKL+K G II+KP  +HSR
Sbjct:     1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSR 60

Query:    61 SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
              R  +  EA+RKGRH G+GKR+GT  AR+PTK+ WM              ++KKIDRH+Y
Sbjct:    61 YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERLA 176
             HD+YMK KGNVFKNKRVLME IHK +AEK R K+L+DQ EA+R K + +R   EER+A
Sbjct:   121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQKVREARKRREERIA 178

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|Q3T0W9 RPL19 "60S ribosomal protein L19" [Bos taurus (taxid:9913)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 106/177 (59%), Positives = 132/177 (74%)

Query:     1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
             M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
             +R  +   A+RKGRH G GKR+GT  AR+P K+ WM              E+KKIDRHMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
             H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|D0VWQ5 RPL19 "60S ribosomal protein L19" [Canis lupus familiaris (taxid:9615)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 106/177 (59%), Positives = 132/177 (74%)

Query:     1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
             M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
             +R  +   A+RKGRH G GKR+GT  AR+P K+ WM              E+KKIDRHMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
             H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P84098 RPL19 "60S ribosomal protein L19" [Homo sapiens (taxid:9606)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 106/177 (59%), Positives = 132/177 (74%)

Query:     1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
             M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
             +R  +   A+RKGRH G GKR+GT  AR+P K+ WM              E+KKIDRHMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
             H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

GO:0003723 "RNA binding" evidence=TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS;TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA;TAS

GO:0006412 "translation" evidence=NAS;TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

MGI|MGI:98020 Rpl19 "ribosomal protein L19" [Mus musculus (taxid:10090)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 106/177 (59%), Positives = 132/177 (74%)

Query:     1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
             M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
             +R  +   A+RKGRH G GKR+GT  AR+P K+ WM              E+KKIDRHMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
             H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IC

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621183 Rpl19 "ribosomal protein L19" [Rattus norvegicus (taxid:10116)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 106/177 (59%), Positives = 132/177 (74%)

Query:     1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
             M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
             +R  +   A+RKGRH G GKR+GT  AR+P K+ WM              E+KKIDRHMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
             H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO

UNIPROTKB|J3KTE4 RPL19 "Ribosomal protein L19" [Homo sapiens (taxid:9606)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 105/174 (60%), Positives = 131/174 (75%)

Query:     4 LKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRA 63
             L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR+R 
Sbjct:     2 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 61

Query:    64 LRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMYHDM 123
              +   A+RKGRH G GKR+GT  AR+P K+ WM              E+KKIDRHMYH +
Sbjct:    62 RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 121

Query:   124 YMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
             Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct:   122 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 175

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8HXN9	RL19_MACFA	No assigned EC number	0.6723	0.8254	0.8928	N/A	no
P05734	RL19A_SCHPO	No assigned EC number	0.6012	0.7452	0.8186	yes	no
P0CX83	RL19B_YEAST	No assigned EC number	0.5722	0.7830	0.8783	yes	no
P0CX82	RL19A_YEAST	No assigned EC number	0.5722	0.7830	0.8783	yes	no
O02639	RL19_CAEEL	No assigned EC number	0.6306	0.8207	0.8787	yes	no
P0DJ60	RL19_TETTS	No assigned EC number	0.6511	0.8113	0.9297	N/A	no
Q9SRX2	RL191_ARATH	No assigned EC number	0.8395	0.8537	0.8457	no	no
Q6P5L3	RL19_DANRE	No assigned EC number	0.6787	0.7783	0.8418	yes	no
P14329	RL19_DICDI	No assigned EC number	0.6607	0.7924	0.9032	yes	no
Q7ZYS1	RL19_XENLA	No assigned EC number	0.6779	0.8254	0.8883	N/A	no
P49693	RL193_ARATH	No assigned EC number	0.7864	0.9339	0.9519	no	no
D0VWQ5	RL19_CANFA	No assigned EC number	0.6723	0.8254	0.8928	yes	no
P36241	RL19_DROME	No assigned EC number	0.6909	0.7783	0.8128	yes	no
Q5RB99	RL19_PONAB	No assigned EC number	0.6723	0.8254	0.8928	yes	no
P84099	RL19_MOUSE	No assigned EC number	0.6723	0.8254	0.8928	yes	no
P84098	RL19_HUMAN	No assigned EC number	0.6723	0.8254	0.8928	yes	no
Q9LUQ6	RL192_ARATH	No assigned EC number	0.7912	0.9386	0.9521	yes	no
Q3T0W9	RL19_BOVIN	No assigned EC number	0.6723	0.8254	0.8928	yes	no
O42699	RL19B_SCHPO	No assigned EC number	0.6139	0.7452	0.8186	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.3__1844__AT3G16780.1	annotation not avaliable (209 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.7__2491__AT4G18100.1	annotation not avaliable (133 aa)	•			•	•	•	•		0.929
	fgenesh1_pg.C_scaffold_8000144	annotation not avaliable (133 aa)	•			•	•	•	•		0.927
	scaffold_603399.1	annotation not avaliable (194 aa)	•			•	•	•	•		0.905
	fgenesh2_kg.1__3446__AT1G33140.1	annotation not avaliable (194 aa)	•			•	•	•	•		0.901
	fgenesh2_kg.8__2660__AT5G67510.1	annotation not avaliable (146 aa)	•			•	•	•	•		0.897
	scaffold_502012.1	annotation not avaliable (146 aa)	•			•	•	•	•		0.883
	fgenesh2_kg.2__971__AT1G67430.1	annotation not avaliable (175 aa)	•			•	•	•			0.855
	scaffold_304047.1	annotation not avaliable (261 aa)	•			•		•	•		0.852
	fgenesh2_kg.1__2897__AT1G27400.1	annotation not avaliable (176 aa)	•			•	•	•			0.852
	fgenesh2_kg.8__1775__AT5G58420.1	annotation not avaliable (262 aa)	•			•		•	•		0.847

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
cd01417	164	cd01417, Ribosomal_L19e_E, Ribosomal protein L19e,	7e-82
PTZ00097	175	PTZ00097, PTZ00097, 60S ribosomal protein L19; Pro	1e-80
cd00481	145	cd00481, Ribosomal_L19e, Ribosomal protein L19e	1e-64
pfam01280	148	pfam01280, Ribosomal_L19e, Ribosomal protein L19e	4e-64
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	1e-48
COG2147	150	COG2147, RPL19A, Ribosomal protein L19E [Translati	4e-44
PRK08570	150	PRK08570, rpl19e, 50S ribosomal protein L19e; Revi	7e-38
cd01418	145	cd01418, Ribosomal_L19e_A, Ribosomal protein L19e,	4e-32

>gnl|CDD|238705 cd01417, Ribosomal_L19e_E, Ribosomal protein L19e, eukaryotic

 Score =  240 bits (614), Expect = 7e-82
 Identities = 120/164 (73%), Positives = 146/164 (89%)

Query: 4   LKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRA 63
           L+LQKRLAAS+LKCG+  VWLDPNE++EIS ANSRQ+IRKL+K G II+KP K+HSRSRA
Sbjct: 1   LRLQKRLAASVLKCGKRKVWLDPNEISEISNANSRQSIRKLIKDGLIIKKPVKVHSRSRA 60

Query: 64  LRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDM 123
            +  EAKRKGRH GYGKR+GT  AR+P+K+ WMRR RVLRRLL++YRE+KKID+H+YH++
Sbjct: 61  RKRHEAKRKGRHMGYGKRKGTANARMPSKVLWMRRQRVLRRLLKKYRESKKIDKHLYHEL 120

Query: 124 YMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNK 167
           Y+K KGNVFKNKRVLME IHK++AEKAREK L+DQ EA+RAKNK
Sbjct: 121 YLKAKGNVFKNKRVLMEHIHKAKAEKAREKELADQAEARRAKNK 164

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 164

>gnl|CDD|185443 PTZ00097, PTZ00097, 60S ribosomal protein L19; Provisional

 Score =  238 bits (608), Expect = 1e-80
 Identities = 121/172 (70%), Positives = 147/172 (85%)

Query: 3   SLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSR 62
           +L+LQKRLAAS+LKCG+  VWLDPNE +EIS+ANSR +IRKL+K G IIRKP  +HSR+R
Sbjct: 1   NLRLQKRLAASVLKCGKNRVWLDPNEASEISLANSRFSIRKLIKDGLIIRKPVAVHSRAR 60

Query: 63  ALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHD 122
           A R  EAKRKGRH+G GKRRGTREAR+PTK+ WMRR RVLRRLLR+YR AKKIDRHMYH+
Sbjct: 61  ARRFHEAKRKGRHTGIGKRRGTREARMPTKVLWMRRQRVLRRLLRKYRAAKKIDRHMYHE 120

Query: 123 MYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRSEER 174
            Y+K KGN FKNKRVL+E+IHK++ EK +EK + DQLEA+RAK KA R++ +
Sbjct: 121 FYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQLEARRAKAKALRNKRK 172

Length = 175

>gnl|CDD|238268 cd00481, Ribosomal_L19e, Ribosomal protein L19e

 Score =  196 bits (500), Expect = 1e-64
 Identities = 88/145 (60%), Positives = 117/145 (80%)

Query: 4   LKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRA 63
           L+LQKRLAA +LKCG+  VW+DPNE+ EI+ AN+R++IRKL+K G II+KP K HSR RA
Sbjct: 1   LRLQKRLAADILKCGKNRVWIDPNELEEIANANTREDIRKLIKDGLIIKKPKKGHSRGRA 60

Query: 64  LRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDM 123
            +  EA+RKGRH G G R+GT+ AR+P+K  W+RR+R LRRLL++ R++ KID+H Y ++
Sbjct: 61  RKRHEARRKGRHRGPGSRKGTKGARMPSKELWIRRIRALRRLLKKLRDSGKIDKHTYREL 120

Query: 124 YMKVKGNVFKNKRVLMESIHKSRAE 148
           Y+K KGNVFKNKR L E IHK++AE
Sbjct: 121 YLKAKGNVFKNKRHLKEYIHKAKAE 145

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 145

>gnl|CDD|201707 pfam01280, Ribosomal_L19e, Ribosomal protein L19e

 Score =  195 bits (497), Expect = 4e-64
 Identities = 88/148 (59%), Positives = 112/148 (75%)

Query: 2   VSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRS 61
           + LKLQKRLAA +L CG+  VW+DPNE+ EI+ A +R++IRKL+K G II+KP K HSR 
Sbjct: 1   MDLKLQKRLAADVLGCGKNRVWIDPNELEEIADAITREDIRKLIKDGLIIKKPKKGHSRG 60

Query: 62  RALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYH 121
           RA + KE +RKGRH G G R+GT+ AR+P K  W+RR+R LRRLLR  R+A KID+H Y 
Sbjct: 61  RARKRKEKRRKGRHRGPGSRKGTKGARMPKKELWIRRIRALRRLLRELRDAGKIDKHTYR 120

Query: 122 DMYMKVKGNVFKNKRVLMESIHKSRAEK 149
           ++Y K KG VFKNK  L E IHK++AEK
Sbjct: 121 ELYRKAKGGVFKNKAHLKEYIHKAKAEK 148

Length = 148

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score =  162 bits (410), Expect = 1e-48
 Identities = 113/174 (64%), Positives = 140/174 (80%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQ RLAA +L+CGR  VWLDPNE +EIS ANSR+++RKL+K G IIRKP K+HSR
Sbjct: 1   MVSLKLQARLAADILRCGRHRVWLDPNEASEISNANSRKSVRKLIKDGLIIRKPVKVHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SR   MKEAK  GRH G G+R GTREAR+P+K  WMRR+R+LRRLLR+YRE KKIDRH+Y
Sbjct: 61  SRWRHMKEAKSMGRHEGAGRREGTREARMPSKELWMRRLRILRRLLRKYREEKKIDRHIY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRSEER 174
            ++Y+K KGNVF+NKR LME IHK + EK +E+ L++QL AKR K++  R + R
Sbjct: 121 RELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRHKAR 174

Length = 357

>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]

 Score =  144 bits (365), Expect = 4e-44
 Identities = 69/149 (46%), Positives = 96/149 (64%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M +L+ QKRLAA +L  G   VW+DPNE+ EI+ A +R++IR L+K G I  KP K  SR
Sbjct: 1   MSNLRTQKRLAADILGVGENRVWIDPNEIEEIASAITREDIRALIKDGVIKAKPKKGISR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
            RA +    K+KGR  G G R+GT+ AR+P+K  W++R+R LRR LR+ R+  KID+H Y
Sbjct: 61  GRARKRHAQKKKGRRRGPGSRKGTKGARMPSKERWIKRIRALRRELRKLRDDGKIDKHTY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEK 149
             +Y   KG  FK+K  L   I +++  K
Sbjct: 121 RKLYRMAKGGAFKSKSHLKSYIEEAKLLK 149

Length = 150

>gnl|CDD|236295 PRK08570, rpl19e, 50S ribosomal protein L19e; Reviewed

 Score =  128 bits (323), Expect = 7e-38
 Identities = 61/138 (44%), Positives = 83/138 (60%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M+ L  QKRLAA +L  G   VW+DP  + +++ A +R++IR+L+K G I  KP K  SR
Sbjct: 1   MMDLSAQKRLAADILGVGVSRVWIDPEALEDVAEAITREDIRELIKEGVIKAKPKKGISR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
            RA    E ++KGR  G G R+G + AR P K  W+ R+R LRR LR  R+  KIDR  Y
Sbjct: 61  GRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRELRDEGKIDRKTY 120

Query: 121 HDMYMKVKGNVFKNKRVL 138
             +Y K KG  F++   L
Sbjct: 121 RKLYRKAKGGEFRSVSHL 138

Length = 150

>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal

 Score =  113 bits (284), Expect = 4e-32
 Identities = 55/132 (41%), Positives = 77/132 (58%)

Query: 4   LKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRA 63
           L  Q+RLAA +L  G   VW+DP  + E++ A +R +IR L+K G I  KP K  SR R 
Sbjct: 1   LSSQRRLAADILGVGINRVWIDPERLEEVAEAITRDDIRALIKEGVIKAKPKKGISRGRL 60

Query: 64  LRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDM 123
               E ++KGR  G G R+G + AR P K  W++ +R LRR L+  R+  KID+  Y  +
Sbjct: 61  KERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRYLKELRDKGKIDKKTYRKL 120

Query: 124 YMKVKGNVFKNK 135
           Y K KG  F++ 
Sbjct: 121 YRKAKGGSFRSL 132

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG1696	193	consensus 60s ribosomal protein L19 [Translation,	100.0
PTZ00097	175	60S ribosomal protein L19; Provisional	100.0
cd01417	164	Ribosomal_L19e_E Ribosomal protein L19e, eukaryoti	100.0
PTZ00436	357	60S ribosomal protein L19-like protein; Provisiona	100.0
PF01280	148	Ribosomal_L19e: Ribosomal protein L19e; InterPro:	100.0
cd00481	145	Ribosomal_L19e Ribosomal protein L19e. L19e is fou	100.0
PRK08570	150	rpl19e 50S ribosomal protein L19e; Reviewed	100.0
cd01418	145	Ribosomal_L19e_A Ribosomal protein L19e, archaeal.	100.0
COG2147	150	RPL19A Ribosomal protein L19E [Translation, riboso	100.0

>KOG1696 consensus 60s ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.7e-87  Score=562.93  Aligned_cols=185  Identities=72%  Similarity=1.112  Sum_probs=183.7

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974            1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK   80 (212)
Q Consensus         1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk   80 (212)
                      |++|++|||||||||+||+.+|||||||++||++|||||+||+||+||+||.+|+++|||+|||++.+++++|||+|+|+
T Consensus         1 Ms~lrlqKRLAssVl~cGKkKvWlDpNE~~eI~~ansRq~irkLikdg~iI~Kp~~vhsr~r~rk~~~akrkgrH~G~GK   80 (193)
T KOG1696|consen    1 MSNLRLQKRLAASVLKCGKKKVWLDPNEISEISGANSRQNIRKLIKDGLIIRKPVTVHSRSRCRKRLEAKRKGRHMGYGK   80 (193)
T ss_pred             CchHHHHHHHHHHHHHhcccceeeCccHHHHhcccchHHHHHHHHhCCeEeecchhhhHHHHHHHHHHHHHhccccCccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974           81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE  160 (212)
Q Consensus        81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae  160 (212)
                      |+||+|||||+|++||+|||+||++|++|||+|+||+|+||+||+++|||+|+|+++||||||+.|||++|+|+|+||||
T Consensus        81 RkGTanArmP~k~~Wmrr~RvlRrlL~kyR~skKIdkh~YH~lY~k~KGnvFKnK~~LmE~I~K~KAe~~r~K~LadQae  160 (193)
T KOG1696|consen   81 RKGTANARMPSKVLWMRRMRVLRRLLKKYRDSKKIDKHMYHDLYLKVKGNVFKNKRVLMEHIHKSKAEKAREKLLADQAE  160 (193)
T ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhH--HHHhccCCCCCCCC
Q 046974          161 AKRAKNKASRS--EERLAKGPGGAPTT  185 (212)
Q Consensus       161 Arr~k~k~~r~--eerl~~k~~e~~~~  185 (212)
                      |+|.+++++++  ||++|++++|++.+
T Consensus       161 Arr~k~k~ar~rreer~~~k~~~~~~~  187 (193)
T KOG1696|consen  161 ARRLKNKAARKRREERLAAKPQELIKT  187 (193)
T ss_pred             HHHhhhHHHhhhHHHHHhhchhhhhcc
Confidence            99999999999  99999999999983

>PTZ00097 60S ribosomal protein L19; Provisional

Probab=100.00  E-value=2.7e-79  Score=515.12  Aligned_cols=169  Identities=72%  Similarity=1.133  Sum_probs=167.6

Q ss_pred             chhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCCc
Q 046974            3 SLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKRR   82 (212)
Q Consensus         3 ~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~GkRK   82 (212)
                      +|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+|||+
T Consensus         1 ~l~~QKRLAA~vL~cG~~rVWiDP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~SR~R~r~~~~~k~kGR~~G~G~RK   80 (175)
T PTZ00097          1 NLRLQKRLAASVLKCGKNRVWLDPNEASEISLANSRFSIRKLIKDGLIIRKPVAVHSRARARRFHEAKRKGRHTGIGKRR   80 (175)
T ss_pred             CchHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCCCc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 046974           83 GTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAK  162 (212)
Q Consensus        83 Gt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQaeAr  162 (212)
                      ||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||+.++|++++++|+||+||+
T Consensus        81 Gtk~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKGn~Fknk~~L~~~I~~~kae~~r~k~l~~q~~a~  160 (175)
T PTZ00097         81 GTREARMPTKVLWMRRQRVLRRLLRKYRAAKKIDRHMYHEFYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQLEAR  160 (175)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhH
Q 046974          163 RAKNKASRS  171 (212)
Q Consensus       163 r~k~k~~r~  171 (212)
                      +.+++++++
T Consensus       161 r~k~~~~~~  169 (175)
T PTZ00097        161 RAKAKALRN  169 (175)
T ss_pred             HHHHHHHHH
Confidence            999999987

>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic

Probab=100.00  E-value=7.4e-79  Score=508.31  Aligned_cols=164  Identities=73%  Similarity=1.165  Sum_probs=162.1

Q ss_pred             hhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCCcc
Q 046974            4 LKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKRRG   83 (212)
Q Consensus         4 L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~GkRKG   83 (212)
                      |++|+||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+|||+|
T Consensus         1 l~~QKRLAA~vL~cG~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~SR~R~r~~~~~k~kGR~~G~G~RkG   80 (164)
T cd01417           1 LRLQKRLAASVLKCGKRKVWLDPNEISEISNANSRQSIRKLIKDGLIIKKPVKVHSRSRARKRHEAKRKGRHMGYGKRKG   80 (164)
T ss_pred             CcHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCcCCHHHHHHHHHHHHhCCCCCCCCCcC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 046974           84 TREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKR  163 (212)
Q Consensus        84 t~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQaeArr  163 (212)
                      |+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|++|++.|+||+||++
T Consensus        81 t~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKGn~Fknk~~L~~~I~~~kae~~r~k~l~~q~~a~r  160 (164)
T cd01417          81 TANARMPSKVLWMRRQRVLRRLLKKYRESKKIDKHLYHELYLKAKGNVFKNKRVLMEHIHKAKAEKAREKELADQAEARR  160 (164)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 046974          164 AKNK  167 (212)
Q Consensus       164 ~k~k  167 (212)
                      ++++
T Consensus       161 ~~~~  164 (164)
T cd01417         161 AKNK  164 (164)
T ss_pred             hccC
Confidence            9874

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>PTZ00436 60S ribosomal protein L19-like protein; Provisional

Probab=100.00  E-value=1.4e-77  Score=540.55  Aligned_cols=171  Identities=65%  Similarity=1.053  Sum_probs=168.7

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974            1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK   80 (212)
Q Consensus         1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk   80 (212)
                      |++|++||||||+||+||++|||||||+++||++||||+|||+||+||+|+++|++||||+|+|++++++++|||+|+||
T Consensus         1 M~dLklQKRLAAsVL~cGk~RVWiDPnel~eIa~AiTReDIRkLIkdGlIikKp~KGhSRgRaRkr~eaKrKGRhrG~Gs   80 (357)
T PTZ00436          1 MVSLKLQARLAADILRCGRHRVWLDPNEASEISNANSRKSVRKLIKDGLIIRKPVKVHSRSRWRHMKEAKSMGRHEGAGR   80 (357)
T ss_pred             CcchHHHHHHHHHHhCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCcccCChHHHHHHHHHHHhCcCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974           81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE  160 (212)
Q Consensus        81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae  160 (212)
                      |+||+|||||+|++||+|||+||++|++|||+|+||+|+||+||+++|||+|+|++||++|||+.|+|+.|+++|.||+|
T Consensus        81 RKGTk~AR~P~K~~WIrRIRaLRRlLKklRd~gKIDkh~YR~LYrKAKGn~FKNK~~L~e~I~k~KaE~~R~K~L~dQ~e  160 (357)
T PTZ00436         81 REGTREARMPSKELWMRRLRILRRLLRKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLA  160 (357)
T ss_pred             CcCcccccCcHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhH
Q 046974          161 AKRAKNKASRS  171 (212)
Q Consensus       161 Arr~k~k~~r~  171 (212)
                      |+|.|+++.|-
T Consensus       161 ArR~k~~~~r~  171 (357)
T PTZ00436        161 AKRLKDEQHRH  171 (357)
T ss_pred             HHHHHhhhhhh
Confidence            99999987654

>PF01280 Ribosomal_L19e: Ribosomal protein L19e; InterPro: IPR000196 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1e-74  Score=476.99  Aligned_cols=148  Identities=65%  Similarity=1.047  Sum_probs=130.9

Q ss_pred             CchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCC
Q 046974            2 VSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKR   81 (212)
Q Consensus         2 ~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~GkR   81 (212)
                      |+|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+|
T Consensus         1 m~l~~QKRLAa~vL~~G~~rVw~DP~~~~eI~~A~tR~~IR~LIk~G~I~~k~~k~~Sr~R~r~~~~~r~kGr~~G~G~R   80 (148)
T PF01280_consen    1 MDLKLQKRLAASVLGCGKNRVWIDPNELEEIANAITREDIRKLIKDGLIIKKPVKGHSRGRARKRKEARRKGRHRGPGKR   80 (148)
T ss_dssp             -STHHHHHHHHHHHTS-GGGEEE-STTHHHHHH--SHHHHHHHHHTTSEEE---S--STHHHHHHHHHHHCTTS-SSTTS
T ss_pred             CccHHHHHHHHHHHCCCCCcEEeCHHHHHHHHhhhhHHHHHHHHHCCCeEeCCCCCCchHHHHHHHHHHhhccccccccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHH
Q 046974           82 RGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEK  149 (212)
Q Consensus        82 KGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek  149 (212)
                      +||+|||||+|+.||++||+||++|++|||+|+||+|+||+||++||||+|+|++||+||||++++|+
T Consensus        81 kGt~~AR~~~K~~W~~riR~lRr~Lk~~r~~~kID~~~Yr~lY~kaKGn~Fkn~~~L~~~i~~~k~e~  148 (148)
T PF01280_consen   81 KGTKNARMPEKELWMRRIRALRRLLKRLRDSGKIDRHMYRSLYRKAKGNVFKNKRHLMEHIHKLKAEK  148 (148)
T ss_dssp             -S-HHHHS-HHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHCH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCcccCHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents structural domain of the ribosomal protein L19 from eukaryotes, as well as L19e from archaea []. L19/L19e is absent in bacteria. L19/L19e is part of the large ribosomal subunit, whose structure has been determined in a number of eukaryotic and archaeal species []. L19/L19e is a multi-helical protein consisting of two different 3-helical domains connected by a long, partly helical linker.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_T 3O58_S 3O5H_S 3IZS_T 2WWA_J 1S1I_P 2WW9_J 2ZKR_7 4A1A_O 4A1C_O ....

>cd00481 Ribosomal_L19e Ribosomal protein L19e

Probab=100.00  E-value=4.5e-73  Score=465.98  Aligned_cols=145  Identities=61%  Similarity=1.046  Sum_probs=142.9

Q ss_pred             hhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCCcc
Q 046974            4 LKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKRRG   83 (212)
Q Consensus         4 L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~GkRKG   83 (212)
                      |++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+|||+|
T Consensus         1 l~~QkRLAA~vL~~G~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~RkG   80 (145)
T cd00481           1 LRLQKRLAADILKCGKNRVWIDPNELEEIANANTREDIRKLIKDGLIIKKPKKGHSRGRARKRHEARRKGRHRGPGSRKG   80 (145)
T ss_pred             CcHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCcCCCCCCccC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHH
Q 046974           84 TREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAE  148 (212)
Q Consensus        84 t~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kae  148 (212)
                      |+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|
T Consensus        81 t~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKG~~Fknk~~L~~~i~~~~~~  145 (145)
T cd00481          81 TKGARMPSKELWIRRIRALRRLLKKLRDSGKIDKHTYRELYLKAKGNVFKNKRHLKEYIHKAKAE  145 (145)
T ss_pred             ccccCCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999998764

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed

Probab=100.00  E-value=7.9e-73  Score=466.67  Aligned_cols=147  Identities=42%  Similarity=0.708  Sum_probs=145.1

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974            1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK   80 (212)
Q Consensus         1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk   80 (212)
                      |++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+||
T Consensus         1 M~~l~~qkRLAA~iL~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~   80 (150)
T PRK08570          1 MMDLSAQKRLAADILGVGVSRVWIDPEALEDVAEAITREDIRELIKEGVIKAKPKKGISRGRARERHEKRKKGRRRGPGS   80 (150)
T ss_pred             CcchHHHHHHHHHHHCCCccceeeCHHHHHHHHHHhhHHHHHHHHHCCCeeecCccCCChHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHH
Q 046974           81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRA  147 (212)
Q Consensus        81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~ka  147 (212)
                      |+||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++||+....
T Consensus        81 RkGt~~AR~p~K~~W~~riR~lRr~Lk~lR~~~kId~~~Yr~lY~kaKGn~Fkn~~~L~~~i~~~~~  147 (150)
T PRK08570         81 RKGKKGARTPKKERWINRIRALRRYLRELRDEGKIDRKTYRKLYRKAKGGEFRSVSHLKTYIEEHGL  147 (150)
T ss_pred             CCCcccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCccCCHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999998653

>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal

Probab=100.00  E-value=4.3e-71  Score=454.22  Aligned_cols=142  Identities=39%  Similarity=0.692  Sum_probs=140.3

Q ss_pred             hhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCCcc
Q 046974            4 LKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKRRG   83 (212)
Q Consensus         4 L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~GkRKG   83 (212)
                      |++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+|||+|
T Consensus         1 l~~QkRLAA~iL~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~RkG   80 (145)
T cd01418           1 LSSQRRLAADILGVGINRVWIDPERLEEVAEAITRDDIRALIKEGVIKAKPKKGISRGRLKERHEKRKKGRRRGPGSRKG   80 (145)
T ss_pred             CcHHHHHHHHHHCCCCCeeeeChHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCCHHHHHHHHHHHHhCcCCCCCCCCC
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHH
Q 046974           84 TREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKS  145 (212)
Q Consensus        84 t~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~  145 (212)
                      |+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++||...
T Consensus        81 t~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kId~~~Yr~lY~kaKGn~Fkn~~~L~~~I~~~  142 (145)
T cd01418          81 KKGARTPKKERWIKTIRALRRYLKELRDKGKIDKKTYRKLYRKAKGGSFRSLSHLKSYLKQH  142 (145)
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999875

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.9e-67  Score=431.18  Aligned_cols=149  Identities=46%  Similarity=0.772  Sum_probs=146.5

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974            1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK   80 (212)
Q Consensus         1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk   80 (212)
                      |+||+.|+||||+||+||+++||||||+++||++|+||+|||.||+||+|+.+|++|+|++|+++++++++||||+||||
T Consensus         1 M~nl~~qkRLAA~il~vG~~Rvwidp~~~eei~~A~TR~dIr~LIk~g~I~~k~~kg~SrgR~rkr~~qkkkgr~rG~Gs   80 (150)
T COG2147           1 MSNLRTQKRLAADILGVGENRVWIDPNEIEEIASAITREDIRALIKDGVIKAKPKKGISRGRARKRHAQKKKGRRRGPGS   80 (150)
T ss_pred             CchHHHHHHHHHHHHccCcceeeeChHHHHHHHHhhhHHHHHHHHHCCCeeeccccccchHHHHHHHHHHhcccCCCCCc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHH
Q 046974           81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEK  149 (212)
Q Consensus        81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek  149 (212)
                      |+||++||||+|+.||.+||+||++|++||++|+||+|+||.||+++|||.|+++++|.+||.+.+.++
T Consensus        81 RKG~k~AR~p~K~~Wi~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~~~~k  149 (150)
T COG2147          81 RKGTKGARMPSKERWIKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEAKLLK  149 (150)
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
3izr_T	209	Localization Of The Large Subunit Ribosomal Protein		5e-75
2zkr_p	196	Structure Of A Mammalian Ribosomal 60s Subunit With		8e-57
4a1a_O	185	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-53
3zf7_T	260	High-resolution Cryo-electron Microscopy Structure		6e-51
4a17_O	185	T.Thermophila 60s Ribosomal Subunit In Complex With		4e-47
2ww9_J	189	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		7e-45
3jyw_P	176	Structure Of The 60s Proteins For Eukaryotic Riboso		1e-38
1s1i_P	142	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		1e-38
3j21_Q	150	Promiscuous Behavior Of Proteins In Archaeal Riboso		1e-24
3ow2_O	143	Crystal Structure Of Enhanced Macrolide Bound To 50		2e-13
1ffk_M	148	Crystal Structure Of The Large Ribosomal Subunit Fr		2e-13
1s72_P	149	Refined Crystal Structure Of The Haloarcula Marismo		2e-13
3g4s_P	143	Co-Crystal Structure Of Tiamulin Bound To The Large		1e-12

>pdb|3IZR|T Chain T, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 209

Iteration: 1
 Score =  276 bits (707), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 143/182 (78%), Positives = 152/182 (83%), Gaps = 6/182 (3%)
Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQKRLA+S+LKCG+G VWLDPNEVNEISMANSRQNIRKLVK GFIIRKP KIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSR 60
Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
           SRA R  EAK+KGRHSGYGKRRGTREARLPTKI WM              EAKKID+HMY
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS------EER 174
           HDMY+KVKGN+FKNKRVLMESIHKS+AEKAREK LSDQ EAKRAK+KASR       EER
Sbjct: 121 HDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKIARREER 180
Query: 175 LA 176
           LA
Sbjct: 181 LA 182

>pdb|2ZKR|PP Chain p, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 196

Iteration: 1
 Score =  216 bits (550), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 106/177 (59%), Positives = 132/177 (74%), Gaps = 2/177 (1%)
Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
           +R  +   A+RKGRH G GKR+GT  AR+P K+ WM              E+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS--EERL 175
           H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R   EERL
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERL 177

>pdb|4A1A|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 3. Length = 185

Iteration: 1
 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/171 (58%), Positives = 128/171 (74%)
Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSL+LQKRLAAS+LKCG+  +WLDPNE +EISMANSR +IRKL+K G ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60
Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
           SRA    EAKRKGRH+G GKR+GTR AR+PTK+ WM               AKKID+H Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRS 171
           H+ Y+  KGN++KNK VL+E+IH S+A+K +   L+ Q EA+RAKN ASR+
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTASRA 171

>pdb|3ZF7|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 260

Iteration: 1
 Score =  196 bits (499), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 125/174 (71%)
Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSLKLQ RLAA +L+CGRG VWLDPNE  EI  ANSR+++RKL+K G ++RKP K+HSR
Sbjct: 1   MVSLKLQARLAADILRCGRGRVWLDPNEAVEIRNANSRKSVRKLIKDGLVMRKPVKVHSR 60
Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
           SR  +MK AK  GRH G G+R GTREAR+P+K  WM              E KKIDRH+Y
Sbjct: 61  SRWRQMKLAKSMGRHEGTGRREGTREARMPSKDLWMRRLRILRRLLRKYREEKKIDRHIY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASRSEER 174
            ++YMK KGNVF+NKR LME IHK + EK + + L++QL AKR K++ +R + R
Sbjct: 121 RELYMKAKGNVFRNKRNLMEHIHKVKNEKKKARQLAEQLAAKRLKDEQNRRKAR 174

>pdb|4A17|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2 Length = 185

Iteration: 1
 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 111/147 (75%)
Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSL+LQKRLAAS+LKCG+  +WLDPNE +EISMANSR +IRKL+K G ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60
Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
           SRA    EAKRKGRH+G GKR+GTR AR+PTK+ WM               AKKID+H Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRA 147
           H+ Y+  KGN++KNK VL+E+IH S+A
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKA 147

>pdb|2WW9|J Chain J, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 189

Iteration: 1
 Score =  176 bits (447), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 84/166 (50%), Positives = 118/166 (71%)
Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M +L+ QKRLAAS++  G+  VWLDPNE +EI+ ANSR  IRKLVK G I++K   +HS+
Sbjct: 1   MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSK 60
Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
           SR     ++KR+GRHSGYGKR+GTREARLP+++ W+              +A KID+H+Y
Sbjct: 61  SRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKN 166
           H +Y + KGN FK+KR L+E I +++A+  REK L+++ EA+R KN
Sbjct: 121 HVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKN 166

>pdb|3JYW|P Chain P, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 176

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 99/140 (70%)
Query: 3   SLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSR 62
           +L+ QKRLAAS++  G+  VWLDPNE +EI+ ANSR  IRKLVK G I++K   +HS+SR
Sbjct: 2   NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 61
Query: 63  ALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMYHD 122
                ++KR+GRHSGYGKR+GTREARLP+++ W+              +A KID+H+YH 
Sbjct: 62  TRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHV 121
Query: 123 MYMKVKGNVFKNKRVLMESI 142
           +Y + KGN FK+KR L+E I
Sbjct: 122 LYKESKGNAFKHKRALVEHI 141

>pdb|1S1I|P Chain P, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 142

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 99/140 (70%)
Query: 3   SLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSR 62
           +L+ QKRLAAS++  G+  VWLDPNE +EI+ ANSR  IRKLVK G I++K   +HS+SR
Sbjct: 2   NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 61
Query: 63  ALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMYHD 122
                ++KR+GRHSGYGKR+GTREARLP+++ W+              +A KID+H+YH 
Sbjct: 62  TRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHV 121
Query: 123 MYMKVKGNVFKNKRVLMESI 142
           +Y + KGN FK+KR L+E I
Sbjct: 122 LYKESKGNAFKHKRALVEHI 141

>pdb|3J21|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 150

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 83/138 (60%)
Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M +LK+Q+R+AA +LKCG   +W+DP  +++++ A +R++I++L+K G I +KP K  SR
Sbjct: 1   MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSR 60
Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
            RA    E K+KGRH G G R+G + AR+  K  W+                KKIDR  Y
Sbjct: 61  YRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTY 120
Query: 121 HDMYMKVKGNVFKNKRVL 138
             +Y++ KG  FKNK  L
Sbjct: 121 RMLYIRAKGGQFKNKHQL 138

>pdb|3OW2|O Chain O, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 143

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%)
Query: 2   VSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRS 61
             L  QKRLAA +L  G+  VW +P    +I+ A +R+++R+LV  G I  K  K +SR 
Sbjct: 1   TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62  RALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMYH 121
           RA   ++ + KG   G G R+G   AR  +K  W               +   +    Y 
Sbjct: 61  RARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 DMYMKVKGNVF 132
           D+Y K  G  F
Sbjct: 121 DLYDKAGGGEF 131

>pdb|1FFK|M Chain M, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 148

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%)
Query: 2   VSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRS 61
             L  QKRLAA +L  G+  VW +P    +I+ A +R+++R+LV  G I  K  K +SR 
Sbjct: 1   TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62  RALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMYH 121
           RA   ++ + KG   G G R+G   AR  +K  W               +   +    Y 
Sbjct: 61  RARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 DMYMKVKGNVF 132
           D+Y K  G  F
Sbjct: 121 DLYDKAGGGEF 131

>pdb|1S72|P Chain P, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 149

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 61/132 (46%)
Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M  L  QKRLAA +L  G+  VW +P    +I+ A +R+++R+LV  G I  K  K +SR
Sbjct: 1   MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSR 60
Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMY 120
            RA   ++ +  G   G G R+G   AR  +K  W               +   +    Y
Sbjct: 61  GRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQY 120
Query: 121 HDMYMKVKGNVF 132
            D+Y K  G  F
Sbjct: 121 RDLYDKAGGGEF 132

>pdb|3G4S|P Chain P, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 143

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 60/131 (45%)
Query: 2   VSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRS 61
             L  QKRLAA +L  G+  VW +P    +I+ A +R+++R+LV  G I  K  K +SR 
Sbjct: 1   TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62  RALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMXXXXXXXXXXXXXXEAKKIDRHMYH 121
           RA   ++ +  G   G G R+G   AR  +K  W               +   +    Y 
Sbjct: 61  RARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 DMYMKVKGNVF 132
           D+Y K  G  F
Sbjct: 121 DLYDKAGGGEF 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
4a17_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	5e-60
3iz5_T	209	60S ribosomal protein L19 (L19E); eukaryotic ribos	6e-55
4a1a_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	3e-54
3jyw_P	176	60S ribosomal protein L19; eukaryotic ribosome, RA	3e-54
1vq8_P	149	50S ribosomal protein L19E; ribosome 50S, protein-	3e-53
3u5e_R	189	60S ribosomal protein L19-A; translation, ribosome	3e-51
2zkr_p	196	60S ribosomal protein L19; protein-RNA complex, 60	6e-50
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-04

>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} Length = 185

 Score =  185 bits (471), Expect = 5e-60
 Identities = 100/147 (68%), Positives = 124/147 (84%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSL+LQKRLAAS+LKCG+  +WLDPNE +EISMANSR +IRKL+K G ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA    EAKRKGRH+G GKR+GTR AR+PTK+ WMRR RVLRRLLR+YR AKKID+H Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRA 147
           H+ Y+  KGN++KNK VL+E+IH S+A
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKA 147

>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O Length = 185

 Score =  170 bits (432), Expect = 3e-54
 Identities = 112/170 (65%), Positives = 140/170 (82%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           MVSL+LQKRLAAS+LKCG+  +WLDPNE +EISMANSR +IRKL+K G ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SRA    EAKRKGRH+G GKR+GTR AR+PTK+ WMRR RVLRRLLR+YR AKKID+H Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASR 170
           H+ Y+  KGN++KNK VL+E+IH S+A+K +   L+ Q EA+RAKN ASR
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTASR 170

>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 176

 Score =  170 bits (431), Expect = 3e-54
 Identities = 89/168 (52%), Positives = 120/168 (71%)

Query: 3   SLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSR 62
           +L+ QKRLAAS++  G+  VWLDPNE +EI+ ANSR  IRKLVK G I++K   +HS+SR
Sbjct: 2   NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 61

Query: 63  ALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHD 122
                ++KR+GRHSGYGKR+GTREARLP+++ W+RR+RVLRRLL +YR+A KID+H+YH 
Sbjct: 62  TRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHV 121

Query: 123 MYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASR 170
           +Y + KGN FK+KR L+E I  + A  A     +    A  A   A+ 
Sbjct: 122 LYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAAAAAAAAAAAAAAA 169

>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ... Length = 149

 Score =  167 bits (423), Expect = 3e-53
 Identities = 50/148 (33%), Positives = 73/148 (49%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M  L  QKRLAA +L  G+  VW +P    +I+ A +R+++R+LV  G I  K  K +SR
Sbjct: 1   MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
            RA   ++ +  G   G G R+G   AR  +K  W  R+R  R  LR  R+   +    Y
Sbjct: 61  GRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAE 148
            D+Y K  G  F +   L   I  +  +
Sbjct: 121 RDLYDKAGGGEFDSVADLERYIDANHGD 148

>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P Length = 189

 Score =  163 bits (413), Expect = 3e-51
 Identities = 97/170 (57%), Positives = 135/170 (79%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M +L+ QKRLAAS++  G+  VWLDPNE +EI+ ANSR  IRKLVK G I++K   +HS+
Sbjct: 1   MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSK 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           SR     ++KR+GRHSGYGKR+GTREARLP+++ W+RR+RVLRRLL +YR+A KID+H+Y
Sbjct: 61  SRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASR 170
           H +Y + KGN FK+KR L+E I +++A+  REK L+++ EA+R KN+A+R
Sbjct: 121 HVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAAR 170

>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 196

 Score =  160 bits (405), Expect = 6e-50
 Identities = 115/170 (67%), Positives = 142/170 (83%)

Query: 1   MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSR 60
           M  L+LQKRLA+S+L+CG+  VWLDPNE NEI+ ANSRQ IRKL+K G IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMY 120
           +R  +   A+RKGRH G GKR+GT  AR+P K+ WMRRMR+LRRLLRRYRE+KKIDRHMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLEAKRAKNKASR 170
           H +Y+KVKGNVFKNKR+LME IHK +A+KAR+K+L+DQ EA+R+K K +R
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEAR 170

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 5e-07
 Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 62/186 (33%)

Query: 21  MVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTK----IHSRSRALRMKEAKRKGRHS 76
           ++W D  + + + + N      KL K   + ++P +    I S    L++K       H 
Sbjct: 394 LIWFDVIKSDVMVVVN------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH- 446

Query: 77  GYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRH---------------MYH 121
                                     R ++  Y   K  D                  +H
Sbjct: 447 --------------------------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 122 ----DMYMKVKG--NVFKNKRVLMESI-HKSRAEKAREKILSDQLEAKRAKNKASRSE-- 172
               +   ++     VF + R L + I H S A  A   IL+   + K  K     ++  
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 173 -ERLAK 177
            ERL  
Sbjct: 541 YERLVN 546

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 10/133 (7%)

Query: 55  TKIHSRSRALRMKEAKRKGRHSGYGKR------RGTREARLPTKIPWMRRMRVLRRLLRR 108
            + +   + +  K+A  + R  G             +E +   K P  + +  L  +   
Sbjct: 765 KRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNS 824

Query: 109 YREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKIL----SDQLEAKRA 164
            +   ++ +         +  N   +    +E   +  AE  R ++        L  K  
Sbjct: 825 LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN 884

Query: 165 KNKASRSEERLAK 177
           +           K
Sbjct: 885 RILKKLENWATTK 897

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
3u5e_R	189	60S ribosomal protein L19-A; translation, ribosome	100.0
4a1a_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	100.0
3iz5_T	209	60S ribosomal protein L19 (L19E); eukaryotic ribos	100.0
2zkr_p	196	60S ribosomal protein L19; protein-RNA complex, 60	100.0
4a17_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	100.0
1vq8_P	149	50S ribosomal protein L19E; ribosome 50S, protein-	100.0
3j21_Q	150	PFEL19, 50S ribosomal protein L19E; archaea, archa	100.0
3jyw_P	176	60S ribosomal protein L19; eukaryotic ribosome, RA	100.0

>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P

Probab=100.00  E-value=9.3e-90  Score=583.02  Aligned_cols=186  Identities=53%  Similarity=0.889  Sum_probs=183.0

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974            1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK   80 (212)
Q Consensus         1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk   80 (212)
                      |++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus         1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk   80 (189)
T 3u5e_R            1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGK   80 (189)
T ss_dssp             -CCCHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGG
T ss_pred             CcchHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974           81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE  160 (212)
Q Consensus        81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae  160 (212)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus        81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae  160 (189)
T 3u5e_R           81 RKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE  160 (189)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhH--HHHhccCCCCCCCCC
Q 046974          161 AKRAKNKASRS--EERLAKGPGGAPTTA  186 (212)
Q Consensus       161 Arr~k~k~~r~--eerl~~k~~e~~~~~  186 (212)
                      |+|+|++++++  +|++|++++||++++
T Consensus       161 a~r~k~k~~~~r~~~~~~~k~~~~~~~~  188 (189)
T 3u5e_R          161 ARRLKNRAARDRRAQRVAEKRDALLKED  188 (189)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSTTHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999  999999999998753

>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O

Probab=100.00  E-value=2.6e-87  Score=566.45  Aligned_cols=177  Identities=64%  Similarity=1.011  Sum_probs=145.8

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974            1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK   80 (212)
Q Consensus         1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk   80 (212)
                      |++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus         1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk   80 (185)
T 4a1a_O            1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK   80 (185)
T ss_dssp             -CCCHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred             CcchHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974           81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE  160 (212)
Q Consensus        81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae  160 (212)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+||||
T Consensus        81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae  160 (185)
T 4a1a_O           81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQE  160 (185)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC-------------
T ss_pred             cccchhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhH--HHHhcc
Q 046974          161 AKRAKNKASRS--EERLAK  177 (212)
Q Consensus       161 Arr~k~k~~r~--eerl~~  177 (212)
                      |+|+|++++++  ++++|.
T Consensus       161 a~r~k~k~~r~~~~~~~~~  179 (185)
T 4a1a_O          161 ARRAKNTASRAKRNEKAQI  179 (185)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHhHHHHHHH
Confidence            99999999999  787763

>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=3.8e-85  Score=557.15  Aligned_cols=185  Identities=65%  Similarity=1.040  Sum_probs=150.5

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974            1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK   80 (212)
Q Consensus         1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk   80 (212)
                      |++|++||||||+||+||+++||||||+++||++||||||||+||+||+|+.+|++|||||||+++++++++|||+|+||
T Consensus         1 M~~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~Gk   80 (196)
T 2zkr_p            1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK   80 (196)
T ss_dssp             --------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC---
T ss_pred             CcchHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974           81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE  160 (212)
Q Consensus        81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae  160 (212)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.|||++|+++|+||||
T Consensus        81 RKGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~e  160 (196)
T 2zkr_p           81 RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE  160 (196)
T ss_dssp             ---CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHH
T ss_pred             CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhH--HHHhccCCCCCCCC
Q 046974          161 AKRAKNKASRS--EERLAKGPGGAPTT  185 (212)
Q Consensus       161 Arr~k~k~~r~--eerl~~k~~e~~~~  185 (212)
                      |+|++++++++  +++++++.++|+..
T Consensus       161 a~r~k~k~~r~~r~~~~~~~~~~~~~~  187 (196)
T 2zkr_p          161 ARRSKTKEARKRREERLQAKKEEIIKT  187 (196)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999  89999999888763

>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}

Probab=100.00  E-value=5.1e-83  Score=540.04  Aligned_cols=165  Identities=61%  Similarity=0.973  Sum_probs=162.1

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974            1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK   80 (212)
Q Consensus         1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk   80 (212)
                      |++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+|||++++++++|||+|+||
T Consensus         1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~Gk   80 (185)
T 4a17_O            1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK   80 (185)
T ss_dssp             -CCCHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred             CcchHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 046974           81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKILSDQLE  160 (212)
Q Consensus        81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L~dQae  160 (212)
                      |+||+|||||+|++||+|||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++|+|+|+||||
T Consensus        81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqae  160 (185)
T 4a17_O           81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXX  160 (185)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 046974          161 AKRAK  165 (212)
Q Consensus       161 Arr~k  165 (212)
                      |.-.-
T Consensus       161 a~~~~  165 (185)
T 4a17_O          161 XXXXX  165 (185)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            97654

>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...

Probab=100.00  E-value=1.9e-77  Score=492.54  Aligned_cols=149  Identities=34%  Similarity=0.546  Sum_probs=142.8

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974            1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK   80 (212)
Q Consensus         1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk   80 (212)
                      |++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+||
T Consensus         1 M~~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk   80 (149)
T 1vq8_P            1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGS   80 (149)
T ss_dssp             -CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGG
T ss_pred             CcchHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHH
Q 046974           81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEK  149 (212)
Q Consensus        81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek  149 (212)
                      |+||+|||||+|+.||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||+.++|+
T Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~  149 (149)
T 1vq8_P           81 RKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA  149 (149)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred             CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999884

>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.3e-77  Score=491.55  Aligned_cols=146  Identities=42%  Similarity=0.774  Sum_probs=144.6

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCC
Q 046974            1 MVSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGK   80 (212)
Q Consensus         1 M~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~Gk   80 (212)
                      |++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus         1 m~~l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk   80 (150)
T 3j21_Q            1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS   80 (150)
T ss_dssp             CCCCHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTT
T ss_pred             CcchHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHH
Q 046974           81 RRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSR  146 (212)
Q Consensus        81 RKGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~k  146 (212)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+|||+...
T Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~~  146 (150)
T 3j21_Q           81 RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHG  146 (150)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHS
T ss_pred             ccCcccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999864

>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=100.00  E-value=2.7e-73  Score=478.17  Aligned_cols=154  Identities=56%  Similarity=0.928  Sum_probs=151.1

Q ss_pred             CchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCC
Q 046974            2 VSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKR   81 (212)
Q Consensus         2 ~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~GkR   81 (212)
                      ++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+|||++++++++|||+|+|+|
T Consensus         1 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkR   80 (176)
T 3jyw_P            1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKR   80 (176)
T ss_dssp             CCCHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSC
T ss_pred             CCcHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHhh
Q 046974           82 RGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSRAEKAREKIL  155 (212)
Q Consensus        82 KGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~kaek~r~k~L  155 (212)
                      +||+|||||+|++||+|||+||++|++|||+|+||+|+||.||+++|||+|+|+++|++|||+.++|+++.-.-
T Consensus        81 kGt~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~  154 (176)
T 3jyw_P           81 KGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAA  154 (176)
T ss_dssp             SSCTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHH
T ss_pred             cccccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1vqop1	143	a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {A	7e-59

>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 143

class: All alpha proteins
fold: Ribosomal protein L19 (L19e)
superfamily: Ribosomal protein L19 (L19e)
family: Ribosomal protein L19 (L19e)
domain: Ribosomal protein L19 (L19e)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  179 bits (457), Expect = 7e-59
 Identities = 49/141 (34%), Positives = 70/141 (49%)

Query: 3   SLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSR 62
            L  QKRLAA +L  G+  VW +P    +I+ A +R+++R+LV  G I  K  K +SR R
Sbjct: 2   DLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGR 61

Query: 63  ALRMKEAKRKGRHSGYGKRRGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHD 122
           A   ++ +  G   G G R+G   AR  +K  W  R+R  R  LR  R+   +    Y D
Sbjct: 62  ARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRD 121

Query: 123 MYMKVKGNVFKNKRVLMESIH 143
           +Y K  G  F +   L   I 
Sbjct: 122 LYDKAGGGEFDSVADLERYID 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1vqop1	143	Ribosomal protein L19 (L19e) {Archaeon Haloarcula	100.0

>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Ribosomal protein L19 (L19e)
superfamily: Ribosomal protein L19 (L19e)
family: Ribosomal protein L19 (L19e)
domain: Ribosomal protein L19 (L19e)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=4.5e-73  Score=462.04  Aligned_cols=142  Identities=35%  Similarity=0.554  Sum_probs=141.0

Q ss_pred             CchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCC
Q 046974            2 VSLKLQKRLAASMLKCGRGMVWLDPNEVNEISMANSRQNIRKLVKGGFIIRKPTKIHSRSRALRMKEAKRKGRHSGYGKR   81 (212)
Q Consensus         2 ~~L~lQKRLAA~VL~cGk~kVWlDPne~~eIa~A~SRq~IRkLIkdGlIi~Kpv~~hSR~R~R~~~~ar~kGRh~G~GkR   81 (212)
                      |||++||||||+||+||++||||||||++||++||||||||+||+||+|+.+|++||||+|++++++++++|||+|+|+|
T Consensus         1 snL~~QKRLAa~vL~~G~~rVw~DP~~~~eI~~A~tr~dIR~LI~dG~I~~kp~kg~Sr~R~r~~~~~k~kGr~~G~GkR   80 (143)
T d1vqop1           1 TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSR   80 (143)
T ss_dssp             CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGGC
T ss_pred             CchHHHHHHHHHHHCCCCCeeeeChHHHHHHHHhhhHHHHHHHHHCCCEEeCCCCCCcHHHHHHHHHHHHhCCCCCcCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHHHHHhcCCCChhhhHHHHhhhcCCccccHHHHHHHHH
Q 046974           82 RGTREARLPTKIPWMRRMRVLRRLLRRYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIH  143 (212)
Q Consensus        82 KGt~~AR~p~K~~WmrRiR~lRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~  143 (212)
                      +||+|||||+|+.||++||+||++|++|||+|+||+|+||+||++||||+|+|++||++||+
T Consensus        81 KGt~~AR~p~K~~Wm~riR~lRr~Lk~lr~~~~Id~~~Yr~LY~kaKGn~Fknk~~L~~~I~  142 (143)
T d1vqop1          81 KGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYID  142 (143)
T ss_dssp             CSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHT
T ss_pred             cCcccccCCchhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCcccCHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999996